DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 imex curation Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. Only protein-protein interactions in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting predetermined predetermined participant predetermined Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. DIP original experiment: DIP-254276X Nature 2009 IMEx Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 imex curation Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. Only protein-protein interactions in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting predetermined predetermined participant predetermined Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. DIP original experiment: DIP-254277X Nature 2009 IMEx Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 imex curation Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. Only protein-protein interactions in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting predetermined predetermined participant predetermined Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. DIP original experiment: DIP-254280X Nature 2009 IMEx Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 imex curation Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. Only protein-protein interactions in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting anti tag western anti tag western blot anti tag western Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. DIP original experiment: DIP-254278X Nature 2009 IMEx Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 2009 imex curation Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. Only protein-protein interactions in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting predetermined predetermined participant predetermined Tubbs JL., Latypov V., Kanugula S., Butt A., Melikishvili M., Kraehenbuehl R., Fleck O., Marriott A., Watson AJ., Verbeek B., McGown G., Thorncroft M., Santibanez-Koref MF., Millington C., Arvai AS., Kroeger MD., Peterson LA., Williams DM., Fried MG., Margison GP., Pegg AE., Tainer JA. DIP original experiment: DIP-254279X Nature 2009 IMEx Flipping of alkylated DNA damage bridges base and nucleotide excision repair. uvrc_ecoli UvrABC system protein C Excinuclease ABC subunit C b1913 uvrC JW1898 protein protein ecoli Escherichia coli (strain K12) MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH DIP protein P0A8G0 original sequence version: 78 DIP protein P0A8G0 original sequence version: 45 DIP protein P0A8G0 original sequence version: 38 DIP protein P0A8G0 original sequence version: null F76766477C9ABCB6 uvrb_ecoli UvrABC system protein B uvrB b0779 Excinuclease ABC subunit B JW0762 protein protein ecoli Escherichia coli (strain K12) MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS DIP protein P0A8F8 original sequence version: 87 DIP protein P0A8F8 original sequence version: 52 DIP protein P0A8F8 original sequence version: 88 DIP protein P0A8F8 original sequence version: 46 DIP protein P0A8F8 original sequence version: null 2F172045344FDAD7 atl_ecoli DNA base-flipping protein atl Alkyltransferase-like protein ATL ybaZ JW0444 b0454 protein protein ecoli Escherichia coli (strain K12) MLVSCAMRLHSGVFPDYAEKLPQEEKMEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWNY DIP protein P0AFP2 original sequence version: 31 This sequence has been withdrawn from Uniprot. 584382A5657919CA atl1_schpo Alkyltransferase-like protein 1 atl1 SPAC1250.04c protein protein schpo Schizosaccharomyces pombe (strain ATCC 38366 / 972) Fission yeast MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKDRLEEEGVEIYQTSLGEYKLNLPEYMWKP 7F8B3BA12CED07F1 uvra_ecoli UvrABC system protein A uvrA dinE b4058 Excinuclease ABC subunit A JW4019 protein protein ecoli Escherichia coli (strain K12) MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML DIP protein P0A698 original sequence version: 81 DIP protein P0A698 original sequence version: 82 DIP protein P0A698 original sequence version: 41 DIP protein P0A698 original sequence version: null D61AAEB6514B860C uvra-atl-1 1 10 unspecified role unspecified role bait bait ecolx Escherichia coli 8 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range ecolx Escherichia coli direct interaction direct interaction atl1-uvra-1 5 9 unspecified role unspecified role bait bait ecolx Escherichia coli 10 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range ecolx Escherichia coli direct interaction direct interaction uvrc-atl-1 2 6 unspecified role unspecified role bait bait ecolx Escherichia coli 8 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range ecolx Escherichia coli direct interaction direct interaction uvrb-uvra-2 3 7 unspecified role unspecified role bait bait ecolx Escherichia coli 10 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range ecolx Escherichia coli direct interaction direct interaction atl-uvra-1 4 10 unspecified role unspecified role prey prey Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range ecolx Escherichia coli 8 unspecified role unspecified role bait bait ecolx Escherichia coli direct interaction direct interaction