IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing. Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing. The EMBO journal 2011 imex curation van Nues RW., Granneman S., Kudla G., Sloan KE., Chicken M., Tollervey D., Watkins NJ. n.j.watkins@ncl.ac.uk 17-Sep-2015: Contacted by IntAct-Help. Only protein-protein interactions imex curation yeast Saccharomyces cerevisiae Baker's yeast crac crac CRAC cross-linking and analysis of cDNAs crac partial nucleotide sequence partial nucleotide sequence identification partial nucleotide sequence van Nues RW., Granneman S., Kudla G., Sloan KE., Chicken M., Tollervey D., Watkins NJ. n.j.watkins@ncl.ac.uk Accepted 2015-AUG-11 by ORCHARD The EMBO journal 2011 imex curation snr71 yeast small nucleolar RNA 71 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUUAUAUGAUGAUAACCUUCUCAGCUCACUCAGAUCUUUUGAUAUGAUUGAUAAAAAUUUCCUAUCCAACAUUCAUCAAUUUAUCUGACC snr66 yeast-1 small nuclear RNA 66 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUCAAAUGAUGAAAUACCAAUGCAACAGAGUCAAGCUCUGAGUUUCAAAAAGAAACAUGGACGAGAUUGCUUUUUUAUUACUGACC fbrl_yeast rRNA 2'-O-methyltransferase fibrillarin NOP1 LOT3 YDL014W D2870 U3 small nucleolar RNA-associated protein NOP1 Histone-glutamine methyltransferase protein protein yeast Saccharomyces cerevisiae Baker's yeast MSFRPGSRGGSRGGSRGGFGGRGGSRGGARGGSRGGFGGRGGSRGGARGGSRGGFGGRGGSRGGARGGSRGGRGGAAGGARGGAKVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEKRISVEEPSKEDGVPPTKVEYRVWNPFRSKLAAGIMGGLDELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRPNIIPIIEDARHPQKYRMLIGMVDCVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRYMRSGLKK 56A8B958A7B6066E 56A8B958A7B6066E snru14 yeast small nucleolar RNA U14 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UCACGGUGAUGAAAGACUGGUUCCUUAACAUUCGCAGUUUCCACGGUAGGAGUACGCUUACGAACCCAUCGUUAGUACUCUCGGUGACCGCUCUUCUUUAGAGACCUUCCUAGGAUGUCUGAGUGA snr61 yeast small nucleolar RNA 61 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast CUACAAUGAUGAUAAAAUUUACUAUUCAGUUCUGCUUCUGAACCAAAAUAAUAGGAAGAUAACCAAUUUUACCAAAGCUCAAAUCUGAUU snr60 yeast-1 small nuclear RNA 60 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGUUAAUGAUGAUAACCAAAGAUGCAUAGUUCAACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUCUUUCGCUCCUAUCUGAAC nop56_yeast Nucleolar protein 56 SIK1 Ribosome biosynthesis protein SIK1 YLR197W L8167.9 NOP56 Suppressor of I kappa b protein 1 protein protein yeast Saccharomyces cerevisiae Baker's yeast MAPIEYLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVSFAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASSKKKNITLAISDKNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQLGLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWHFPELAKLVPDNYTFAKLVLFIKDKASLNDDSLHDLAALLNEDSGIAQRVIDNARISMGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFGSVLKKQVEQRLEFYNTGKPTLKNELAIQEAMELYNKDKPAAEVEETKEKESSKKRKLEDDDEEKKEKKEKKSKKEKKEKKEKKDKKEKKDKKEKKDKKKKSKD F8522A5870EF4842 F8522A5870EF4842 snru3b yeast small nuclear RNA U3b Yeast snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast GUCGACGUACUUCAGUAUGUUUUAUACCAUAUACUUUAUUAGGAAUAUAACAAAGCAUACCCAAUAAUUAGGCAAUGCGAUUGUCGUAUUCAACAACCAUCUUCUAUUUCACCAGCUUCAGGUUUUGACUAACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAGU snr45 yeast small nucleolar RNA 45 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUGACCUUCCAAGUUUUUAAAAGAAUACGAUGAUAUUAUUUGCGUUUCAAAUCGAACAAUUCUUCUCGGAGCGAUCUGAGGUUUUAAUGGAGAUAGCGGUUCCUGCGCAACCCAUUGAUCUUGUUACAUUCUUAAGAAUGACAAGGACGCUUUUAUAAAAUUCUGAUUCUUU snr73 yeast small nucleolar RNA 73 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUUUAUGAUGAUUUCCACAUUUCACGACGGUCAACUGCGUUUUUCGAAUGUUUAUCGAUUAACUUUGAUGAUAUUUCGCCUGUGACAGGGCGUGGUACUGAGCUUU snr41 yeast small nuclear RNA 41 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UCCCCUAUGAUUAAAAAUUAUUAAUCAUAUACCAAUUGUUCCGACUGAAUAGUGGUUUAACUACAUGUCGACAACCCUUUUUCGUUAAGUUUCAG snr54 yeast small nuclear RNA 54 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAAGAUGAUGAUCAACUUUUUAUAUCAAUAACUUUCGUUCUACUGACUGUGAUCAAACGAUCUUGUAGAGAACUUUUACUCUGAAU snr70 yeast small nucleolar RNA 70 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGAUAUGAUGAUUUGUUGUCGACCGGGCGGACAUAUUAGUAUCUGUUAAAGGGUCGCCGUCUACUCUCAUCGUUCUUUUGUGUACAAAUUUUUUAAAGGAGCGAUGUUGAUGGCAUUAUGGUUCUUUAGUGGAGAAUUGAUGAUUGGUCACAAGACAUCUGAUU snr57 yeast small nuclear RNA 57 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AAGCGUGAUUAUAAAAAAUGAUUUAAAUAUUUUUCUGAGGAAGUAUAUGCAGGACAUAUUGUGAAUUAGGAAUUCUUCGUUUAUGAUC snr4 yeast small nucleolar RNA 4 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AACUAUUACAGUCGAUGAGGAUAGGUUAUAGUUCAUGUGUAACAUCUGUGUUUUAAAAUAACUCUAGUUAUCCGGGGCGUUUUUCACAAAGUUUGUGUAAGAUGCUUUCCUGGGUCGAUGUGGAUUGUGCCGUGGCCUUUUUCACCACCUUUAUAGCGGUGCUUUAACUAUUAAUAACUGAGGCUG nop58_yeast Nucleolar protein 58 Nucleolar protein 5 NOP58 NOP5 YOR310C O6108 protein protein yeast Saccharomyces cerevisiae Baker's yeast MAYVLTETSAGYALLKASDKKIYKSSSLIQDLDSSDKVLKEFKIAAFSKFNSAANALEEANSIIEGKVSSQLEKLLEEIKKDKKSTLIVSETKLANAINKLGLNFNVVSDAVTLDIYRAIKEYLPELLPGMSDNDLSKMSLGLAHSIGRHKLKFSADKVDVMIIQAIALLDDLDKELNTYAMRCKEWYGWHFPELAKIVTDSVAYARIILTMGIRSKASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLEGRDLRTTPKVVREAKKVEMTEARAYNADADTAKAASDSESDSDDEEEEKKEKKEKKRKRDDDEDSKDSKKAKKEKKDKKEKKEKKEKKEKKEKKEKKEKKSKKEKKEKK 8A2889448B2A19E2 8A2889448B2A19E2 snr68 yeast-1 small nuclear RNA 68 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAUCAUGAUGAGCAUUUAUUUUACUGCGUUAUCGUAUUGACGGGGGCUGUUUAAGUACAGUCUGUUUUAUAAUCUAUAUUCAUUUAUAUUUUAUAUUUCUUACCGAGGAAAUUGACUCUUAACAGAUUUGCUGAAA snr77 yeast small nucleolar RNA 77 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUCAUAUGAUGAUUAUAACAAAAACAAAAGCUGGAAUUACUGGCUGAACGAGUAUAUGUUGAUACGUUUUUGCACUAUCCUGACCUAG snr52 yeast small nucleolar RNA 52 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UACUAUGAUGAAUGACAUUAGCGUGAACAAUCUCUGAUACAAAAUCGAAAGAUUUUAGGAUUAGAAAAACUUAUGUUGCCUUCCUUCUGAAA snr47 yeast small nucleolar RNA 47 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUAUAUGAUGAUAUCCUAUAACAACAACAACAUGAAUUUCUUCGUCCGAAUCCUUUAUAGGUGGAAACAAACUUUGACAAUAGCUUUUUAACACUGAUA snr24 yeast u24 small nuclear RNA 24 U24 snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast UCAAAUGAUGUAAUAACAUAUUUGCUACUUCAGAUGGAACUUUGAGUUCCGAAUGAGACAUACCAAUUAUCACCAAGAUCUCUGAUGAA snr87 yeast small nucleolar RNA 87 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUAACUGAAUGAUGAUAUAAUUUGCGAUCUAGGGCUAAUCACUUGGAACACCGCCAUGUUCUAUAUGGGUGAUUAGCGAAGUGCGAAAAAUUUUUUAUCUGAUAUUUUC snr79 yeast small nucleolar RNA 79 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAAUGAUGAUAGCAUGAUUUAUGUUGCUCGAAGUUAAUCGAUGUGAGCACAAUGAUUUCUCAAGACUACAACGGUAUCUGAAU snr67 yeast-1 small nucleolar RNA 67 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAACAUGAUGACUAAGUUGUCGCCCCAAGCGGAUCUUUGAAAUGACUGAUUUUACAAACAACAAACACUGAAAAUUCUGAAA snr75 yeast small nucleolar RNA 75 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAUGAUGAGAUAUUUAUAGAUGACGAGUCUGAUCAUUCGUGAAGACACAACUAUUAAAAUUACCAUUCAUGCCUUUCUGAAGCUGUUU snr51 yeast small nuclear RNA 51 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAUUAUGAUGAUUUUUUUAUAUUCACACUGUACUAGAUUGGUCUCUUUAACGAAGGGGCUAAUUGAUGACUACAAAAUAAAAAAUAACUGAUUUAAUGACUCUGAAA snr190 yeast small nucleolar RNA 190 yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GGCCCUGAUGAUAAUGGUGUCUCUUCUUUCCUCGUCCGAUUCGACCAUGACGACAAGGGAUUUUAUCUCGUUCUCUUAAUGCGAAUGAUUUUGAAAAGAUGUUGCUUCUGUGACAUUUUUUUUUAAUCAUUUGUGUUUGCAAACGGGAACUUUUCUUGCCAGUGUUAUACAACACAUGCAGAUCUGAGCC snru3a yeast small nuclear RNA U3a Yeast snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast GUCGACGUACUUCAGUAUGUAAUAUACCCCAAACAUUUUACCCACAAAAAACCAGGAUUUGAAAACUAUAGCAUCUAAAAGUCUUAGGUACUAGAGUUUUCAUUUCGGAGCAGGCUUUUUGAAAAAUUUAAUUCAACCAUUGCAGCAGCUUUUGACUAACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAGU snr74 yeast small nucleolar RNA 74 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGCAGAAGAUGAAACAAAUUACUCAAAUAGACAAGCAUAUGUCUGAUCUUCAUGAUUGAAAAGAGCAAUUAGUGUCUGAUGCAAUUUA snr13 yeast small nucleolar RNA 13 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AGGAAGUUUUUUCCUUUUUAUAUGAUGAAUAUGAGUGCAUUUGGCUCGAGUUGCUGUUUGGCUUUUGCCAAAUCAGUAACGGUGUGGAAAAACUCAAGCUACCUUUUUUUACUUUUAUCUGACC snr56 yeast small nuclear RNA 56 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAACAUGAUGAAAAAAUAUAUUAACACAGACCUGUACUGAACUUUUCGAAGUUUUGCAGAUAACAAUAUUGCUUUUUUUCUCUGACU snr38 yeast small nucleolar RNA 38 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast CAUAAUGAUGAAAAAAAAUUUUAUCAAACAGUUAUCCCUGUCUGAAUGGGUAAUAAUAGGUAACCUCUCAUAUGUUGAUAUUUGUAUUUCUGAUA snr40 yeast small nucleolar RNA 40 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUAAAUGACGAGAAAAAAGCUGUGCACCAGUCUGAACAUGGAUGCCACAAGUACUCAGGUGUCCUAUGAAGCAUUAAGUAUACCCAAAUUUCUGAUC snr63 yeast small nuclear RNA 63 yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUUAAUGAUGAAGAUUUUAAUUUUCCGUUGGUCUAUUAAGAACAGAAGUACUUCAAAACUACUUUUUAAGACCAUCCUUUUACAGUAUUUUUUCAAUAUUGUAAAACUUCUCAUUUACUUUGUGUCUUUAUGAUCUCAUCGUUCUGGUGGACCAUAAUCAGACGCACGGUAUACUUCGUUUCUGUUGGAGAAUAUUGGGAGUCUUUUAAUGUGAUGAGUGGCCAACAUAACCUUAUAGUCAUAGUUACACUGAUU nop1-1 1 31 unspecified role unspecified role prey prey 30 unspecified role unspecified role prey prey 11 unspecified role unspecified role prey prey 14 unspecified role unspecified role prey prey 35 unspecified role unspecified role prey prey 6 unspecified role unspecified role prey prey 15 unspecified role unspecified role prey prey 32 unspecified role unspecified role prey prey 13 unspecified role unspecified role prey prey 24 unspecified role unspecified role prey prey 19 unspecified role unspecified role prey prey 27 unspecified role unspecified role prey prey 20 unspecified role unspecified role prey prey 26 unspecified role unspecified role prey prey 21 unspecified role unspecified role prey prey 10 unspecified role unspecified role prey prey 12 unspecified role unspecified role prey prey 34 unspecified role unspecified role prey prey 33 unspecified role unspecified role prey prey 22 unspecified role unspecified role prey prey 28 unspecified role unspecified role prey prey 9 unspecified role unspecified role prey prey 29 unspecified role unspecified role prey prey 5 unspecified role unspecified role prey prey 4 unspecified role unspecified role bait bait tag tap tagged calmodulin binding peptide plus protein a tag CBP-ProtA tagged CBP-ProtA tagged tap tagged c-term range C-terminal range c-term range c-term range C-terminal range c-term range 16 unspecified role unspecified role prey prey physical association physical association Fig2A nop56-1 1 30 unspecified role unspecified role prey prey 14 unspecified role unspecified role prey prey 35 unspecified role unspecified role prey prey 15 unspecified role unspecified role prey prey 32 unspecified role unspecified role prey prey 20 unspecified role unspecified role prey prey 27 unspecified role unspecified role prey prey 10 unspecified role unspecified role prey prey 34 unspecified role unspecified role prey prey 9 unspecified role unspecified role prey prey 29 unspecified role unspecified role prey prey 5 unspecified role unspecified role prey prey 8 unspecified role unspecified role bait bait tag tap tagged calmodulin binding peptide plus protein a tag CBP-ProtA tagged CBP-ProtA tagged tap tagged c-term range C-terminal range c-term range c-term range C-terminal range c-term range 16 unspecified role unspecified role prey prey physical association physical association Fig2A nop58-8 1 10 unspecified role unspecified role prey prey 34 unspecified role unspecified role prey prey 33 unspecified role unspecified role prey prey 22 unspecified role unspecified role prey prey 28 unspecified role unspecified role prey prey 9 unspecified role unspecified role prey prey 29 unspecified role unspecified role prey prey 5 unspecified role unspecified role prey prey 24 unspecified role unspecified role prey prey 19 unspecified role unspecified role prey prey 11 unspecified role unspecified role prey prey 14 unspecified role unspecified role prey prey 17 unspecified role unspecified role bait bait tag tap tagged calmodulin binding peptide plus protein a tag CBP-ProtA tagged CBP-ProtA tagged tap tagged c-term range C-terminal range c-term range c-term range C-terminal range c-term range 32 unspecified role unspecified role prey prey 13 unspecified role unspecified role prey prey 20 unspecified role unspecified role prey prey 27 unspecified role unspecified role prey prey 21 unspecified role unspecified role prey prey 23 unspecified role unspecified role prey prey 2 unspecified role unspecified role prey prey 18 unspecified role unspecified role prey prey 25 unspecified role unspecified role prey prey 3 unspecified role unspecified role prey prey 6 unspecified role unspecified role prey prey 7 unspecified role unspecified role prey prey 6 unspecified role unspecified role prey prey physical association physical association Fig2A