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  <entry>
    <source releaseDate="2022-02-03">
      <names>
        <shortLabel>MINT</shortLabel>
        <fullName>MINT, Dpt of Biology, University of Rome Tor Vergata</fullName>
        <alias type="synonym" typeAc="MI:1041">MINT</alias>
      </names>
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      <attributeList>
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        <attribute name="definition">The Molecular INTeraction database (MINT) is a relational database designed to store interactions between biological molecules.</attribute>
        <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it</attribute>
      </attributeList>
    </source>
    <experimentList>
      <experimentDescription id="1">
        <names>
          <fullName>Structural and mutational analysis of substrate recognition in kojibiose phosphorylase.</fullName>
        </names>
        <bibref>
          <xref>
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          <attributeList>
            <attribute name="publication title" nameAc="MI:1091">Structural and mutational analysis of substrate recognition in kojibiose phosphorylase.</attribute>
            <attribute name="journal" nameAc="MI:0885">FEBS J. (1742-464X)</attribute>
            <attribute name="publication year" nameAc="MI:0886">2013</attribute>
            <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
            <attribute name="author-list" nameAc="MI:0636">Okada S., Yamamoto T., Watanabe H., Nishimoto T., Chaen H., Fukuda S., Wakagi T., Fushinobu S.</attribute>
            <attribute name="contact-email" nameAc="MI:0634">asfushi@mail.ecc.u-tokyo.ac.jp</attribute>
            <attribute name="author-announcement">13-Jan-2014: Contacted by IntAct-Help.</attribute>
            <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
            <attribute name="imex curation" nameAc="MI:0959"/>
          </attributeList>
        </bibref>
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        </xref>
        <hostOrganismList>
          <hostOrganism ncbiTaxId="-1">
            <names>
              <shortLabel>in vitro</shortLabel>
              <fullName>In vitro</fullName>
            </names>
          </hostOrganism>
        </hostOrganismList>
        <interactionDetectionMethod>
          <names>
            <shortLabel>x-ray diffraction</shortLabel>
            <fullName>x-ray crystallography</fullName>
            <alias type="go synonym" typeAc="MI:0303">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">X-ray</alias>
            <alias type="synonym" typeAc="MI:1041">x-ray diffraction</alias>
          </names>
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        </interactionDetectionMethod>
        <participantIdentificationMethod>
          <names>
            <shortLabel>predetermined</shortLabel>
            <fullName>predetermined participant</fullName>
            <alias type="synonym" typeAc="MI:1041">predetermined</alias>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
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        </participantIdentificationMethod>
        <attributeList>
          <attribute name="contact-email" nameAc="MI:0634">asfushi@mail.ecc.u-tokyo.ac.jp</attribute>
          <attribute name="accepted">Accepted 2013-NOV-18 by LUANA</attribute>
          <attribute name="publication year" nameAc="MI:0886">2013</attribute>
          <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
        </attributeList>
      </experimentDescription>
    </experimentList>
    <interactorList>
      <interactor id="2">
        <names>
          <shortLabel>a4xgp2_cals8</shortLabel>
          <alias type="locus name" typeAc="MI:0305">Csac_0439</alias>
        </names>
        <xref>
          <primaryRef db="uniprotkb" dbAc="MI:0486" id="A4XGP2" version="TrEMBL_34" refType="identity" refTypeAc="MI:0356"/>
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          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR011013"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005194"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005195"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005196"/>
          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR017045"/>
          <secondaryRef db="refseq" dbAc="MI:0481" id="WP_011916030.1"/>
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          <secondaryRef db="interpro" dbAc="MI:0449" id="IPR037018"/>
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          <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3WIR" version="TrEMBL_77"/>
        </xref>
        <interactorType>
          <names>
            <shortLabel>protein</shortLabel>
            <fullName>protein</fullName>
          </names>
          <xref>
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            <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
          </xref>
        </interactorType>
        <organism ncbiTaxId="351627">
          <names>
            <shortLabel>cals8</shortLabel>
            <fullName>Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)</fullName>
          </names>
        </organism>
        <sequence>MKLSEREWLIEQDKLEASGKFETCFALTNGYIGIRGINEEVFCEETPGTYIAGVFDKSTAQVTELVNLPNPIGLRIYINREFLNPLKCEILEFKRVLDLKQGILYRKLRLKDVKGRITTIEGFRFVSMNNKNLIVQKYDVVCENYSAVLNVESFIDATTVNSKDVPNDRVKHYEIDKKKDFADGIYLGITTKDKKYKVGIASSTKVLLNNQRCYFNRFTKDLGYIITENFEVEAKQGERYEIEKLTVLVSSREKNVGDVFETCTNKLKEFETKSAEKLLFEHIEEYKRLWDVANIDIVGDEVANKSVKFNIFHLISMANPEDEHVSLGAKGLHGEGYKGHVFWDTEIFMLPFYIYTNPAAAKAMLMYRYNLLDAARENARKNGYKGAQFPWESADTGEEETPKWGYDYLGNPVRIWTGDIEYHISADIAYAVMNYVRATDDIDFLLNYGSEIIIETARFWASICKYNKEKGRYEINDVIGPDEFHEHCNNNAYTNYLAKWNLLKASELCNLLLEKYPKYFEKLSKKINLSDEEPFVWQEIASKIYIPYHPDKKLIEQFEGYFNLKDFVIKEYDQNNMPVWPEGVELDKLNNYQLIKQADVVMLLYLLGEEFDDQTKKINYDYYEKRTMHKSSLSPSIYALMGVRVGETNRAYINFMRTALTDLEDNQGNTHLGIHAASLGGTWQALVFGFGGISIEKDDVLSVNPWLPEKWESLKFSIWWKGNLLDFKITKDNVEVKKRVEKGNVKLKIKGQEAII</sequence>
        <attributeList>
          <attribute name="crc64">9666D2B21B66B228</attribute>
        </attributeList>
      </interactor>
    </interactorList>
    <interactionList>
      <interaction id="3" imexId="IM-21818-1">
        <names>
          <shortLabel>a4xgp2</shortLabel>
        </names>
        <xref>
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        </xref>
        <experimentList>
          <experimentRef>1</experimentRef>
        </experimentList>
        <participantList>
          <participant id="4">
            <names>
              <alias type="author assigned name" typeAc="MI:0345">CsKP</alias>
            </names>
            <xref>
              <primaryRef db="rcsb pdb" dbAc="MI:0460" id="3WIR"/>
              <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3WIQ"/>
            </xref>
            <interactorRef>2</interactorRef>
            <participantIdentificationMethodList>
              <participantIdentificationMethod>
                <names>
                  <shortLabel>predetermined</shortLabel>
                  <fullName>predetermined participant</fullName>
                  <alias type="synonym" typeAc="MI:1041">predetermined</alias>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
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              </participantIdentificationMethod>
              <participantIdentificationMethod>
                <names>
                  <shortLabel>predetermined</shortLabel>
                  <fullName>predetermined participant</fullName>
                  <alias type="synonym" typeAc="MI:1041">predetermined</alias>
                </names>
                <xref>
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              </participantIdentificationMethod>
            </participantIdentificationMethodList>
            <biologicalRole>
              <names>
                <shortLabel>unspecified role</shortLabel>
                <fullName>unspecified role</fullName>
              </names>
              <xref>
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              </xref>
            </biologicalRole>
            <experimentalRoleList>
              <experimentalRole>
                <names>
                  <shortLabel>neutral component</shortLabel>
                  <fullName>neutral component</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0497" refType="identity" refTypeAc="MI:0356"/>
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              </experimentalRole>
            </experimentalRoleList>
            <experimentalPreparationList>
              <experimentalPreparation>
                <names>
                  <shortLabel>purified</shortLabel>
                  <fullName>purified</fullName>
                </names>
                <xref>
                  <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0350" refType="identity" refTypeAc="MI:0356"/>
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                </xref>
              </experimentalPreparation>
            </experimentalPreparationList>
            <stoichiometry value="2"/>
          </participant>
        </participantList>
        <interactionType>
          <names>
            <shortLabel>direct interaction</shortLabel>
            <fullName>direct interaction</fullName>
          </names>
          <xref>
            <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
            <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
          </xref>
        </interactionType>
        <attributeList>
          <attribute name="figure legend" nameAc="MI:0599">f1c t1</attribute>
          <attribute name="comment" nameAc="MI:0612">The crystal structure of CsKP was solved by molecular replacement using the LbMP&#xd;
structure (1H54) as the search model. The complex structure with glucose and Pi (Glc-PO4)&#xd;
was determined at 2.05 Å resolution (Table 1). The Glc-PO4 crystal belongs to the space group&#xd;
P1 and contains four CsKP molecules per asymmetric unit. The atoms in all four chains are&#xd;
almost identical, as the root mean square deviations (RMSDs) for Cα atoms between all pairs&#xd;
are within 0.24 Å. We therefore describe chain A unless otherwise noted. The complex&#xd;
structure with kojibiose and sulfate ion (kojibiose-SO4) was determined at 2.80 Å resolution.&#xd;
The kojibiose-SO4 crystal belongs to the space group I422 and contains one CsKP molecule in&#xd;
the asymmetric unit. The main chain trace of the kojibiose-SO4 structure is almost identical to&#xd;
the Glc-PO4 structure, as RMSDs for Cα atoms to the all four chains are less than 0.36 Å.</attribute>
        </attributeList>
      </interaction>
    </interactionList>
  </entry>
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