IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. J. Biol. Chem. (0021-9258) 2004 Peltier JB., Ripoll DR., Friso G., Rudella A., Cai Y., Ytterberg J., Giacomelli L., Pillardy J., van Wijk KJ. jp269@cornell.edu arath-leaf Arabidopsis thaliana leaf leaf leaf biochemical biochemical sequence tag sequence tag identification sequence tag Peltier JB., Ripoll DR., Friso G., Rudella A., Cai Y., Ytterberg J., Giacomelli L., Pillardy J., van Wijk KJ. jp269@cornell.edu Accepted 2010-JAN-10 by SKERRIEN (applied to all records created before 2005-Sep-01). J. Biol. Chem. (0021-9258) 2004 clpr1_arath ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic Protein SUPPRESSOR OF VARIEGATION 2 SVR2 nClpP5 F2J10.14 CLPR1 At1g49970 NCLPP5 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MATALVSPLTSQLNHEAVCSKFVLPKSPFMSGSKLFSSNMPCSTVPRRTRRSHCFASAKDMSFDHIPKQFRGDNLKDGVMQNFKNVPQYFYGLNSAQMDMFMTEDSPVRRQAEKVTEESISSRNNYLNNGGIWSMSGMNAADARRYSMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKRDYDGTLAQRAMRPGGGSPAAPAGLR 9422999CF20FA1FC clpr2_arath ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic CLPR2 NCLPP2 F5O11.13 At1g12410 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSGTGKASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDESAGLG DAD1CFDDD3478308 clpp6_arath ATP-dependent Clp protease proteolytic subunit 6, chloroplastic NCLPP1 NCLPP6 Endopeptidase ClpP6 nClpP1 F25C20.10 CLPP6 At1g11750 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAGLAISPPLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNKAPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 5565ADB698D0C776 clpp1_arath Chloroplastic ATP-dependent Clp protease proteolytic subunit 1 ClpP Endopeptidase ClpP1 clpP1 AtCg00670 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSATEAQAYGIVDLVAVQ 2BB430CFB5B5F609 clpt2_arath ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic CLPT2 CLPS2 F16J13.130 At4g12060 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAAHSSCNFALTNPIISQIDSFSKKKLSVPLYFFSTRKALTNPWLGVVDSSLSLTSPVSALQTNRPRRIHKSAISSLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELESFASESGFLDE 92961CCDDDF3DFAB clpp5_arath ATP-dependent Clp protease proteolytic subunit 5, chloroplastic Endopeptidase ClpP5 nClpP1 T14P4.12 CLPP5 NCLPP1 NCLPP5 At1g02560 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTNKLVSDRKNWKNSTPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQGPPPMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAAA 0B550019A2F6A33C clpt1_arath ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic CLPT1 CLPS1 nClpC-like protein T30C3.40 At4g25370 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MASYTVSFIPLTLSNPRIFVSRQNGSPSSSSRIPLTSSLLGKKLLATQPSHRCFVPKLRCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFKKQGQ 0CE01964D04E9215 clpp4_arath ATP-dependent Clp protease proteolytic subunit 4, chloroplastic NCLPP3 NCLPP4 Endopeptidase ClpP4 nClpP3 MFC19.5 CLPP4 At5g45390 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MGTLSLSSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 227B514CF1C1CE4C clpr3_arath ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic At1g09130 CLPR3 NCLPP8 nClpP8 F7G19.1 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILWRGQEKIIADVVPSEEFDKNAGIKSVV 363C4ECE368523D6 clpr4_arath ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic CLPR4 HON5 Protein HAPPY ON NORFLURAZON 5 FCAALL.413 dl4550c At4g17040 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 7902D9ECF220B92F clpp3_arath ATP-dependent Clp protease proteolytic subunit 3, chloroplastic CLPP3 CLP NCLPP3 NCLPP4 Endopeptidase ClpP3 nClpP4 F4N21.19 T12I7.12 At1g66670 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEMSLRLASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPPPKTKVWDLWKVEGTKKDNTNLPSERSMTQNGYAAIE 0D2D0D3D1118AA0D clpp-nclpp5-1 1 4 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 2 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 5 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 7 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 6 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 11 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 12 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 3 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 9 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 10 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf 8 unspecified role unspecified role neutral component neutral component arath-leaf Arabidopsis thaliana leaf leaf leaf physical association physical association The complex was purified from chloroplast stroma (5% loosely associated with thylakoid membrane). The stoichiometry is based on Coomassie and silver staining volumes normalised with the Lys, Arg, His and Tyr content in the different sequences