DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ van-2017-1 arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress 3d-em 3D electron microscopy 3D-EM electron tomog experimental particp experimental participant identification experimental particp van Bezouwen LS., Caffarri S., Kale RS., Kouřil R., Thunnissen AWH., Oostergetel GT., Boekema EJ. e.j.boekema@rug.nl Nature plants 2017 imex curation Only protein-protein interactions imex curation psbl_arath Photosystem II reaction center protein L psbL AtCg00560 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN mint psbh_arath Photosystem II reaction center protein H psbH Photosystem II 10 kDa phosphoprotein AtCg00710 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVN mint q9lmq2_arath Chlorophyll a-b binding protein, chloroplastic CHLOROPHYLL PROTEIN 24 CP24 LHCB6 F7H2.16 F7H2_16 At1g15820 At1g15820/F7H2.16 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALGL cb1c_arath Chlorophyll a-b binding protein 1, chloroplastic LHCB1.3 AB140 CAB1 F1N18.3 LHCII type I CAB-1 At1g29930 Chlorophyll a-b protein 140 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK cb5_arath Chlorophyll a-b binding protein CP26, chloroplastic LHCB5 LHCB5 LHCIIc Light-harvesting complex II protein 5 F24G24.140 At4g10340 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL cb4a_arath Chlorophyll a-b binding protein CP29.1, chloroplastic LHCB4.1 LHCII protein 4.1 LHCB4.1 F7A7_50 At5g01530 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS psbz_arath Photosystem II reaction center protein Z psbZ ycf9 AtCg00300 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS q9ski3_arath PSBX photosystem II subunit X PSII-X T12H3.7 T12H3_7 At2g06520 At2g06520/T12H3.7 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MASTSAMSLVTPLNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKRT psbw_arath Photosystem II reaction center W protein, chloroplastic PSII 6.1 kDa protein T6B20.8 At2g30570 PSBW protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL psbt_arath Photosystem II reaction center protein T psbT ycf8 AtCg00690 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEALVYTFLLVSTLGIIFFAIFFREPPKISTKK psbo1_arath Oxygen-evolving enhancer protein 1-1, chloroplastic 33 kDa subunit of oxygen evolving system of photosystem II OEC 33 kDa subunit 33 kDa thylakoid membrane protein Manganese-stabilizing protein 1 PSBO1 PSBO At5g66570 K1F13.25 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAASLQSTATFLQSAKIATAPSRGSSHLRSTQAVGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFTGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE psbm_arath Photosystem II reaction center protein M psbM AtCg00220 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MEVNILAFIATALFILVPTAFLLIIYVKTVSQND psbk_arath Photosystem II reaction center protein K psbK AtCg00070 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR psbi_arath Photosystem II reaction center protein I PSII 4.8 kDa protein AtCg00080 psbI protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE psbf_arath Cytochrome b559 subunit beta PSII reaction center subunit VI AtCg00570 psbF protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR psbe_arath Cytochrome b559 subunit alpha PSII reaction center subunit V AtCg00580 psbE protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF psbd_arath Photosystem II D2 protein psbD Photosystem Q(A) protein AtCg00270 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL psbc_arath Photosystem II CP43 reaction center protein psbC PSII 43 kDa protein AtCg00280 Protein CP-43 CP43 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MKTLYSLRRFYHVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN psbb_arath Photosystem II CP47 reaction center protein PSII 47 kDa protein Protein CP-47 AtCg00680 psbB protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSLSEAWAKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRQAV psba_arath Photosystem II protein D1 psbA Photosystem II Q(B) protein AtCg00020 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSTNG chlorophyll protein 24-lhcb1.3-1 4053604 N/A 4053605 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053606 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053607 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053608 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 12.0 N/A 4053609 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053610 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053611 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053612 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053613 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053614 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053615 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053616 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053617 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053618 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053619 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053620 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053621 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053622 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053623 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 N/A 4053624 predetermined predetermined participant predetermined structure determination identification by structure determination identification by structure determination structure determination unspecified role unspecified role neutral component neutral component purified purified Stoichiometry: 2.0 physical association physical association false false false Fig 4, Supplementary Fig 1-4