DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ seweryn-2015-1 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. DIP original experiment: DIP-267080X Nature 2015 IMEx Structural insights into the bacterial carbon-phosphorus lyase machinery. Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. Only protein-protein interactions imex curation seweryn-2015-2 ecolx Escherichia coli tem transmission electron microscopy tem predetermined predetermined participant predetermined Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. DIP original experiment: DIP-267083X Nature 2015 IMEx Structural insights into the bacterial carbon-phosphorus lyase machinery. Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. Only protein-protein interactions imex curation seweryn-2015-3 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. DIP original experiment: DIP-267082X Nature 2015 IMEx Structural insights into the bacterial carbon-phosphorus lyase machinery. Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. Only protein-protein interactions imex curation seweryn-2015-4 ecolx Escherichia coli x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. DIP original experiment: DIP-267081X Nature 2015 IMEx Structural insights into the bacterial carbon-phosphorus lyase machinery. Seweryn P., Van LB., Kjeldgaard M., Russo CJ., Passmore LA., Hove-Jensen B., Jochimsen B., Brodersen DE. Only protein-protein interactions imex curation phnj_ecoli Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase phnJ b4098 JW4059 protein protein ecoli Escherichia coli (strain K12) MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVIGESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEPCAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAKNQ phni_ecoli Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI Ribose 1-methylphosphonate 5-triphosphate synthase nucleosidase subunit JW4060 b4099 phnI protein protein ecoli Escherichia coli (strain K12) MYVAVKGGEKAIDAAHALQESRRRGDTDLPELSVAQIEQQLNLAVDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTGMRLERRISAVYKDIPGGQLLGPTYDYTHRLLDFTLLANGEAPTLTTADSEQQPSPHVFSLLARQGLAKFEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRNHPFAGEIRSGYIDVSIVPEELGFAVNVGELLMTECEMVNGFIDPPGEPPHFTRGYGLVFGMSERKAMAMALVDRALQAPEYGEHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQQEQNHG phng_ecoli Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG JW4062 b4101 phnG protein protein ecoli Escherichia coli (strain K12) MHADTATRQHWMSVLAHSQPAELAARLNALNITADYEVIRAAETGLVQIQARMGGTGERFFAGDATLTRAAVRLTDGTLGYSWVQGRDKQHAERCALIDALMQQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA phnh_ecoli Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH JW4061 b4100 phnH protein protein ecoli Escherichia coli (strain K12) MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPLNIATTSVLLTLADNDTPVWLSTPLNNDIVNQSLRFHTNAPLVSQPEQATFAVTDEAISSEQLNALSTGTAVAPEAGATLILQVASLSGGRMLRLTGAGIAEERMIAPQLPECILHELTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC phnk_ecoli Putative phosphonates utilization ATP-binding protein PhnK JW5727 b4097 phnK protein protein ecoli Escherichia coli (strain K12) MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN phng-phnh-6 3282270 N/A 3282274 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282275 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282276 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282277 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli physical association physical association false false false phng-phnh-7 3282271 N/A 3282278 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282274 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282275 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282276 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282277 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli physical association physical association false false false phng-phnh-8 3282272 N/A 3282278 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282274 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282275 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282276 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282277 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli physical association physical association false false false phng-phnh-9 3282273 N/A 3282274 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282275 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282276 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3282277 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli physical association physical association false false false