DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ rufener-2013-1 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253020X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-2 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253024X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-3 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253018X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-4 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253027X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-5 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253019X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-6 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253022X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-7 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253029X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-8 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253021X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-9 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253026X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-10 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253025X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-11 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Rufener SC., Mühlemann O. DIP original experiment: DIP-253023X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation rufener-2013-12 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip anti tag western anti tag western blot anti tag western Rufener SC., Mühlemann O. DIP original experiment: DIP-253028X Nature structural & molecular biology 2013 IMEx eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Rufener SC., Mühlemann O. Only protein-protein interactions imex curation if4g1_human Eukaryotic translation initiation factor 4 gamma 1 p220 EIF4G1 EIF4G EIF4GI EIF4F protein protein human Homo sapiens Human MNKAPQSTGPPPAPSPGLPQPAFPPGQTAPVVFSTPQATQMNTPSQPRQHFYPSRAQPPSSAASRVQSAAPARPGPAAHVYPAGSQVMMIPSQISYPASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQQFPTGVAPTPVLMNQPPQIAPKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQTGGGLEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQMSVEESTPISRETGEPYRLSPEPTPLAEPILEVEVTLSKPVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDKIHNAENIQPGEQKYEYKSDQWKPLNLEEKKRYDREFLLGFQFIFASMQKPEGLPHISDVVLDKANKTPLRPLDPTRLQGINCGPDFTPSFANLGRTTLSTRGPPRGGPGGELPRGPAGLGPRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPPISRGLPLVDDGGWNTVPISKGSRPIDTSRLTKITKPGSIDSNNQLFAPGGRLSWGKGSSGGSGAKPSDAASEAARPATSTLNRFSALQQAVPTESTDNRRVVQRSSLSRERGEKAGDRGDRLERSERGGDRGDRLDRARTPATKRSFSKEVEERSRERPSQPEGLRKAASLTEDRDRGRDAVKREAALPPVSPLKAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGLSWKEFLPEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFKWLREAEEESDHN if4e_human Eukaryotic translation initiation factor 4E mRNA cap-binding protein eIF-4F 25 kDa subunit EIF4E EIF4EL1 EIF4F protein protein human Homo sapiens Human MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV pabp1_human Polyadenylate-binding protein 1 PABPC1 PAB1 PABP1 PABPC2 PABP protein protein human Homo sapiens Human MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV rent1_human Regulator of nonsense transcripts 1 UPF1 RENT1 KIAA0221 ATP-dependent helicase RENT1 Nonsense mRNA reducing factor 1 Up-frameshift suppressor 1 homolog protein protein human Homo sapiens Human MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY ncbp1_human Nuclear cap-binding protein subunit 1 NCBP1 CBP80 NCBP 80 kDa nuclear cap-binding protein protein protein human Homo sapiens Human MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA p52298-1 Nuclear cap-binding protein subunit 2 NCBP2 CBP20 20 kDa nuclear cap-binding protein Cell proliferation-inducing gene 55 protein NCBP 20 kDa subunit NCBP-interacting protein 1 PIG55 protein protein human Homo sapiens Human MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ pabp2_human Polyadenylate-binding protein 2 PABPN1 PAB2 PABP2 Poly(A)-binding protein II Polyadenylate-binding nuclear protein 1 Nuclear poly(A)-binding protein 1 protein protein human Homo sapiens Human MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY eif4e-eif4g1-7 3254068 N/A 3254080 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254081 unspecified role unspecified role bait bait human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false eif4e-eif4g1-8 3254069 N/A 3254080 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254081 unspecified role unspecified role bait bait human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false ncbp1-ncbp2-10 3254070 N/A 3254085 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role bait bait human Homo sapiens Human physical association physical association false false false pabpc1-eif4e-1 3254071 N/A 3254081 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254082 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human physical association physical association false false false ncbp1-ncbp2-11 3254072 N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254085 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role bait bait human Homo sapiens Human association association false false false ncbp1-pabpc1-1 3254073 N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role bait bait human Homo sapiens Human association association false false false pabpn1-ncbp1-1 3254074 N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254086 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false eif4e-eif4g1-9 3254075 N/A 3254080 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254081 unspecified role unspecified role bait bait human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false pabpc1-eif4e-2 3254076 N/A 3254081 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254082 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3254083 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false upf1-eif4e-1 3254077 N/A 3254081 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254083 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3254084 unspecified role unspecified role prey prey human Homo sapiens Human association association false false false ncbp1-pabpc1-2 3254078 N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human N/A 3254084 unspecified role unspecified role bait bait human Homo sapiens Human physical association physical association false false false pabpn1-pabpc1-1 3254079 N/A 3254086 unspecified role unspecified role bait bait Flag-tag Flag-tag flag tag flag tag FLAG-tagged FLAG DYKDDDDKV epitope tag DYKDDDDKV epitope tag FLAG FLAG-tagged n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3254082 unspecified role unspecified role prey prey human Homo sapiens Human physical association physical association false false false