DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ niu-2012-7 yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast 2 hybrid two hybrid 2H 2h Gal4 transcription regeneration two-hybrid yeast two hybrid 2-hybrid classical two hybrid classical two hybrid 2H two-hybrid 2-hybrid Gal4 transcription regeneration 2h yeast two hybrid Y2H Y-2H 2 hybrid nucleotide sequence nucleotide sequence identification sequence cloning sequence cloning nucleotide sequence Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. DIP original experiment: DIP-251855X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection. Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. Only protein-protein interactions imex curation niu-2012-8 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip anti tag western anti tag western blot anti tag western Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. DIP original experiment: DIP-251857X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection. Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. Only protein-protein interactions imex curation niu-2012-9 human Homo sapiens Human anti tag coip anti tag coimmunoprecipitation anti tag coip anti tag western anti tag western blot anti tag western Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. DIP original experiment: DIP-251859X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection. Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. Only protein-protein interactions imex curation niu-2012-10 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip anti tag western anti tag western blot anti tag western Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. DIP original experiment: DIP-251856X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection. Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. Only protein-protein interactions imex curation niu-2012-11 human Homo sapiens Human anti bait coip anti bait coimmunoprecipitation anti bait coip anti tag western anti tag western blot anti tag western Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. DIP original experiment: DIP-251858X Proceedings of the National Academy of Sciences of the United States of America 2012 IMEx Autophagosomes induced by a bacterial Beclin 1 binding protein facilitate obligatory intracellular infection. Niu H., Xiong Q., Yamamoto A., Hayashi-Nishino M., Rikihisa Y. Only protein-protein interactions imex curation becn1_human Beclin-1 Coiled-coil myosin-like BCL2-interacting protein Protein GT197 BECN1 GT197 protein protein human Homo sapiens Human MEGSKTSNNSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEETNSGEEPFIETPRQDGVSRRFIPPARMMSTESANSFTLIGEASDGGTMENLSRRLKVTGDLFDIMSGQTDVDHPLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQMNEDDSEQLQMELKELALEEERLIQELEDVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFCLPYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQFYNK q2gjl5_anapz ats-1 APH_0859 protein protein anapz Anaplasma phagocytophilum (strain HZ) MLIRRILTTSRNVAARIVSGFTAPATENTSARTSRNLLGTTGNFFNGLMGKGKPFYHRASEMQNLPWDKERGTKISSHYAQTGQLVLQIGDGRVSEGALQMLEALDNSDVGELDPSSKGLNPGMDIGARMDHNRAKNECGALLDLRKKLEETGGKISVERTGDGFTRMLVIKIDTKNKSEEEVEKEVQLVLGTLGVGSKILAKSIAKELMHQAKTKDMNALAPVSHTPPAQSKPDSDIQENSEKSASADAKNRSQAPDQEENSPRDTTRRNSTTNGEERIFSLSGDASPSRPSSGAGTDQAVQQAHFLRDSEDRVHGSSGITNQGAAAMQQAVLSAARGLSDVSHDDSAQTQGNPTVTPLVSAQNRGPETHGKGTR bakor_human Beclin 1-associated autophagy-related key regulator KIAA0831 Autophagy-related protein 14-like protein ATG14 ATG14L protein protein human Homo sapiens Human MASPSGKGARALEAPGCGPRPLARDLVDSVDDAEGLYVAVERCPLCNTTRRRLTCAKCVQSGDFVYFDGRDRERFIDKKERLSRLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR ats_1-becn1-1 3247908 N/A 3247913 unspecified role unspecified role prey prey Region 191-327 Region 191-327 sufficient to bind sufficient binding region sufficient to bind full dna sequence full identification by DNA sequencing full dna sequence certain certain sequence position certain certain certain sequence position certain false Region 396-450 Region 396-450 sufficient to bind sufficient binding region sufficient to bind full dna sequence full identification by DNA sequencing full dna sequence certain certain sequence position certain certain certain sequence position certain false yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast N/A 3247914 unspecified role unspecified role bait bait yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast direct interaction direct interaction false false false ats_1-becn1-2 3247909 N/A 3247913 unspecified role unspecified role prey prey HA-tag HA-tag ha tag ha tag YPYDVPDYA epitope tag YPYDVPDYA epitope tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false Region 1-272 Region 1-272 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false human Homo sapiens Human N/A 3247914 unspecified role unspecified role bait bait Region 90-250 Region 90-250 sufficient to bind sufficient binding region sufficient to bind deletion analysis deletion analysis certain certain sequence position certain certain certain sequence position certain false GFP-tag GFP-tag gfp tag green fluorescent protein tag GFP green fluorescent protein GFP green fluorescent protein gfp tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false human Homo sapiens Human physical association physical association false false false becn1-ats_1-1 3247910 N/A 3247913 unspecified role unspecified role bait bait HA-tag HA-tag ha tag ha tag YPYDVPDYA epitope tag YPYDVPDYA epitope tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false Region 1-272 Region 1-272 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false human Homo sapiens Human N/A 3247914 unspecified role unspecified role prey prey GFP-tag GFP-tag gfp tag green fluorescent protein tag GFP green fluorescent protein GFP green fluorescent protein gfp tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false Region 90-250 Region 90-250 sufficient to bind sufficient binding region sufficient to bind certain certain sequence position certain certain certain sequence position certain false human Homo sapiens Human physical association physical association false false false ats_1-becn1-3 3247911 N/A 3247913 unspecified role unspecified role prey prey HA-tag HA-tag ha tag ha tag YPYDVPDYA epitope tag YPYDVPDYA epitope tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3247914 unspecified role unspecified role bait bait human Homo sapiens Human physical association physical association false false false ats_1-atg14-1 3247912 N/A 3247915 unspecified role unspecified role prey prey HA-tag HA-tag ha tag ha tag YPYDVPDYA epitope tag YPYDVPDYA epitope tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false human Homo sapiens Human N/A 3247914 unspecified role unspecified role bait bait Region 1-17 Region 1-17 required to bind necessary binding region required to bind deletion analysis deletion analysis certain certain sequence position certain certain certain sequence position certain false GFP-tag GFP-tag gfp tag green fluorescent protein tag GFP green fluorescent protein GFP green fluorescent protein gfp tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false human Homo sapiens Human physical association physical association false false false