<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<entrySet level="2" version="5" minorVersion="4" xsi:schemaLocation="http://psi.hupo.org/mi/mif http://psidev.sourceforge.net/mi/rel25/src/MIF254.xsd" xmlns="http://psi.hupo.org/mi/mif" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <entry>
        <source releaseDate="2017-08-31+01:00">
            <names>
                <shortLabel>DIP</shortLabel>
                <fullName>Database of Interacting Proteins</fullName>
            </names>
            <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1579232" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14681454" refType="primary-reference" refTypeAc="MI:0358"/>
            </xref>
            <attributeList>
                <attribute name="postaladdress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
                <attribute name="url" nameAc="MI:0614">http://dip.doe-mbi.ucla.edu/</attribute>
                <attribute name="contact-email" nameAc="MI:0634">dip@mbi.ucla.edu</attribute>
                <attribute name="postalAddress">611 Young Drive East; Los Angeles CA 90095; USA</attribute>
                <attribute name="url">http://dip.doe-mbi.ucla.edu/</attribute>
            </attributeList>
        </source>
        <experimentList>
            <experimentDescription id="3230374">
                <names>
                    <shortLabel>lintz-2011-1</shortLabel>
                </names>
                <bibref>
                    <xref>
                        <primaryRef db="pubmed" dbAc="MI:0446" id="21911405" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </bibref>
                <xref>
                    <primaryRef db="dip" dbAc="MI:0465" id="DIP-249701X" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="wwpdb" dbAc="MI:0805" id="3SZT" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="doi" dbAc="MI:0574" id="10.1073/pnas.1112398108" refType="primary-reference" refTypeAc="MI:0358"/>
                    <secondaryRef db="imex" dbAc="MI:0670" id="IM-17779" refType="imex-primary" refTypeAc="MI:0662"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15943972" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <hostOrganismList>
                    <hostOrganism ncbiTaxId="562">
                        <names>
                            <shortLabel>ecolx</shortLabel>
                            <fullName>Escherichia coli</fullName>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>x-ray diffraction</shortLabel>
                        <fullName>x-ray crystallography</fullName>
                        <alias typeAc="MI:0303" type="go synonym">X-ray</alias>
                        <alias typeAc="MI:1041" type="synonym">X-ray</alias>
                        <alias typeAc="MI:1041" type="synonym">x-ray diffraction</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0114" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1272" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </interactionDetectionMethod>
                <participantIdentificationMethod>
                    <names>
                        <shortLabel>predetermined</shortLabel>
                        <fullName>predetermined participant</fullName>
                        <alias typeAc="MI:1041" type="synonym">predetermined</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </participantIdentificationMethod>
                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Lintz MJ., Oinuma K., Wysoczynski CL., Greenberg EP., Churchill ME.</attribute>
                    <attribute name="comment" nameAc="MI:0612">DIP original experiment: DIP-249701X</attribute>
                    <attribute name="journal" nameAc="MI:0885">Proceedings of the National Academy of Sciences of the United States of America</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2011</attribute>
                    <attribute name="curation depth" nameAc="MI:0955">IMEx</attribute>
                    <attribute name="title" nameAc="MI:1091">Crystal structure of QscR, a Pseudomonas aeruginosa quorum sensing signal receptor.</attribute>
                    <attribute name="author-list" nameAc="MI:0636">Lintz MJ.,  Oinuma K.,  Wysoczynski CL.,  Greenberg EP.,  Churchill ME.</attribute>
                    <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
                    <attribute name="imex curation" nameAc="MI:0959"/>
                    <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
                </attributeList>
            </experimentDescription>
        </experimentList>
        <interactorList>
            <interactor id="3230375">
                <names>
                    <shortLabel>q9rms5_pseai</shortLabel>
                    <alias typeAc="MI:0306" type="orf name">IPC737_29575</alias>
                    <alias typeAc="MI:0306" type="orf name">DT376_23495</alias>
                    <alias typeAc="MI:0306" type="orf name">ECC04_019105</alias>
                    <alias typeAc="MI:0306" type="orf name">E4V10_12590</alias>
                    <alias typeAc="MI:0306" type="orf name">CAZ10_26210</alias>
                    <alias typeAc="MI:0301" type="gene name">phzR</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">qscR</alias>
                    <alias typeAc="MI:0306" type="orf name">PAMH19_5306</alias>
                    <alias typeAc="MI:0306" type="orf name">ALP65_03645</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC116_18515</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC1316_10625</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC1339_17030</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC1598_18230</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC29_09655</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC614_32130</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC90_26725</alias>
                    <alias typeAc="MI:0306" type="orf name">IPC1323_26100</alias>
                    <alias typeAc="MI:0306" type="orf name">NCTC13621_00173</alias>
                </names>
                <xref>
                    <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q9RMS5" version="86" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="ensemblbacteria" id="C0044_14205" version="TrEMBL_167" refType="gene"/>
                    <secondaryRef db="ensemblbacteria" id="CEI20178" version="TrEMBL_167" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6CC0" version="TrEMBL_167"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="NP_250589.1"/>
                    <secondaryRef db="ensemblbacteria" id="DT376_23495" version="TrEMBL_167" refType="gene"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0006355" secondary="regulation of transcription, DNA-templated" version="TrEMBL_167"/>
                    <secondaryRef db="ensemblbacteria" id="CEI20178" version="TrEMBL_167" refType="transcript"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:1900377" secondary="negative regulation of secondary metabolite biosynthetic process" version="TrEMBL_167"/>
                    <secondaryRef db="ensemblbacteria" id="RCI72489" version="TrEMBL_167" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="ensemblbacteria" id="OTI57720" version="TrEMBL_167" refType="transcript"/>
                    <secondaryRef db="dip" dbAc="MI:0465" id="DIP-59711N"/>
                    <secondaryRef db="ensemblbacteria" id="PAMH19_5306" version="TrEMBL_167" refType="gene"/>
                    <secondaryRef db="ensemblbacteria" id="CAZ10_26210" version="TrEMBL_167" refType="gene"/>
                    <secondaryRef db="ensemblbacteria" id="PXB97875" version="TrEMBL_167" refType="transcript"/>
                    <secondaryRef db="ensemblbacteria" id="PXB97875" version="TrEMBL_167" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15943984" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="ensemblbacteria" id="RFJ76781" version="TrEMBL_167" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="uniprotkb" dbAc="MI:0486" id="Q7DCE1" refType="secondary-ac" refTypeAc="MI:0360"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR016032" version="TrEMBL_167"/>
                    <secondaryRef db="ensemblbacteria" id="OTI57720" version="TrEMBL_167" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0003677" secondary="DNA binding" version="TrEMBL_167"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR005143" version="TrEMBL_167"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="3SZT" version="TrEMBL_167"/>
                    <secondaryRef db="ensemblbacteria" id="RCI72489" version="TrEMBL_167" refType="transcript"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="WP_003118960.1"/>
                    <secondaryRef db="ensemblbacteria" id="DZ962_05695" version="TrEMBL_167" refType="gene"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036388" version="TrEMBL_167"/>
                    <secondaryRef db="ensemblbacteria" id="RFJ76781" version="TrEMBL_167" refType="transcript"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR000792" version="TrEMBL_167"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="6CBQ" version="TrEMBL_167"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0009372" secondary="quorum sensing" version="TrEMBL_167"/>
                    <secondaryRef db="uniprotkb" dbAc="MI:0486" id="A0A1S1BYB0" version="TrEMBL_163" refType="secondary-ac" refTypeAc="MI:0360"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036693" version="TrEMBL_167"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactorType>
                <organism ncbiTaxId="287">
                    <names>
                        <shortLabel>pseai</shortLabel>
                        <fullName>Pseudomonas aeruginosa</fullName>
                    </names>
                </organism>
                <sequence>MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN</sequence>
            </interactor>
        </interactorList>
        <interactionList>
            <interaction imexId="IM-17779-1" id="3230376">
                <names>
                    <shortLabel>phzr-1</shortLabel>
                </names>
                <xref>
                    <primaryRef db="dip" dbAc="MI:0465" id="DIP-189166E" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="psi-mi" dbAc="MI:0488" id="MI:0465" refType="imex source"/>
                    <secondaryRef db="imex" dbAc="MI:0670" id="IM-17779-1" refType="imex-primary" refTypeAc="MI:0662"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-15944010" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <experimentList>
                    <experimentRef>3230374</experimentRef>
                </experimentList>
                <participantList>
                    <participant id="3230377">
                        <names>
                            <shortLabel>N/A</shortLabel>
                        </names>
                        <xref>
                            <primaryRef db="intact" dbAc="MI:0469" id="EBI-15944014" refType="identity" refTypeAc="MI:0356"/>
                        </xref>
                        <interactorRef>3230375</interactorRef>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                            </xref>
                        </biologicalRole>
                        <experimentalRoleList>
                            <experimentalRole>
                                <names>
                                    <shortLabel>unspecified role</shortLabel>
                                    <fullName>unspecified role</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                    <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1383079" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <hostOrganismList>
                            <hostOrganism ncbiTaxId="562">
                                <names>
                                    <shortLabel>ecolx</shortLabel>
                                    <fullName>Escherichia coli</fullName>
                                </names>
                            </hostOrganism>
                        </hostOrganismList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>direct interaction</shortLabel>
                        <fullName>direct interaction</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
            </interaction>
        </interactionList>
    </entry>
</entrySet>
