DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ huang-2010-3 ecolx Escherichia coli pull down pull down predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219414X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-4 ecolx Escherichia coli electron microscopy electron microscopy Electron crystallography Electron cryomicroscopy Electron crystallography Electron cryomicroscopy predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219419X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-5 ecolx Escherichia coli pull down pull down predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219417X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-6 ecolx Escherichia coli pull down pull down predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219420X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-7 ecolx Escherichia coli x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219422X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-8 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219415X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-9 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219418X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-10 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219421X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation huang-2010-11 ecolx Escherichia coli x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. DIP original experiment: DIP-219416X Nature 2010 IMEx Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase. Huang CS., Sadre-Bazzaz K., Shen Y., Deng B., Zhou ZH., Tong L. Only protein-protein interactions imex curation pccb_rosdo Propionyl-CoA carboxylase beta chain pccB RD1_2028 protein protein rosdo Roseobacter denitrificans (strain ATCC 33942 / OCh 114) MKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKNIITGFIRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQPRSTRKRVARAFASLRNKSVQMPWKKHDNIPL pcca_ruepo Propionyl-CoA carboxylase alpha chain pccA SPO1101 protein protein ruepo Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) Silicibacter pomeroyi MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRRVAAAAAAMHRVAEIRRTRVSGRMDNHERRVGTEWVVTLQGADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE E9621118EF90D008 pccb_human Propionyl-CoA carboxylase beta chain, mitochondrial PCCB Propanoyl-CoA:carbon dioxide ligase subunit beta protein protein human Homo sapiens Human MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL pcca_human Propionyl-CoA carboxylase alpha chain, mitochondrial PCCA Propanoyl-CoA:carbon dioxide ligase subunit alpha protein protein human Homo sapiens Human MAGFWVGTAPLVAAGRRGRWPPQQLMLSAALRTLKHVLYYSRQCLMVSRNLGSVGYDPNEKTFDKILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQKVVEEAPSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRLQVEHPVTECITGLDLVQEMIRVAKGYPLRHKQADIRINGWAVECRVYAEDPYKSFGLPSIGRLSQYQEPLHLPGVRVDSGIQPGSDISIYYDPMISKLITYGSDRTEALKRMADALDNYVIRGVTHNIALLREVIINSRFVKGDISTKFLSDVYPDGFKGHMLTKSEKNQLLAIASSLFVAFQLRAQHFQENSRMPVIKPDIANWELSVKLHDKVHTVVASNNGSVFSVEVDGSKLNVTSTWNLASPLLSVSVDGTQRTVQCLSREAGGNMSIQFLGTVYKVNILTRLAAELNKFMLEKVTEDTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE q5lug0_ruepo pccB SPO1094 protein protein ruepo Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) Silicibacter pomeroyi MKDILSELETRREAARLGGGQKRIDAQHARGKLTARERIELLLDEDSFEEFDMFVSHRCTDFGMEKQRPAGDGVVTGWGTINGRMVYVFSQDFTVFGGSLSETHAQKICKIMDMAVQNGAPVIGINDSGGARIQEGVASLAGYAEVFQRNIMASGVVPQISVIMGPCAGGAVYSPAMTDFIFMVKDTSYMFVTGPDVVKTVTNEVVTAEELGGASTHTRKSSVADGAFENDVEALAEVRRLVDFLPLNNREKPPVRPFFDEPGRIEASLDTLVPENANTPYDMKELINKIADEGDFYEIQEDFAKNIITGFIRLEGQTVGVVANQPMILAGCLDIDSSRKAARFVRFCDCFEIPILTLVDVPGFLPGTSQEYGGVIKHGAKLLFAYGEATVPKVTVITRKAYGGAYDVMASKHLRGDFNYAWPTAEIAVMGAKGATEIIHRADLGDADKIAAHTKDYEGRFANPFVAAERGFIDEVIQPRSTRKRVSRAFASLRGKSLKNPWKKHDNIPL 070AEAE549EB9D37 pccb-rppcc_alpha-1 3212814 N/A 3212823 unspecified role unspecified role bait bait His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false ecolx Escherichia coli N/A 3212824 unspecified role unspecified role prey prey ecolx Escherichia coli physical association physical association false false false pcca-pccb-1 3212815 N/A 3212825 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212826 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false pccb-pcca-1 3212816 N/A 3212825 unspecified role unspecified role bait bait His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false ecolx Escherichia coli N/A 3212826 unspecified role unspecified role prey prey ecolx Escherichia coli physical association physical association false false false rppcc_beta-rppcc_alpha-1 3212817 N/A 3212827 unspecified role unspecified role bait bait His-tag His-tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false ecolx Escherichia coli N/A 3212824 unspecified role unspecified role prey prey ecolx Escherichia coli physical association physical association false false false rppcc_alpha-rppcc_beta-1 3212818 N/A 3212827 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212824 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false pccb-rppcc_alpha-2 3212819 N/A 3212823 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212824 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false pcca-pccb-2 3212820 N/A 3212825 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212826 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false rppcc_alpha-rppcc_beta-2 3212821 N/A 3212827 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212824 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false pccb-rppcc_alpha-3 3212822 N/A 3212823 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3212824 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false