DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ timmins-2009-1 in vitro In vitro far western blotting far western blotting Affinity blotting Affinity blotting western blot western blot Immuno blot Immuno blot Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. DIP original experiment: DIP-132092X Structure (London, England : 1993) 2009 IMEx Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. Only protein-protein interactions imex curation timmins-2009-2 ecolx Escherichia coli crosslink cross-linking study crosslink predetermined predetermined participant predetermined Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. DIP original experiment: DIP-132095X Structure (London, England : 1993) 2009 IMEx Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. Only protein-protein interactions imex curation timmins-2009-3 ecolx Escherichia coli x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. DIP original experiment: DIP-132096X Structure (London, England : 1993) 2009 IMEx Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. Only protein-protein interactions imex curation timmins-2009-4 ecolx Escherichia coli molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column predetermined predetermined participant predetermined Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. DIP original experiment: DIP-132093X Structure (London, England : 1993) 2009 IMEx Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. Only protein-protein interactions imex curation timmins-2009-5 ecolx Escherichia coli dls dynamic light scattering dls predetermined predetermined participant predetermined Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. DIP original experiment: DIP-132094X Structure (London, England : 1993) 2009 IMEx Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Timmins J., Gordon E., Caria S., Leonard G., Acajjaoui S., Kuo MS., Monchois V., McSweeney S. Only protein-protein interactions imex curation q9rti9_deira DNA helicase DR_1775 protein protein strain atcc 13939 /-9 Deinococcus radiodurans MTSSAGPDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPIEYRAKTWKQYRPTVPAATTAVKNTSPLTAELAYRGGEQVKHPKFGEGQVLAVAGVGERQEVTVHFASAGTKKLMVKFANLTKL A4946F40E5FCD309 q9ryw8_deira DR_A0188 protein protein strain atcc 13939 /-9 Deinococcus radiodurans MVTSSSMRRCRGALSLSFWIFLVLRSVLSRPVFGAAAGPAVQSARQCSASRGTGESDPPPFQPTLRLFPPSRRRRSYCRAMTPSRPSPDFPDGGFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFNQAGVPDVDAIDGLPPAVALQQARGTPTARSSVGSVTTLSNLLRMLYSRAGDYPPGQGIVYAEGFSPNTPEGACPECHGLGRVYTVTEDSMVPDPSLTIRERAVAAWPQAWGGQNQRDILVTLGIDVDVPWRELPEETRHWILFTDEQPVVPVYPGLTPAETQRALKKKMEPSYMGTFSSARRHVLHTFANTESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTEPHTPREPAGWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELQRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRAALR 3A94C2458A58906E druvra2-druvrb-1 3187081 N/A 3187086 unspecified role unspecified role prey prey ecolx Escherichia coli N/A 3187087 unspecified role unspecified role bait bait Region 81-922 Region 81-922 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false druvra2-1 3187082 N/A 3187087 unspecified role unspecified role unspecified role unspecified role Region 81-922 Region 81-922 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false druvra2-2 3187083 N/A 3187087 unspecified role unspecified role unspecified role unspecified role Region 81-922 Region 81-922 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false druvra2-3 3187084 N/A 3187087 unspecified role unspecified role unspecified role unspecified role Region 81-922 Region 81-922 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false druvra2-4 3187085 N/A 3187087 unspecified role unspecified role unspecified role unspecified role Region 81-922 Region 81-922 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false ecolx Escherichia coli direct interaction direct interaction false false false