DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ bingel_erlenmeyer-2008-1 in vitro In vitro x-ray diffraction x-ray crystallography X-ray X-ray x-ray diffraction predetermined predetermined participant predetermined Bingel-Erlenmeyer R., Kohler R., Kramer G., Sandikci A., Antolić S., Maier T., Schaffitzel C., Wiedmann B., Bukau B., Ban N. DIP original experiment: DIP-250270X Nature 2008 IMEx A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing. Bingel-Erlenmeyer R., Kohler R., Kramer G., Sandikci A., Antolić S., Maier T., Schaffitzel C., Wiedmann B., Bukau B., Ban N. Only protein-protein interactions imex curation bingel_erlenmeyer-2008-2 in vitro In vitro crosslink cross-linking study crosslink ms participant Identification by mass spectrometry ms participant Bingel-Erlenmeyer R., Kohler R., Kramer G., Sandikci A., Antolić S., Maier T., Schaffitzel C., Wiedmann B., Bukau B., Ban N. DIP original experiment: DIP-250271X Nature 2008 IMEx A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing. Bingel-Erlenmeyer R., Kohler R., Kramer G., Sandikci A., Antolić S., Maier T., Schaffitzel C., Wiedmann B., Bukau B., Ban N. Only protein-protein interactions imex curation rl22_ecoli 50S ribosomal protein L22 rplV eryB b3315 JW3277 Large ribosomal subunit protein uL22 protein protein ecoli Escherichia coli (strain K12) METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR def_ecoli Peptide deformylase def fms b3287 JW3248 Polypeptide deformylase protein protein ecoli Escherichia coli (strain K12) MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA rl17_ecoli 50S ribosomal protein L17 rplQ Large ribosomal subunit protein bL17 JW3256 b3294 protein protein ecoli Escherichia coli (strain K12) MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAAAE def-rplv-1 3168108 N/A 3168110 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3168111 unspecified role unspecified role unspecified role unspecified role Region 147-168 Region 147-168 binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false in vitro In vitro direct interaction direct interaction false false false def-rplq-1 3168109 N/A 3168112 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3168111 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false