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    <entry>
        <source releaseDate="2012-12-17Z">
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                <shortLabel>mpidb</shortLabel>
                <fullName>The Microbial Protein Interaction Database</fullName>
            </names>
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                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0903" refType="identity" refTypeAc="MI:0356"/>
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            </xref>
        </source>
        <experimentList>
            <experimentDescription id="1331798">
                <names>
                    <shortLabel>krishnakumar-2007-1</shortLabel>
                    <fullName>Structural properties of periplasmic SodCI that correlate with virulence in Salmonella enterica serovar Typhimurium.</fullName>
                </names>
                <bibref>
                    <xref>
                        <primaryRef db="pubmed" dbAc="MI:0446" id="17416645" refType="primary-reference" refTypeAc="MI:0358"/>
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                <hostOrganismList>
                    <hostOrganism ncbiTaxId="99287">
                        <names>
                            <shortLabel>salty</shortLabel>
                            <fullName>Salmonella typhimurium</fullName>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>molecular sieving</shortLabel>
                        <fullName>molecular sieving</fullName>
                        <alias typeAc="MI:0303" type="go synonym">Gel Filtration</alias>
                        <alias typeAc="MI:0303" type="go synonym">Size Exclusion Chromatography</alias>
                        <alias typeAc="MI:1041" type="synonym">Size Exclusion Chromatography</alias>
                        <alias typeAc="MI:1041" type="synonym">Gel Filtration</alias>
                        <alias typeAc="MI:1041" type="synonym">Sizing column</alias>
                    </names>
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                </interactionDetectionMethod>
                <participantIdentificationMethod>
                    <names>
                        <shortLabel>predetermined</shortLabel>
                        <fullName>predetermined participant</fullName>
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                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Krishnakumar R., Kim B., Mollo E.A., Imlay J.A., Slauch J.M.</attribute>
                    <attribute name="journal" nameAc="MI:0885">J. Bacteriol. (0021-9193)</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2007</attribute>
                    <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
                    <attribute name="imex curation" nameAc="MI:0959"/>
                    <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
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                <names>
                    <shortLabel>krishnakumar-2007-2</shortLabel>
                    <fullName>Structural properties of periplasmic SodCI that correlate with virulence in Salmonella enterica serovar Typhimurium.</fullName>
                </names>
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                <hostOrganismList>
                    <hostOrganism ncbiTaxId="-1">
                        <names>
                            <shortLabel>in vitro</shortLabel>
                            <fullName>In vitro</fullName>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>enzymatic footprint</shortLabel>
                        <fullName>enzymatic footprinting</fullName>
                        <alias typeAc="MI:1041" type="synonym">enzymatic footprint</alias>
                    </names>
                    <xref>
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                <participantIdentificationMethod>
                    <names>
                        <shortLabel>predetermined</shortLabel>
                        <fullName>predetermined participant</fullName>
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                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
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                </participantIdentificationMethod>
                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Krishnakumar R., Kim B., Mollo E.A., Imlay J.A., Slauch J.M.</attribute>
                    <attribute name="journal" nameAc="MI:0885">J. Bacteriol. (0021-9193)</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2007</attribute>
                    <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
                    <attribute name="imex curation" nameAc="MI:0959"/>
                    <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
                </attributeList>
            </experimentDescription>
        </experimentList>
        <interactorList>
            <interactor id="1331800">
                <names>
                    <shortLabel>sodc1_salty</shortLabel>
                    <fullName>Superoxide dismutase [Cu-Zn] 1</fullName>
                    <alias typeAc="MI:0302" type="gene name synonym">sodCI</alias>
                    <alias typeAc="MI:0305" type="locus name">STM1044</alias>
                    <alias typeAc="MI:0301" type="gene name">sodC1</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">sodC</alias>
                </names>
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                    <secondaryRef db="ensemblbacteria" id="AAL19978" version="SP_62" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="ensemblbacteria" id="STM1044" version="SP_62" refType="gene"/>
                    <secondaryRef db="ensemblbacteria" id="AAL19978" version="SP_62" refType="transcript"/>
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                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR018152"/>
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                    <secondaryRef db="refseq" dbAc="MI:0481" id="WP_000877926.1"/>
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                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0042597" secondary="periplasmic space" version="SP_62"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
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                </interactorType>
                <organism ncbiTaxId="99287">
                    <names>
                        <shortLabel>salty</shortLabel>
                        <fullName>Salmonella typhimurium</fullName>
                    </names>
                </organism>
                <sequence>MKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIEK</sequence>
            </interactor>
        </interactorList>
        <interactionList>
            <interaction imexId="IM-18504-1" id="1331801">
                <names>
                    <shortLabel>sodc1-sodc1</shortLabel>
                </names>
                <xref>
                    <primaryRef db="mpidb" dbAc="MI:0903" id="MPIDB-INT-2087" refType="identity" refTypeAc="MI:0356"/>
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                <experimentList>
                    <experimentRef>1331798</experimentRef>
                </experimentList>
                <participantList>
                    <participant id="1331802">
                        <names>
                            <shortLabel>not-defined-1058513095</shortLabel>
                        </names>
                        <xref>
                            <primaryRef db="intact" dbAc="MI:0469" id="EBI-6399845" refType="identity" refTypeAc="MI:0356"/>
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                        <interactorRef>1331800</interactorRef>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
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                            </xref>
                        </biologicalRole>
                        <experimentalRoleList>
                            <experimentalRole>
                                <names>
                                    <shortLabel>unspecified role</shortLabel>
                                    <fullName>unspecified role</fullName>
                                </names>
                                <xref>
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                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <featureList>
                            <feature id="1331803">
                                <names>
                                    <shortLabel>P0CW86:p.[Tyr107Glu;Tyr129Glu]</shortLabel>
                                    <fullName>P0CW86-87-109</fullName>
                                </names>
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                                    <primaryRef db="intact" dbAc="MI:0469" id="EBI-6399853" refType="identity" refTypeAc="MI:0356"/>
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                                <featureType>
                                    <names>
                                        <shortLabel>mutation disrupting</shortLabel>
                                        <fullName>mutation disrupting interaction</fullName>
                                        <alias typeAc="MI:1041" type="synonym">mutation disrupting</alias>
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                                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-705401" refType="identity" refTypeAc="MI:0356"/>
                                    </xref>
                                </featureType>
                                <featureRangeList>
                                    <featureRange>
                                        <startStatus>
                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
                                            </names>
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                                        </startStatus>
                                        <begin position="107"/>
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                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
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                                        </endStatus>
                                        <end position="107"/>
                                        <isLink>false</isLink>
                                    </featureRange>
                                    <featureRange>
                                        <startStatus>
                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
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                                            </names>
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                                        </startStatus>
                                        <begin position="129"/>
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                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
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                                        <end position="129"/>
                                        <isLink>false</isLink>
                                    </featureRange>
                                </featureRangeList>
                            </feature>
                        </featureList>
                        <attributeList>
                            <attribute name="comment" nameAc="MI:0612">Stoichiometry: 2.0</attribute>
                        </attributeList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>physical association</shortLabel>
                        <fullName>physical association</fullName>
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                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1813147" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
                <attributeList>
                    <attribute name="figure legend" nameAc="MI:0599">figure 1</attribute>
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            </interaction>
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                    <shortLabel>sodc1-sodc1-1</shortLabel>
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                        <names>
                            <shortLabel>not-defined-1058513095</shortLabel>
                        </names>
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                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
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                                    <shortLabel>unspecified role</shortLabel>
                                    <fullName>unspecified role</fullName>
                                </names>
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                            <feature id="1331806">
                                <names>
                                    <shortLabel>P0CW86:p.[Tyr107Glu;Tyr129Glu]</shortLabel>
                                    <fullName>P0CW86-87-109</fullName>
                                </names>
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                                    <primaryRef db="intact" dbAc="MI:0469" id="EBI-6453079" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                                <featureType>
                                    <names>
                                        <shortLabel>mutation disrupting</shortLabel>
                                        <fullName>mutation disrupting interaction</fullName>
                                        <alias typeAc="MI:1041" type="synonym">mutation disrupting</alias>
                                    </names>
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                                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-705401" refType="identity" refTypeAc="MI:0356"/>
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                                </featureType>
                                <featureRangeList>
                                    <featureRange>
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                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
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                                        <isLink>false</isLink>
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                                    <featureRange>
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                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
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                                            <xref>
                                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0335" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-540564" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                            </xref>
                                        </endStatus>
                                        <end position="129"/>
                                        <isLink>false</isLink>
                                    </featureRange>
                                </featureRangeList>
                            </feature>
                        </featureList>
                        <hostOrganismList>
                            <hostOrganism ncbiTaxId="99287">
                                <names>
                                    <shortLabel>salty</shortLabel>
                                    <fullName>Salmonella typhimurium</fullName>
                                </names>
                            </hostOrganism>
                        </hostOrganismList>
                        <attributeList>
                            <attribute name="comment" nameAc="MI:0612">Stoichiometry: 2.0</attribute>
                        </attributeList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>direct interaction</shortLabel>
                        <fullName>direct interaction</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
                <attributeList>
                    <attribute name="figure legend" nameAc="MI:0599">figure 2</attribute>
                    <attribute name="comment" nameAc="MI:0612">Purified SodCI dier is resistant to proteinase K. Monomeric SodC from E. coli was inactivated.  Protease-sensitive sites that are buried in the dimer become exposed in monomeric SodCI.</attribute>
                </attributeList>
            </interaction>
        </interactionList>
    </entry>
</entrySet>
