IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/ sanderfoot-1999-2 The t-SNARE AtVAM3p resides on the prevacuolar compartment in Arabidopsis root cells. arath-root Arabidopsis thaliana root tissue root In vascular plants, the root is that organ of a plant body that typically lies below the surface of the soil (compare with stem). However, this is not always the case, since a root can also be aerial (that is, growing above the ground) or aerating (that is, growing up above the ground or especially above water). On the other hand, a stem normally occurring below ground is not exceptional either (see rhizome). So, it is better to define root as a part of a plant body that bears no leaves, and therefore also lacks nodes. There are also important internal structural differences between stems and roots. The two major functions of roots are 1) absorption of water and inorganic nutrients and 2) anchoring the plant body to the ground. Roots also function in cytokinin synthesis, which supplies some of shoot needs. They often function in storage of food. density sedimentation cosedimentation through density gradient density sedimentation western blot western blot Immuno blot Immuno blot Sanderfoot AA., Kovaleva V., Zheng H., Raikhel NV. It was not possible to unambigiously identify a tonoplast integral membrane protein H-pyrophosphatase detected by the authors, therefore this protein is not curated in this entry. Microsomes of wild-type (ecotype Columbia) or transgenic Arabidopsis root tissue were used in this study. nraikhel@pilot.msu.edu; Plant Physiol. (0032-0889) 1999 Only protein-protein interactions imex curation syp22_arath Syntaxin-22 SYP22 VAM3 MSD23.9 At5g46860 Protein SHOOT GRAVITROPISM 3 SGR3 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEVDKVPEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA vsr1_arath Vacuolar-sorting receptor 1 Epidermal growth factor receptor-like protein 1 BP80-like protein b Spot 3 protein VSR1 BP80B ELP ELP1 At3g52850 F8J2.20 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MKLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHPDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFTLSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYVTDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTEDLETNECLENNGGCWQDKAANITACRDTFRGRLCECPTVQGVKFVGDGYTHCKASGALHCGINNGGCWRESRGGFTYSACVDDHSKDCKCPLGFKGDGVKNCEDVDECKEKTVCQCPECKCKNTWGSYECSCSNGLLYMREHDTCIGSGKVGTTKLSWSFLWILIIGVGVAGLSGYAVYKYRIRSYMDAEIRGIMAQYMPLESQPPNTSGHHMDI syp21_arath Syntaxin-21 SYP21 PEP12 homolog aPEP12 F5E19_170 At5g16830 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEIPTSYNAPELDTESLRISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSSLTCLLILIFGIVLLIVIIVVLV vam3-elp-pep12p 827312 n/a 827313 unspecified role unspecified role neutral component neutral component n/a 827314 unspecified role unspecified role neutral component neutral component n/a 827315 unspecified role unspecified role neutral component neutral component physical association physical association false false false Figure 4