<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<entrySet level="2" version="5" minorVersion="4" xsi:schemaLocation="http://psi.hupo.org/mi/mif http://psidev.sourceforge.net/mi/rel25/src/MIF254.xsd" xmlns="http://psi.hupo.org/mi/mif" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <entry>
        <source releaseDate="2006-03-06Z">
            <names>
                <shortLabel>IntAct</shortLabel>
                <fullName>European Bioinformatics Institute</fullName>
                <alias typeAc="MI:1041" type="synonym">IntAct</alias>
                <alias typeAc="MI:1041" type="synonym">intact</alias>
            </names>
            <bibref>
                <xref>
                    <primaryRef db="pubmed" dbAc="MI:0446" id="14681455" refType="primary-reference" refTypeAc="MI:0358"/>
                </xref>
            </bibref>
            <xref>
                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0469" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-10" refType="identity" refTypeAc="MI:0356"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="19850723" refType="method reference" refTypeAc="MI:0357"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="14681455" refType="primary-reference" refTypeAc="MI:0358"/>
                <secondaryRef db="pubmed" dbAc="MI:0446" id="22121220" refType="method reference" refTypeAc="MI:0357"/>
            </xref>
            <attributeList>
                <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/</attribute>
                <attribute name="search-url" nameAc="MI:0615">http://www.ebi.ac.uk/intact/query/${ac}</attribute>
                <attribute name="id-validation-regexp" nameAc="MI:0628">EBI-[0-9]+|IA:[0-9]+</attribute>
                <attribute name="definition">INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions.</attribute>
                <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact</attribute>
                <attribute name="postaladdress">European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom</attribute>
                <attribute name="url" nameAc="MI:0614">http://www.ebi.ac.uk/intact/</attribute>
                <attribute name="url">http://www.ebi.ac.uk/</attribute>
            </attributeList>
        </source>
        <experimentList>
            <experimentDescription id="331224">
                <names>
                    <shortLabel>dai-2000-1</shortLabel>
                    <fullName>Redox signaling in chloroplasts: cleavage of disulfides by an iron-sulfur cluster.</fullName>
                </names>
                <bibref>
                    <xref>
                        <primaryRef db="pubmed" dbAc="MI:0446" id="10649999" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </bibref>
                <xref>
                    <primaryRef db="intact" dbAc="MI:0469" id="EBI-863198" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <hostOrganismList>
                    <hostOrganism ncbiTaxId="-1">
                        <names>
                            <shortLabel>in vitro</shortLabel>
                            <fullName>In vitro</fullName>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>x-ray diffraction</shortLabel>
                        <fullName>x-ray crystallography</fullName>
                        <alias typeAc="MI:0303" type="go synonym">X-ray</alias>
                        <alias typeAc="MI:1041" type="synonym">X-ray</alias>
                        <alias typeAc="MI:1041" type="synonym">x-ray diffraction</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0114" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1272" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </interactionDetectionMethod>
                <participantIdentificationMethod>
                    <names>
                        <shortLabel>predetermined</shortLabel>
                        <fullName>predetermined participant</fullName>
                        <alias typeAc="MI:1041" type="synonym">predetermined</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </participantIdentificationMethod>
                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Dai S., Schwendtmayer C., Schurmann P., Ramaswamy S., Eklund H.</attribute>
                    <attribute name="dataset" nameAc="MI:0875">Cyanobacteria - Interaction dataset based on Cyanobacteria proteins and related species</attribute>
                    <attribute name="exp-modification" nameAc="MI:0627">The structure of the oxidized FTR was determined by multiplde isomorphous replacement (MIR) with the help of multiwavelength anomalous dispersion (MAD) data collected on the iron edge for the iron-sulfur center.</attribute>
                    <attribute name="contact-email" nameAc="MI:0634">hasse@xray.bmc.uu.se</attribute>
                    <attribute name="journal" nameAc="MI:0885">Science (0036-8075)</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2000</attribute>
                </attributeList>
            </experimentDescription>
        </experimentList>
        <interactorList>
            <interactor id="331225">
                <names>
                    <shortLabel>ftrc_syny3</shortLabel>
                    <fullName>Ferredoxin-thioredoxin reductase, catalytic chain</fullName>
                    <alias typeAc="MI:0301" type="gene name">ftrC</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">Ferredoxin-thioredoxin reductase subunit B</alias>
                    <alias typeAc="MI:0306" type="orf name">sll0554</alias>
                </names>
                <xref>
                    <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q55389" version="TrEMBL_32" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10479" version="SP_127" refType="gene"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10479" version="SP_127" refType="transcript"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0015979" secondary="photosynthesis" version="SP_127"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0103012" secondary="ferredoxin-thioredoxin reductase activity" version="SP_127"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004209" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PUO" version="SP_127"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0046872" secondary="metal ion binding" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVD" version="SP_127"/>
                    <secondaryRef db="dip" dbAc="MI:0465" id="DIP-35307N"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1608683" refType="intact-secondary"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR024707" version="SP_127"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0051539" secondary="4 iron, 4 sulfur cluster binding" version="SP_127"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR036644" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVO" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PU9" version="SP_127"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10479" version="SP_127" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVG" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PUK" version="SP_127"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-863211" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0016730" secondary="oxidoreductase activity, acting on iron-sulfur proteins as donors" version="SP_127"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1DJ7" version="SP_127"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0009055" secondary="electron transfer activity" version="SP_127"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactorType>
                <organism ncbiTaxId="1111708">
                    <names>
                        <shortLabel>syny3</shortLabel>
                        <fullName>Synechocystis sp. (strain PCC 6803 / Kazusa)</fullName>
                    </names>
                </organism>
                <sequence>MTSSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDIPMETLEEVKASMA</sequence>
            </interactor>
            <interactor id="331226">
                <names>
                    <shortLabel>ftrv_syny3</shortLabel>
                    <fullName>Ferredoxin-thioredoxin reductase, variable chain</fullName>
                    <alias typeAc="MI:0301" type="gene name">ftrV</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">Ferredoxin-thioredoxin reductase subunit A</alias>
                    <alias typeAc="MI:0305" type="locus name">ssr0330</alias>
                </names>
                <xref>
                    <primaryRef db="uniprotkb" dbAc="MI:0486" id="Q55781" version="SP_41" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR008990" version="SP_124"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-863219" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PU9" version="SP_124"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0016491" secondary="oxidoreductase activity" version="SP_124"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PUO" version="SP_124"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVO" version="SP_124"/>
                    <secondaryRef db="dip" dbAc="MI:0465" id="DIP-35306N"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10432" version="SP_124" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0015979" secondary="photosynthesis" version="SP_124"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10432" version="SP_124" refType="gene"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVG" version="SP_124"/>
                    <secondaryRef db="ensemblbacteria" id="BAA10432" version="SP_124" refType="transcript"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PUK" version="SP_124"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR044166" version="SP_124"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="2PVD" version="SP_124"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="1DJ7" version="SP_124"/>
                    <secondaryRef db="mint" dbAc="MI:0471" id="Q55781"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR004207" version="SP_124"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactorType>
                <organism ncbiTaxId="1111708">
                    <names>
                        <shortLabel>syny3</shortLabel>
                        <fullName>Synechocystis sp. (strain PCC 6803 / Kazusa)</fullName>
                    </names>
                </organism>
                <sequence>MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKFEQRFKAHFRPDEVTLIED</sequence>
            </interactor>
        </interactorList>
        <interactionList>
            <interaction id="331227">
                <names>
                    <shortLabel>ftrv-ftrc-1</shortLabel>
                    <fullName>Crystal structure of oxidized FTR heterodimer</fullName>
                </names>
                <xref>
                    <primaryRef db="rcsb pdb" dbAc="MI:0460" id="1dj7" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-863225" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <experimentList>
                    <experimentRef>331224</experimentRef>
                </experimentList>
                <participantList>
                    <participant id="331228">
                        <names>
                            <shortLabel>N/A</shortLabel>
                        </names>
                        <xref>
                            <primaryRef db="intact" dbAc="MI:0469" id="EBI-863226" refType="identity" refTypeAc="MI:0356"/>
                        </xref>
                        <interactorRef>331225</interactorRef>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                            </xref>
                        </biologicalRole>
                        <experimentalRoleList>
                            <experimentalRole>
                                <names>
                                    <shortLabel>neutral component</shortLabel>
                                    <fullName>neutral component</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0497" refType="identity" refTypeAc="MI:0356"/>
                                    <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-55" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <featureList>
                            <feature id="331229">
                                <names>
                                    <shortLabel>sulfide bond</shortLabel>
                                    <fullName>sulfide bond</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="intact" dbAc="MI:0469" id="EBI-863370" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                                <featureType>
                                    <names>
                                        <shortLabel>binding region</shortLabel>
                                        <fullName>binding-associated region</fullName>
                                        <alias typeAc="MI:1041" type="synonym">binding region</alias>
                                    </names>
                                    <xref>
                                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0117" refType="identity" refTypeAc="MI:0356"/>
                                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-456493" refType="identity" refTypeAc="MI:0356"/>
                                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                    </xref>
                                </featureType>
                                <featureRangeList>
                                    <featureRange>
                                        <startStatus>
                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
                                            </names>
                                            <xref>
                                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0335" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-540564" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                            </xref>
                                        </startStatus>
                                        <begin position="58"/>
                                        <endStatus>
                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
                                            </names>
                                            <xref>
                                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0335" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-540564" refType="identity" refTypeAc="MI:0356"/>
                                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                            </xref>
                                        </endStatus>
                                        <end position="88"/>
                                        <isLink>false</isLink>
                                    </featureRange>
                                </featureRangeList>
                            </feature>
                        </featureList>
                        <hostOrganismList>
                            <hostOrganism ncbiTaxId="83333">
                                <names>
                                    <shortLabel>ecoli</shortLabel>
                                    <fullName>Escherichia coli (strain K12)</fullName>
                                </names>
                            </hostOrganism>
                        </hostOrganismList>
                    </participant>
                    <participant id="331230">
                        <names>
                            <shortLabel>N/A</shortLabel>
                        </names>
                        <xref>
                            <primaryRef db="intact" dbAc="MI:0469" id="EBI-863227" refType="identity" refTypeAc="MI:0356"/>
                        </xref>
                        <interactorRef>331226</interactorRef>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0499" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="intact" dbAc="MI:0469" id="EBI-77781" refType="identity" refTypeAc="MI:0356"/>
                                <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                            </xref>
                        </biologicalRole>
                        <experimentalRoleList>
                            <experimentalRole>
                                <names>
                                    <shortLabel>neutral component</shortLabel>
                                    <fullName>neutral component</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0497" refType="identity" refTypeAc="MI:0356"/>
                                    <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-55" refType="identity" refTypeAc="MI:0356"/>
                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <hostOrganismList>
                            <hostOrganism ncbiTaxId="83333">
                                <names>
                                    <shortLabel>ecoli</shortLabel>
                                    <fullName>Escherichia coli (strain K12)</fullName>
                                </names>
                            </hostOrganism>
                        </hostOrganismList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>direct interaction</shortLabel>
                        <fullName>direct interaction</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0407" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-608833" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
                <attributeList>
                    <attribute name="3d-resolution" nameAc="MI:0632">1.60A</attribute>
                    <attribute name="3d-r-factors" nameAc="MI:0631">working 23.8%, free 27.8%</attribute>
                    <attribute name="comment" nameAc="MI:0612">FTR is an iron-sulfur enzume composed a conserved catalytic subunit and a varaiable subunit. The catalytic subunit contains a redox-active disulfide and a [4fe-4S] center. The interaction between the catalytic and variable chains involves the very thin center of the molecule where only a small hydrophobic core is formed. However, most of the interactions occur between charged and polar residues that form hydrogen bonds. One inmportant function of the variable subunit seems the stablization of the Fe-S cluster of the catalytic subunit.</attribute>
                    <attribute name="comment" nameAc="MI:0612">Reduced ferredoxin produced by photosytem I during light  is used by this heterodimer enzyme ferredoxin:thioredoxin reductase (FTR) to reduce the sulfide bond of thioredoxins which will the regulates many target enzymes. FTR is key enzyme sensing light-dependent redox potential changes transforming the electron signal to a thiol signal.</attribute>
                    <attribute name="comment" nameAc="MI:0612">The active-site disulfide bridge between Cys57 and Cys87 of catalytic subunit is in van der Waals contact with the iron center. This bridge is believed to be disrupted when ferrodoxin gives 1 electron. The Cys57 forms then a disulfid bond with thioredoxin by disrupting an internal disulfide bond in thioredoxin. A second electron given by a new ferrodoxin free the thioredoxin which is then reduced and the cys57 forms again an internal sulfid bond cys 87.</attribute>
                </attributeList>
            </interaction>
        </interactionList>
    </entry>
</entrySet>
