HPIDb Host Pathogen Interaction database http://www.agbase.msstate.edu/hpi/main.html http://www.agbase.msstate.edu/hpi/main.html li-2015-7 yeast Saccharomyces cerevisiae Baker's yeast ub reconstruction ubiquitin reconstruction ub reconstruction nucleotide sequence nucleotide sequence identification sequence cloning sequence cloning nucleotide sequence Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins An interaction between SH and P450 cytochrome oxido-reductase was observed but could not be mapped to a single gene product. jtorres@ntu.edu.sg Human adult lung Virology 2015 imex curation Only protein-protein interactions imex curation li-2015-8 mouse-c2c12 Mouse C3H muscle myoblast c2c12 Mouse C3H muscle myoblast fluorescence imaging fluorescence microscopy fluorescence imaging tag visualisation tag visualisation Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins jtorres@ntu.edu.sg Virology 2015 imex curation Only protein-protein interactions imex curation li-2015-9 human-a_549 Homo sapiens Caucasian lung carcinoma cell line a_549 Human Caucasian lung carcinoma fluorescence imaging fluorescence microscopy fluorescence imaging tag visualisation tag visualisation Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins jtorres@ntu.edu.sg Virology 2015 imex curation Only protein-protein interactions imex curation li-2015-10 human-293t Homo sapiens 293 cells transformed with SV40 large T antigen 293t 293 cells expressing SV40 large T antigen. The original designation of this cell line was 293tsA1609neo. It is not in Cabri,ATCC or HyperCLDB. pull down pull down anti tag western anti tag western blot anti tag western Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins jtorres@ntu.edu.sg Virology 2015 imex curation Only protein-protein interactions imex curation li-2015-11 human-293t Homo sapiens 293 cells transformed with SV40 large T antigen 293t 293 cells expressing SV40 large T antigen. The original designation of this cell line was 293tsA1609neo. It is not in Cabri,ATCC or HyperCLDB. anti bait coip anti bait coimmunoprecipitation anti bait coip anti tag western anti tag western blot anti tag western Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins jtorres@ntu.edu.sg Virology 2015 imex curation Only protein-protein interactions imex curation li-2015-12 in vitro In vitro nmr nuclear magnetic resonance NMR NMR nmr predetermined predetermined participant predetermined Li Y., Jain N., Limpanawat S., To J., Quistgaard EM., Nordlund P., Thanabalu T., Torres J. Virus - Publications including interactions involving viral proteins jtorres@ntu.edu.sg Virology 2015 imex curation Only protein-protein interactions imex curation q77yb1_hrsva Small hydrophobic protein SH (1A) Small protein 1A protein protein hrsva human respiratory sy MENTSITIEFSSKFWPYFTLIHMITTIISLLIIISIMIAILNKLCEYNVFHNKTFELPRARVNT rl3_human 60S ribosomal protein L3 RPL3 HIV-1 TAR RNA-binding protein B Large ribosomal subunit protein uL3 OK/SW-cl.32 protein protein human Homo sapiens Human MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA rl7_human 60S ribosomal protein L7 RPL7 Large ribosomal subunit protein uL30 protein protein human Homo sapiens Human MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN rs13_human 40S ribosomal protein S13 RPS13 Small ribosomal subunit protein uS15 protein protein human Homo sapiens Human MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA taldo_human Transaldolase TALDO1 TAL TALDO TALDOR protein protein human Homo sapiens Human MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNEDQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK bap31_human B-cell receptor-associated protein 31 BCAP31 BAP31 p28 6C6-AG tumor-associated antigen DXS1357E Protein CDM protein protein human Homo sapiens Human MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE sh-l3-1 1882849 N/A 1882855 unspecified role unspecified role bait bait cub cub cub n-term range n-terminal range n-term range n-term range n-terminal range n-term range false region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882856 unspecified role unspecified role prey prey nubg nubg nubg undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false physical association physical association false false false results sh_hrsv-rpl7-1 1882849 N/A 1882855 unspecified role unspecified role bait bait cub cub cub n-term range n-terminal range n-term range n-term range n-terminal range n-term range false region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882857 unspecified role unspecified role prey prey nubg nubg nubg undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false physical association physical association false false false results sh_hrsv-rps13-1 1882849 N/A 1882855 unspecified role unspecified role bait bait cub cub cub n-term range n-terminal range n-term range n-term range n-terminal range n-term range false region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882858 unspecified role unspecified role prey prey nubg nubg nubg undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false physical association physical association false false false results sh_hrsv-taldo1-1 1882849 N/A 1882855 unspecified role unspecified role bait bait cub cub cub n-term range n-terminal range n-term range n-term range n-terminal range n-term range false region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882859 unspecified role unspecified role prey prey nubg nubg nubg undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false physical association physical association false false false results sh_hrsv-bcap31-1 1882849 N/A 1882855 unspecified role unspecified role bait bait cub cub cub n-term range n-terminal range n-term range n-term range n-terminal range n-term range false region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882860 unspecified role unspecified role prey prey nubg nubg nubg undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false physical association physical association false false false results sh-bap31-1 1882850 N/A 1882860 unspecified role unspecified role neutral component neutral component c terminus rfp tag red fluorescent protein tag red fluorescent protein RFP red fluorescent protein RFP rfp tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false N/A 1882855 unspecified role unspecified role neutral component neutral component n terminus egfp tag enhanced green fluorescent protein tag enhanced green fluorescent protein EGFP enhanced green fluorescent protein EGFP egfp tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false colocalization colocalization false false false 1A bcap31-sh_hrsv-1 1882851 N/A 1882860 unspecified role unspecified role neutral component neutral component c terminus rfp tag red fluorescent protein tag red fluorescent protein RFP red fluorescent protein RFP rfp tag c-term range C-terminal range c-term range c-term range C-terminal range c-term range false N/A 1882855 unspecified role unspecified role neutral component neutral component n terminus egfp tag enhanced green fluorescent protein tag enhanced green fluorescent protein EGFP enhanced green fluorescent protein EGFP egfp tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false colocalization colocalization false false false 1B bcap31-sh_hrsv-2 1882852 N/A 1882860 unspecified role unspecified role bait bait his tag his tag his tag Hexa-His-tag 6-His-tag Histidine-tag Hexa-His-tag Histidine-tag 6-His-tag undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false N/A 1882855 unspecified role unspecified role prey prey n terminus egfp tag enhanced green fluorescent protein tag enhanced green fluorescent protein EGFP enhanced green fluorescent protein EGFP egfp tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false physical association physical association false false false 2A bcap31-sh_hrsv-3 1882853 N/A 1882860 unspecified role unspecified role bait bait N/A 1882855 unspecified role unspecified role prey prey n terminus egfp tag enhanced green fluorescent protein tag enhanced green fluorescent protein EGFP enhanced green fluorescent protein EGFP egfp tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false physical association physical association false false false 2B bcap31-sh_hrsv-4 1882854 N/A 1882860 unspecified role unspecified role neutral component neutral component region binding region binding-associated region binding region certain certain sequence position certain certain certain sequence position certain false N/A 1882855 unspecified role unspecified role neutral component neutral component purified purified 15n label 15n label 15n label 15N N15 15N N15 undetermined undetermined sequence position undetermined undetermined undetermined sequence position undetermined false direct interaction direct interaction false false false 3