GO Monthly Release Notes for December 2004
========================
Generated on Mon Jan 24 12:50:53 2005
Files used:
gene_ontology.obo
OLD: version 3.634, 30:11:2004 17:59
NEW: version 3.688, 23:12:2004 14:08
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
Ontology name changes:
Note that the three ontologies changed their names:
process --> biological_process
component --> cellular_component
function --> molecular_function
New terms in biological_process ontology (103 new terms)
GO:0001932 GO:0006464 MGI D 1035336 regulation of protein amino acid phosphorylation
GO:0001933 GO:0006464 MGI D 1035336 negative regulation of protein amino acid phosphorylation
GO:0001934 GO:0006464 MGI D 1035336 positive regulation of protein amino acid phosphorylation
GO:0001935 GO:0008283 MGI D 1035336 endothelial cell proliferation
GO:0001936 GO:0008283 MGI D 1035336 regulation of endothelial cell proliferation
GO:0001937 GO:0008283 MGI D 1035336 negative regulation of endothelial cell proliferation
GO:0001938 GO:0008283 MGI D 1035336 positive regulation of endothelial cell proliferation
GO:0031075 GO:0009653 MAH D 948605 eye morphogenesis (sensu Actinopterygii)
GO:0031076 GO:0009653 MAH D 948605 embryonic eye morphogenesis (sensu Actinopterygii)
GO:0009790
GO:0031077 GO:0009653 MAH D 948605 post-embryonic eye morphogenesis (sensu Actinopterygii)
GO:0031081 GO:0016043 MAH D 1081397 nuclear pore distribution
GO:0031086 GO:0006139 MAH D 1080977 mRNA catabolism, deadenylylation-independent decay
GO:0009056
GO:0031087 GO:0006139 MAH D 1080977 deadenylylation-independent decapping
GO:0009056
GO:0035282 GO:0007275 FB D 1070915 segmentation
GO:0035283 GO:0009653 FB D 1072672 central nervous system segmentation
GO:0035284 GO:0009653 FB D 1072672 brain segmentation
GO:0035285 GO:0009653 FB D 1072672 appendage segmentation
GO:0035286 GO:0009653 FB D 1072672 leg segmentation
GO:0035287 GO:0009790 FB D 1072672 head segmentation
GO:0035288 GO:0009790 FB D 1072672 anterior head segmentation
GO:0035289 GO:0009790 FB D 1072672 posterior head segmentation
GO:0035290 GO:0009790 FB D 1072672 trunk segmentation
GO:0035291 GO:0009790 FB D 1072672 specification of segmental identity, intercalary segment
GO:0035292 GO:0009790 FB D 1072672 specification of segmental identity, trunk
GO:0035293 GO:0007275 FB D 1035336 larval cuticle pattern formation (sensu Insecta)
GO:0009058
GO:0035294 GO:0009653 FB D 1035336 determination of wing disc primordium
GO:0035295 GO:0007275 FB D 939379 tube development
GO:0035296 GO:0009653 FB D 939379 regulation of tube diameter
GO:0035297 GO:0009653 FB D 939379 regulation of Malpighian tubule diameter
GO:0009790
GO:0035298 GO:0009653 FB D 939379 regulation of Malpighian tubule size
GO:0009790
GO:0035303 GO:0008152 FB D 1085188 regulation of dephosphorylation
GO:0035304 GO:0006464 FB D 1085188 regulation of protein amino acid dephosphorylation
GO:0035305 GO:0008152 FB D 1085188 negative regulation of dephosphorylation
GO:0035306 GO:0008152 FB D 1085188 positive regulation of dephosphorylation
GO:0035307 GO:0006464 FB D 1085188 positive regulation of protein amino acid dephosphorylation
GO:0035308 GO:0006464 FB D 1085188 negative regulation of protein amino acid dephosphorylation
GO:0035309 GO:0009653 FB D 1035336 wing and notum subfield formation
GO:0035310 GO:0009653 FB D 1035336 notum cell fate specification
GO:0030154
GO:0035311 GO:0009653 FB D 1035336 wing cell fate specification
GO:0030154
GO:0043266 GO:0006811 JL D 1035336 regulation of potassium ion transport
GO:0043267 GO:0006811 JL D 1035336 negative regulation of potassium ion transport
GO:0043268 GO:0006811 JL D 1035336 positive regulation of potassium ion transport
GO:0043269 GO:0006811 JL D 1035336 regulation of ion transport
GO:0043270 GO:0006811 JL D 1035336 positive regulation of ion transport
GO:0043271 GO:0006811 JL D 1035336 negative regulation of ion transport
GO:0043272 GO:0006519 JL D 1035336 ethylene biosynthesis during jasmonic acid and ethylene-dependent systemic resistance
GO:0006950
GO:0009058
GO:0009605
GO:0009607
GO:0043276 GO:0008219 JL D 1035336 anoikis
GO:0043277 GO:0006810 JL D 1035336 apoptotic cell clearance
GO:0008219
GO:0043278 GO:0009628 JL D 1035336 response to morphine
GO:0043279 GO:0009628 JL D 1035336 response to alkaloid
GO:0043280 GO:0008150 JL D 1035336 positive regulation of caspase activity
GO:0043281 GO:0008150 JL D 1035336 regulation of caspase activity
GO:0043282 GO:0009653 JL D 1035336 pharyngeal muscle development
GO:0043283 GO:0008152 JL D 1035336 biopolymer metabolism
GO:0043284 GO:0009058 JL D 1035336 biopolymer biosynthesis
GO:0043285 GO:0009056 JL D 1035336 biopolymer catabolism
GO:0043286 GO:0009058 JL D 1080270 regulation of poly(3-hydroxyalkanoate) biosynthesis
GO:0043288 GO:0006629 JL D 1035336 apocarotenoid metabolism
GO:0019748
GO:0043289 GO:0006629 JL D 1035336 apocarotenoid biosynthesis
GO:0019748
GO:0043290 GO:0006629 JL D 1035336 apocarotenoid catabolism
GO:0019748
GO:0044236 GO:0008152 JL D 1035336 organismal metabolism
GO:0044237 GO:0008152 JL D 1035336 cellular metabolism
GO:0044238 GO:0008152 JL D 1035336 primary metabolism
GO:0044239 GO:0005975 JL D 1035336 salivary polysaccharide catabolism
GO:0009056
GO:0044240 GO:0006629 JL D 1035336 organismal lipid catabolism
GO:0009056
GO:0044241 GO:0007582 JL D 1035336 lipid digestion
GO:0044242 GO:0006629 JL D 1035336 cellular lipid catabolism
GO:0009056
GO:0044243 GO:0008152 JL D 1035336 organismal catabolism
GO:0044244 GO:0005975 JL D 1035336 organismal polysaccharide catabolism
GO:0009056
GO:0044245 GO:0007582 JL D 1035336 polysaccharide digestion
GO:0044246 GO:0008152 JL D 1035336 regulation of organismal metabolism
GO:0044247 GO:0005975 JL D 1035336 cellular polysaccharide catabolism
GO:0009056
GO:0044248 GO:0009056 JL D 1035336 cellular catabolism
GO:0044249 GO:0009058 JL D 1035336 cellular biosynthesis
GO:0044250 GO:0008152 JL D 1035336 negative regulation of metabolic activity during hibernation
GO:0044251 GO:0009056 JL D 1035336 protein catabolism by pepsin
GO:0019538
GO:0044252 GO:0008152 JL D 1035336 negative regulation of organismal metabolism
GO:0044253 GO:0008152 JL D 1035336 positive regulation of organismal metabolism
GO:0044254 GO:0009056 JL D 1035336 organismal protein catabolism
GO:0019538
GO:0044255 GO:0006629 JL D 1035336 cellular lipid metabolism
GO:0044256 GO:0007582 JL D 1035336 protein digestion
GO:0044257 GO:0009056 JL D 1035336 cellular protein catabolism
GO:0019538
GO:0044258 GO:0006629 JL D 1035336 intestinal lipid catabolism
GO:0009056
GO:0044259 GO:0008152 JL D 1035336 organismal macromolecule metabolism
GO:0044260 GO:0008152 JL D 1035336 cellular macromolecule metabolism
GO:0044261 GO:0005975 JL D 1035336 organismal carbohydrate metabolism
GO:0044262 GO:0005975 JL D 1035336 cellular carbohydrate metabolism
GO:0044263 GO:0005975 JL D 1035336 organismal polysaccharide metabolism
GO:0044264 GO:0005975 JL D 1035336 cellular polysaccharide metabolism
GO:0044265 GO:0009056 JL D 1035336 cellular macromolecule catabolism
GO:0044266 GO:0009056 JL D 1035336 organismal macromolecule catabolism
GO:0044267 GO:0019538 JL D 1035336 cellular protein metabolism
GO:0044268 GO:0019538 JL D 1035336 organismal protein metabolism
GO:0044269 GO:0009056 JL D 1035336 glycerol ether catabolism
GO:0044270 GO:0009056 JL D 1035336 nitrogen compound catabolism
GO:0044271 GO:0009058 JL D 1035336 nitrogen compound biosynthesis
GO:0044272 GO:0009058 JL D 1035336 sulfur compound biosynthesis
GO:0044273 GO:0009056 JL D 1035336 sulfur compound catabolism
GO:0044274 GO:0009058 JL D 1035336 organismal biosynthesis
GO:0044275 GO:0005975 JL D 1035336 cellular carbohydrate catabolism
GO:0009056
GO:0044276 GO:0005975 JL D 1035336 organismal carbohydrate catabolism
GO:0009056
GO:0051276 GO:0006996 AI D 1071986 chromosome organization and biogenesis
GO:0051277 GO:0006996 AI D 1071986 chromosome organization and biogenesis (sensu Bacteria)
Term name changes in biological_process ontology
GO:0001744: optic placode formation (sensu Drosophila) --> optic placode formation (sensu Endopterygota)
GO:0001745: compound eye morphogenesis (sensu Drosophila) --> compound eye morphogenesis (sensu Endopterygota)
GO:0001748: optic placode development (sensu Drosophila) --> optic placode development (sensu Endopterygota)
GO:0001749: non-eye photoreceptor development (sensu Drosophila) --> non-eye photoreceptor development (sensu Endopterygota)
GO:0001751: eye photoreceptor differentiation (sensu Drosophila) --> eye photoreceptor differentiation (sensu Endopterygota)
GO:0001752: eye photoreceptor fate commitment (sensu Drosophila) --> eye photoreceptor fate commitment (sensu Endopterygota)
GO:0001929: negative regulation of exocyst assembly. --> negative regulation of exocyst assembly
GO:0001930: positive regulation of exocyst assembly. --> positive regulation of exocyst assembly
GO:0006091: energy pathways --> generation of precursor metabolites and energy
GO:0006807: nitrogen metabolism --> nitrogen compound metabolism
GO:0007224: smoothened receptor signaling pathway --> smoothened signaling pathway
GO:0007225: patched receptor ligand processing --> patched ligand processing
GO:0007456: eye morphogenesis (sensu Drosophila) --> eye morphogenesis (sensu Endopterygota)
GO:0007458: progression of morphogenetic furrow (sensu Drosophila) --> progression of morphogenetic furrow (sensu Endopterygota)
GO:0007459: photoreceptor fate commitment (sensu Drosophila) --> photoreceptor fate commitment (sensu Endopterygota)
GO:0007466: cone cell fate commitment (sensu Drosophila) --> cone cell fate commitment (sensu Endopterygota)
GO:0007467: photoreceptor differentiation (sensu Drosophila) --> photoreceptor differentiation (sensu Endopterygota)
GO:0008057: eye pigment granule morphogenesis (sensu Drosophila) --> eye pigment granule morphogenesis (sensu Endopterygota)
GO:0008583: mystery cell fate differentiation (sensu Drosophila) --> mystery cell fate differentiation (sensu Endopterygota)
GO:0008589: regulation of smoothened receptor signaling pathway --> regulation of smoothened signaling pathway
GO:0008594: photoreceptor cell morphogenesis (sensu Drosophila) --> photoreceptor cell morphogenesis (sensu Endopterygota)
GO:0010000: negative regulation of cone cell fate specification (sensu Drosophila) --> negative regulation of cone cell fate specification (sensu Endopterygota)
GO:0016330: second mitotic wave (sensu Drosophila) --> second mitotic wave (sensu Endopterygota)
GO:0016560: peroxisome receptor docking --> peroxisome matrix protein import, docking
GO:0016561: peroxisome receptor translocation --> peroxisome matrix protein import, translocation
GO:0016562: peroxisome receptor recycling --> peroxisome matrix protein import, receptor recycling
GO:0042051: eye photoreceptor development (sensu Drosophila) --> eye photoreceptor development (sensu Endopterygota)
GO:0042067: establishment of ommatidial polarity (sensu Drosophila) --> establishment of ommatidial polarity (sensu Endopterygota)
GO:0042674: cone cell differentiation (sensu Drosophila) --> cone cell differentiation (sensu Endopterygota)
GO:0042677: cone cell fate determination (sensu Drosophila) --> cone cell fate determination (sensu Endopterygota)
GO:0042678: cone cell fate specification (sensu Drosophila) --> cone cell fate specification (sensu Endopterygota)
GO:0042681: regulation of cone cell fate specification (sensu Drosophila) --> regulation of cone cell fate specification (sensu Endopterygota)
GO:0043109: regulation of smoothened receptor activity --> regulation of smoothened activity
GO:0045162: clustering of voltage gated sodium channels --> clustering of voltage-gated sodium channels
GO:0045163: clustering of voltage gated potassium channels --> clustering of voltage-gated potassium channels
GO:0045314: regulation of eye photoreceptor development (sensu Drosophila) --> regulation of eye photoreceptor development (sensu Endopterygota)
GO:0045315: positive regulation of eye photoreceptor development (sensu Drosophila) --> positive regulation of eye photoreceptor development (sensu Endopterygota)
GO:0045316: negative regulation of eye photoreceptor development (sensu Drosophila) --> negative regulation of eye photoreceptor development (sensu Endopterygota)
GO:0045673: regulation of photoreceptor differentiation (sensu Drosophila) --> regulation of photoreceptor differentiation (sensu Endopterygota)
GO:0045674: negative regulation of photoreceptor differentiation (sensu Drosophila) --> negative regulation of photoreceptor differentiation (sensu Endopterygota)
GO:0045675: positive regulation of photoreceptor differentiation (sensu Drosophila) --> positive regulation of photoreceptor differentiation (sensu Endopterygota)
GO:0045877: negative regulation of smoothened receptor activity by patched --> negative regulation of smoothened activity
GO:0045878: positive regulation of smoothened receptor activity by patched --> positive regulation of smoothened activity
GO:0045879: negative regulation of smoothened receptor signaling pathway --> negative regulation of smoothened signaling pathway
GO:0045880: positive regulation of smoothened receptor signaling pathway --> positive regulation of smoothened signaling pathway
GO:0046667: retinal programmed cell death (sensu Drosophila) --> retinal programmed cell death (sensu Endopterygota)
GO:0046669: regulation of retinal programmed cell death (sensu Drosophila) --> regulation of retinal programmed cell death (sensu Endopterygota)
GO:0046672: positive regulation of retinal programmed cell death (sensu Drosophila) --> positive regulation of retinal programmed cell death (sensu Endopterygota)
GO:0046673: negative regulation of retinal programmed cell death (sensu Drosophila) --> negative regulation of retinal programmed cell death (sensu Endopterygota)
GO:0046675: induction of retinal programmed cell death (sensu Drosophila) --> induction of retinal programmed cell death (sensu Endopterygota)
GO:0046685: response to arsenate --> response to arsenic
GO:0048049: embryonic eye morphogenesis (sensu Drosophila) --> embryonic eye morphogenesis (sensu Endopterygota)
GO:0048051: post-embryonic eye morphogenesis (sensu Drosophila) --> post-embryonic eye morphogenesis (sensu Endopterygota)
GO:0048052: R1/R6 differentiation (sensu Drosophila) --> R1/R6 differentiation (sensu Endopterygota)
GO:0048053: R1/R6 development (sensu Drosophila) --> R1/R6 development (sensu Endopterygota)
GO:0048054: R2/R5 differentiation (sensu Drosophila) --> R2/R5 differentiation (sensu Endopterygota)
GO:0048055: R2/R5 development (sensu Drosophila) --> R2/R5 development (sensu Endopterygota)
GO:0048056: R3/R4 differentiation (sensu Drosophila) --> R3/R4 differentiation (sensu Endopterygota)
GO:0048057: R3/R4 development (sensu Drosophila) --> R3/R4 development (sensu Endopterygota)
GO:0048058: corneal lens formation (sensu Drosophila) --> corneal lens formation (sensu Endopterygota)
GO:0048072: eye pigmentation (sensu Drosophila) --> eye pigmentation (sensu Endopterygota)
GO:0048076: regulation of eye pigmentation (sensu Drosophila) --> regulation of eye pigmentation (sensu Endopterygota)
GO:0048077: negative regulation of eye pigmentation (sensu Drosophila) --> negative regulation of eye pigmentation (sensu Endopterygota)
GO:0048078: positive regulation of eye pigmentation (sensu Drosophila) --> positive regulation of eye pigmentation (sensu Endopterygota)
New definitions for biological_process ontology terms (22 new definitions)
GO:0006091, generation of precursor metabolites and energy
GO:0006924, programmed cell death, activated T-cells
GO:0006925, programmed cell death, inflammatory cells
GO:0006926, programmed cell death, virus-infected cells
GO:0006927, programmed cell death, transformed cells
GO:0007225, patched ligand processing
GO:0007227, signal transduction downstream of smoothened
GO:0007228, activation of hh target transcription factor
GO:0008334, histone mRNA metabolism
GO:0009265, 2'-deoxyribonucleotide biosynthesis
GO:0009394, 2'-deoxyribonucleotide metabolism
GO:0009760, C4 photosynthesis
GO:0009761, CAM photosynthesis
GO:0016559, peroxisome division
GO:0016560, peroxisome matrix protein import, docking
GO:0016561, peroxisome matrix protein import, translocation
GO:0016562, peroxisome matrix protein import, receptor recycling
GO:0019684, photosynthesis, light reaction
GO:0019685, photosynthesis, dark reaction
GO:0042434, indole derivative metabolism
GO:0042435, indole derivative biosynthesis
GO:0042436, indole derivative catabolism
New term merges in biological_process ontology
GO:0007226 has been merged into GO:0043109, regulation of smoothened activity
GO:0008151 has been merged into GO:0050875, cellular physiological process
GO:0042456 has been merged into GO:0009693, ethylene biosynthesis
Term movements in biological_process ontology:
Terms movements under GO Slim term 'generation of precursor metabolites and energy ; GO:0006091'
+ GO:0006118, electron transport
+ GO:0006119, oxidative phosphorylation
- GO:0009767, photosynthetic electron transport
- GO:0009772, photosynthetic electron transport in photosystem II
- GO:0009773, photosynthetic electron transport in photosystem I
- GO:0009774, photosynthetic electron transport in plastoquinone
- GO:0009775, photosynthetic electron transport in cytochrome b6/f
- GO:0009776, photosynthetic electron transport in plastocyanin
- GO:0010205, photoinhibition
+ GO:0015986, ATP synthesis coupled proton transport
+ GO:0042776, ATP synthesis coupled proton transport (sensu Eukaryota)
+ GO:0042777, ATP synthesis coupled proton transport (sensu Bacteria)
Terms movements under GO Slim term 'protein modification ; GO:0006464'
+ GO:0007225, patched ligand processing
Terms movements under GO Slim term 'lipid metabolism ; GO:0006629'
- GO:0006071, glycerol metabolism
- GO:0006072, glycerol-3-phosphate metabolism
- GO:0006114, glycerol biosynthesis
- GO:0019563, glycerol catabolism
- GO:0019564, aerobic glycerol catabolism
- GO:0019565, aerobic glycerol fermentation
- GO:0019588, glycerol fermentation
- GO:0019589, glycerol fermentation to propane-1,3-diol
+ GO:0042574, retinal metabolism
- GO:0046167, glycerol-3-phosphate biosynthesis
- GO:0046168, glycerol-3-phosphate catabolism
Terms movements under GO Slim term 'response to stress ; GO:0006950'
- GO:0009693, ethylene biosynthesis
- GO:0042218, 1-aminocyclopropane-1-carboxylate biosynthesis
Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996'
+ GO:0000183, chromatin silencing at ribosomal DNA
+ GO:0000722, telomerase-independent telomere maintenance
+ GO:0000723, telomere maintenance
+ GO:0001308, loss of chromatin silencing during replicative cell aging
+ GO:0001672, regulation of chromatin assembly or disassembly
+ GO:0006324, S-phase regulated histone modification
+ GO:0006325, establishment and/or maintenance of chromatin architecture
+ GO:0006333, chromatin assembly or disassembly
+ GO:0006334, nucleosome assembly
+ GO:0006335, DNA replication-dependent nucleosome assembly
+ GO:0006336, DNA replication-independent nucleosome assembly
+ GO:0006337, nucleosome disassembly
+ GO:0006338, chromatin remodeling
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006348, chromatin silencing at telomere
+ GO:0006625, protein-peroxisome targeting
+ GO:0007000, nucleolus organization and biogenesis
+ GO:0007001, chromosome organization and biogenesis (sensu Eukaryota)
+ GO:0007004, telomerase-dependent telomere maintenance
+ GO:0016233, telomere capping
+ GO:0016558, peroxisome matrix protein import
+ GO:0016568, chromatin modification
+ GO:0016569, covalent chromatin modification
+ GO:0016570, histone modification
+ GO:0016571, histone methylation
+ GO:0016572, histone phosphorylation
+ GO:0016573, histone acetylation
+ GO:0016574, histone ubiquitination
+ GO:0016575, histone deacetylation
+ GO:0016576, histone dephosphorylation
+ GO:0016577, histone demethylation
+ GO:0016578, histone deubiquitination
+ GO:0016582, non-covalent chromatin modification
+ GO:0016584, nucleosome spacing
+ GO:0017126, nucleologenesis
+ GO:0030466, chromatin silencing at silent mating-type cassette
+ GO:0030702, chromatin silencing at centromere
+ GO:0030717, karyosome formation
+ GO:0031048, small RNA-mediated chromatin silencing
+ GO:0031055, chromatin remodeling at centromere
+ GO:0031056, regulation of histone modification
+ GO:0031057, negative regulation of histone modification
+ GO:0031058, positive regulation of histone modification
+ GO:0031059, histone deacetylation at centromere
+ GO:0031060, regulation of histone methylation
+ GO:0031061, negative regulation of histone methylation
+ GO:0031062, positive regulation of histone methylation
+ GO:0031063, regulation of histone deacetylation
+ GO:0031064, negative regulation of histone deacetylation
+ GO:0031065, positive regulation of histone deacetylation
+ GO:0031066, regulation of histone deacetylation at centromere
+ GO:0031067, negative regulation of histone deacetylation at centromere
+ GO:0031068, positive regulation of histone deacetylation at centromere
+ GO:0035041, sperm chromatin decondensation
+ GO:0035042, fertilization, exchange of chromosomal proteins
+ GO:0035065, regulation of histone acetylation
+ GO:0035066, positive regulation of histone acetylation
+ GO:0035067, negative regulation of histone acetylation
+ GO:0035077, ecdysone-mediated polytene chromosome puffing
+ GO:0035079, polytene chromosome puffing
+ GO:0035080, heat shock-mediated polytene chromosome puffing
+ GO:0035092, sperm chromatin condensation
+ GO:0035093, spermatogenesis, exchange of chromosomal proteins
+ GO:0042766, nucleosome mobilization
+ GO:0043007, rDNA maintenance
+ GO:0043044, ATP-dependent chromatin remodeling
+ GO:0043156, chromatin remodeling in response to cation stress
+ GO:0043247, telomere maintenance in response to DNA damage
+ GO:0045046, peroxisome membrane protein import
+ GO:0045798, negative regulation of chromatin assembly or disassembly
+ GO:0045799, positive regulation of chromatin assembly or disassembly
+ GO:0048096, chromatin-mediated maintenance of transcription
+ GO:0048239, negative regulation of telomeric recombination at telomere
Terms movements under GO Slim term 'signal transduction ; GO:0007165'
- GO:0001508, regulation of action potential
- GO:0007272, ionic insulation of neurons by glial cells
- GO:0042552, myelination
- GO:0045759, negative regulation of action potential
- GO:0045760, positive regulation of action potential
Terms movements under GO Slim term 'development ; GO:0007275'
- GO:0001308, loss of chromatin silencing during replicative cell aging
+ GO:0040029, regulation of gene expression, epigenetic
Terms movements under GO Slim term 'physiological process ; GO:0007582'
+ GO:0000768, syncytium formation by plasma membrane fusion
+ GO:0000769, syncytium formation by mitosis without cell division
+ GO:0006810, transport
+ GO:0006948, viral-induced cell-cell fusion
+ GO:0006949, syncytium formation
+ GO:0007114, cell budding
+ GO:0007116, regulation of cell budding
+ GO:0007117, budding cell bud growth
+ GO:0007118, budding cell apical bud growth
+ GO:0007119, budding cell isotropic bud growth
+ GO:0007343, egg activation
+ GO:0007349, cellularization
+ GO:0008283, cell proliferation
+ GO:0009558, cellularization of megagametophyte
+ GO:0009796, cellularization (sensu Metazoa)
+ GO:0009797, cellularization (sensu Magnoliophyta)
+ GO:0016043, cell organization and biogenesis
+ GO:0019725, cell homeostasis
+ GO:0035212, cell competition (sensu Metazoa)
+ GO:0045781, negative regulation of cell budding
+ GO:0045782, positive regulation of cell budding
Terms movements under GO Slim term 'biological_process ; GO:0008150'
- GO:0040029, regulation of gene expression, epigenetic
Terms movements under GO Slim term GO:0008151 (merged into GO:0050875, cellular physiological process)
- GO:0000768, syncytium formation by plasma membrane fusion
- GO:0000769, syncytium formation by mitosis without cell division
- GO:0006810, transport
- GO:0006948, viral-induced cell-cell fusion
- GO:0006949, syncytium formation
- GO:0007114, cell budding
- GO:0007116, regulation of cell budding
- GO:0007117, budding cell bud growth
- GO:0007118, budding cell apical bud growth
- GO:0007119, budding cell isotropic bud growth
- GO:0007349, cellularization
- GO:0008283, cell proliferation
- GO:0009558, cellularization of megagametophyte
- GO:0009796, cellularization (sensu Metazoa)
- GO:0009797, cellularization (sensu Magnoliophyta)
- GO:0016043, cell organization and biogenesis
- GO:0019725, cell homeostasis
- GO:0035212, cell competition (sensu Metazoa)
- GO:0045781, negative regulation of cell budding
- GO:0045782, positive regulation of cell budding
Terms movements under GO Slim term 'metabolism ; GO:0008152'
+ GO:0006071, glycerol metabolism
+ GO:0006072, glycerol-3-phosphate metabolism
+ GO:0006085, acetyl-CoA biosynthesis
+ GO:0006086, acetyl-CoA biosynthesis from pyruvate
- GO:0006118, electron transport
- GO:0006119, oxidative phosphorylation
- GO:0006582, melanin metabolism
+ GO:0008154, actin polymerization and/or depolymerization
- GO:0009404, toxin metabolism
- GO:0015994, chlorophyll metabolism
- GO:0017143, insecticide metabolism
- GO:0018977, 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
- GO:0018978, anaerobic 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
+ GO:0019427, acetyl-CoA biosynthesis from acetate
+ GO:0019431, acetyl-CoA biosynthesis from ethanol
- GO:0030153, bacteriocin immunity
- GO:0030493, bacteriochlorophyll metabolism
+ GO:0030634, carbon fixation by acetyl-CoA pathway
- GO:0035006, melanization defense response
- GO:0035007, regulation of melanization defense response
- GO:0035008, positive regulation of melanization defense response
- GO:0035009, negative regulation of melanization defense response
- GO:0035011, melanotic encapsulation of foreign target
- GO:0042168, heme metabolism
- GO:0042440, pigment metabolism
- GO:0042441, eye pigment metabolism
- GO:0042574, retinal metabolism
- GO:0042810, pheromone metabolism
- GO:0046152, ommochrome metabolism
- GO:0046156, siroheme metabolism
- GO:0046158, ocellus pigment metabolism
- GO:0046160, heme a metabolism
- GO:0046162, heme c metabolism
- GO:0046224, bacteriocin metabolism
- GO:0046492, heme b metabolism
- GO:0048033, heme o metabolism
Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0050835, iron incorporation into iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide
+ GO:0050843, S-adenosylmethionine catabolism
Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
- GO:0001572, lactosylceramide biosynthesis
- GO:0001574, ganglioside biosynthesis
- GO:0001576, globoside biosynthesis
- GO:0006085, acetyl-CoA biosynthesis
- GO:0006086, acetyl-CoA biosynthesis from pyruvate
- GO:0006655, phosphatidylglycerol biosynthesis
- GO:0006656, phosphatidylcholine biosynthesis
- GO:0006657, CDP-choline pathway
- GO:0006659, phosphatidylserine biosynthesis
- GO:0006661, phosphatidylinositol biosynthesis
- GO:0006663, platelet activating factor biosynthesis
- GO:0006669, sphinganine-1-phosphate biosynthesis
- GO:0006679, glucosylceramide biosynthesis
- GO:0006682, galactosylceramide biosynthesis
- GO:0006686, sphingomyelin biosynthesis
- GO:0006688, glycosphingolipid biosynthesis
- GO:0006694, steroid biosynthesis
- GO:0006695, cholesterol biosynthesis
- GO:0006696, ergosterol biosynthesis
- GO:0008299, isoprenoid biosynthesis
- GO:0008610, lipid biosynthesis
- GO:0008654, phospholipid biosynthesis
- GO:0009241, polyisoprenoid biosynthesis
- GO:0009247, glycolipid biosynthesis
+ GO:0009832, cell wall biosynthesis (sensu Magnoliophyta)
+ GO:0009833, primary cell wall biosynthesis (sensu Magnoliophyta)
+ GO:0009834, secondary cell wall biosynthesis (sensu Magnoliophyta)
+ GO:0009920, cell plate formation (sensu Magnoliophyta)
+ GO:0010215, cellulose microfibril organization
- GO:0016091, prenol biosynthesis
- GO:0016094, polyprenol biosynthesis
- GO:0016126, sterol biosynthesis
- GO:0016129, phytosteroid biosynthesis
- GO:0016132, brassinosteroid biosynthesis
- GO:0019375, galactolipid biosynthesis
- GO:0019408, dolichol biosynthesis
- GO:0019427, acetyl-CoA biosynthesis from acetate
- GO:0019431, acetyl-CoA biosynthesis from ethanol
- GO:0030148, sphingolipid biosynthesis
- GO:0030634, carbon fixation by acetyl-CoA pathway
- GO:0043048, dolichyl monophosphate biosynthesis
- GO:0045017, glycerolipid biosynthesis
- GO:0045337, farnesyl diphosphate biosynthesis
- GO:0046460, neutral lipid biosynthesis
- GO:0046467, membrane lipid biosynthesis
- GO:0046474, glycerophospholipid biosynthesis
- GO:0046476, glycosylceramide biosynthesis
- GO:0046489, phosphoinositide biosynthesis
- GO:0046511, sphinganine biosynthesis
- GO:0046512, sphingosine biosynthesis
- GO:0046513, ceramide biosynthesis
- GO:0046520, sphingoid biosynthesis
- GO:0050992, dimethylallyl diphosphate biosynthesis
Terms movements under GO Slim term 'response to external stimulus ; GO:0009605'
- GO:0009693, ethylene biosynthesis
- GO:0042218, 1-aminocyclopropane-1-carboxylate biosynthesis
Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607'
- GO:0009693, ethylene biosynthesis
- GO:0042218, 1-aminocyclopropane-1-carboxylate biosynthesis
Terms movements under GO Slim term 'protein transport ; GO:0015031'
+ GO:0016560, peroxisome matrix protein import, docking
+ GO:0016561, peroxisome matrix protein import, translocation
+ GO:0016562, peroxisome matrix protein import, receptor recycling
Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
- GO:0000183, chromatin silencing at ribosomal DNA
- GO:0000722, telomerase-independent telomere maintenance
- GO:0000723, telomere maintenance
- GO:0001308, loss of chromatin silencing during replicative cell aging
- GO:0001672, regulation of chromatin assembly or disassembly
- GO:0006324, S-phase regulated histone modification
- GO:0006325, establishment and/or maintenance of chromatin architecture
- GO:0006333, chromatin assembly or disassembly
- GO:0006334, nucleosome assembly
- GO:0006335, DNA replication-dependent nucleosome assembly
- GO:0006336, DNA replication-independent nucleosome assembly
- GO:0006337, nucleosome disassembly
- GO:0006338, chromatin remodeling
- GO:0006342, chromatin silencing
- GO:0006343, establishment of chromatin silencing
- GO:0006344, maintenance of chromatin silencing
- GO:0006345, loss of chromatin silencing
- GO:0006346, methylation-dependent chromatin silencing
- GO:0006348, chromatin silencing at telomere
- GO:0007000, nucleolus organization and biogenesis
- GO:0007001, chromosome organization and biogenesis (sensu Eukaryota)
- GO:0007004, telomerase-dependent telomere maintenance
- GO:0016233, telomere capping
- GO:0016568, chromatin modification
- GO:0016569, covalent chromatin modification
- GO:0016570, histone modification
- GO:0016571, histone methylation
- GO:0016572, histone phosphorylation
- GO:0016573, histone acetylation
- GO:0016574, histone ubiquitination
- GO:0016575, histone deacetylation
- GO:0016576, histone dephosphorylation
- GO:0016577, histone demethylation
- GO:0016578, histone deubiquitination
- GO:0016582, non-covalent chromatin modification
- GO:0016584, nucleosome spacing
- GO:0017126, nucleologenesis
- GO:0030466, chromatin silencing at silent mating-type cassette
- GO:0030702, chromatin silencing at centromere
- GO:0030717, karyosome formation
- GO:0031048, small RNA-mediated chromatin silencing
- GO:0031055, chromatin remodeling at centromere
- GO:0031056, regulation of histone modification
- GO:0031057, negative regulation of histone modification
- GO:0031058, positive regulation of histone modification
- GO:0031059, histone deacetylation at centromere
- GO:0031060, regulation of histone methylation
- GO:0031061, negative regulation of histone methylation
- GO:0031062, positive regulation of histone methylation
- GO:0031063, regulation of histone deacetylation
- GO:0031064, negative regulation of histone deacetylation
- GO:0031065, positive regulation of histone deacetylation
- GO:0031066, regulation of histone deacetylation at centromere
- GO:0031067, negative regulation of histone deacetylation at centromere
- GO:0031068, positive regulation of histone deacetylation at centromere
- GO:0035041, sperm chromatin decondensation
- GO:0035042, fertilization, exchange of chromosomal proteins
- GO:0035065, regulation of histone acetylation
- GO:0035066, positive regulation of histone acetylation
- GO:0035067, negative regulation of histone acetylation
- GO:0035077, ecdysone-mediated polytene chromosome puffing
- GO:0035079, polytene chromosome puffing
- GO:0035080, heat shock-mediated polytene chromosome puffing
- GO:0035092, sperm chromatin condensation
- GO:0035093, spermatogenesis, exchange of chromosomal proteins
- GO:0042766, nucleosome mobilization
- GO:0043007, rDNA maintenance
- GO:0043044, ATP-dependent chromatin remodeling
- GO:0043156, chromatin remodeling in response to cation stress
- GO:0043247, telomere maintenance in response to DNA damage
- GO:0045798, negative regulation of chromatin assembly or disassembly
- GO:0045799, positive regulation of chromatin assembly or disassembly
- GO:0048096, chromatin-mediated maintenance of transcription
- GO:0048239, negative regulation of telomeric recombination at telomere
Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
+ GO:0000245, spliceosome assembly
+ GO:0000348, nuclear mRNA branch site recognition
+ GO:0000352, trans assembly of SL containing precatalytic spliceosome
+ GO:0000354, cis assembly of pre-catalytic spliceosome(3)
+ GO:0000360, cis assembly of U2-type pre-catalytic spliceosome
+ GO:0000361, cis assembly of U12-type pre-catalytic spliceosome
+ GO:0000368, U2-type nuclear mRNA 5'-splice site recognition
+ GO:0000369, U12-type nuclear mRNA 5'-splice site recognition
+ GO:0000370, U2-type nuclear mRNA branch site recognition
+ GO:0000371, U12-type nuclear mRNA branch site recognition
+ GO:0000382, U12-type nuclear mRNA 3'-splice site recognition
+ GO:0000383, U2-type nuclear mRNA 3'-splice site recognition
+ GO:0000389, nuclear mRNA 3'-splice site recognition
+ GO:0000390, spliceosome dissembly
+ GO:0000391, U2-type spliceosome dissembly
+ GO:0000392, U12-type spliceosome dissembly
+ GO:0000395, nuclear mRNA 5'-splice site recognition
+ GO:0000707, meiotic DNA recombinase assembly
+ GO:0000730, DNA recombinase assembly
+ GO:0006334, nucleosome assembly
+ GO:0006335, DNA replication-dependent nucleosome assembly
+ GO:0006336, DNA replication-independent nucleosome assembly
+ GO:0006337, nucleosome disassembly
+ GO:0006376, mRNA splice site selection
+ GO:0007146, meiotic recombination nodule assembly
- GO:0008154, actin polymerization and/or depolymerization
+ GO:0016584, nucleosome spacing
+ GO:0030241, muscle thick filament assembly
+ GO:0031034, myosin filament assembly
+ GO:0031035, myosin filament disassembly
+ GO:0031036, myosin II filament assembly
+ GO:0031037, myosin II filament disassembly
+ GO:0042139, early meiotic recombination nodule assembly
+ GO:0042140, late meiotic recombination nodule assembly
Terms movements under GO Slim term 'secondary metabolism ; GO:0019748'
+ GO:0006582, melanin metabolism
+ GO:0006583, melanin biosynthesis from tyrosine
+ GO:0006714, sesquiterpenoid metabolism
+ GO:0006715, farnesol biosynthesis
+ GO:0006716, juvenile hormone metabolism
+ GO:0006718, juvenile hormone biosynthesis
+ GO:0006719, juvenile hormone catabolism
+ GO:0006721, terpenoid metabolism
+ GO:0006722, triterpenoid metabolism
+ GO:0006726, eye pigment biosynthesis
+ GO:0006727, ommochrome biosynthesis
+ GO:0006782, protoporphyrinogen IX biosynthesis
+ GO:0006783, heme biosynthesis
+ GO:0006784, heme a biosynthesis
+ GO:0006785, heme b biosynthesis
+ GO:0006786, heme c biosynthesis
+ GO:0006788, heme oxidation
+ GO:0007556, regulation of juvenile hormone metabolism
+ GO:0007557, regulation of juvenile hormone biosynthesis
+ GO:0008055, ocellus pigment biosynthesis
+ GO:0009403, toxin biosynthesis
+ GO:0009404, toxin metabolism
+ GO:0009407, toxin catabolism
+ GO:0009685, gibberellic acid metabolism
+ GO:0009686, gibberellic acid biosynthesis
+ GO:0009687, abscisic acid metabolism
+ GO:0009688, abscisic acid biosynthesis
+ GO:0010028, xanthophyll cycle
+ GO:0010115, regulation of abscisic acid biosynthesis
+ GO:0010116, positive regulation of abscisic acid biosynthesis
+ GO:0010142, mevalonate pathway
+ GO:0015994, chlorophyll metabolism
+ GO:0015995, chlorophyll biosynthesis
+ GO:0015996, chlorophyll catabolism
+ GO:0016063, rhodopsin biosynthesis
+ GO:0016098, monoterpenoid metabolism
+ GO:0016099, monoterpenoid biosynthesis
+ GO:0016100, monoterpenoid catabolism
+ GO:0016101, diterpenoid metabolism
+ GO:0016102, diterpenoid biosynthesis
+ GO:0016103, diterpenoid catabolism
+ GO:0016104, triterpenoid biosynthesis
+ GO:0016105, triterpenoid catabolism
+ GO:0016106, sesquiterpenoid biosynthesis
+ GO:0016107, sesquiterpenoid catabolism
+ GO:0016108, tetraterpenoid metabolism
+ GO:0016109, tetraterpenoid biosynthesis
+ GO:0016110, tetraterpenoid catabolism
+ GO:0016111, polyterpenoid metabolism
+ GO:0016112, polyterpenoid biosynthesis
+ GO:0016113, polyterpenoid catabolism
+ GO:0016114, terpenoid biosynthesis
+ GO:0016115, terpenoid catabolism
+ GO:0016116, carotenoid metabolism
+ GO:0016117, carotenoid biosynthesis
+ GO:0016118, carotenoid catabolism
+ GO:0016119, carotene metabolism
+ GO:0016120, carotene biosynthesis
+ GO:0016121, carotene catabolism
+ GO:0016122, xanthophyll metabolism
+ GO:0016123, xanthophyll biosynthesis
+ GO:0016124, xanthophyll catabolism
+ GO:0016134, saponin metabolism
+ GO:0016135, saponin biosynthesis
+ GO:0016136, saponin catabolism
+ GO:0016487, farnesol metabolism
+ GO:0016488, farnesol catabolism
+ GO:0017143, insecticide metabolism
+ GO:0018977, 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
+ GO:0018978, anaerobic 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
+ GO:0019352, protoporphyrinogen IX biosynthesis from glycine
+ GO:0019353, protoporphyrinogen IX biosynthesis from glutamate
+ GO:0019354, siroheme biosynthesis
+ GO:0019741, pentacyclic triterpenoid catabolism
+ GO:0019742, pentacyclic triterpenoid metabolism
+ GO:0019743, hopanoid catabolism
+ GO:0019744, hopanoid metabolism
+ GO:0019745, pentacyclic triterpenoid biosynthesis
+ GO:0019746, hopanoid biosynthesis
+ GO:0030152, bacteriocin biosynthesis
+ GO:0030153, bacteriocin immunity
+ GO:0030493, bacteriochlorophyll metabolism
+ GO:0030494, bacteriochlorophyll biosynthesis
+ GO:0030495, bacteriochlorophyll catabolism
+ GO:0035006, melanization defense response
+ GO:0035007, regulation of melanization defense response
+ GO:0035008, positive regulation of melanization defense response
+ GO:0035009, negative regulation of melanization defense response
+ GO:0035011, melanotic encapsulation of foreign target
+ GO:0042167, heme catabolism
+ GO:0042168, heme metabolism
+ GO:0042188, 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane catabolism
+ GO:0042438, melanin biosynthesis
+ GO:0042440, pigment metabolism
+ GO:0042441, eye pigment metabolism
+ GO:0042574, retinal metabolism
+ GO:0042810, pheromone metabolism
+ GO:0042811, pheromone biosynthesis
+ GO:0042812, pheromone catabolism
+ GO:0045487, gibberellic acid catabolism
+ GO:0045928, negative regulation of juvenile hormone metabolism
+ GO:0045929, positive regulation of juvenile hormone metabolism
+ GO:0045952, regulation of juvenile hormone catabolism
+ GO:0045968, negative regulation of juvenile hormone biosynthesis
+ GO:0045969, positive regulation of juvenile hormone biosynthesis
+ GO:0045970, negative regulation of juvenile hormone catabolism
+ GO:0045971, positive regulation of juvenile hormone catabolism
+ GO:0046148, pigment biosynthesis
+ GO:0046149, pigment catabolism
+ GO:0046150, melanin catabolism
+ GO:0046151, eye pigment catabolism
+ GO:0046152, ommochrome metabolism
+ GO:0046153, ommochrome catabolism
+ GO:0046154, rhodopsin metabolism
+ GO:0046155, rhodopsin catabolism
+ GO:0046156, siroheme metabolism
+ GO:0046157, siroheme catabolism
+ GO:0046158, ocellus pigment metabolism
+ GO:0046159, ocellus pigment catabolism
+ GO:0046160, heme a metabolism
+ GO:0046161, heme a catabolism
+ GO:0046162, heme c metabolism
+ GO:0046163, heme c catabolism
+ GO:0046224, bacteriocin metabolism
+ GO:0046225, bacteriocin catabolism
+ GO:0046345, abscisic acid catabolism
+ GO:0046492, heme b metabolism
+ GO:0046701, insecticide catabolism
+ GO:0048021, regulation of melanin biosynthesis
+ GO:0048022, negative regulation of melanin biosynthesis
+ GO:0048023, positive regulation of melanin biosynthesis
+ GO:0048033, heme o metabolism
+ GO:0048034, heme o biosynthesis
+ GO:0048035, heme o catabolism
Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
+ GO:0007277, pole cell development
+ GO:0007279, pole cell formation
New terms in cellular_component ontology (9 new terms)
GO:0001931 GO:0005886 MGI D 1035336 uropod
GO:0031074 GO:0005622 MAH D 860709 nucleocytoplasmic shuttling complex
GO:0031080 GO:0005635 MAH D 1081397 Nup107-160 complex
GO:0031082 GO:0005829 MAH D 1084993 BLOC complex
GO:0031083 GO:0005829 MAH D 1084993 BLOC-1 complex
GO:0031084 GO:0005829 MAH D 1084993 BLOC-2 complex
GO:0031085 GO:0005829 MAH D 1084993 BLOC-3 complex
GO:0035301 GO:0005622 FB D 1035336 Hedgehog signaling complex
GO:0043291 GO:0005737 JL D 1080975 RAVE complex
Term name changes in cellular_component ontology
GO:0005780: intra-peroxisomal peripheral membrane --> extrinsic to intraperoxisomal membrane
GO:0009344: nitrite reductase complex (NAD(P)H) --> nitrite reductase complex [NAD(P)H]
GO:0009352: dihydrolipoamide dehydrogenase complex --> dihydrolipoyl dehydrogenase complex
GO:0009382: imidazoleglycerol-phosphate synthase complex --> imidazoleglycerol phosphate synthase complex
New definitions for cellular_component ontology terms (25 new definitions)
GO:0005780, extrinsic to intraperoxisomal membrane
GO:0005914, spot adherens junction
GO:0005916, fascia adherens
GO:0005917, nephrocyte junction
GO:0005919, pleated septate junction
GO:0005920, smooth septate junction
GO:0005926, connecting hemi-adherens junction
GO:0005927, muscle tendon junction
GO:0005928, apical hemi-adherens junction
GO:0005946, alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)
GO:0005948, acetolactate synthase complex
GO:0008074, guanylate cyclase complex, soluble
GO:0008247, 2-acetyl-1-alkylglycerophosphocholine esterase complex
GO:0009316, 3-isopropylmalate dehydratase complex
GO:0009319, cytochrome o ubiquinol oxidase complex
GO:0009320, phosphoribosylaminoimidazole carboxylase complex
GO:0009321, alkyl hydroperoxide reductase complex
GO:0009324, D-amino-acid dehydrogenase complex
GO:0009330, DNA topoisomerase complex (ATP-hydrolyzing)
GO:0009334, 3-phenylpropionate dioxygenase complex
GO:0009337, sulfite reductase complex (NADPH)
GO:0009344, nitrite reductase complex [NAD(P)H]
GO:0009352, dihydrolipoyl dehydrogenase complex
GO:0009358, polyphosphate kinase complex
GO:0009382, imidazoleglycerol phosphate synthase complex
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0042563, importin alpha-subunit nuclear export complex
+ GO:0042564, NLS-dependent protein nuclear import complex
+ GO:0042565, RNA nuclear export complex
Terms movements under GO Slim term 'nuclear membrane ; GO:0005635'
- GO:0042563, importin alpha-subunit nuclear export complex
- GO:0042564, NLS-dependent protein nuclear import complex
- GO:0042565, RNA nuclear export complex
New terms in molecular_function ontology (12 new terms)
GO:0031071 GO:0016740 MAH D 1076705 cysteine desulfurase
GO:0031072 GO:0005515 MAH D 1076769 heat shock protein binding
GO:0031073 GO:0003824 MAH D 1077714 cholesterol 26-hydroxylase activity
GO:0031078 GO:0016787 MAH D 1085068 histone deacetylase activity (H3-K14 specific)
GO:0031079 GO:0008233 MAH D 1085079 picornain 3C activity
GO:0035299 GO:0016301 FB D 1076107 inositol pentakisphosphate 2-kinase activity
GO:0035300 GO:0016301 FB D 1076107 inositol trisphosphate 5/6-kinase activity
GO:0035302 GO:0003824 FB D 1082858 ecdysteroid 25-hydroxylase activity
GO:0043273 GO:0016787 JL D 1035336 CTPase activity
GO:0043274 GO:0005515 JL D 1035336 phospholipase binding
GO:0043275 GO:0008233 JL D 1078233 glutamate carboxypeptidase II activity
GO:0043287 GO:0005488 JL D 1080270 poly(3-hydroxyalkanoate) binding
New obsoletions in molecular_function ontology
GO:0005396, transmembrane conductance regulator activity: its meaning was ambiguous, it was undefined and its position in the tree wrong.
GO:0016910, SAP kinase 3 activity: describes a gene product.
GO:0016911, SAP kinase 4 activity: describes a gene product.
GO:0016912, SAP kinase 5 activity: there are no known gene products that would be described as 'SAP kinase 5', and the term name implies that it refers to a gene product.
Term name changes in molecular_function ontology
GO:0008308: voltage-dependent ion-selective channel activity --> voltage-gated ion-selective channel activity
GO:0015458: low voltage-dependent potassium channel auxiliary protein activity --> low voltage-gated potassium channel auxiliary protein activity
GO:0015482: voltage-dependent anion channel porin activity --> voltage-gated anion channel porin activity
GO:0046609: voltage-sensitive sulfate antiporter activity --> voltage-gated sulfate antiporter activity
New definitions for molecular_function ontology terms (16 new definitions)
GO:0004711, ribosomal protein S6 kinase activity
GO:0005052, peroxisome targeting signal-1 receptor activity
GO:0005053, peroxisome targeting signal-2 receptor activity
GO:0005396, transmembrane conductance regulator activity
GO:0008827, cytochrome o ubiquinol oxidase activity
GO:0016496, substance P receptor activity
GO:0016497, substance K receptor activity
GO:0016498, neuromedin K receptor activity
GO:0016910, SAP kinase 3 activity
GO:0016911, SAP kinase 4 activity
GO:0016912, SAP kinase 5 activity
GO:0017002, activin receptor activity
GO:0017170, KU70 binding
GO:0018754, ammelide aminohydrolase activity
GO:0018756, ammeline aminohydrolase activity
GO:0042071, leucokinin receptor activity
Term movements in molecular_function ontology:
Terms movements under GO Slim term 'kinase activity ; GO:0016301'
+ GO:0050516, inositol-polyphosphate multikinase activity
Terms movements under GO Slim term 'transferase activity ; GO:0016740'
- GO:0050516, inositol-polyphosphate multikinase activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1003468 Fixed children of GO:0042626 [none]
1011414 Fixed tpv: ethylene biosynthesis possibly? GO:0043272
1027363 Fixed Definition/parentage of "ionic insulation of neurons..." [none]
1036019 None GO:0006266 : DNA ligation [none]
1068216 Accepted change of reponse to arsenate [none]
1070915 Accepted segmentation: new term request GO:0035282
1071986 Fixed tvp: chromosome organization and biogenesis GO:0051276-51277
1072672 Accepted CNS/brain/appendage/leg segmentation new terms GO:0035283-35292
1073218 Fixed muscle contraction TPV [none]
1075931 Fixed missing parents:peroxisome receptor docking [none]
1076031 Fixed inositol/phosphatidylinositol definitions and parentage edit GO:0051273-51275
1076044 Works For Me missing relationship/meitoic joint molecule formation [none]
1076107 Fixed 'multi-function' inositol enzymes GO:0035299-35300
1076591 Fixed Dbxref for GO:4855 and GO:4854 [none]
1076705 Accepted EC 2.8.1.7 GO:0031071
1076769 Accepted ntr heat shock protein binding GO:0031072
1076800 Fixed query possible missing parent ERAD/proteasomal [none]
1077704 Rejected miossing parent GO:0045005 : maintenanc.. [none]
1077714 Accepted cholesterol 26-hydroxylase activity GO:0031073
1078233 Accepted GO term for 3.4.17.21? GO:0043275
1078311 Works For Me missing parent for vesicle med tr [none]
1079599 Accepted GO:0031028 : septation initiation signaling [none]
1079875 Fixed Semi-defined term GO:0009334 [none]
1079944 Fixed cant find aminoadipate reductase [none]
1080270 Accepted polyhydroxyalkanoate GO terms GO:0043286-43287
1080975 Accepted RAVE complex - New term for component ontology GO:0043291
1080977 Accepted deadenylation-independent decapping - Process term & parent GO:0031086-31087
1081397 Accepted Nup107-120 complex (NPC subcomplex) GO:0031080-31081
1081980 Accepted COMPASS complex add synonyms [none]
1082858 Accepted ecdysteroid 25-hydroxylase activity GO:0035302
1083111 Fixed synonym/term string are same for fgf receptor sign. pathway [none]
1084993 Accepted New complex term (BLOC-1) GO:0031082-31085
1085068 Accepted ntr: histone deacetylase activity (H3-K14 specific) GO:0031078
1085079 Accepted EC 3.4.22.28 GO:0031079
1085103 Fixed tpv :RNA interference ? [none]
1085145 Works For Me 'protein complex' parentage for 'tubulin'? [none]
1085188 Accepted regulation of dephosphorylation GO:0035303-35308
1087237 Fixed cell expansion as alias [none]
1088652 Fixed "positive regulation of muscle contraction" redefinition [none]
578091 Fixed definitions for enzyme complexes [none]
814460 Fixed very very urgent...metabolism parentage [none]
852632 Fixed oogenesis definitions in wrong place [none]
857612 Fixed cuticle biosynthesis GO:0042335 [none]
860709 Fixed parentage of 'RNA nuclear export complex' ; GO:0042565 GO:0031074
908969 Out of Date necessarily is_part violations [none]
939379 Accepted tubes GO:0035239 GO:0035295-35298
948605 Accepted tree under eye morphogenesis needs a massage GO:0031075-31077
981441 Accepted SAP kinase 5 activity [16912] obsoletion? [none]
Statistics:
biological_process: 9254 terms, 96.2% defined (8899 terms defined)
cellular_component: 1510 terms, 93.7% defined (1415 terms defined)
molecular_function: 7455 terms, 89.9% defined (6699 terms defined)
Total: 18219 terms, 93.4% defined (17013 terms defined)
Term errors
none