Ontology Comparison Report ========================== Files used: file 1 (old): gene_ontology_edit.obo.2006-12-01; date: 30:11:2006 16:32; CVS revision: 5.54 file 2 (new): gene_ontology_edit.obo.2007-01-01; date: 21:12:2006 16:06; CVS revision: 5.72 subset: goslim_generic New terms ========= KEY:columns are separated by tabs ID name namespace nearest GO slim parent terms GO:0000507 1-acylglycerophosphocholine O-acyltransferase molecular_function GO:0016740 GO:0000508 Rpd3L complex cellular_component GO:0005654, GO:0043234 GO:0000509 Rpd3S complex cellular_component GO:0005654, GO:0043234 GO:0010313 phytochrome binding molecular_function GO:0005515 GO:0010314 phosphatidylinositol-5-phosphate binding molecular_function GO:0008289 GO:0010315 auxin efflux biological_process GO:0006810, GO:0007582 GO:0010316 pyrophosphate-dependent phosphofructokinase complex cellular_component GO:0043234 GO:0010317 pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex cellular_component GO:0043234 GO:0010318 pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex cellular_component GO:0043234 GO:0010319 stromule cellular_component GO:0005575, GO:0009536 GO:0010320 arginine/lysine endopeptidase activity molecular_function GO:0008233 GO:0010321 regulation of vegetative phase change biological_process GO:0007275, GO:0050789 GO:0010322 regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway biological_process GO:0006629, GO:0009058, GO:0050789 GO:0010323 negative regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway biological_process GO:0006629, GO:0009058, GO:0050789 GO:0032479 regulation of interferon type I production biological_process GO:0007582 GO:0032480 negative regulation of interferon type I production biological_process GO:0007582 GO:0032481 positive regulation of interferon type I production biological_process GO:0007582 GO:0032482 Rab protein signal transduction biological_process GO:0007165 GO:0032483 regulation of Rab protein signal transduction biological_process GO:0007165, GO:0050789 GO:0032484 Ral protein signal transduction biological_process GO:0007165 GO:0032485 regulation of Ral protein signal transduction biological_process GO:0007165, GO:0050789 GO:0032486 Rap protein signal transduction biological_process GO:0007165 GO:0032487 regulation of Rap protein signal transduction biological_process GO:0007165, GO:0050789 GO:0032488 Cdc42 protein signal transduction biological_process GO:0007165 GO:0032489 regulation of Cdc42 protein signal transduction biological_process GO:0007165, GO:0050789 GO:0032490 detection of molecule of bacterial origin biological_process GO:0007582, GO:0009607 GO:0032491 detection of molecule of fungal origin biological_process GO:0007582, GO:0009607 GO:0032492 detection of molecule of oomycetes origin biological_process GO:0007582, GO:0009607 GO:0032493 response to bacterial lipoprotein biological_process GO:0009607 GO:0032494 response to peptidoglycan biological_process GO:0009607 GO:0032495 response to muramyl dipeptide biological_process GO:0009607 GO:0032496 response to lipopolysaccharide biological_process GO:0009607 GO:0032497 detection of lipopolysaccharide biological_process GO:0007582, GO:0009607 GO:0032498 detection of muramyl dipeptide biological_process GO:0007582, GO:0009607 GO:0032499 detection of peptidoglycan biological_process GO:0007582, GO:0009607 GO:0032500 muramyl dipeptide binding molecular_function GO:0005488 GO:0032601 connective tissue growth factor production biological_process GO:0007582 GO:0032602 chemokine production biological_process GO:0007582 GO:0032603 fractalkine production biological_process GO:0007582 GO:0032604 granulocyte macrophage colony-stimulating factor production biological_process GO:0007582 GO:0032605 hepatocyte growth factor production biological_process GO:0007582 GO:0032606 interferon type I production biological_process GO:0007582 GO:0032607 interferon-alpha production biological_process GO:0007582 GO:0032608 interferon-beta production biological_process GO:0007582 GO:0032609 interferon-gamma production biological_process GO:0007582 GO:0032610 interleukin-1 alpha production biological_process GO:0007582 GO:0032611 interleukin-1 beta production biological_process GO:0007582 GO:0032612 interleukin-1 production biological_process GO:0007582 GO:0032613 interleukin-10 production biological_process GO:0007582 GO:0032614 interleukin-11 production biological_process GO:0007582 GO:0032615 interleukin-12 production biological_process GO:0007582 GO:0032616 interleukin-13 production biological_process GO:0007582 GO:0032617 interleukin-14 production biological_process GO:0007582 GO:0032618 interleukin-15 production biological_process GO:0007582 GO:0032619 interleukin-16 production biological_process GO:0007582 GO:0032620 interleukin-17 production biological_process GO:0007582 GO:0032621 interleukin-18 production biological_process GO:0007582 GO:0032622 interleukin-19 production biological_process GO:0007582 GO:0032623 interleukin-2 production biological_process GO:0007582 GO:0032624 interleukin-20 production biological_process GO:0007582 GO:0032625 interleukin-21 production biological_process GO:0007582 GO:0032626 interleukin-22 production biological_process GO:0007582 GO:0032627 interleukin-23 production biological_process GO:0007582 GO:0032628 interleukin-24 production biological_process GO:0007582 GO:0032629 interleukin-25 production biological_process GO:0007582 GO:0032630 interleukin-26 production biological_process GO:0007582 GO:0032631 interleukin-27 production biological_process GO:0007582 GO:0032632 interleukin-3 production biological_process GO:0007582 GO:0032633 interleukin-4 production biological_process GO:0007582 GO:0032634 interleukin-5 production biological_process GO:0007582 GO:0032635 interleukin-6 production biological_process GO:0007582 GO:0032636 interleukin-7 production biological_process GO:0007582 GO:0032637 interleukin-8 production biological_process GO:0007582 GO:0032638 interleukin-9 production biological_process GO:0007582 GO:0032639 TRAIL production biological_process GO:0007582 GO:0032640 tumor necrosis factor-alpha production biological_process GO:0007582 GO:0032641 tumor necrosis factor-beta production biological_process GO:0007582 GO:0032642 regulation of chemokine production biological_process GO:0007582 GO:0032643 regulation of connective tissue growth factor production biological_process GO:0007582 GO:0032644 regulation of fractalkine production biological_process GO:0007582 GO:0032645 regulation of granulocyte macrophage colony-stimulating factor production biological_process GO:0007582 GO:0032646 regulation of hepatocyte growth factor production biological_process GO:0007582 GO:0032647 regulation of interferon-alpha production biological_process GO:0007582 GO:0032648 regulation of interferon-beta production biological_process GO:0007582 GO:0032649 regulation of interferon-gamma production biological_process GO:0007582 GO:0032650 regulation of interleukin-1 alpha production biological_process GO:0007582 GO:0032651 regulation of interleukin-1 beta production biological_process GO:0007582 GO:0032652 regulation of interleukin-1 production biological_process GO:0007582 GO:0032653 regulation of interleukin-10 production biological_process GO:0007582 GO:0032654 regulation of interleukin-11 production biological_process GO:0007582 GO:0032655 regulation of interleukin-12 production biological_process GO:0007582 GO:0032656 regulation of interleukin-13 production biological_process GO:0007582 GO:0032657 regulation of interleukin-14 production biological_process GO:0007582 GO:0032658 regulation of interleukin-15 production biological_process GO:0007582 GO:0032659 regulation of interleukin-16 production biological_process GO:0007582 GO:0032660 regulation of interleukin-17 production biological_process GO:0007582 GO:0032661 regulation of interleukin-18 production biological_process GO:0007582 GO:0032662 regulation of interleukin-19 production biological_process GO:0007582 GO:0032663 regulation of interleukin-2 production biological_process GO:0007582 GO:0032664 regulation of interleukin-20 production biological_process GO:0007582 GO:0032665 regulation of interleukin-21 production biological_process GO:0007582 GO:0032666 regulation of interleukin-22 production biological_process GO:0007582 GO:0032667 regulation of interleukin-23 production biological_process GO:0007582 GO:0032668 regulation of interleukin-24 production biological_process GO:0007582 GO:0032669 regulation of interleukin-25 production biological_process GO:0007582 GO:0032670 regulation of interleukin-26 production biological_process GO:0007582 GO:0032671 regulation of interleukin-27 production biological_process GO:0007582 GO:0032672 regulation of interleukin-3 production biological_process GO:0007582 GO:0032673 regulation of interleukin-4 production biological_process GO:0007582 GO:0032674 regulation of interleukin-5 production biological_process GO:0007582 GO:0032675 regulation of interleukin-6 production biological_process GO:0007582 GO:0032676 regulation of interleukin-7 production biological_process GO:0007582 GO:0032677 regulation of interleukin-8 production biological_process GO:0007582 GO:0032678 regulation of interleukin-9 production biological_process GO:0007582 GO:0032679 regulation of TRAIL production biological_process GO:0007582 GO:0032680 regulation of tumor necrosis factor-alpha production biological_process GO:0007582 GO:0032681 regulation of tumor necrosis factor-beta production biological_process GO:0007582 GO:0032682 negative regulation of chemokine production biological_process GO:0007582 GO:0032683 negative regulation of connective tissue growth factor production biological_process GO:0007582 GO:0032684 negative regulation of fractalkine production biological_process GO:0007582 GO:0032685 negative regulation of granulocyte macrophage colony-stimulating factor production biological_process GO:0007582 GO:0032686 negative regulation of hepatocyte growth factor production biological_process GO:0007582 GO:0032687 negative regulation of interferon-alpha production biological_process GO:0007582 GO:0032688 negative regulation of interferon-beta production biological_process GO:0007582 GO:0032689 negative regulation of interferon-gamma production biological_process GO:0007582 GO:0032690 negative regulation of interleukin-1 alpha production biological_process GO:0007582 GO:0032691 negative regulation of interleukin-1 beta production biological_process GO:0007582 GO:0032692 negative regulation of interleukin-1 production biological_process GO:0007582 GO:0032693 negative regulation of interleukin-10 production biological_process GO:0007582 GO:0032694 negative regulation of interleukin-11 production biological_process GO:0007582 GO:0032695 negative regulation of interleukin-12 production biological_process GO:0007582 GO:0032696 negative regulation of interleukin-13 production biological_process GO:0007582 GO:0032697 negative regulation of interleukin-14 production biological_process GO:0007582 GO:0032698 negative regulation of interleukin-15 production biological_process GO:0007582 GO:0032699 negative regulation of interleukin-16 production biological_process GO:0007582 GO:0032700 negative regulation of interleukin-17 production biological_process GO:0007582 GO:0032701 negative regulation of interleukin-18 production biological_process GO:0007582 GO:0032702 negative regulation of interleukin-19 production biological_process GO:0007582 GO:0032703 negative regulation of interleukin-2 production biological_process GO:0007582 GO:0032704 negative regulation of interleukin-20 production biological_process GO:0007582 GO:0032705 negative regulation of interleukin-21 production biological_process GO:0007582 GO:0032706 negative regulation of interleukin-22 production biological_process GO:0007582 GO:0032707 negative regulation of interleukin-23 production biological_process GO:0007582 GO:0032708 negative regulation of interleukin-24 production biological_process GO:0007582 GO:0032709 negative regulation of interleukin-25 production biological_process GO:0007582 GO:0032710 negative regulation of interleukin-26 production biological_process GO:0007582 GO:0032711 negative regulation of interleukin-27 production biological_process GO:0007582 GO:0032712 negative regulation of interleukin-3 production biological_process GO:0007582 GO:0032713 negative regulation of interleukin-4 production biological_process GO:0007582 GO:0032714 negative regulation of interleukin-5 production biological_process GO:0007582 GO:0032715 negative regulation of interleukin-6 production biological_process GO:0007582 GO:0032716 negative regulation of interleukin-7 production biological_process GO:0007582 GO:0032717 negative regulation of interleukin-8 production biological_process GO:0007582 GO:0032718 negative regulation of interleukin-9 production biological_process GO:0007582 GO:0032719 negative regulation of TRAIL production biological_process GO:0007582 GO:0032720 negative regulation of tumor necrosis factor-alpha production biological_process GO:0007582 GO:0032721 negative regulation of tumor necrosis factor-beta production biological_process GO:0007582 GO:0032722 positive regulation of chemokine production biological_process GO:0007582 GO:0032723 positive regulation of connective tissue growth factor production biological_process GO:0007582 GO:0032724 positive regulation of fractalkine production biological_process GO:0007582 GO:0032725 positive regulation of granulocyte macrophage colony-stimulating factor production biological_process GO:0007582 GO:0032726 positive regulation of hepatocyte growth factor production biological_process GO:0007582 GO:0032727 positive regulation of interferon-alpha production biological_process GO:0007582 GO:0032728 positive regulation of interferon-beta production biological_process GO:0007582 GO:0032729 positive regulation of interferon-gamma production biological_process GO:0007582 GO:0032730 positive regulation of interleukin-1 alpha production biological_process GO:0007582 GO:0032731 positive regulation of interleukin-1 beta production biological_process GO:0007582 GO:0032732 positive regulation of interleukin-1 production biological_process GO:0007582 GO:0032733 positive regulation of interleukin-10 production biological_process GO:0007582 GO:0032734 positive regulation of interleukin-11 production biological_process GO:0007582 GO:0032735 positive regulation of interleukin-12 production biological_process GO:0007582 GO:0032736 positive regulation of interleukin-13 production biological_process GO:0007582 GO:0032737 positive regulation of interleukin-14 production biological_process GO:0007582 GO:0032738 positive regulation of interleukin-15 production biological_process GO:0007582 GO:0032739 positive regulation of interleukin-16 production biological_process GO:0007582 GO:0032740 positive regulation of interleukin-17 production biological_process GO:0007582 GO:0032741 positive regulation of interleukin-18 production biological_process GO:0007582 GO:0032742 positive regulation of interleukin-19 production biological_process GO:0007582 GO:0032743 positive regulation of interleukin-2 production biological_process GO:0007582 GO:0032744 positive regulation of interleukin-20 production biological_process GO:0007582 GO:0032745 positive regulation of interleukin-21 production biological_process GO:0007582 GO:0032746 positive regulation of interleukin-22 production biological_process GO:0007582 GO:0032747 positive regulation of interleukin-23 production biological_process GO:0007582 GO:0032748 positive regulation of interleukin-24 production biological_process GO:0007582 GO:0032749 positive regulation of interleukin-25 production biological_process GO:0007582 GO:0032750 positive regulation of interleukin-26 production biological_process GO:0007582 GO:0032751 positive regulation of interleukin-27 production biological_process GO:0007582 GO:0032752 positive regulation of interleukin-3 production biological_process GO:0007582 GO:0032753 positive regulation of interleukin-4 production biological_process GO:0007582 GO:0032754 positive regulation of interleukin-5 production biological_process GO:0007582 GO:0032755 positive regulation of interleukin-6 production biological_process GO:0007582 GO:0032756 positive regulation of interleukin-7 production biological_process GO:0007582 GO:0032757 positive regulation of interleukin-8 production biological_process GO:0007582 GO:0032758 positive regulation of interleukin-9 production biological_process GO:0007582 GO:0032759 positive regulation of TRAIL production biological_process GO:0007582 GO:0032760 positive regulation of tumor necrosis factor-alpha production biological_process GO:0007582 GO:0032761 positive regulation of tumor necrosis factor-beta production biological_process GO:0007582 GO:0032762 mast cell cytokine production biological_process GO:0007582 GO:0032763 regulation of mast cytokine production biological_process GO:0007582, GO:0050789 GO:0032764 negative regulation of mast cytokine production biological_process GO:0007582, GO:0050789 GO:0032765 positive regulation of mast cytokine production biological_process GO:0007582, GO:0050789 GO:0032766 NHE3/E3KARP/ACTN4 complex cellular_component GO:0005623, GO:0043234 GO:0032767 copper-dependent protein binding molecular_function GO:0005515 GO:0032768 regulation of monooxygenase activity biological_process GO:0050789 GO:0032769 negative regulation of monooxygenase activity biological_process GO:0050789 GO:0032770 positive regulation of monooxygenase activity biological_process GO:0050789 GO:0032771 regulation of monophenol oxygenase activity biological_process GO:0050789 GO:0032772 negative regulation of monophenol oxygenase activity biological_process GO:0050789 GO:0032773 positive regulation of monophenol oxygenase activity biological_process GO:0050789 GO:0032774 RNA biosynthesis biological_process GO:0006139 GO:0032775 DNA methylation on adenine biological_process GO:0006259, GO:0040029 GO:0032776 DNA methylation on cytosine biological_process GO:0006259, GO:0040029 GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component GO:0005654, GO:0043234 GO:0032778 cobalt-transporting ATPase activity molecular_function GO:0005215, GO:0016787 GO:0032779 copper-induced intracellular protein transport biological_process GO:0015031, GO:0016043 GO:0032780 negative regulation of ATPase activity biological_process GO:0050789 GO:0032781 positive regulation of ATPase activity biological_process GO:0050789 GO:0032782 bile acid secretion biological_process GO:0007582 GO:0032783 ELL-EAF complex cellular_component GO:0005654, GO:0043234 GO:0060013 righting reflex biological_process GO:0009605 GO:0060014 granulosa cell differentiation biological_process GO:0007275, GO:0030154 GO:0060015 granulosa cell fate commitment biological_process GO:0030154 GO:0060016 granulosa cell development biological_process GO:0030154 GO:0060017 parathyroid gland development biological_process GO:0007275 GO:0060018 astrocyte fate commitment biological_process GO:0030154 GO:0060019 radial glial cell differentiation biological_process GO:0007275, GO:0030154 GO:0060020 Bergmann glial cell differentiation biological_process GO:0007275, GO:0030154 Obsoletions =========== GO:0006299, short patch mismatch repair system: 'short patch' is a relative statements, often used ambiguously, and does not necessarily represent a process; te processes it can stand for are base excision repair, nucleotide excision repair, transcription-coupled nucleotide excision repair, and mismatch repair. To update annotations, consider the biological process terms 'base excision repair ; GO:0006284' and 'nucleotide excision repair ; GO:0006289'. Term merges =========== GO:0006300 was merged into GO:0006298, mismatch repair Term name changes ================= GO:0002237: response to bacterium associated molecule --> response to molecule of bacterial origin GO:0002238: response to fungus associated molecule --> response to molecule of fungal origin GO:0002240: response to oomycetes associated molecule --> response to molecule of oomycetes origin GO:0021861: radial glial cell differentiation --> radial glial cell differentiation in the forebrain GO:0021865: symmetric radial glial cell division --> symmetric radial glial cell division in the forebrain GO:0022023: radial glial cell fate commitment --> radial glial cell fate commitment in the forebrain GO:0035267: TIP60 histone acetyltransferase complex --> NuA4 histone acetyltransferase complex Subset Changes ============== Subset term alterations None Term movement between subsets Term movements under GO:0005215, transporter activity + GO:0032778, cobalt-transporting ATPase activity Term movements under GO:0005488, binding + GO:0032500, muramyl dipeptide binding Term movements under GO:0005515, protein binding + GO:0010313, phytochrome binding + GO:0032767, copper-dependent protein binding Term movements under GO:0005575, cellular_component + GO:0010319, stromule Term movements under GO:0005622, intracellular + GO:0008043, ferritin complex Term movements under GO:0005623, cell + GO:0032766, NHE3/E3KARP/ACTN4 complex Term movements under GO:0005654, nucleoplasm + GO:0000508, Rpd3L complex + GO:0000509, Rpd3S complex + GO:0032777, Piccolo NuA4 histone acetyltransferase complex + GO:0032783, ELL-EAF complex Term movements under GO:0005941, unlocalized protein complex - GO:0008043, ferritin complex Term movements under GO:0006139, nucleobase, nucleoside, nucleotide and nucleic acid metabolism + GO:0032774, RNA biosynthesis + GO:0006269, DNA replication, synthesis of RNA primer + GO:0043137, DNA replication, removal of RNA primer Term movements under GO:0006259, DNA metabolism - GO:0006300, alt id for GO:0006298, mismatch repair - GO:0006299, short patch mismatch repair system + GO:0032776, DNA methylation on cytosine + GO:0032775, DNA methylation on adenine Term movements under GO:0006629, lipid metabolism + GO:0010323, negative regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway + GO:0010322, regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway Term movements under GO:0006810, transport + GO:0010315, auxin efflux Term movements under GO:0006950, response to stress - GO:0006300, alt id for GO:0006298, mismatch repair - GO:0006299, short patch mismatch repair system Term movements under GO:0007165, signal transduction + GO:0032317, regulation of Rap GTPase activity + GO:0032484, Ral protein signal transduction + GO:0032316, regulation of Ran GTPase activity + GO:0043088, regulation of Cdc42 GTPase activity + GO:0032485, regulation of Ral protein signal transduction + GO:0032482, Rab protein signal transduction + GO:0032315, regulation of Ral GTPase activity + GO:0032312, regulation of ARF GTPase activity + GO:0032318, regulation of Ras GTPase activity + GO:0032488, Cdc42 protein signal transduction + GO:0032483, regulation of Rab protein signal transduction + GO:0032487, regulation of Rap protein signal transduction + GO:0032319, regulation of Rho GTPase activity + GO:0032320, positive regulation of Ras GTPase activity + GO:0032313, regulation of Rab GTPase activity + GO:0032314, regulation of Rac GTPase activity + GO:0032489, regulation of Cdc42 protein signal transduction + GO:0032321, positive regulation of Rho GTPase activity + GO:0043089, positive regulation of Cdc42 GTPase activity + GO:0032486, Rap protein signal transduction Term movements under GO:0007275, development - GO:0021896, forebrain astrocyte differentiation - GO:0032474, otolith morphogenesis - GO:0032475, otolith formation + GO:0060014, granulosa cell differentiation + GO:0010321, regulation of vegetative phase change + GO:0060017, parathyroid gland development + GO:0060019, radial glial cell differentiation + GO:0060020, Bergmann glial cell differentiation Term movements under GO:0007582, physiological process + GO:0032481, positive regulation of interferon type I production + GO:0032762, mast cell cytokine production + GO:0032696, negative regulation of interleukin-13 production + GO:0032680, regulation of tumor necrosis factor-alpha production + GO:0032656, regulation of interleukin-13 production + GO:0032647, regulation of interferon-alpha production + GO:0032651, regulation of interleukin-1 beta production + GO:0032760, positive regulation of tumor necrosis factor-alpha production + GO:0032615, interleukin-12 production + GO:0032679, regulation of TRAIL production + GO:0032709, negative regulation of interleukin-25 production + GO:0032754, positive regulation of interleukin-5 production + GO:0032654, regulation of interleukin-11 production + GO:0032732, positive regulation of interleukin-1 production + GO:0032738, positive regulation of interleukin-15 production + GO:0032673, regulation of interleukin-4 production + GO:0032625, interleukin-21 production + GO:0032609, interferon-gamma production + GO:0032670, regulation of interleukin-26 production + GO:0032662, regulation of interleukin-19 production + GO:0032745, positive regulation of interleukin-21 production + GO:0032704, negative regulation of interleukin-20 production + GO:0032733, positive regulation of interleukin-10 production + GO:0032607, interferon-alpha production + GO:0032492, detection of molecule of oomycetes origin + GO:0032618, interleukin-15 production + GO:0032611, interleukin-1 beta production + GO:0032692, negative regulation of interleukin-1 production + GO:0032669, regulation of interleukin-25 production + GO:0032665, regulation of interleukin-21 production + GO:0032690, negative regulation of interleukin-1 alpha production + GO:0032747, positive regulation of interleukin-23 production + GO:0032713, negative regulation of interleukin-4 production + GO:0032765, positive regulation of mast cytokine production + GO:0032700, negative regulation of interleukin-17 production + GO:0032621, interleukin-18 production + GO:0032723, positive regulation of connective tissue growth factor production + GO:0032499, detection of peptidoglycan + GO:0032706, negative regulation of interleukin-22 production + GO:0032724, positive regulation of fractalkine production + GO:0032736, positive regulation of interleukin-13 production + GO:0032633, interleukin-4 production + GO:0032697, negative regulation of interleukin-14 production + GO:0032758, positive regulation of interleukin-9 production + GO:0032677, regulation of interleukin-8 production + GO:0032606, interferon type I production + GO:0032657, regulation of interleukin-14 production + GO:0032710, negative regulation of interleukin-26 production + GO:0032740, positive regulation of interleukin-17 production + GO:0032685, negative regulation of granulocyte macrophage colony-stimulating factor production + GO:0032749, positive regulation of interleukin-25 production + GO:0032646, regulation of hepatocyte growth factor production + GO:0032687, negative regulation of interferon-alpha production + GO:0032729, positive regulation of interferon-gamma production + GO:0032684, negative regulation of fractalkine production + GO:0032731, positive regulation of interleukin-1 beta production + GO:0032699, negative regulation of interleukin-16 production + GO:0032490, detection of molecule of bacterial origin + GO:0032638, interleukin-9 production + GO:0032714, negative regulation of interleukin-5 production + GO:0032631, interleukin-27 production + GO:0032725, positive regulation of granulocyte macrophage colony-stimulating factor production + GO:0032602, chemokine production + GO:0032764, negative regulation of mast cytokine production + GO:0032717, negative regulation of interleukin-8 production + GO:0032622, interleukin-19 production + GO:0032752, positive regulation of interleukin-3 production + GO:0032612, interleukin-1 production + GO:0032759, positive regulation of TRAIL production + GO:0032734, positive regulation of interleukin-11 production + GO:0032648, regulation of interferon-beta production + GO:0032720, negative regulation of tumor necrosis factor-alpha production + GO:0032498, detection of muramyl dipeptide + GO:0032675, regulation of interleukin-6 production + GO:0032604, granulocyte macrophage colony-stimulating factor production + GO:0032743, positive regulation of interleukin-2 production + GO:0032610, interleukin-1 alpha production + GO:0032632, interleukin-3 production + GO:0032636, interleukin-7 production + GO:0032623, interleukin-2 production + GO:0032698, negative regulation of interleukin-15 production + GO:0032658, regulation of interleukin-15 production + GO:0032628, interleukin-24 production + GO:0032756, positive regulation of interleukin-7 production + GO:0032641, tumor necrosis factor-beta production + GO:0032727, positive regulation of interferon-alpha production + GO:0032694, negative regulation of interleukin-11 production + GO:0032616, interleukin-13 production + GO:0032664, regulation of interleukin-20 production + GO:0032667, regulation of interleukin-23 production + GO:0032643, regulation of connective tissue growth factor production + GO:0032689, negative regulation of interferon-gamma production + GO:0032705, negative regulation of interleukin-21 production + GO:0032634, interleukin-5 production + GO:0032619, interleukin-16 production + GO:0032624, interleukin-20 production + GO:0032715, negative regulation of interleukin-6 production + GO:0032666, regulation of interleukin-22 production + GO:0032711, negative regulation of interleukin-27 production + GO:0032753, positive regulation of interleukin-4 production + GO:0032708, negative regulation of interleukin-24 production + GO:0032639, TRAIL production + GO:0032640, tumor necrosis factor-alpha production + GO:0032721, negative regulation of tumor necrosis factor-beta production + GO:0032674, regulation of interleukin-5 production + GO:0032614, interleukin-11 production + GO:0032642, regulation of chemokine production + GO:0032763, regulation of mast cytokine production + GO:0032750, positive regulation of interleukin-26 production + GO:0032739, positive regulation of interleukin-16 production + GO:0032661, regulation of interleukin-18 production + GO:0032671, regulation of interleukin-27 production + GO:0032693, negative regulation of interleukin-10 production + GO:0032695, negative regulation of interleukin-12 production + GO:0032701, negative regulation of interleukin-18 production + GO:0032746, positive regulation of interleukin-22 production + GO:0032718, negative regulation of interleukin-9 production + GO:0032703, negative regulation of interleukin-2 production + GO:0032637, interleukin-8 production + GO:0032613, interleukin-10 production + GO:0032761, positive regulation of tumor necrosis factor-beta production + GO:0010315, auxin efflux + GO:0032620, interleukin-17 production + GO:0032707, negative regulation of interleukin-23 production + GO:0032682, negative regulation of chemokine production + GO:0032626, interleukin-22 production + GO:0032712, negative regulation of interleukin-3 production + GO:0032630, interleukin-26 production + GO:0032722, positive regulation of chemokine production + GO:0032650, regulation of interleukin-1 alpha production + GO:0032479, regulation of interferon type I production + GO:0032659, regulation of interleukin-16 production + GO:0032691, negative regulation of interleukin-1 beta production + GO:0032672, regulation of interleukin-3 production + GO:0032603, fractalkine production + GO:0032617, interleukin-14 production + GO:0032678, regulation of interleukin-9 production + GO:0032681, regulation of tumor necrosis factor-beta production + GO:0032782, bile acid secretion + GO:0032676, regulation of interleukin-7 production + GO:0032497, detection of lipopolysaccharide + GO:0032702, negative regulation of interleukin-19 production + GO:0032757, positive regulation of interleukin-8 production + GO:0032686, negative regulation of hepatocyte growth factor production + GO:0032627, interleukin-23 production + GO:0032629, interleukin-25 production + GO:0032605, hepatocyte growth factor production + GO:0032652, regulation of interleukin-1 production + GO:0032649, regulation of interferon-gamma production + GO:0032755, positive regulation of interleukin-6 production + GO:0032726, positive regulation of hepatocyte growth factor production + GO:0032645, regulation of granulocyte macrophage colony-stimulating factor production + GO:0032491, detection of molecule of fungal origin + GO:0032730, positive regulation of interleukin-1 alpha production + GO:0032744, positive regulation of interleukin-20 production + GO:0032741, positive regulation of interleukin-18 production + GO:0032735, positive regulation of interleukin-12 production + GO:0032668, regulation of interleukin-24 production + GO:0032601, connective tissue growth factor production + GO:0032748, positive regulation of interleukin-24 production + GO:0032660, regulation of interleukin-17 production + GO:0032644, regulation of fractalkine production + GO:0032716, negative regulation of interleukin-7 production + GO:0032751, positive regulation of interleukin-27 production + GO:0032653, regulation of interleukin-10 production + GO:0032719, negative regulation of TRAIL production + GO:0032728, positive regulation of interferon-beta production + GO:0032663, regulation of interleukin-2 production + GO:0032635, interleukin-6 production + GO:0032737, positive regulation of interleukin-14 production + GO:0032683, negative regulation of connective tissue growth factor production + GO:0032608, interferon-beta production + GO:0032742, positive regulation of interleukin-19 production + GO:0032480, negative regulation of interferon type I production + GO:0032655, regulation of interleukin-12 production + GO:0032688, negative regulation of interferon-beta production Term movements under GO:0008233, peptidase activity + GO:0010320, arginine/lysine endopeptidase activity Term movements under GO:0008289, lipid binding + GO:0010314, phosphatidylinositol-5-phosphate binding Term movements under GO:0009056, catabolism + GO:0043137, DNA replication, removal of RNA primer Term movements under GO:0009058, biosynthesis + GO:0010323, negative regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway + GO:0010322, regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway Term movements under GO:0009536, plastid + GO:0010319, stromule Term movements under GO:0009605, response to external stimulus + GO:0060013, righting reflex Term movements under GO:0009607, response to biotic stimulus + GO:0032494, response to peptidoglycan + GO:0032491, detection of molecule of fungal origin + GO:0032497, detection of lipopolysaccharide + GO:0032495, response to muramyl dipeptide + GO:0032490, detection of molecule of bacterial origin + GO:0032496, response to lipopolysaccharide + GO:0032492, detection of molecule of oomycetes origin + GO:0032498, detection of muramyl dipeptide + GO:0032493, response to bacterial lipoprotein + GO:0032499, detection of peptidoglycan Term movements under GO:0009653, morphogenesis + GO:0032474, otolith morphogenesis + GO:0032475, otolith formation Term movements under GO:0009719, response to endogenous stimulus - GO:0006300, alt id for GO:0006298, mismatch repair - GO:0006299, short patch mismatch repair system Term movements under GO:0009790, embryonic development + GO:0032474, otolith morphogenesis + GO:0032475, otolith formation Term movements under GO:0015031, protein transport + GO:0032779, copper-induced intracellular protein transport Term movements under GO:0016043, cell organization and biogenesis + GO:0032779, copper-induced intracellular protein transport Term movements under GO:0016740, transferase activity + GO:0000507, 1-acylglycerophosphocholine O-acyltransferase Term movements under GO:0016787, hydrolase activity + GO:0032778, cobalt-transporting ATPase activity Term movements under GO:0030154, cell differentiation + GO:0060014, granulosa cell differentiation + GO:0060016, granulosa cell development + GO:0002265, astrocyte activation during immune response + GO:0060015, granulosa cell fate commitment + GO:0060019, radial glial cell differentiation + GO:0060020, Bergmann glial cell differentiation + GO:0060018, astrocyte fate commitment + GO:0048143, astrocyte activation Term movements under GO:0040029, regulation of gene expression, epigenetic + GO:0032776, DNA methylation on cytosine + GO:0032775, DNA methylation on adenine Term movements under GO:0043234, protein complex + GO:0032766, NHE3/E3KARP/ACTN4 complex + GO:0032777, Piccolo NuA4 histone acetyltransferase complex + GO:0000509, Rpd3S complex + GO:0010317, pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex + GO:0032783, ELL-EAF complex + GO:0000508, Rpd3L complex + GO:0010318, pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex + GO:0010316, pyrophosphate-dependent phosphofructokinase complex + GO:0008043, ferritin complex Term movements under GO:0050789, regulation of biological process + GO:0032772, negative regulation of monophenol oxygenase activity + GO:0010323, negative regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway + GO:0010321, regulation of vegetative phase change + GO:0032769, negative regulation of monooxygenase activity + GO:0032485, regulation of Ral protein signal transduction + GO:0032780, negative regulation of ATPase activity + GO:0032773, positive regulation of monophenol oxygenase activity + GO:0010322, regulation of isopentenyl diphosphate biosynthesis, mevalonate-independent pathway + GO:0032483, regulation of Rab protein signal transduction + GO:0032487, regulation of Rap protein signal transduction + GO:0032768, regulation of monooxygenase activity + GO:0032763, regulation of mast cytokine production + GO:0032770, positive regulation of monooxygenase activity + GO:0032765, positive regulation of mast cytokine production + GO:0032781, positive regulation of ATPase activity + GO:0032764, negative regulation of mast cytokine production + GO:0032771, regulation of monophenol oxygenase activity + GO:0032489, regulation of Cdc42 protein signal transduction Term changes ============ KEY: '+' : added, '-' : removed, '*' : changed GO:0001772, immunological synapse +2 synonym(s) GO:0002237, response to molecule of bacterial origin *name; *def; +1 synonym(s) GO:0002238, response to molecule of fungal origin *name; *def; +1 synonym(s) GO:0002240, response to molecule of oomycetes origin *name; *def; +1 synonym(s) GO:0005524, ATP binding +1 synonym(s) GO:0006269, DNA replication, synthesis of RNA primer +1 is_a(s) GO:0006298, mismatch repair +1 alt_id(s); +3 synonym(s) GO:0006299, short patch mismatch repair system *def; +comment; +is_obsolete GO:0007265, Ras protein signal transduction *def GO:0007339, binding of sperm to zona pellucida +1 synonym(s) GO:0007435, salivary gland morphogenesis *def GO:0010293, abscisic aldehyde oxidase activity *def GO:0010296, prenylcysteine methylesterase activity *def GO:0010309, acireductone dioxygenase (Fe2+-requiring) activity *def GO:0010312, detoxification of zinc ion *def GO:0015010, tetrahydrocorphin metabolism *def GO:0015011, nickel-tetrapyrrole coenzyme metabolism +def GO:0016295, myristoyl-[acyl-carrier-protein] hydrolase activity *def GO:0017146, N-methyl-D-aspartate selective glutamate receptor complex *1 synonym(s) GO:0021861, radial glial cell differentiation in the forebrain *name GO:0021865, symmetric radial glial cell division in the forebrain *name; *def GO:0022023, radial glial cell fate commitment in the forebrain *name; *def; +1 relationship(s) GO:0032312, regulation of ARF GTPase activity +1 relationship(s) GO:0032313, regulation of Rab GTPase activity +1 relationship(s) GO:0032314, regulation of Rac GTPase activity +1 relationship(s) GO:0032315, regulation of Ral GTPase activity +1 relationship(s) GO:0032316, regulation of Ran GTPase activity +1 relationship(s) GO:0032317, regulation of Rap GTPase activity +1 relationship(s) GO:0032318, regulation of Ras GTPase activity +1 relationship(s) GO:0032319, regulation of Rho GTPase activity +1 relationship(s) GO:0032446, protein modification by small protein conjugation *def GO:0032474, otolith morphogenesis +1 is_a(s) GO:0032475, otolith formation +1 is_a(s) GO:0035267, NuA4 histone acetyltransferase complex *name; *def; +1 synonym(s) GO:0042033, chemokine biosynthesis +1 relationship(s) GO:0042090, interleukin-12 biosynthesis +1 relationship(s) GO:0042091, interleukin-10 biosynthesis +1 relationship(s) GO:0042094, interleukin-2 biosynthesis +1 relationship(s) GO:0042095, interferon-gamma biosynthesis +1 relationship(s) GO:0042097, interleukin-4 biosynthesis +1 relationship(s) GO:0042109, tumor necrosis factor-beta biosynthesis +1 relationship(s) GO:0042222, interleukin-1 biosynthesis +1 relationship(s) GO:0042223, interleukin-3 biosynthesis +1 relationship(s) GO:0042225, interleukin-5 biosynthesis +1 relationship(s) GO:0042226, interleukin-6 biosynthesis +1 relationship(s) GO:0042227, interleukin-7 biosynthesis +1 relationship(s) GO:0042228, interleukin-8 biosynthesis +1 relationship(s) GO:0042229, interleukin-9 biosynthesis +1 relationship(s) GO:0042230, interleukin-11 biosynthesis +1 relationship(s) GO:0042231, interleukin-13 biosynthesis +1 relationship(s) GO:0042232, interleukin-14 biosynthesis +1 relationship(s) GO:0042233, interleukin-15 biosynthesis +1 relationship(s) GO:0042234, interleukin-16 biosynthesis +1 relationship(s) GO:0042235, interleukin-17 biosynthesis +1 relationship(s) GO:0042236, interleukin-19 biosynthesis +1 relationship(s) GO:0042237, interleukin-20 biosynthesis +1 relationship(s) GO:0042238, interleukin-21 biosynthesis +1 relationship(s) GO:0042239, interleukin-22 biosynthesis +1 relationship(s) GO:0042240, interleukin-23 biosynthesis +1 relationship(s) GO:0042241, interleukin-18 biosynthesis +1 relationship(s) GO:0042253, granulocyte macrophage colony-stimulating factor biosynthesis +1 relationship(s) GO:0042269, regulation of natural killer cell mediated cytotoxicity *1 synonym(s) GO:0042331, phototaxis *1 synonym(s) GO:0042332, gravitaxis *1 synonym(s) GO:0042533, tumor necrosis factor-alpha biosynthesis +1 relationship(s) GO:0042834, peptidoglycan binding *def GO:0043088, regulation of Cdc42 GTPase activity +1 relationship(s) GO:0043137, DNA replication, removal of RNA primer +1 is_a(s) GO:0043189, H4/H2A histone acetyltransferase complex *def; -1 synonym(s) GO:0045189, connective tissue growth factor biosynthesis +1 synonym(s); +1 relationship(s) GO:0045349, interferon-alpha biosynthesis +1 relationship(s) GO:0045350, interferon-beta biosynthesis +1 relationship(s) GO:0045351, interferon type I biosynthesis +1 relationship(s) GO:0045524, interleukin-24 biosynthesis +1 relationship(s) GO:0045525, interleukin-25 biosynthesis +1 relationship(s) GO:0045526, interleukin-26 biosynthesis +1 relationship(s) GO:0045527, interleukin-27 biosynthesis +1 relationship(s) GO:0045553, TRAIL biosynthesis +1 relationship(s) GO:0046536, dosage compensation complex *def GO:0046956, positive phototaxis *1 synonym(s) GO:0046957, negative phototaxis *1 synonym(s) GO:0048060, negative gravitaxis *1 synonym(s) GO:0048061, positive gravitaxis *1 synonym(s) GO:0048143, astrocyte activation +1 relationship(s) GO:0048175, hepatocyte growth factor biosynthesis +1 relationship(s) GO:0048898, anterior lateral line system development *1 synonym(s) GO:0050719, interleukin-1 alpha biosynthesis +1 relationship(s) GO:0050751, fractalkine biosynthesis +1 relationship(s) File Stats (for the new file) ========== biological_process: 12904 terms (12698 defined; 349 obsolete) cellular_component: 1976 terms (1921 defined; 128 obsolete) molecular_function: 8049 terms (7465 defined; 535 obsolete) totals: 22929 terms (22084/96.3% defined; 1012/4.4% obsolete)