! parsing: GO:0000041 ! parse: GO:0000041 using "transition metal ion transport" => cdef(GO:0030001, [OBO_REL:results_in_transport_of=SO:1000009]) [-2] ! no existing xp def ! def: "The directed movement of transition metal ions into, out of, within or between cells. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver." ! PROPOSED: metal ion transport that OBO_REL:results_in_transport_of transition [cdef(GO:0030001, [OBO_REL:results_in_transport_of=SO:1000009])] [Term] id: GO:0000041 ! transition metal ion transport intersection_of: GO:0030001 ! metal ion transport intersection_of: OBO_REL:results_in_transport_of SO:1000009 ! transition ! seconds spent parsing GO:0000041: 6.11 ! parsing: GO:0000154 ! parse: GO:0000154 using "rRNA editing" => cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(CHEBI:36976, [OBO_REL:part_of=SO:0000252])]) [-3] ! parse: GO:0000154 using "rRNA modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000252]) [-2] ! no existing xp def ! def: "The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to rRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000252])] [Term] id: GO:0000154 ! rRNA modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000252 ! rRNA synonym: "ribosomal RNA modification" EXACT [OBOL:automatic] synonym: "ribosomal RNA processing" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid modification" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0000154: 3.14 ! parsing: GO:0000173 ! No parse for: GO:0000173 inactivation of MAPK activity during osmolarity sensing ! parsing: GO:0000184 ! No parse for: GO:0000184 mRNA catabolic process, nonsense-mediated decay ! parsing: GO:0000185 ! No parse for: GO:0000185 activation of MAPKKK activity ! parsing: GO:0000186 ! No parse for: GO:0000186 activation of MAPKK activity ! parsing: GO:0000188 ! No parse for: GO:0000188 inactivation of MAPK activity ! parsing: GO:0000200 ! No parse for: GO:0000200 inactivation of MAPK activity during cell wall biogenesis ! parsing: GO:0000244 ! No parse for: GO:0000244 assembly of spliceosomal tri-snRNP ! parsing: GO:0000270 ! parse: GO:0000270 using "peptidoglycan metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:8005]) [-2] ! parse: GO:0000270 using "peptidoglycan metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:8005]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving peptidoglycans, any of a class of glycoconjugates found only in bacterial cell walls and consisting of strands of glycosaminoglycan cross-linked by oligopeptides to form a huge and rigid network." ! PROPOSED: metabolic process that OBO_REL:has_participant peptidoglycan [cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:8005])] [Term] id: GO:0000270 ! peptidoglycan metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant CHEBI:8005 ! peptidoglycan synonym: "Peptidoglycan metabolic process" EXACT [OBOL:automatic] synonym: "Peptidoglycan metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0000270: 6.42 ! parsing: GO:0000288 ! No parse for: GO:0000288 mRNA catabolic process, deadenylation-dependent decay ! parsing: GO:0000289 ! No parse for: GO:0000289 poly(A) tail shortening ! parsing: GO:0000291 ! No parse for: GO:0000291 mRNA catabolic process, exonucleolytic ! parsing: GO:0000294 ! No parse for: GO:0000294 mRNA catabolic process, endonucleolytic cleavage-dependent decay ! parsing: GO:0000336 ! No parse for: GO:0000336 positive regulation of transposition, DNA-mediated ! parsing: GO:0000349 ! No parse for: GO:0000349 generation of catalytic spliceosome for first transesterification step ! parsing: GO:0000350 ! No parse for: GO:0000350 generation of catalytic spliceosome for second transesterification step ! parsing: GO:0000351 ! No parse for: GO:0000351 assembly of spliceosomal tri-snRNP U4/U6.U5 ! parsing: GO:0000355 ! No parse for: GO:0000355 assembly of spliceosomal tri-snRNP U4atac/U6atac.U5 ! parsing: GO:0000372 ! No parse for: GO:0000372 Group I intron splicing ! parsing: GO:0000373 ! No parse for: GO:0000373 Group II intron splicing ! parsing: GO:0000374 ! No parse for: GO:0000374 Group III intron splicing ! parsing: GO:0000379 ! No parse for: GO:0000379 tRNA-type intron splice site recognition and cleavage ! parsing: GO:0000380 ! No parse for: GO:0000380 alternative nuclear mRNA splicing, via spliceosome ! parsing: GO:0000381 ! No parse for: GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome ! parsing: GO:0000394 ! No parse for: GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation ! parsing: GO:0000398 ! No parse for: GO:0000398 nuclear mRNA splicing, via spliceosome ! parsing: GO:0000411 ! parse: GO:0000411 using "positive regulation of transcription by galactose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000411 using "up regulation of transcription by galactose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000411 using "up-regulation of transcription by galactose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000411 using "upregulation of transcription by galactose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! no existing xp def ! def: "Any process involving galactose that activates or increases the rate of transcription." ! PROPOSED: positive regulation of transcription that OBO_REL:mediated_by galactose [cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:28260])] [Term] id: GO:0000411 ! positive regulation of transcription by galactose intersection_of: GO:0045941 ! positive regulation of transcription intersection_of: OBO_REL:mediated_by CHEBI:28260 ! galactose synonym: "Galactose mediated positive regulation of transcription" EXACT [OBOL:automatic] synonym: "Galactose mediated up regulation of transcription" EXACT [OBOL:automatic] synonym: "Galactose mediated up-regulation of transcription" EXACT [OBOL:automatic] synonym: "Galactose mediated upregulation of transcription" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated positive regulation of transcription" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated up regulation of transcription" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated up-regulation of transcription" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated upregulation of transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0000411: 7.43 ! parsing: GO:0000416 ! No parse for: GO:0000416 positive regulation of histone H3-K36 methylation ! parsing: GO:0000432 ! parse: GO:0000432 using "positive regulation of transcription from RNA polymerase II promoter by glucose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0000432 using "up regulation of transcription from RNA polymerase II promoter by glucose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0000432 using "up-regulation of transcription from RNA polymerase II promoter by glucose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0000432 using "upregulation of transcription from RNA polymerase II promoter by glucose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! no existing xp def ! def: "Any process involving glucose that activates or increases the rate of transcription from an RNA polymerase II promoter." ! PROPOSED: positive regulation of transcription from RNA polymerase II promoter that OBO_REL:mediated_by glucose [cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:17234])] [Term] id: GO:0000432 ! positive regulation of transcription from RNA polymerase II promoter by glucose intersection_of: GO:0045944 ! positive regulation of transcription from RNA polymerase II promoter intersection_of: OBO_REL:mediated_by CHEBI:17234 ! glucose synonym: "Glucose mediated positive regulation of transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "Glucose mediated positive regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Glucose mediated up regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Glucose mediated up-regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Glucose mediated upregulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated positive regulation of transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated positive regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated up regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated up-regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated upregulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0000432: 10.94 ! parsing: GO:0000435 ! parse: GO:0000435 using "positive regulation of transcription from RNA polymerase II promoter by galactose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000435 using "up regulation of transcription from RNA polymerase II promoter by galactose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000435 using "up-regulation of transcription from RNA polymerase II promoter by galactose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! parse: GO:0000435 using "upregulation of transcription from RNA polymerase II promoter by galactose" => cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:28260]) [-2] ! no existing xp def ! def: "Any process involving galactose that activates or increases the rate of transcription from an RNA polymerase II promoter." ! PROPOSED: positive regulation of transcription from RNA polymerase II promoter that OBO_REL:mediated_by galactose [cdef(GO:0045944, [OBO_REL:mediated_by=CHEBI:28260])] [Term] id: GO:0000435 ! positive regulation of transcription from RNA polymerase II promoter by galactose intersection_of: GO:0045944 ! positive regulation of transcription from RNA polymerase II promoter intersection_of: OBO_REL:mediated_by CHEBI:28260 ! galactose synonym: "Galactose mediated positive regulation of transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "Galactose mediated positive regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Galactose mediated up regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Galactose mediated up-regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "Galactose mediated upregulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated positive regulation of transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated positive regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated up regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated up-regulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] synonym: "galacto-hexose mediated upregulation of transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0000435: 10.4 ! parsing: GO:0000436 ! No parse for: GO:0000436 positive regulation of transcription from RNA polymerase II promoter by carbon catabolites ! parsing: GO:0000451 ! No parse for: GO:0000451 rRNA 2'-O-methylation ! parsing: GO:0000452 ! No parse for: GO:0000452 snoRNA guided rRNA 2'-O-methylation ! parsing: GO:0000454 ! No parse for: GO:0000454 snoRNA guided rRNA pseudouridine synthesis ! parsing: GO:0000459 ! No parse for: GO:0000459 exonucleolytic trimming during rRNA processing ! parsing: GO:0000465 ! No parse for: GO:0000465 exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ! parsing: GO:0000467 ! No parse for: GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ! parsing: GO:0000468 ! No parse for: GO:0000468 generation of mature 3'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ! parsing: GO:0000477 ! No parse for: GO:0000477 generation of mature 5'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ! parsing: GO:0000494 ! No parse for: GO:0000494 box C/D snoRNA 3'-end processing ! parsing: GO:0000495 ! No parse for: GO:0000495 box H/ACA snoRNA 3'-end processing ! parsing: GO:0000712 ! No parse for: GO:0000712 resolution of meiotic joint molecules as recombinants ! parsing: GO:0000716 ! No parse for: GO:0000716 transcription-coupled nucleotide-excision repair, DNA damage recognition ! parsing: GO:0000722 ! No parse for: GO:0000722 telomere maintenance via recombination ! parsing: GO:0000723 ! No parse for: GO:0000723 telomere maintenance ! parsing: GO:0000724 ! No parse for: GO:0000724 double-strand break repair via homologous recombination ! parsing: GO:0000728 ! No parse for: GO:0000728 gene conversion at mating-type locus, DNA double-strand break formation ! parsing: GO:0000732 ! No parse for: GO:0000732 strand displacement ! parsing: GO:0000734 ! No parse for: GO:0000734 gene conversion at mating-type locus, DNA repair synthesis ! parsing: GO:0000738 ! No parse for: GO:0000738 DNA catabolic process, exonucleolytic ! parsing: GO:0000750 ! parse: GO:0000750 using "pheromone-dependent signal transduction during conjugation with cellular fusion" => cdef(GO:0032005, [OBO_REL:dependent_on=CHEBI:26013]) [-2] ! no existing xp def ! def: "A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion." ! PROPOSED: signal transduction during conjugation with cellular fusion that OBO_REL:dependent_on pheromone [cdef(GO:0032005, [OBO_REL:dependent_on=CHEBI:26013])] [Term] id: GO:0000750 ! pheromone-dependent signal transduction during conjugation with cellular fusion intersection_of: GO:0032005 ! signal transduction during conjugation with cellular fusion intersection_of: OBO_REL:dependent_on CHEBI:26013 ! pheromone ! seconds spent parsing GO:0000750: 2.62 ! parsing: GO:0000757 ! No parse for: GO:0000757 signal transduction during conjugation without cellular fusion ! parsing: GO:0000770 ! No parse for: GO:0000770 peptide pheromone export ! parsing: GO:0000902 ! No parse for: GO:0000902 cell morphogenesis ! parsing: GO:0000947 ! No parse for: GO:0000947 amino acid catabolic process to alcohol via Ehrlich pathway ! parsing: GO:0000948 ! No parse for: GO:0000948 amino acid catabolic process to carboxylic acid via Ehrlich pathway ! parsing: GO:0000955 ! No parse for: GO:0000955 amino acid catabolic process via Ehrlich pathway ! parsing: GO:0001402 ! No parse for: GO:0001402 signal transduction during filamentous growth ! parsing: GO:0001519 ! No parse for: GO:0001519 peptide amidation ! parsing: GO:0001522 ! parse: GO:0001522 using "pseudouridine synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17802]) [-2] ! parse: GO:0001522 using "pseudouridine synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001229]) [-2] ! no existing xp def ! def: "The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of pseudouridine [cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001229])] [Term] id: GO:0001522 ! pseudouridine synthesis intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0001229 ! pseudouridine ! seconds spent parsing GO:0001522: 4.86 ! parsing: GO:0001544 ! No parse for: GO:0001544 initiation of primordial ovarian follicle growth ! parsing: GO:0001680 ! No parse for: GO:0001680 tRNA 3'-terminal CCA addition ! parsing: GO:0001682 ! No parse for: GO:0001682 tRNA 5'-leader removal ! parsing: GO:0001798 ! Already have xp for: GO:0001798 positive regulation of type IIa hypersensitivity ! CURRENT : positive regulation of biological process that regulates type IIa hypersensitivity [cdef(GO:0048518, [regulates=GO:0001794])] ! parsing: GO:0001801 ! Already have xp for: GO:0001801 positive regulation of type IIb hypersensitivity ! CURRENT : positive regulation of biological process that regulates type IIb hypersensitivity [cdef(GO:0048518, [regulates=GO:0001795])] ! parsing: GO:0001805 ! Already have xp for: GO:0001805 positive regulation of type III hypersensitivity ! CURRENT : positive regulation of biological process that regulates type III hypersensitivity [cdef(GO:0048518, [regulates=GO:0001802])] ! parsing: GO:0001809 ! Already have xp for: GO:0001809 positive regulation of type IV hypersensitivity ! CURRENT : positive regulation of biological process that regulates type IV hypersensitivity [cdef(GO:0048518, [regulates=GO:0001806])] ! parsing: GO:0001812 ! Already have xp for: GO:0001812 positive regulation of type I hypersensitivity ! CURRENT : positive regulation of biological process that regulates type I hypersensitivity [cdef(GO:0048518, [regulates=GO:0016068])] ! parsing: GO:0001815 ! Already have xp for: GO:0001815 positive regulation of antibody-dependent cellular cytotoxicity ! CURRENT : positive regulation of biological process that regulates antibody-dependent cellular cytotoxicity [cdef(GO:0048518, [regulates=GO:0001788])] ! parsing: GO:0001819 ! Already have xp for: GO:0001819 positive regulation of cytokine production ! CURRENT : positive regulation of biological process that regulates cytokine production [cdef(GO:0048518, [regulates=GO:0001816])] ! parsing: GO:0001844 ! No parse for: GO:0001844 protein insertion into mitochondrial membrane during induction of apoptosis ! parsing: GO:0001870 ! No parse for: GO:0001870 positive regulation of complement activation, lectin pathway ! parsing: GO:0001900 ! No parse for: GO:0001900 positive regulation of cytolysis by symbiont of host cells ! parsing: GO:0001912 ! Already have xp for: GO:0001912 positive regulation of leukocyte mediated cytotoxicity ! CURRENT : positive regulation of biological process that regulates leukocyte mediated cytotoxicity [cdef(GO:0048518, [regulates=GO:0001909])] ! parsing: GO:0001916 ! Already have xp for: GO:0001916 positive regulation of T cell mediated cytotoxicity ! CURRENT : positive regulation of biological process that regulates T cell mediated cytotoxicity [cdef(GO:0048518, [regulates=GO:0001913])] ! parsing: GO:0001921 ! Already have xp for: GO:0001921 positive regulation of receptor recycling ! CURRENT : positive regulation of biological process that regulates receptor recycling [cdef(GO:0048518, [regulates=GO:0001881])] ! parsing: GO:0001926 ! Already have xp for: GO:0001926 positive regulation of B-1 B cell differentiation ! CURRENT : positive regulation of biological process that regulates B-1 B cell differentiation [cdef(GO:0048518, [regulates=GO:0001923])] ! parsing: GO:0001930 ! Already have xp for: GO:0001930 positive regulation of exocyst assembly ! CURRENT : positive regulation of biological process that regulates exocyst assembly [cdef(GO:0048518, [regulates=GO:0001927])] ! parsing: GO:0001934 ! Already have xp for: GO:0001934 positive regulation of protein amino acid phosphorylation ! CURRENT : positive regulation of biological process that regulates protein amino acid phosphorylation [cdef(GO:0048518, [regulates=GO:0006468])] ! parsing: GO:0001938 ! Already have xp for: GO:0001938 positive regulation of endothelial cell proliferation ! CURRENT : positive regulation of biological process that regulates endothelial cell proliferation [cdef(GO:0048518, [regulates=GO:0001935])] ! parsing: GO:0001954 ! Already have xp for: GO:0001954 positive regulation of cell-matrix adhesion ! CURRENT : positive regulation of biological process that regulates cell-matrix adhesion [cdef(GO:0048518, [regulates=GO:0007160])] ! parsing: GO:0001956 ! Already have xp for: GO:0001956 positive regulation of neurotransmitter secretion ! CURRENT : positive regulation of biological process that regulates neurotransmitter secretion [cdef(GO:0048518, [regulates=GO:0007269])] ! parsing: GO:0001957 ! No parse for: GO:0001957 intramembranous ossification ! parsing: GO:0001961 ! Already have xp for: GO:0001961 positive regulation of cytokine and chemokine mediated signaling pathway ! CURRENT : positive regulation of biological process that regulates cytokine and chemokine mediated signaling pathway [cdef(GO:0048518, [regulates=GO:0019221])] ! parsing: GO:0001970 ! Already have xp for: GO:0001970 positive regulation of activation of membrane attack complex ! CURRENT : positive regulation of biological process that regulates activation of membrane attack complex [cdef(GO:0048518, [regulates=GO:0001905])] ! parsing: GO:0001988 ! No parse for: GO:0001988 positive regulation of heart rate in baroreceptor response to decreased systemic arterial blood pressure ! parsing: GO:0001989 ! No parse for: GO:0001989 positive regulation of the force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure ! parsing: GO:0001996 ! No parse for: GO:0001996 positive regulation of heart rate by epinephrine-norepinephrine ! parsing: GO:0001997 ! No parse for: GO:0001997 positive regulation of the force of heart contraction by epinephrine-norepinephrine ! parsing: GO:0002038 ! No parse for: GO:0002038 positive regulation of L-glutamate transport ! parsing: GO:0002052 ! Already have xp for: GO:0002052 positive regulation of neuroblast proliferation ! CURRENT : positive regulation of biological process that regulates neuroblast proliferation [cdef(GO:0048518, [regulates=GO:0007405])] ! parsing: GO:0002053 ! No parse for: GO:0002053 positive regulation of mesenchymal cell proliferation ! parsing: GO:0002092 ! Already have xp for: GO:0002092 positive regulation of receptor internalization ! CURRENT : positive regulation of biological process that regulates receptor internalization [cdef(GO:0048518, [regulates=GO:0031623])] ! parsing: GO:0002097 ! parse: GO:0002097 using "tRNA wobble base modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(SO:0001015, [OBO_REL:part_of=SO:0000253])]) [-3] ! parse: GO:0002097 using "tRNA wobble base modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:22695]), [OBO_REL:part_of=SO:0000253])]) [-5] ! parse: GO:0002097 using "tRNA wobble base modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=SO:0001236]), [OBO_REL:part_of=SO:0000253])]) [-5] ! no existing xp def ! def: "The process whereby the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to cdef(SO:0001015, [OBO_REL:part_of=SO:0000253]) [cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(SO:0001015, [OBO_REL:part_of=SO:0000253])])] [Term] id: GO:0002097 ! tRNA wobble base modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to _:cdef__SO_0001015_____OBO_REL_part_of___SO_0000253___ synonym: "tRNA wobble modification" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002097: 2.31 ! parsing: GO:0002098 ! parse: GO:0002098 using "tRNA wobble uridine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16704]), [OBO_REL:part_of=SO:0000253])]) [-5] ! no existing xp def ! def: "The process whereby a uridine in position 34 of a tRNA is post-transcriptionally modified." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16704]), [OBO_REL:part_of=SO:0000253]) [cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16704]), [OBO_REL:part_of=SO:0000253])])] [Term] id: GO:0002098 ! tRNA wobble uridine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16704_______OBO_REL_part_of___SO_0000253___ synonym: "tRNA wobble URIDINE modification" EXACT [OBOL:automatic] synonym: "tRNA wobble Uridine modification" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002098: 1.85 ! parsing: GO:0002099 ! parse: GO:0002099 using "tRNA wobble guanine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16235]), [OBO_REL:part_of=SO:0000253])]) [-5] ! no existing xp def ! def: "The process whereby a guanine in t position 34 of a tRNA is post-transcriptionally modified." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16235]), [OBO_REL:part_of=SO:0000253]) [cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16235]), [OBO_REL:part_of=SO:0000253])])] [Term] id: GO:0002099 ! tRNA wobble guanine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16235_______OBO_REL_part_of___SO_0000253___ synonym: "tRNA wobble 2-amino-1, 9-dihydro-6 H-purin-6-one modification" EXACT [OBOL:automatic] synonym: "tRNA wobble GUANINE modification" EXACT [OBOL:automatic] synonym: "tRNA wobble Guanine modification" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002099: 1.85 ! parsing: GO:0002100 ! parse: GO:0002100 using "tRNA wobble adenosine to inosine editing" => cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16335]), [OBO_REL:part_of=SO:0000253]), OBO_REL:results_in_transformation_to=CHEBI:17596]) [-6] ! parse: GO:0002100 using "tRNA wobble adenosine to inosine editing" => cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16335]), [OBO_REL:part_of=SO:0000253]), OBO_REL:results_in_transformation_to=SO:0001230]) [-6] ! no existing xp def ! def: "The process whereby an adenosine in position 34 of a tRNA is post-transcriptionally corverted to inosine." ! PROPOSED: biopolymer metabolic process that OBO_REL:results_in_change_to cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16335]), [OBO_REL:part_of=SO:0000253]) and OBO_REL:results_in_transformation_to inosine [cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16335]), [OBO_REL:part_of=SO:0000253]), OBO_REL:results_in_transformation_to=SO:0001230])] [Term] id: GO:0002100 ! tRNA wobble adenosine to inosine editing intersection_of: GO:0043283 ! biopolymer metabolic process intersection_of: OBO_REL:results_in_change_to _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16335_______OBO_REL_part_of___SO_0000253___ intersection_of: OBO_REL:results_in_transformation_to SO:0001230 ! inosine synonym: "tRNA wobble ADENOSINE to inosine editing" EXACT [OBOL:automatic] synonym: "tRNA wobble Adenosine to inosine editing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002100: 2.09 ! parsing: GO:0002101 ! parse: GO:0002101 using "tRNA wobble cytosine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16040]), [OBO_REL:part_of=SO:0000253])]) [-5] ! no existing xp def ! def: "The process whereby a cytosine in position 34 of a tRNA is post-transcriptionally modified." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16040]), [OBO_REL:part_of=SO:0000253]) [cdef(GO:0008152, [OBO_REL:results_in_change_to=cdef(cdef(SO:0001015, [OBO_REL:connected_to=CHEBI:16040]), [OBO_REL:part_of=SO:0000253])])] [Term] id: GO:0002101 ! tRNA wobble cytosine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16040_______OBO_REL_part_of___SO_0000253___ synonym: "tRNA wobble 4-aminopyrimidin-2 (1 H) -one modification" EXACT [OBOL:automatic] synonym: "tRNA wobble Cytosine modification" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002101: 1.84 ! parsing: GO:0002107 ! No parse for: GO:0002107 generation of mature 3'-end of 5S rRNA generated by RNA polymerase III ! parsing: GO:0002206 ! No parse for: GO:0002206 gene conversion of immunoglobulin genes ! parsing: GO:0002207 ! No parse for: GO:0002207 gene conversion of immunoglobulin genes during immune response ! parsing: GO:0002225 ! Already have xp for: GO:0002225 positive regulation of antimicrobial peptide production ! CURRENT : positive regulation of biological process that regulates antimicrobial peptide production [cdef(GO:0048518, [regulates=GO:0002775])] ! parsing: GO:0002230 ! No parse for: GO:0002230 positive regulation of defense response to virus by host ! parsing: GO:0002258 ! Already have xp for: GO:0002258 positive regulation of kinin cascade ! CURRENT : positive regulation of biological process that regulates kinin cascade [cdef(GO:0048518, [regulates=GO:0002254])] ! parsing: GO:0002332 ! No parse for: GO:0002332 transitional stage B cell differentiation ! parsing: GO:0002333 ! No parse for: GO:0002333 transitional one stage B cell differentiation ! parsing: GO:0002334 ! No parse for: GO:0002334 transitional two stage B cell differentiation ! parsing: GO:0002428 ! No parse for: GO:0002428 antigen processing and presentation of peptide antigen via MHC class Ib ! parsing: GO:0002474 ! No parse for: GO:0002474 antigen processing and presentation of peptide antigen via MHC class I ! parsing: GO:0002492 ! No parse for: GO:0002492 peptide antigen assembly with MHC class Ib protein complex ! parsing: GO:0002495 ! No parse for: GO:0002495 antigen processing and presentation of peptide antigen via MHC class II ! parsing: GO:0002501 ! No parse for: GO:0002501 peptide antigen assembly with MHC protein complex ! parsing: GO:0002502 ! No parse for: GO:0002502 peptide antigen assembly with MHC class I protein complex ! parsing: GO:0002503 ! No parse for: GO:0002503 peptide antigen assembly with MHC class II protein complex ! parsing: GO:0002504 ! No parse for: GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II ! parsing: GO:0002547 ! Already have xp for: GO:0002547 positive regulation of tissue kallikrein-kinin cascade ! CURRENT : positive regulation of biological process that regulates tissue kallikrein-kinin cascade [cdef(GO:0048518, [regulates=GO:0002255])] ! parsing: GO:0002550 ! Already have xp for: GO:0002550 positive regulation of plasma kallikrein-kinin cascade ! CURRENT : positive regulation of biological process that regulates plasma kallikrein-kinin cascade [cdef(GO:0048518, [regulates=GO:0002353])] ! parsing: GO:0002579 ! Already have xp for: GO:0002579 positive regulation of antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0019882])] ! parsing: GO:0002582 ! Already have xp for: GO:0002582 positive regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of peptide or polysaccharide antigen via MHC class II [cdef(GO:0048518, [regulates=GO:0002504])] ! parsing: GO:0002585 ! Already have xp for: GO:0002585 positive regulation of antigen processing and presentation of peptide antigen ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of peptide antigen [cdef(GO:0048518, [regulates=GO:0048002])] ! parsing: GO:0002588 ! Already have xp for: GO:0002588 positive regulation of antigen processing and presentation of peptide antigen via MHC class II ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of peptide antigen via MHC class II [cdef(GO:0048518, [regulates=GO:0002495])] ! parsing: GO:0002591 ! Already have xp for: GO:0002591 positive regulation of antigen processing and presentation of peptide antigen via MHC class I ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of peptide antigen via MHC class I [cdef(GO:0048518, [regulates=GO:0002474])] ! parsing: GO:0002594 ! Already have xp for: GO:0002594 positive regulation of antigen processing and presentation via MHC class Ib ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation via MHC class Ib [cdef(GO:0048518, [regulates=GO:0002475])] ! parsing: GO:0002597 ! Already have xp for: GO:0002597 positive regulation of antigen processing and presentation of peptide antigen via MHC class Ib ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of peptide antigen via MHC class Ib [cdef(GO:0048518, [regulates=GO:0002428])] ! parsing: GO:0002600 ! Already have xp for: GO:0002600 positive regulation of antigen processing and presentation of lipid antigen via MHC class Ib ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of lipid antigen via MHC class Ib [cdef(GO:0048518, [regulates=GO:0048003])] ! parsing: GO:0002603 ! Already have xp for: GO:0002603 positive regulation of antigen processing and presentation of polysaccharide antigen via MHC class II ! CURRENT : positive regulation of biological process that regulates antigen processing and presentation of polysaccharide antigen via MHC class II [cdef(GO:0048518, [regulates=GO:0002505])] ! parsing: GO:0002606 ! Already have xp for: GO:0002606 positive regulation of dendritic cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates dendritic cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002468])] ! parsing: GO:0002609 ! Already have xp for: GO:0002609 positive regulation of myeloid dendritic cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates myeloid dendritic cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002469])] ! parsing: GO:0002612 ! Already have xp for: GO:0002612 positive regulation of plasmacytoid dendritic cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates plasmacytoid dendritic cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002470])] ! parsing: GO:0002615 ! Already have xp for: GO:0002615 positive regulation of monocyte antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates monocyte antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002471])] ! parsing: GO:0002618 ! Already have xp for: GO:0002618 positive regulation of macrophage antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates macrophage antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002472])] ! parsing: GO:0002621 ! Already have xp for: GO:0002621 positive regulation of non-professional antigen presenting cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates non-professional antigen presenting cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002473])] ! parsing: GO:0002624 ! Already have xp for: GO:0002624 positive regulation of B cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates B cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002450])] ! parsing: GO:0002627 ! Already have xp for: GO:0002627 positive regulation of T cell antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates T cell antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002457])] ! parsing: GO:0002630 ! Already have xp for: GO:0002630 positive regulation of proteolysis associated with antigen processing and presentation ! CURRENT : positive regulation of biological process that regulates proteolysis associated with antigen processing and presentation [cdef(GO:0048518, [regulates=GO:0002496])] ! parsing: GO:0002633 ! Already have xp for: GO:0002633 positive regulation of granuloma formation ! CURRENT : positive regulation of biological process that regulates granuloma formation [cdef(GO:0048518, [regulates=GO:0002432])] ! parsing: GO:0002636 ! Already have xp for: GO:0002636 positive regulation of germinal center formation ! CURRENT : positive regulation of biological process that regulates germinal center formation [cdef(GO:0048518, [regulates=GO:0002467])] ! parsing: GO:0002639 ! Already have xp for: GO:0002639 positive regulation of immunoglobulin production ! CURRENT : positive regulation of biological process that regulates immunoglobulin production [cdef(GO:0048518, [regulates=GO:0002377])] ! parsing: GO:0002642 ! Already have xp for: GO:0002642 positive regulation of immunoglobulin biosynthetic process ! CURRENT : positive regulation of biological process that regulates immunoglobulin biosynthetic process [cdef(GO:0048518, [regulates=GO:0002378])] ! parsing: GO:0002645 ! Already have xp for: GO:0002645 positive regulation of tolerance induction ! CURRENT : positive regulation of biological process that regulates tolerance induction [cdef(GO:0048518, [regulates=GO:0002507])] ! parsing: GO:0002648 ! Already have xp for: GO:0002648 positive regulation of central tolerance induction ! CURRENT : positive regulation of biological process that regulates central tolerance induction [cdef(GO:0048518, [regulates=GO:0002508])] ! parsing: GO:0002651 ! Already have xp for: GO:0002651 positive regulation of tolerance induction to self antigen ! CURRENT : positive regulation of biological process that regulates tolerance induction to self antigen [cdef(GO:0048518, [regulates=GO:0002513])] ! parsing: GO:0002654 ! Already have xp for: GO:0002654 positive regulation of tolerance induction dependent upon immune response ! CURRENT : positive regulation of biological process that regulates tolerance induction dependent upon immune response [cdef(GO:0048518, [regulates=GO:0002461])] ! parsing: GO:0002657 ! Already have xp for: GO:0002657 positive regulation of tolerance induction to nonself antigen ! CURRENT : positive regulation of biological process that regulates tolerance induction to nonself antigen [cdef(GO:0048518, [regulates=GO:0002462])] ! parsing: GO:0002660 ! Already have xp for: GO:0002660 positive regulation of peripheral tolerance induction ! CURRENT : positive regulation of biological process that regulates peripheral tolerance induction [cdef(GO:0048518, [regulates=GO:0002465])] ! parsing: GO:0002663 ! Already have xp for: GO:0002663 positive regulation of B cell tolerance induction ! CURRENT : positive regulation of biological process that regulates B cell tolerance induction [cdef(GO:0048518, [regulates=GO:0002514])] ! parsing: GO:0002666 ! Already have xp for: GO:0002666 positive regulation of T cell tolerance induction ! CURRENT : positive regulation of biological process that regulates T cell tolerance induction [cdef(GO:0048518, [regulates=GO:0002517])] ! parsing: GO:0002669 ! Already have xp for: GO:0002669 positive regulation of T cell anergy ! CURRENT : positive regulation of biological process that regulates T cell anergy [cdef(GO:0048518, [regulates=GO:0002870])] ! parsing: GO:0002672 ! Already have xp for: GO:0002672 positive regulation of B cell anergy ! CURRENT : positive regulation of biological process that regulates B cell anergy [cdef(GO:0048518, [regulates=GO:0002515])] ! parsing: GO:0002675 ! Already have xp for: GO:0002675 positive regulation of acute inflammatory response ! CURRENT : positive regulation of biological process that regulates acute inflammatory response [cdef(GO:0048518, [regulates=GO:0002526])] ! parsing: GO:0002678 ! Already have xp for: GO:0002678 positive regulation of chronic inflammatory response ! CURRENT : positive regulation of biological process that regulates chronic inflammatory response [cdef(GO:0048518, [regulates=GO:0002544])] ! parsing: GO:0002684 ! Already have xp for: GO:0002684 positive regulation of immune system process ! CURRENT : positive regulation of biological process that regulates immune system process [cdef(GO:0048518, [regulates=GO:0002376])] ! parsing: GO:0002687 ! Already have xp for: GO:0002687 positive regulation of leukocyte migration ! CURRENT : positive regulation of biological process that regulates leukocyte migration [cdef(GO:0048518, [regulates=GO:0050900])] ! parsing: GO:0002690 ! Already have xp for: GO:0002690 positive regulation of leukocyte chemotaxis ! CURRENT : positive regulation of biological process that regulates leukocyte chemotaxis [cdef(GO:0048518, [regulates=GO:0030595])] ! parsing: GO:0002693 ! Already have xp for: GO:0002693 positive regulation of cellular extravasation ! CURRENT : positive regulation of biological process that regulates cellular extravasation [cdef(GO:0048518, [regulates=GO:0045123])] ! parsing: GO:0002696 ! Already have xp for: GO:0002696 positive regulation of leukocyte activation ! CURRENT : positive regulation of biological process that regulates leukocyte activation [cdef(GO:0048518, [regulates=GO:0045321])] ! parsing: GO:0002699 ! Already have xp for: GO:0002699 positive regulation of immune effector process ! CURRENT : positive regulation of biological process that regulates immune effector process [cdef(GO:0048518, [regulates=GO:0002252])] ! parsing: GO:0002702 ! Already have xp for: GO:0002702 positive regulation of production of molecular mediator of immune response ! CURRENT : positive regulation of biological process that regulates production of molecular mediator of immune response [cdef(GO:0048518, [regulates=GO:0002440])] ! parsing: GO:0002705 ! Already have xp for: GO:0002705 positive regulation of leukocyte mediated immunity ! CURRENT : positive regulation of biological process that regulates leukocyte mediated immunity [cdef(GO:0048518, [regulates=GO:0002443])] ! parsing: GO:0002708 ! Already have xp for: GO:0002708 positive regulation of lymphocyte mediated immunity ! CURRENT : positive regulation of biological process that regulates lymphocyte mediated immunity [cdef(GO:0048518, [regulates=GO:0002449])] ! parsing: GO:0002711 ! Already have xp for: GO:0002711 positive regulation of T cell mediated immunity ! CURRENT : positive regulation of biological process that regulates T cell mediated immunity [cdef(GO:0048518, [regulates=GO:0002456])] ! parsing: GO:0002714 ! Already have xp for: GO:0002714 positive regulation of B cell mediated immunity ! CURRENT : positive regulation of biological process that regulates B cell mediated immunity [cdef(GO:0048518, [regulates=GO:0019724])] ! parsing: GO:0002717 ! Already have xp for: GO:0002717 positive regulation of natural killer cell mediated immunity ! CURRENT : positive regulation of biological process that regulates natural killer cell mediated immunity [cdef(GO:0048518, [regulates=GO:0002228])] ! parsing: GO:0002720 ! Already have xp for: GO:0002720 positive regulation of cytokine production during immune response ! CURRENT : positive regulation of biological process that regulates cytokine production during immune response [cdef(GO:0048518, [regulates=GO:0002367])] ! parsing: GO:0002723 ! Already have xp for: GO:0002723 positive regulation of B cell cytokine production ! CURRENT : positive regulation of biological process that regulates B cell cytokine production [cdef(GO:0048518, [regulates=GO:0002368])] ! parsing: GO:0002726 ! Already have xp for: GO:0002726 positive regulation of T cell cytokine production ! CURRENT : positive regulation of biological process that regulates T cell cytokine production [cdef(GO:0048518, [regulates=GO:0002369])] ! parsing: GO:0002729 ! Already have xp for: GO:0002729 positive regulation of natural killer cell cytokine production ! CURRENT : positive regulation of biological process that regulates natural killer cell cytokine production [cdef(GO:0048518, [regulates=GO:0002370])] ! parsing: GO:0002732 ! Already have xp for: GO:0002732 positive regulation of dendritic cell cytokine production ! CURRENT : positive regulation of biological process that regulates dendritic cell cytokine production [cdef(GO:0048518, [regulates=GO:0002371])] ! parsing: GO:0002735 ! Already have xp for: GO:0002735 positive regulation of myeloid dendritic cell cytokine production ! CURRENT : positive regulation of biological process that regulates myeloid dendritic cell cytokine production [cdef(GO:0048518, [regulates=GO:0002372])] ! parsing: GO:0002738 ! Already have xp for: GO:0002738 positive regulation of plasmacytoid dendritic cell cytokine production ! CURRENT : positive regulation of biological process that regulates plasmacytoid dendritic cell cytokine production [cdef(GO:0048518, [regulates=GO:0002373])] ! parsing: GO:0002741 ! Already have xp for: GO:0002741 positive regulation of cytokine secretion during immune response ! CURRENT : positive regulation of biological process that regulates cytokine secretion during immune response [cdef(GO:0048518, [regulates=GO:0002374])] ! parsing: GO:0002744 ! Already have xp for: GO:0002744 positive regulation of cytokine biosynthetic process during immune response ! CURRENT : positive regulation of biological process that regulates cytokine biosynthetic process during immune response [cdef(GO:0048518, [regulates=GO:0002375])] ! parsing: GO:0002760 ! Already have xp for: GO:0002760 positive regulation of antimicrobial humoral response ! CURRENT : positive regulation of biological process that regulates antimicrobial humoral response [cdef(GO:0048518, [regulates=GO:0019730])] ! parsing: GO:0002763 ! Already have xp for: GO:0002763 positive regulation of myeloid leukocyte differentiation ! CURRENT : positive regulation of biological process that regulates myeloid leukocyte differentiation [cdef(GO:0048518, [regulates=GO:0002573])] ! parsing: GO:0002790 ! parse: GO:0002790 using "peptide secretion" => cdef(GO:0046903, [OBO_REL:results_in_release_of=CHEBI:16670]) [-2] ! parse: GO:0002790 using "peptide secretion" => cdef(GO:0046903, [OBO_REL:results_in_release_of=SO:0001064]) [-2] ! no existing xp def ! def: "The regulated release of a peptide from a cell or group of cells." ! PROPOSED: secretion that OBO_REL:results_in_release_of active_peptide [cdef(GO:0046903, [OBO_REL:results_in_release_of=SO:0001064])] [Term] id: GO:0002790 ! peptide secretion intersection_of: GO:0046903 ! secretion intersection_of: OBO_REL:results_in_release_of SO:0001064 ! active_peptide synonym: "active peptide secretion" EXACT [OBOL:automatic] ! seconds spent parsing GO:0002790: 4.11 ! parsing: GO:0002793 ! Already have xp for: GO:0002793 positive regulation of peptide secretion ! CURRENT : positive regulation of biological process that regulates peptide secretion [cdef(GO:0048518, [regulates=GO:0002790])] ! parsing: GO:0002796 ! Already have xp for: GO:0002796 positive regulation of antimicrobial peptide secretion ! CURRENT : positive regulation of biological process that regulates antimicrobial peptide secretion [cdef(GO:0048518, [regulates=GO:0002776])] ! parsing: GO:0002799 ! Already have xp for: GO:0002799 positive regulation of antibacterial peptide secretion ! CURRENT : positive regulation of biological process that regulates antibacterial peptide secretion [cdef(GO:0048518, [regulates=GO:0002779])] ! parsing: GO:0002802 ! Already have xp for: GO:0002802 positive regulation of antifungal peptide secretion ! CURRENT : positive regulation of biological process that regulates antifungal peptide secretion [cdef(GO:0048518, [regulates=GO:0002782])] ! parsing: GO:0002803 ! Already have xp for: GO:0002803 positive regulation of antibacterial peptide production ! CURRENT : positive regulation of biological process that regulates antibacterial peptide production [cdef(GO:0048518, [regulates=GO:0002778])] ! parsing: GO:0002804 ! Already have xp for: GO:0002804 positive regulation of antifungal peptide production ! CURRENT : positive regulation of biological process that regulates antifungal peptide production [cdef(GO:0048518, [regulates=GO:0002781])] ! parsing: GO:0002807 ! Already have xp for: GO:0002807 positive regulation of antimicrobial peptide biosynthetic process ! CURRENT : positive regulation of biological process that regulates antimicrobial peptide biosynthetic process [cdef(GO:0048518, [regulates=GO:0002777])] ! parsing: GO:0002821 ! Already have xp for: GO:0002821 positive regulation of adaptive immune response ! CURRENT : positive regulation of biological process that regulates adaptive immune response [cdef(GO:0048518, [regulates=GO:0002250])] ! parsing: GO:0002824 ! Already have xp for: GO:0002824 positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains ! CURRENT : positive regulation of biological process that regulates adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains [cdef(GO:0048518, [regulates=GO:0002460])] ! parsing: GO:0002827 ! Already have xp for: GO:0002827 positive regulation of T-helper 1 type immune response ! CURRENT : positive regulation of biological process that regulates T-helper 1 type immune response [cdef(GO:0048518, [regulates=GO:0042088])] ! parsing: GO:0002830 ! Already have xp for: GO:0002830 positive regulation of T-helper 2 type immune response ! CURRENT : positive regulation of biological process that regulates T-helper 2 type immune response [cdef(GO:0048518, [regulates=GO:0042092])] ! parsing: GO:0002833 ! Already have xp for: GO:0002833 positive regulation of response to biotic stimulus ! CURRENT : positive regulation of biological process that regulates response to biotic stimulus [cdef(GO:0048518, [regulates=GO:0009607])] ! parsing: GO:0002836 ! Already have xp for: GO:0002836 positive regulation of response to tumor cell ! CURRENT : positive regulation of biological process that regulates response to tumor cell [cdef(GO:0048518, [regulates=GO:0002347])] ! parsing: GO:0002839 ! Already have xp for: GO:0002839 positive regulation of immune response to tumor cell ! CURRENT : positive regulation of biological process that regulates immune response to tumor cell [cdef(GO:0048518, [regulates=GO:0002418])] ! parsing: GO:0002842 ! Already have xp for: GO:0002842 positive regulation of T cell mediated immune response to tumor cell ! CURRENT : positive regulation of biological process that regulates T cell mediated immune response to tumor cell [cdef(GO:0048518, [regulates=GO:0002424])] ! parsing: GO:0002845 ! Already have xp for: GO:0002845 positive regulation of tolerance induction to tumor cell ! CURRENT : positive regulation of biological process that regulates tolerance induction to tumor cell [cdef(GO:0048518, [regulates=GO:0002413])] ! parsing: GO:0002848 ! Already have xp for: GO:0002848 positive regulation of T cell tolerance induction to tumor cell ! CURRENT : positive regulation of biological process that regulates T cell tolerance induction to tumor cell [cdef(GO:0048518, [regulates=GO:0002411])] ! parsing: GO:0002851 ! Already have xp for: GO:0002851 positive regulation of peripheral T cell tolerance induction ! CURRENT : positive regulation of biological process that regulates peripheral T cell tolerance induction [cdef(GO:0048518, [regulates=GO:0002458])] ! parsing: GO:0002854 ! Already have xp for: GO:0002854 positive regulation of T cell mediated cytotoxicity directed against tumor cell target ! CURRENT : positive regulation of biological process that regulates T cell mediated cytotoxicity directed against tumor cell target [cdef(GO:0048518, [regulates=GO:0002419])] ! parsing: GO:0002857 ! Already have xp for: GO:0002857 positive regulation of natural killer cell mediated immune response to tumor cell ! CURRENT : positive regulation of biological process that regulates natural killer cell mediated immune response to tumor cell [cdef(GO:0048518, [regulates=GO:0002423])] ! parsing: GO:0002860 ! Already have xp for: GO:0002860 positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target ! CURRENT : positive regulation of biological process that regulates natural killer cell mediated cytotoxicity directed against tumor cell target [cdef(GO:0048518, [regulates=GO:0002420])] ! parsing: GO:0002863 ! Already have xp for: GO:0002863 positive regulation of inflammatory response to antigenic stimulus ! CURRENT : positive regulation of biological process that regulates inflammatory response to antigenic stimulus [cdef(GO:0048518, [regulates=GO:0002437])] ! parsing: GO:0002866 ! Already have xp for: GO:0002866 positive regulation of acute inflammatory response to antigenic stimulus ! CURRENT : positive regulation of biological process that regulates acute inflammatory response to antigenic stimulus [cdef(GO:0048518, [regulates=GO:0002438])] ! parsing: GO:0002869 ! Already have xp for: GO:0002869 positive regulation of B cell deletion ! CURRENT : positive regulation of biological process that regulates B cell deletion [cdef(GO:0048518, [regulates=GO:0002516])] ! parsing: GO:0002873 ! Already have xp for: GO:0002873 positive regulation of natural killer cell tolerance induction ! CURRENT : positive regulation of biological process that regulates natural killer cell tolerance induction [cdef(GO:0048518, [regulates=GO:0002519])] ! parsing: GO:0002876 ! Already have xp for: GO:0002876 positive regulation of chronic inflammatory response to antigenic stimulus ! CURRENT : positive regulation of biological process that regulates chronic inflammatory response to antigenic stimulus [cdef(GO:0048518, [regulates=GO:0002439])] ! parsing: GO:0002879 ! Already have xp for: GO:0002879 positive regulation of acute inflammatory response to non-antigenic stimulus ! CURRENT : positive regulation of biological process that regulates acute inflammatory response to non-antigenic stimulus [cdef(GO:0048518, [regulates=GO:0002525])] ! parsing: GO:0002882 ! Already have xp for: GO:0002882 positive regulation of chronic inflammatory response to non-antigenic stimulus ! CURRENT : positive regulation of biological process that regulates chronic inflammatory response to non-antigenic stimulus [cdef(GO:0048518, [regulates=GO:0002545])] ! parsing: GO:0002885 ! Already have xp for: GO:0002885 positive regulation of hypersensitivity ! CURRENT : positive regulation of biological process that regulates hypersensitivity [cdef(GO:0048518, [regulates=GO:0002524])] ! parsing: GO:0002888 ! Already have xp for: GO:0002888 positive regulation of myeloid leukocyte mediated immunity ! CURRENT : positive regulation of biological process that regulates myeloid leukocyte mediated immunity [cdef(GO:0048518, [regulates=GO:0002444])] ! parsing: GO:0002891 ! Already have xp for: GO:0002891 positive regulation of immunoglobulin mediated immune response ! CURRENT : positive regulation of biological process that regulates immunoglobulin mediated immune response [cdef(GO:0048518, [regulates=GO:0016064])] ! parsing: GO:0002894 ! Already have xp for: GO:0002894 positive regulation of type II hypersensitivity ! CURRENT : positive regulation of biological process that regulates type II hypersensitivity [cdef(GO:0048518, [regulates=GO:0002445])] ! parsing: GO:0002897 ! Already have xp for: GO:0002897 positive regulation of central B cell tolerance induction ! CURRENT : positive regulation of biological process that regulates central B cell tolerance induction [cdef(GO:0048518, [regulates=GO:0002510])] ! parsing: GO:0002900 ! Already have xp for: GO:0002900 positive regulation of central B cell deletion ! CURRENT : positive regulation of biological process that regulates central B cell deletion [cdef(GO:0048518, [regulates=GO:0002342])] ! parsing: GO:0002904 ! Already have xp for: GO:0002904 positive regulation of B cell apoptosis ! CURRENT : positive regulation of biological process that regulates B cell apoptosis [cdef(GO:0048518, [regulates=GO:0001783])] ! parsing: GO:0002907 ! Already have xp for: GO:0002907 positive regulation of mature B cell apoptosis ! CURRENT : positive regulation of biological process that regulates mature B cell apoptosis [cdef(GO:0048518, [regulates=GO:0002901])] ! parsing: GO:0002910 ! Already have xp for: GO:0002910 positive regulation of peripheral B cell deletion ! CURRENT : positive regulation of biological process that regulates peripheral B cell deletion [cdef(GO:0048518, [regulates=GO:0002454])] ! parsing: GO:0002913 ! Already have xp for: GO:0002913 positive regulation of lymphocyte anergy ! CURRENT : positive regulation of biological process that regulates lymphocyte anergy [cdef(GO:0048518, [regulates=GO:0002249])] ! parsing: GO:0002916 ! Already have xp for: GO:0002916 positive regulation of central B cell anergy ! CURRENT : positive regulation of biological process that regulates central B cell anergy [cdef(GO:0048518, [regulates=GO:0002341])] ! parsing: GO:0002919 ! Already have xp for: GO:0002919 positive regulation of peripheral B cell anergy ! CURRENT : positive regulation of biological process that regulates peripheral B cell anergy [cdef(GO:0048518, [regulates=GO:0002453])] ! parsing: GO:0002922 ! Already have xp for: GO:0002922 positive regulation of humoral immune response ! CURRENT : positive regulation of biological process that regulates humoral immune response [cdef(GO:0048518, [regulates=GO:0006959])] ! parsing: GO:0002925 ! Already have xp for: GO:0002925 positive regulation of humoral immune response mediated by circulating immunoglobulin ! CURRENT : positive regulation of biological process that regulates humoral immune response mediated by circulating immunoglobulin [cdef(GO:0048518, [regulates=GO:0002455])] ! parsing: GO:0003001 ! No parse for: GO:0003001 generation of a signal involved in cell-cell signaling ! parsing: GO:0003059 ! No parse for: GO:0003059 positive regulation of the force of heart contraction by epinephrine ! parsing: GO:0003061 ! No parse for: GO:0003061 positive regulation of the force of heart contraction by norepinephrine ! parsing: GO:0003065 ! No parse for: GO:0003065 positive regulation of heart rate by epinephrine ! parsing: GO:0003066 ! parse: GO:0003066 using "positive regulation of heart rate by adrenaline" => cdef(GO:0010460, [OBO_REL:mediated_by=CHEBI:33568]) [-2] ! no existing xp def ! def: "The process by which the secretion of norepinephrine into the bloodstream or released from nerve endings increases the rate of heart muscle contraction." ! PROPOSED: positive regulation of heart rate that OBO_REL:mediated_by adrenaline [cdef(GO:0010460, [OBO_REL:mediated_by=CHEBI:33568])] [Term] id: GO:0003066 ! positive regulation of heart rate by norepinephrine intersection_of: GO:0010460 ! positive regulation of heart rate intersection_of: OBO_REL:mediated_by CHEBI:33568 ! adrenaline synonym: "4-[ 1-hydroxy-2-( methylamino) ethyl ] benzene-1, 2-diol mediated positive regulation of heart rate" EXACT [OBOL:automatic] ! seconds spent parsing GO:0003066: 7.71 ! parsing: GO:0003079 ! No parse for: GO:0003079 positive regulation of natriuresis ! parsing: GO:0003082 ! No parse for: GO:0003082 positive regulation of renal output by angiotensin ! parsing: GO:0003084 ! No parse for: GO:0003084 positive regulation of systemic arterial blood pressure ! parsing: GO:0003087 ! No parse for: GO:0003087 positive regulation of the force of heart contraction by neuronal epinephrine ! parsing: GO:0003088 ! No parse for: GO:0003088 positive regulation of the force of heart contraction by circulating epinephrine ! parsing: GO:0003089 ! No parse for: GO:0003089 positive regulation of the force of heart contraction by circulating epinephrine-norepinephrine ! parsing: GO:0003090 ! No parse for: GO:0003090 positive regulation of the force of heart contraction by neuronal epinephrine-norepinephrine ! parsing: GO:0003099 ! No parse for: GO:0003099 positive regulation of the force of heart contraction by chemical signal ! parsing: GO:0003102 ! parse: GO:0003102 using "positive regulation of diuresis by angiotensin" => cdef(GO:0003103, [OBO_REL:mediated_by=CHEBI:48433]) [-2] ! no existing xp def ! def: "Any process mediated by angiotensin that increases the rate of diuresis." ! PROPOSED: positive regulation of diuresis that OBO_REL:mediated_by angiotensin [cdef(GO:0003103, [OBO_REL:mediated_by=CHEBI:48433])] [Term] id: GO:0003102 ! positive regulation of diuresis by angiotensin intersection_of: GO:0003103 ! positive regulation of diuresis intersection_of: OBO_REL:mediated_by CHEBI:48433 ! angiotensin ! seconds spent parsing GO:0003102: 3.17 ! parsing: GO:0003103 ! No parse for: GO:0003103 positive regulation of diuresis ! parsing: GO:0003104 ! No parse for: GO:0003104 positive regulation of glomerular filtration ! parsing: GO:0003107 ! parse: GO:0003107 using "positive regulation of natriuresis by angiotensin" => cdef(GO:0003079, [OBO_REL:mediated_by=CHEBI:48433]) [-2] ! no existing xp def ! def: "The process by which angiotensin increases the rate of natriuresis indirectly via diuresis. Natriuresis is the process of renal sodium excretion." ! PROPOSED: positive regulation of natriuresis that OBO_REL:mediated_by angiotensin [cdef(GO:0003079, [OBO_REL:mediated_by=CHEBI:48433])] [Term] id: GO:0003107 ! positive regulation of natriuresis by angiotensin intersection_of: GO:0003079 ! positive regulation of natriuresis intersection_of: OBO_REL:mediated_by CHEBI:48433 ! angiotensin ! seconds spent parsing GO:0003107: 2.65 ! parsing: GO:0003109 ! No parse for: GO:0003109 positive regulation of the force of heart contraction by circulating norepinephrine ! parsing: GO:0003110 ! No parse for: GO:0003110 positive regulation of the force of heart contraction by neuronal norepinephrine ! parsing: GO:0003111 ! No parse for: GO:0003111 positive regulation of heart rate by circulating epinephrine ! parsing: GO:0003112 ! No parse for: GO:0003112 positive regulation of heart rate by neuronal epinephrine ! parsing: GO:0003113 ! No parse for: GO:0003113 positive regulation of heart rate by neuronal norepinephrine ! parsing: GO:0003114 ! No parse for: GO:0003114 positive regulation of heart rate by circulating norepinephrine ! parsing: GO:0006080 ! No parse for: GO:0006080 substituted mannan metabolic process ! parsing: GO:0006091 ! No parse for: GO:0006091 generation of precursor metabolites and energy ! parsing: GO:0006148 ! parse: GO:0006148 using "inosine breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:17596]) [-2] ! parse: GO:0006148 using "inosine breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001230]) [-2] ! parse: GO:0006148 using "inosine catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:17596]) [-2] ! parse: GO:0006148 using "inosine catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001230]) [-2] ! parse: GO:0006148 using "inosine catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:17596]) [-2] ! parse: GO:0006148 using "inosine catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001230]) [-2] ! parse: GO:0006148 using "inosine degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:17596]) [-2] ! parse: GO:0006148 using "inosine degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001230]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of inosine [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001230])] [Term] id: GO:0006148 ! inosine catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0001230 ! inosine ! seconds spent parsing GO:0006148: 17.16 ! parsing: GO:0006190 ! No parse for: GO:0006190 inosine salvage ! parsing: GO:0006276 ! No parse for: GO:0006276 plasmid maintenance ! parsing: GO:0006280 ! No parse for: GO:0006280 mutagenesis ! parsing: GO:0006283 ! No parse for: GO:0006283 transcription-coupled nucleotide-excision repair ! parsing: GO:0006284 ! No parse for: GO:0006284 base-excision repair ! parsing: GO:0006285 ! No parse for: GO:0006285 base-excision repair, AP site formation ! parsing: GO:0006286 ! No parse for: GO:0006286 base-excision repair, base-free sugar-phosphate removal ! parsing: GO:0006287 ! No parse for: GO:0006287 base-excision repair, gap-filling ! parsing: GO:0006288 ! No parse for: GO:0006288 base-excision repair, DNA ligation ! parsing: GO:0006311 ! No parse for: GO:0006311 meiotic gene conversion ! parsing: GO:0006314 ! No parse for: GO:0006314 intron homing ! parsing: GO:0006336 ! No parse for: GO:0006336 DNA replication-independent nucleosome assembly ! parsing: GO:0006342 ! parse: GO:0006342 using "transcriptional gene silencing" => cdef(GO:0016458, [OBO_REL:part_of=GO:0006350]) [-2] ! no existing xp def ! def: "Repression of transcription by conversion of large regions of DNA into an inaccessible state often called heterochromatin." ! PROPOSED: gene silencing that OBO_REL:part_of transcription [cdef(GO:0016458, [OBO_REL:part_of=GO:0006350])] [Term] id: GO:0006342 ! chromatin silencing intersection_of: GO:0016458 ! gene silencing intersection_of: OBO_REL:part_of GO:0006350 ! transcription ! seconds spent parsing GO:0006342: 7.64 ! parsing: GO:0006349 ! No parse for: GO:0006349 genetic imprinting ! parsing: GO:0006351 ! No parse for: GO:0006351 transcription, DNA-dependent ! parsing: GO:0006352 ! No parse for: GO:0006352 transcription initiation ! parsing: GO:0006353 ! No parse for: GO:0006353 transcription termination ! parsing: GO:0006354 ! No parse for: GO:0006354 RNA elongation ! parsing: GO:0006355 ! No parse for: GO:0006355 regulation of transcription, DNA-dependent ! parsing: GO:0006360 ! No parse for: GO:0006360 transcription from RNA polymerase I promoter ! parsing: GO:0006361 ! No parse for: GO:0006361 transcription initiation from RNA polymerase I promoter ! parsing: GO:0006363 ! No parse for: GO:0006363 termination of RNA polymerase I transcription ! parsing: GO:0006364 ! parse: GO:0006364 using "rRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000252]) [-2] ! no existing xp def ! def: "Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to rRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000252])] [Term] id: GO:0006364 ! rRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000252 ! rRNA synonym: "rRNA modification" EXACT [OBOL:automatic] synonym: "ribosomal RNA modification" EXACT [OBOL:automatic] synonym: "ribosomal RNA processing" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid modification" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006364: 1.53 ! parsing: GO:0006366 ! No parse for: GO:0006366 transcription from RNA polymerase II promoter ! parsing: GO:0006367 ! No parse for: GO:0006367 transcription initiation from RNA polymerase II promoter ! parsing: GO:0006369 ! No parse for: GO:0006369 termination of RNA polymerase II transcription ! parsing: GO:0006370 ! parse: GO:0006370 using "mRNA capping" => cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000234]) [-3] ! no existing xp def ! def: "Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript." ! PROPOSED: metabolic process that OBO_REL:results_in_connection_of cap and OBO_REL:results_in_connection_of mRNA [cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000234])] [Term] id: GO:0006370 ! mRNA capping intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_connection_of SO:0000581 ! cap intersection_of: OBO_REL:results_in_connection_of SO:0000234 ! mRNA synonym: "messenger RNA capping" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006370: 3.81 ! parsing: GO:0006376 ! No parse for: GO:0006376 mRNA splice site selection ! parsing: GO:0006378 ! parse: GO:0006378 using "mRNA polyadenylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=SO:0000610, OBO_REL:results_in_addition_to=SO:0000234]) [-3] ! no existing xp def ! def: "The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of polyA_sequence and OBO_REL:results_in_addition_to mRNA [cdef(GO:0008152, [OBO_REL:results_in_addition_of=SO:0000610, OBO_REL:results_in_addition_to=SO:0000234])] [Term] id: GO:0006378 ! mRNA polyadenylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of SO:0000610 ! polyA_sequence intersection_of: OBO_REL:results_in_addition_to SO:0000234 ! mRNA synonym: "messenger RNA polyadenylation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006378: 2.94 ! parsing: GO:0006379 ! parse: GO:0006379 using "mRNA cleavage" => cdef(GO:0043283, [OBO_REL:results_in_division_of=SO:0000234]) [-2] ! no existing xp def ! def: "Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner." ! PROPOSED: biopolymer metabolic process that OBO_REL:results_in_division_of mRNA [cdef(GO:0043283, [OBO_REL:results_in_division_of=SO:0000234])] [Term] id: GO:0006379 ! mRNA cleavage intersection_of: GO:0043283 ! biopolymer metabolic process intersection_of: OBO_REL:results_in_division_of SO:0000234 ! mRNA synonym: "messenger RNA cleavage" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006379: 1.52 ! parsing: GO:0006383 ! No parse for: GO:0006383 transcription from RNA polymerase III promoter ! parsing: GO:0006384 ! No parse for: GO:0006384 transcription initiation from RNA polymerase III promoter ! parsing: GO:0006386 ! No parse for: GO:0006386 termination of RNA polymerase III transcription ! parsing: GO:0006387 ! parse: GO:0006387 using "snRNA capping" => cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000274]) [-3] ! no existing xp def ! PROPOSED: metabolic process that OBO_REL:results_in_connection_of cap and OBO_REL:results_in_connection_of snRNA [cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000274])] [Term] id: GO:0006387 ! snRNA capping intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_connection_of SO:0000581 ! cap intersection_of: OBO_REL:results_in_connection_of SO:0000274 ! snRNA synonym: "small nuclear RNA capping" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006387: 1.54 ! parsing: GO:0006388 ! parse: GO:0006388 using "tRNA splicing" => cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000253])]) [-3] ! no existing xp def ! def: "Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons." ! PROPOSED: biopolymer metabolic process that OBO_REL:results_in_removal_of cdef(SO:0000001, [OBO_REL:part_of=SO:0000253]) [cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000253])])] [Term] id: GO:0006388 ! tRNA splicing intersection_of: GO:0043283 ! biopolymer metabolic process intersection_of: OBO_REL:results_in_removal_of _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000253___ ! seconds spent parsing GO:0006388: 1.63 ! parsing: GO:0006390 ! No parse for: GO:0006390 transcription from mitochondrial promoter ! parsing: GO:0006391 ! No parse for: GO:0006391 transcription initiation from mitochondrial promoter ! parsing: GO:0006393 ! No parse for: GO:0006393 termination of mitochondrial transcription ! parsing: GO:0006397 ! parse: GO:0006397 using "mRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000234]) [-2] ! no existing xp def ! def: "Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to mRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000234])] [Term] id: GO:0006397 ! mRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000234 ! mRNA synonym: "messenger RNA modification" EXACT [OBOL:automatic] synonym: "messenger RNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006397: 1.53 ! parsing: GO:0006399 ! parse: GO:0006399 using "tRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000253]) [-2] ! parse: GO:0006399 using "tRNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000253]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established." ! PROPOSED: metabolic process that OBO_REL:has_participant tRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000253])] [Term] id: GO:0006399 ! tRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000253 ! tRNA ! seconds spent parsing GO:0006399: 5.2 ! parsing: GO:0006400 ! parse: GO:0006400 using "tRNA editing" => cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(CHEBI:36976, [OBO_REL:part_of=SO:0000253])]) [-3] ! parse: GO:0006400 using "tRNA modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000253]) [-2] ! no existing xp def ! def: "The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to tRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000253])] [Term] id: GO:0006400 ! tRNA modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000253 ! tRNA ! seconds spent parsing GO:0006400: 3.17 ! parsing: GO:0006402 ! parse: GO:0006402 using "mRNA breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000234]) [-2] ! parse: GO:0006402 using "mRNA catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000234]) [-2] ! parse: GO:0006402 using "mRNA catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000234]) [-2] ! parse: GO:0006402 using "mRNA degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000234]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of mRNA [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000234])] [Term] id: GO:0006402 ! mRNA catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000234 ! mRNA synonym: "messenger RNA breakdown" EXACT [OBOL:automatic] synonym: "messenger RNA catabolic process" EXACT [OBOL:automatic] synonym: "messenger RNA catabolism" EXACT [OBOL:automatic] synonym: "messenger RNA degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006402: 10.37 ! parsing: GO:0006406 ! parse: GO:0006406 using "mRNA export from nucleus" => cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000234]) [-2] ! no existing xp def ! def: "The directed movement of mRNA from the nucleus to the cytoplasm." ! PROPOSED: nuclear export that OBO_REL:results_in_transport_of mRNA [cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000234])] [Term] id: GO:0006406 ! mRNA export from nucleus intersection_of: GO:0051168 ! nuclear export intersection_of: OBO_REL:results_in_transport_of SO:0000234 ! mRNA synonym: "messenger RNA export from nucleus" EXACT [OBOL:automatic] synonym: "messenger RNA nuclear export" EXACT [OBOL:automatic] synonym: "messenger RNA nucleus export" EXACT [OBOL:automatic] synonym: "messenger RNA substance nuclear export" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006406: 8.28 ! parsing: GO:0006407 ! parse: GO:0006407 using "rRNA export from nucleus" => cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000252]) [-2] ! no existing xp def ! def: "The directed movement of rRNA from the nucleus to the cytoplasm." ! PROPOSED: nuclear export that OBO_REL:results_in_transport_of rRNA [cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000252])] [Term] id: GO:0006407 ! rRNA export from nucleus intersection_of: GO:0051168 ! nuclear export intersection_of: OBO_REL:results_in_transport_of SO:0000252 ! rRNA synonym: "ribosomal RNA export from nucleus" EXACT [OBOL:automatic] synonym: "ribosomal RNA nuclear export" EXACT [OBOL:automatic] synonym: "ribosomal RNA nucleus export" EXACT [OBOL:automatic] synonym: "ribosomal RNA substance nuclear export" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid export from nucleus" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid nuclear export" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid nucleus export" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid substance nuclear export" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006407: 8.24 ! parsing: GO:0006408 ! parse: GO:0006408 using "snRNA export from nucleus" => cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000274]) [-2] ! no existing xp def ! def: "The directed movement of snRNA from the nucleus to the cytoplasm." ! PROPOSED: nuclear export that OBO_REL:results_in_transport_of snRNA [cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000274])] [Term] id: GO:0006408 ! snRNA export from nucleus intersection_of: GO:0051168 ! nuclear export intersection_of: OBO_REL:results_in_transport_of SO:0000274 ! snRNA synonym: "small nuclear RNA export from nucleus" EXACT [OBOL:automatic] synonym: "small nuclear RNA nuclear export" EXACT [OBOL:automatic] synonym: "small nuclear RNA nucleus export" EXACT [OBOL:automatic] synonym: "small nuclear RNA substance nuclear export" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006408: 8.24 ! parsing: GO:0006409 ! parse: GO:0006409 using "tRNA export from nucleus" => cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000253]) [-2] ! no existing xp def ! def: "The directed movement of tRNA from the nucleus to the cytoplasm." ! PROPOSED: nuclear export that OBO_REL:results_in_transport_of tRNA [cdef(GO:0051168, [OBO_REL:results_in_transport_of=SO:0000253])] [Term] id: GO:0006409 ! tRNA export from nucleus intersection_of: GO:0051168 ! nuclear export intersection_of: OBO_REL:results_in_transport_of SO:0000253 ! tRNA ! seconds spent parsing GO:0006409: 8.25 ! parsing: GO:0006410 ! parse: GO:0006410 using "reverse transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0001031]) [-2] ! no existing xp def ! def: "The synthesis of DNA on a template of RNA." ! PROPOSED: transcription that OBO_REL:results_in_formation_of reverse [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0001031])] [Term] id: GO:0006410 ! transcription, RNA-dependent intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0001031 ! reverse ! seconds spent parsing GO:0006410: 3.7 ! parsing: GO:0006418 ! No parse for: GO:0006418 tRNA aminoacylation for protein translation ! parsing: GO:0006419 ! No parse for: GO:0006419 alanyl-tRNA aminoacylation ! parsing: GO:0006420 ! No parse for: GO:0006420 arginyl-tRNA aminoacylation ! parsing: GO:0006421 ! No parse for: GO:0006421 asparaginyl-tRNA aminoacylation ! parsing: GO:0006422 ! No parse for: GO:0006422 aspartyl-tRNA aminoacylation ! parsing: GO:0006423 ! No parse for: GO:0006423 cysteinyl-tRNA aminoacylation ! parsing: GO:0006424 ! No parse for: GO:0006424 glutamyl-tRNA aminoacylation ! parsing: GO:0006425 ! No parse for: GO:0006425 glutaminyl-tRNA aminoacylation ! parsing: GO:0006426 ! No parse for: GO:0006426 glycyl-tRNA aminoacylation ! parsing: GO:0006427 ! No parse for: GO:0006427 histidyl-tRNA aminoacylation ! parsing: GO:0006428 ! No parse for: GO:0006428 isoleucyl-tRNA aminoacylation ! parsing: GO:0006429 ! No parse for: GO:0006429 leucyl-tRNA aminoacylation ! parsing: GO:0006430 ! No parse for: GO:0006430 lysyl-tRNA aminoacylation ! parsing: GO:0006431 ! No parse for: GO:0006431 methionyl-tRNA aminoacylation ! parsing: GO:0006432 ! No parse for: GO:0006432 phenylalanyl-tRNA aminoacylation ! parsing: GO:0006433 ! No parse for: GO:0006433 prolyl-tRNA aminoacylation ! parsing: GO:0006434 ! No parse for: GO:0006434 seryl-tRNA aminoacylation ! parsing: GO:0006435 ! No parse for: GO:0006435 threonyl-tRNA aminoacylation ! parsing: GO:0006436 ! No parse for: GO:0006436 tryptophanyl-tRNA aminoacylation ! parsing: GO:0006437 ! No parse for: GO:0006437 tyrosyl-tRNA aminoacylation ! parsing: GO:0006438 ! No parse for: GO:0006438 valyl-tRNA aminoacylation ! parsing: GO:0006465 ! parse: GO:0006465 using "signal peptide processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000418]) [-2] ! no existing xp def ! def: "The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to signal_peptide [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000418])] [Term] id: GO:0006465 ! signal peptide processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000418 ! signal_peptide synonym: "signal peptide coding sequence modification" EXACT [OBOL:automatic] synonym: "signal peptide coding sequence processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006465: 2.28 ! parsing: GO:0006478 ! No parse for: GO:0006478 peptidyl-tyrosine sulfation ! parsing: GO:0006488 ! No parse for: GO:0006488 dolichol-linked oligosaccharide biosynthetic process ! parsing: GO:0006490 ! No parse for: GO:0006490 oligosaccharide-lipid intermediate assembly ! parsing: GO:0006508 ! No parse for: GO:0006508 proteolysis ! parsing: GO:0006518 ! parse: GO:0006518 using "peptide metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:16670]) [-2] ! parse: GO:0006518 using "peptide metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001064]) [-2] ! parse: GO:0006518 using "peptide metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:16670]) [-2] ! parse: GO:0006518 using "peptide metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001064]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." ! PROPOSED: metabolic process that OBO_REL:has_participant active_peptide [cdef(GO:0008152, [OBO_REL:has_participant=SO:0001064])] [Term] id: GO:0006518 ! peptide metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0001064 ! active_peptide synonym: "active peptide metabolic process" EXACT [OBOL:automatic] synonym: "active peptide metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006518: 8.63 ! parsing: GO:0006519 ! No parse for: GO:0006519 amino acid and derivative metabolic process ! parsing: GO:0006520 ! parse: GO:0006520 using "amino acid metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:33709]) [-2] ! parse: GO:0006520 using "amino acid metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001237]) [-2] ! parse: GO:0006520 using "amino acid metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:33709]) [-2] ! parse: GO:0006520 using "amino acid metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001237]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents." ! PROPOSED: metabolic process that OBO_REL:has_participant amino_acid [cdef(GO:0008152, [OBO_REL:has_participant=SO:0001237])] [Term] id: GO:0006520 ! amino acid metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0001237 ! amino_acid ! seconds spent parsing GO:0006520: 11.84 ! parsing: GO:0006575 ! No parse for: GO:0006575 amino acid derivative metabolic process ! parsing: GO:0006609 ! No parse for: GO:0006609 mRNA-binding (hnRNP) protein import into nucleus ! parsing: GO:0006616 ! No parse for: GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation ! parsing: GO:0006617 ! No parse for: GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition ! parsing: GO:0006618 ! No parse for: GO:0006618 SRP-dependent cotranslational protein targeting to membrane, signal sequence processing ! parsing: GO:0006857 ! parse: GO:0006857 using "oligopeptide transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:25676]) [-2] ! no existing xp def ! def: "The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages." ! PROPOSED: transport that OBO_REL:results_in_transport_of oligopeptide [cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:25676])] [Term] id: GO:0006857 ! oligopeptide transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of CHEBI:25676 ! oligopeptide ! seconds spent parsing GO:0006857: 2.37 ! parsing: GO:0006865 ! parse: GO:0006865 using "amino acid transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:33709]) [-2] ! parse: GO:0006865 using "amino acid transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0001237]) [-2] ! no existing xp def ! def: "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of amino_acid [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0001237])] [Term] id: GO:0006865 ! amino acid transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0001237 ! amino_acid ! seconds spent parsing GO:0006865: 5.72 ! parsing: GO:0006915 ! No parse for: GO:0006915 apoptosis ! parsing: GO:0006963 ! Already have xp for: GO:0006963 positive regulation of antibacterial peptide biosynthetic process ! CURRENT : positive regulation of biological process that regulates antibacterial peptide biosynthetic process [cdef(GO:0048518, [regulates=GO:0002780])] ! parsing: GO:0006964 ! Already have xp for: GO:0006964 positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria ! CURRENT : positive regulation of biological process that regulates biosynthetic process of antibacterial peptides active against Gram-negative bacteria [cdef(GO:0048518, [regulates=GO:0002812])] ! parsing: GO:0006965 ! Already have xp for: GO:0006965 positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria ! CURRENT : positive regulation of biological process that regulates biosynthetic process of antibacterial peptides active against Gram-positive bacteria [cdef(GO:0048518, [regulates=GO:0002815])] ! parsing: GO:0006967 ! Already have xp for: GO:0006967 positive regulation of antifungal peptide biosynthetic process ! CURRENT : positive regulation of biological process that regulates antifungal peptide biosynthetic process [cdef(GO:0048518, [regulates=GO:0002783])] ! parsing: GO:0006990 ! No parse for: GO:0006990 positive regulation of gene-specific transcription involved in unfolded protein response ! parsing: GO:0006994 ! No parse for: GO:0006994 positive regulation of sterol regulatory element binding protein target gene transcription involved in sterol depletion response ! parsing: GO:0007004 ! No parse for: GO:0007004 telomere maintenance via telomerase ! parsing: GO:0007050 ! No parse for: GO:0007050 cell cycle arrest ! parsing: GO:0007059 ! No parse for: GO:0007059 chromosome segregation ! parsing: GO:0007072 ! No parse for: GO:0007072 positive regulation of transcription on exit from mitosis ! parsing: GO:0007073 ! No parse for: GO:0007073 positive regulation of transcription on exit from mitosis, from RNA polymerase I promoter ! parsing: GO:0007074 ! No parse for: GO:0007074 positive regulation of transcription on exit from mitosis, from RNA polymerase II promoter ! parsing: GO:0007075 ! No parse for: GO:0007075 positive regulation of transcription on exit from mitosis, from RNA polymerase III promoter ! parsing: GO:0007079 ! parse: GO:0007079 using "mitotic chromosome movement to spindle pole" => cdef(GO:0051305, [OBO_REL:part_of=GO:0007067]) [-2] ! parse: GO:0007079 using "mitotic chromosome movement towards spindle pole" => cdef(GO:0051305, [OBO_REL:part_of=GO:0007067]) [-2] ! no existing xp def ! def: "The cell cycle process whereby the directed movement of chromosomes from the center of the spindle towards the spindle poles occurs. This mediates by the shortening of microtubules attached to the chromosomes, during mitosis." ! PROPOSED: chromosome movement towards spindle pole that OBO_REL:part_of mitosis [cdef(GO:0051305, [OBO_REL:part_of=GO:0007067])] [Term] id: GO:0007079 ! mitotic chromosome movement towards spindle pole intersection_of: GO:0051305 ! chromosome movement towards spindle pole intersection_of: OBO_REL:part_of GO:0007067 ! mitosis synonym: "mitotic chromosome migration to spindle pole" EXACT [OBOL:automatic] ! seconds spent parsing GO:0007079: 12.08 ! parsing: GO:0007105 ! No parse for: GO:0007105 cytokinesis, site selection ! parsing: GO:0007108 ! No parse for: GO:0007108 cytokinesis, initiation of separation ! parsing: GO:0007129 ! No parse for: GO:0007129 synapsis ! parsing: GO:0007131 ! No parse for: GO:0007131 meiotic recombination ! parsing: GO:0007165 ! No parse for: GO:0007165 signal transduction ! parsing: GO:0007169 ! No parse for: GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway ! parsing: GO:0007171 ! No parse for: GO:0007171 activation of transmembrane receptor protein tyrosine kinase activity ! parsing: GO:0007172 ! No parse for: GO:0007172 signal complex assembly ! parsing: GO:0007178 ! No parse for: GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway ! parsing: GO:0007185 ! No parse for: GO:0007185 transmembrane receptor protein tyrosine phosphatase signaling pathway ! parsing: GO:0007221 ! No parse for: GO:0007221 positive regulation of transcription of Notch receptor target ! parsing: GO:0007227 ! No parse for: GO:0007227 signal transduction downstream of smoothened ! parsing: GO:0007228 ! No parse for: GO:0007228 positive regulation of hh target transcription factor activity ! parsing: GO:0007231 ! No parse for: GO:0007231 osmosensory signaling pathway ! parsing: GO:0007232 ! No parse for: GO:0007232 osmosensory signaling pathway via Sho1 osmosensor ! parsing: GO:0007234 ! No parse for: GO:0007234 osmosensory signaling pathway via two-component system ! parsing: GO:0007250 ! No parse for: GO:0007250 activation of NF-kappaB-inducing kinase activity ! parsing: GO:0007256 ! No parse for: GO:0007256 activation of JNKK activity ! parsing: GO:0007283 ! No parse for: GO:0007283 spermatogenesis ! parsing: GO:0007323 ! parse: GO:0007323 using "pheromone processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:26013]) [-2] ! no existing xp def ! def: "The generation of a mature, active peptide pheromone via processes unique to its processing and modification." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to pheromone [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:26013])] [Term] id: GO:0007323 ! peptide pheromone maturation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:26013 ! pheromone ! seconds spent parsing GO:0007323: 6.24 ! parsing: GO:0007329 ! No parse for: GO:0007329 positive regulation of transcription from RNA polymerase II promoter by pheromones ! parsing: GO:0007357 ! No parse for: GO:0007357 positive regulation of central gap gene transcription ! parsing: GO:0007360 ! No parse for: GO:0007360 positive regulation of posterior gap gene transcription ! parsing: GO:0007362 ! No parse for: GO:0007362 terminal region determination ! parsing: GO:0007363 ! No parse for: GO:0007363 positive regulation of terminal gap gene transcription ! parsing: GO:0007392 ! No parse for: GO:0007392 initiation of dorsal closure ! parsing: GO:0007430 ! No parse for: GO:0007430 terminal branching, open tracheal system ! parsing: GO:0007534 ! No parse for: GO:0007534 gene conversion at mating-type locus ! parsing: GO:0007535 ! No parse for: GO:0007535 donor selection ! parsing: GO:0008033 ! parse: GO:0008033 using "tRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000253]) [-2] ! no existing xp def ! def: "The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to tRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000253])] [Term] id: GO:0008033 ! tRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000253 ! tRNA synonym: "tRNA modification" EXACT [OBOL:automatic] ! seconds spent parsing GO:0008033: 1.53 ! parsing: GO:0008284 ! Already have xp for: GO:0008284 positive regulation of cell proliferation ! CURRENT : positive regulation of biological process that regulates cell proliferation [cdef(GO:0048518, [regulates=GO:0008283])] ! parsing: GO:0008286 ! No parse for: GO:0008286 insulin receptor signaling pathway ! parsing: GO:0008298 ! No parse for: GO:0008298 intracellular mRNA localization ! parsing: GO:0008306 ! No parse for: GO:0008306 associative learning ! parsing: GO:0008348 ! Already have xp for: GO:0008348 negative regulation of antimicrobial humoral response ! CURRENT : negative regulation of biological process that regulates antimicrobial humoral response [cdef(GO:0048519, [regulates=GO:0019730])] ! parsing: GO:0008380 ! parse: GO:0008380 using "RNA splicing" => cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000356])]) [-3] ! no existing xp def ! def: "The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA." ! PROPOSED: biopolymer metabolic process that OBO_REL:results_in_removal_of cdef(SO:0000001, [OBO_REL:part_of=SO:0000356]) [cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000356])])] [Term] id: GO:0008380 ! RNA splicing intersection_of: GO:0043283 ! biopolymer metabolic process intersection_of: OBO_REL:results_in_removal_of _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000356___ ! seconds spent parsing GO:0008380: 1.64 ! parsing: GO:0008612 ! No parse for: GO:0008612 peptidyl-lysine modification to hypusine ! parsing: GO:0008652 ! parse: GO:0008652 using "amino acid anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:33709]) [-2] ! parse: GO:0008652 using "amino acid anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237]) [-2] ! parse: GO:0008652 using "amino acid biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:33709]) [-2] ! parse: GO:0008652 using "amino acid biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237]) [-2] ! parse: GO:0008652 using "amino acid biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:33709]) [-2] ! parse: GO:0008652 using "amino acid biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237]) [-2] ! parse: GO:0008652 using "amino acid formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:33709]) [-2] ! parse: GO:0008652 using "amino acid formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237]) [-2] ! parse: GO:0008652 using "amino acid synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:33709]) [-2] ! parse: GO:0008652 using "amino acid synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of amino_acid [cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001237])] [Term] id: GO:0008652 ! amino acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0001237 ! amino_acid ! seconds spent parsing GO:0008652: 28.67 ! parsing: GO:0009048 ! No parse for: GO:0009048 dosage compensation, by inactivation of X chromosome ! parsing: GO:0009063 ! parse: GO:0009063 using "amino acid breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:33709]) [-2] ! parse: GO:0009063 using "amino acid breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001237]) [-2] ! parse: GO:0009063 using "amino acid catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:33709]) [-2] ! parse: GO:0009063 using "amino acid catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001237]) [-2] ! parse: GO:0009063 using "amino acid catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:33709]) [-2] ! parse: GO:0009063 using "amino acid catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001237]) [-2] ! parse: GO:0009063 using "amino acid degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:33709]) [-2] ! parse: GO:0009063 using "amino acid degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001237]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of amino_acid [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001237])] [Term] id: GO:0009063 ! amino acid catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0001237 ! amino_acid ! seconds spent parsing GO:0009063: 23.6 ! parsing: GO:0009252 ! parse: GO:0009252 using "peptidoglycan anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005]) [-2] ! parse: GO:0009252 using "peptidoglycan biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005]) [-2] ! parse: GO:0009252 using "peptidoglycan biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005]) [-2] ! parse: GO:0009252 using "peptidoglycan formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005]) [-2] ! parse: GO:0009252 using "peptidoglycan synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of peptidoglycan [cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:8005])] [Term] id: GO:0009252 ! peptidoglycan biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of CHEBI:8005 ! peptidoglycan synonym: "Peptidoglycan anabolism" EXACT [OBOL:automatic] synonym: "Peptidoglycan biosynthesis" EXACT [OBOL:automatic] synonym: "Peptidoglycan biosynthetic process" EXACT [OBOL:automatic] synonym: "Peptidoglycan formation" EXACT [OBOL:automatic] synonym: "Peptidoglycan synthesis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009252: 13.41 ! parsing: GO:0009253 ! parse: GO:0009253 using "peptidoglycan breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:8005]) [-2] ! parse: GO:0009253 using "peptidoglycan catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:8005]) [-2] ! parse: GO:0009253 using "peptidoglycan catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:8005]) [-2] ! parse: GO:0009253 using "peptidoglycan degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:8005]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of peptidoglycan [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:8005])] [Term] id: GO:0009253 ! peptidoglycan catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of CHEBI:8005 ! peptidoglycan synonym: "Peptidoglycan breakdown" EXACT [OBOL:automatic] synonym: "Peptidoglycan catabolic process" EXACT [OBOL:automatic] synonym: "Peptidoglycan catabolism" EXACT [OBOL:automatic] synonym: "Peptidoglycan degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009253: 11.38 ! parsing: GO:0009254 ! No parse for: GO:0009254 peptidoglycan turnover ! parsing: GO:0009271 ! No parse for: GO:0009271 phage shock ! parsing: GO:0009273 ! No parse for: GO:0009273 peptidoglycan-based cell wall biogenesis ! parsing: GO:0009292 ! No parse for: GO:0009292 genetic transfer ! parsing: GO:0009299 ! parse: GO:0009299 using "mRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000234]) [-2] ! no existing xp def ! def: "The synthesis of messenger RNA (mRNA) from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of mRNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000234])] [Term] id: GO:0009299 ! mRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000234 ! mRNA synonym: "messenger RNA transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009299: 2.52 ! parsing: GO:0009300 ! parse: GO:0009300 using "antisense RNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000644]) [-2] ! no existing xp def ! def: "The synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA." ! PROPOSED: transcription that OBO_REL:results_in_formation_of antisense_RNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000644])] [Term] id: GO:0009300 ! antisense RNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000644 ! antisense_RNA ! seconds spent parsing GO:0009300: 4.24 ! parsing: GO:0009301 ! parse: GO:0009301 using "snRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000274]) [-2] ! no existing xp def ! def: "The synthesis of small nuclear RNA (snRNA) from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of snRNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000274])] [Term] id: GO:0009301 ! snRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000274 ! snRNA synonym: "small nuclear RNA transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009301: 2.52 ! parsing: GO:0009302 ! parse: GO:0009302 using "snoRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000275]) [-2] ! no existing xp def ! def: "The synthesis of small nucleolar RNA (snoRNA) from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of snoRNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000275])] [Term] id: GO:0009302 ! snoRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000275 ! snoRNA synonym: "small nucleolar RNA transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009302: 2.5 ! parsing: GO:0009303 ! parse: GO:0009303 using "rRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000252]) [-2] ! no existing xp def ! def: "The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of rRNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000252])] [Term] id: GO:0009303 ! rRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000252 ! rRNA synonym: "ribosomal RNA transcription" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0009303: 2.51 ! parsing: GO:0009304 ! parse: GO:0009304 using "tRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000253]) [-2] ! no existing xp def ! def: "The synthesis of transfer RNA (tRNA) from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of tRNA [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000253])] [Term] id: GO:0009304 ! tRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000253 ! tRNA ! seconds spent parsing GO:0009304: 2.51 ! parsing: GO:0009311 ! parse: GO:0009311 using "oligosaccharide metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25679]) [-2] ! parse: GO:0009311 using "oligosaccharide metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25679]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages." ! PROPOSED: metabolic process that OBO_REL:has_participant oligosaccharide [cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25679])] [Term] id: GO:0009311 ! oligosaccharide metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant CHEBI:25679 ! oligosaccharide ! seconds spent parsing GO:0009311: 4.95 ! parsing: GO:0009312 ! parse: GO:0009312 using "oligosaccharide anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679]) [-2] ! parse: GO:0009312 using "oligosaccharide biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679]) [-2] ! parse: GO:0009312 using "oligosaccharide biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679]) [-2] ! parse: GO:0009312 using "oligosaccharide formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679]) [-2] ! parse: GO:0009312 using "oligosaccharide synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of oligosaccharide [cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25679])] [Term] id: GO:0009312 ! oligosaccharide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of CHEBI:25679 ! oligosaccharide ! seconds spent parsing GO:0009312: 11.89 ! parsing: GO:0009313 ! parse: GO:0009313 using "oligosaccharide breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25679]) [-2] ! parse: GO:0009313 using "oligosaccharide catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25679]) [-2] ! parse: GO:0009313 using "oligosaccharide catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25679]) [-2] ! parse: GO:0009313 using "oligosaccharide degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25679]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of oligosaccharide [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25679])] [Term] id: GO:0009313 ! oligosaccharide catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of CHEBI:25679 ! oligosaccharide ! seconds spent parsing GO:0009313: 9.88 ! parsing: GO:0009371 ! No parse for: GO:0009371 positive regulation of transcription by pheromones ! parsing: GO:0009789 ! Already have xp for: GO:0009789 positive regulation of abscisic acid mediated signaling ! CURRENT : positive regulation of biological process that regulates abscisic acid mediated signaling [cdef(GO:0048518, [regulates=GO:0009738])] ! parsing: GO:0009891 ! Already have xp for: GO:0009891 positive regulation of biosynthetic process ! CURRENT : positive regulation of biological process that regulates biosynthetic process [cdef(GO:0048518, [regulates=GO:0009058])] ! parsing: GO:0009893 ! Already have xp for: GO:0009893 positive regulation of metabolic process ! CURRENT : positive regulation of biological process that regulates metabolic process [cdef(GO:0048518, [regulates=GO:0008152])] ! parsing: GO:0009896 ! Already have xp for: GO:0009896 positive regulation of catabolic process ! CURRENT : positive regulation of biological process that regulates catabolic process [cdef(GO:0048518, [regulates=GO:0009056])] ! parsing: GO:0009911 ! Already have xp for: GO:0009911 positive regulation of flower development ! CURRENT : positive regulation of biological process that regulates flower development [cdef(GO:0048518, [regulates=GO:0009908])] ! parsing: GO:0009939 ! Already have xp for: GO:0009939 positive regulation of gibberellic acid mediated signaling ! CURRENT : positive regulation of biological process that regulates gibberellic acid mediated signaling [cdef(GO:0048518, [regulates=GO:0009740])] ! parsing: GO:0009958 ! No parse for: GO:0009958 positive gravitropism ! parsing: GO:0009963 ! Already have xp for: GO:0009963 positive regulation of flavonoid biosynthetic process ! CURRENT : positive regulation of biological process that regulates flavonoid biosynthetic process [cdef(GO:0048518, [regulates=GO:0009813])] ! parsing: GO:0009967 ! Already have xp for: GO:0009967 positive regulation of signal transduction ! CURRENT : positive regulation of biological process that regulates signal transduction [cdef(GO:0048518, [regulates=GO:0007165])] ! parsing: GO:0010030 ! Already have xp for: GO:0010030 positive regulation of seed germination ! CURRENT : positive regulation of biological process that regulates seed germination [cdef(GO:0048518, [regulates=GO:0009845])] ! parsing: GO:0010059 ! No parse for: GO:0010059 positive regulation of atrichoblast fate specification ! parsing: GO:0010063 ! No parse for: GO:0010063 positive regulation of trichoblast fate specification ! parsing: GO:0010116 ! Already have xp for: GO:0010116 positive regulation of abscisic acid biosynthetic process ! CURRENT : positive regulation of biological process that regulates abscisic acid biosynthetic process [cdef(GO:0048518, [regulates=GO:0009688])] ! parsing: GO:0010186 ! Already have xp for: GO:0010186 positive regulation of cellular defense response ! CURRENT : positive regulation of biological process that regulates cellular defense response [cdef(GO:0048518, [regulates=GO:0006968])] ! parsing: GO:0010220 ! Already have xp for: GO:0010220 positive regulation of vernalization response ! CURRENT : positive regulation of biological process that regulates vernalization response [cdef(GO:0048518, [regulates=GO:0010048])] ! parsing: GO:0010228 ! No parse for: GO:0010228 vegetative to reproductive phase transition ! parsing: GO:0010365 ! Already have xp for: GO:0010365 positive regulation of ethylene biosynthetic process ! CURRENT : positive regulation of biological process that regulates ethylene biosynthetic process [cdef(GO:0048518, [regulates=GO:0009693])] ! parsing: GO:0010372 ! Already have xp for: GO:0010372 positive regulation of gibberellin biosynthetic process ! CURRENT : positive regulation of biological process that regulates gibberellin biosynthetic process [cdef(GO:0048518, [regulates=GO:0009686])] ! parsing: GO:0010387 ! No parse for: GO:0010387 signalosome assembly ! parsing: GO:0010406 ! No parse for: GO:0010406 classical arabinogalactan protein metabolic process ! parsing: GO:0010455 ! No parse for: GO:0010455 positive regulation of cell fate commitment ! parsing: GO:0010460 ! No parse for: GO:0010460 positive regulation of heart rate ! parsing: GO:0010467 ! No parse for: GO:0010467 gene expression ! parsing: GO:0010505 ! No parse for: GO:0010505 positive regulation of cell cycle arrest in response to nitrogen starvation ! parsing: GO:0010508 ! No parse for: GO:0010508 positive regulation of autophagy ! parsing: GO:0010513 ! No parse for: GO:0010513 positive regulation of phosphatidylinositol biosynthetic process ! parsing: GO:0010518 ! No parse for: GO:0010518 positive regulation of phospholipase activity ! parsing: GO:0010524 ! No parse for: GO:0010524 positive regulation of calcium ion transport into cytosol ! parsing: GO:0010527 ! No parse for: GO:0010527 positive regulation of transposition, RNA-mediated ! parsing: GO:0010530 ! No parse for: GO:0010530 positive regulation of transposition ! parsing: GO:0010535 ! No parse for: GO:0010535 positive regulation of activation of JAK2 kinase activity ! parsing: GO:0010536 ! No parse for: GO:0010536 positive regulation of activation of Janus kinase activity ! parsing: GO:0010537 ! No parse for: GO:0010537 positive regulation of activation of JAK1 kinase activity ! parsing: GO:0010552 ! No parse for: GO:0010552 positive regulation of specific transcription from RNA polymerase II promoter ! parsing: GO:0010557 ! No parse for: GO:0010557 positive regulation of macromolecule biosynthetic process ! parsing: GO:0010560 ! No parse for: GO:0010560 positive regulation of glycoprotein biosynthetic process ! parsing: GO:0010562 ! No parse for: GO:0010562 positive regulation of phosphorus metabolic process ! parsing: GO:0014003 ! No parse for: GO:0014003 oligodendrocyte development ! parsing: GO:0014008 ! Already have xp for: GO:0014008 positive regulation of microglia differentiation ! CURRENT : positive regulation of biological process that regulates microglia differentiation [cdef(GO:0048518, [regulates=GO:0014004])] ! parsing: GO:0014015 ! Already have xp for: GO:0014015 positive regulation of gliogenesis ! CURRENT : positive regulation of biological process that regulates gliogenesis [cdef(GO:0048518, [regulates=GO:0042063])] ! parsing: GO:0014040 ! Already have xp for: GO:0014040 positive regulation of Schwann cell differentiation ! CURRENT : positive regulation of biological process that regulates Schwann cell differentiation [cdef(GO:0048518, [regulates=GO:0014037])] ! parsing: GO:0014042 ! Already have xp for: GO:0014042 positive regulation of neuron maturation ! CURRENT : positive regulation of biological process that regulates neuron maturation [cdef(GO:0048518, [regulates=GO:0042551])] ! parsing: GO:0014049 ! Already have xp for: GO:0014049 positive regulation of glutamate secretion ! CURRENT : positive regulation of biological process that regulates glutamate secretion [cdef(GO:0048518, [regulates=GO:0014047])] ! parsing: GO:0014054 ! Already have xp for: GO:0014054 positive regulation of gamma-aminobutyric acid secretion ! CURRENT : positive regulation of biological process that regulates gamma-aminobutyric acid secretion [cdef(GO:0048518, [regulates=GO:0014051])] ! parsing: GO:0014057 ! Already have xp for: GO:0014057 positive regulation of acetylcholine secretion ! CURRENT : positive regulation of biological process that regulates acetylcholine secretion [cdef(GO:0048518, [regulates=GO:0014055])] ! parsing: GO:0014064 ! Already have xp for: GO:0014064 positive regulation of serotonin secretion ! CURRENT : positive regulation of biological process that regulates serotonin secretion [cdef(GO:0048518, [regulates=GO:0001820])] ! parsing: GO:0014068 ! Already have xp for: GO:0014068 positive regulation of phosphoinositide 3-kinase cascade ! CURRENT : positive regulation of biological process that regulates phosphoinositide 3-kinase cascade [cdef(GO:0048518, [regulates=GO:0014065])] ! parsing: GO:0014709 ! No parse for: GO:0014709 positive regulation of somitomeric trunk muscle development ! parsing: GO:0014712 ! No parse for: GO:0014712 positive regulation of branchiomeric skeletal muscle development ! parsing: GO:0014718 ! No parse for: GO:0014718 positive regulation of satellite cell activation involved in skeletal muscle regeneration ! parsing: GO:0014727 ! No parse for: GO:0014727 positive regulation of extraocular skeletal muscle development ! parsing: GO:0014737 ! No parse for: GO:0014737 positive regulation of muscle atrophy ! parsing: GO:0014739 ! No parse for: GO:0014739 positive regulation of muscle hyperplasia ! parsing: GO:0014742 ! No parse for: GO:0014742 positive regulation of muscle hypertrophy ! parsing: GO:0014744 ! No parse for: GO:0014744 positive regulation of muscle adaptation ! parsing: GO:0014747 ! No parse for: GO:0014747 positive regulation of tonic skeletal muscle contraction ! parsing: GO:0014810 ! No parse for: GO:0014810 positive regulation of skeletal muscle contraction via regulation of the release of sequestered calcium ion ! parsing: GO:0014815 ! No parse for: GO:0014815 initiation of satellite cell activation by growth factor signalling, involved in skeletal muscle regeneration ! parsing: GO:0014858 ! No parse for: GO:0014858 positive regulation of skeletal muscle cell proliferation ! parsing: GO:0014883 ! No parse for: GO:0014883 transition between fast and slow fiber ! parsing: GO:0014886 ! No parse for: GO:0014886 transition between slow and fast fiber ! parsing: GO:0014911 ! No parse for: GO:0014911 positive regulation of smooth muscle cell migration ! parsing: GO:0014917 ! parse: GO:0014917 using "positive regulation of diuresis by pressure natriuresis" => cdef(GO:0003103, [OBO_REL:mediated_by=GO:0003095]) [-2] ! no existing xp def ! def: "The process by which pressure natriuresis increases the rate of diuresis." ! PROPOSED: positive regulation of diuresis that OBO_REL:mediated_by pressure natriuresis [cdef(GO:0003103, [OBO_REL:mediated_by=GO:0003095])] [Term] id: GO:0014917 ! positive regulation of diuresis by pressure natriuresis intersection_of: GO:0003103 ! positive regulation of diuresis intersection_of: OBO_REL:mediated_by GO:0003095 ! pressure natriuresis ! seconds spent parsing GO:0014917: 1.7 ! parsing: GO:0014918 ! parse: GO:0014918 using "positive regulation of natriuresis by pressure natriuresis" => cdef(GO:0003079, [OBO_REL:mediated_by=GO:0003095]) [-2] ! no existing xp def ! def: "The process whereby pressure natriuresis increases rate of natriuresis." ! PROPOSED: positive regulation of natriuresis that OBO_REL:mediated_by pressure natriuresis [cdef(GO:0003079, [OBO_REL:mediated_by=GO:0003095])] [Term] id: GO:0014918 ! positive regulation of natriuresis by pressure natriuresis intersection_of: GO:0003079 ! positive regulation of natriuresis intersection_of: OBO_REL:mediated_by GO:0003095 ! pressure natriuresis ! seconds spent parsing GO:0014918: 1.25 ! parsing: GO:0015772 ! parse: GO:0015772 using "oligosaccharide transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:25679]) [-2] ! no existing xp def ! def: "The directed movement of oligosaccharides into, out of, within or between cells. Oligosaccharides are molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages." ! PROPOSED: transport that OBO_REL:results_in_transport_of oligosaccharide [cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:25679])] [Term] id: GO:0015772 ! oligosaccharide transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of CHEBI:25679 ! oligosaccharide ! seconds spent parsing GO:0015772: 2.38 ! parsing: GO:0015833 ! parse: GO:0015833 using "peptide transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:16670]) [-2] ! parse: GO:0015833 using "peptide transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0001064]) [-2] ! no existing xp def ! def: "The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of active_peptide [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0001064])] [Term] id: GO:0015833 ! peptide transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0001064 ! active_peptide synonym: "active peptide transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0015833: 4.13 ! parsing: GO:0015834 ! parse: GO:0015834 using "peptidoglycan peptide transport" => cdef(GO:0015833, [OBO_REL:results_in_transport_of=CHEBI:8005]) [-2] ! no existing xp def ! def: "The directed movement of peptidoglycan peptides into, out of, within or between cells. Peptidoglycan peptides are the oligopeptides found in peptidoglycan networks which cross-link the polysaccharide chains." ! PROPOSED: peptide transport that OBO_REL:results_in_transport_of peptidoglycan [cdef(GO:0015833, [OBO_REL:results_in_transport_of=CHEBI:8005])] [Term] id: GO:0015834 ! peptidoglycan peptide transport intersection_of: GO:0015833 ! peptide transport intersection_of: OBO_REL:results_in_transport_of CHEBI:8005 ! peptidoglycan synonym: "Peptidoglycan peptide transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0015834: 5.86 ! parsing: GO:0015835 ! parse: GO:0015835 using "peptidoglycan transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:8005]) [-2] ! no existing xp def ! def: "The directed movement of peptidoglycans, a class of glycoconjugates found in bacterial cell walls, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of peptidoglycan [cdef(GO:0006810, [OBO_REL:results_in_transport_of=CHEBI:8005])] [Term] id: GO:0015835 ! peptidoglycan transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of CHEBI:8005 ! peptidoglycan synonym: "Peptidoglycan transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0015835: 3.14 ! parsing: GO:0015843 ! No parse for: GO:0015843 methylammonium transport ! parsing: GO:0016071 ! parse: GO:0016071 using "mRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000234]) [-2] ! parse: GO:0016071 using "mRNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000234]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes." ! PROPOSED: metabolic process that OBO_REL:has_participant mRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000234])] [Term] id: GO:0016071 ! mRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000234 ! mRNA synonym: "messenger RNA metabolic process" EXACT [OBOL:automatic] synonym: "messenger RNA metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016071: 5.22 ! parsing: GO:0016072 ! parse: GO:0016072 using "rRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000252]) [-2] ! parse: GO:0016072 using "rRNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000252]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes." ! PROPOSED: metabolic process that OBO_REL:has_participant rRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000252])] [Term] id: GO:0016072 ! rRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000252 ! rRNA synonym: "ribosomal RNA metabolic process" EXACT [OBOL:automatic] synonym: "ribosomal RNA metabolism" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid metabolic process" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016072: 5.22 ! parsing: GO:0016073 ! parse: GO:0016073 using "snRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000274]) [-2] ! parse: GO:0016073 using "snRNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000274]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving snRNA, small nuclear RNA, any of various low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein." ! PROPOSED: metabolic process that OBO_REL:has_participant snRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000274])] [Term] id: GO:0016073 ! snRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000274 ! snRNA synonym: "small nuclear RNA metabolic process" EXACT [OBOL:automatic] synonym: "small nuclear RNA metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016073: 5.22 ! parsing: GO:0016074 ! parse: GO:0016074 using "snoRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000275]) [-2] ! parse: GO:0016074 using "snoRNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000275]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA." ! PROPOSED: metabolic process that OBO_REL:has_participant snoRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000275])] [Term] id: GO:0016074 ! snoRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000275 ! snoRNA synonym: "small nucleolar RNA metabolic process" EXACT [OBOL:automatic] synonym: "small nucleolar RNA metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016074: 5.2 ! parsing: GO:0016075 ! parse: GO:0016075 using "rRNA breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000252]) [-2] ! parse: GO:0016075 using "rRNA catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000252]) [-2] ! parse: GO:0016075 using "rRNA catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000252]) [-2] ! parse: GO:0016075 using "rRNA degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000252]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of rRNA [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000252])] [Term] id: GO:0016075 ! rRNA catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000252 ! rRNA synonym: "ribosomal RNA breakdown" EXACT [OBOL:automatic] synonym: "ribosomal RNA catabolic process" EXACT [OBOL:automatic] synonym: "ribosomal RNA catabolism" EXACT [OBOL:automatic] synonym: "ribosomal RNA degradation" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid breakdown" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid catabolic process" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid catabolism" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016075: 10.4 ! parsing: GO:0016076 ! parse: GO:0016076 using "snRNA breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000274]) [-2] ! parse: GO:0016076 using "snRNA catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000274]) [-2] ! parse: GO:0016076 using "snRNA catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000274]) [-2] ! parse: GO:0016076 using "snRNA degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000274]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of snRNA, small nuclear RNA, low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of snRNA [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000274])] [Term] id: GO:0016076 ! snRNA catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000274 ! snRNA synonym: "small nuclear RNA breakdown" EXACT [OBOL:automatic] synonym: "small nuclear RNA catabolic process" EXACT [OBOL:automatic] synonym: "small nuclear RNA catabolism" EXACT [OBOL:automatic] synonym: "small nuclear RNA degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016076: 10.4 ! parsing: GO:0016077 ! parse: GO:0016077 using "snoRNA breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000275]) [-2] ! parse: GO:0016077 using "snoRNA catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000275]) [-2] ! parse: GO:0016077 using "snoRNA catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000275]) [-2] ! parse: GO:0016077 using "snoRNA degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000275]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of snoRNA [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000275])] [Term] id: GO:0016077 ! snoRNA catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000275 ! snoRNA synonym: "small nucleolar RNA breakdown" EXACT [OBOL:automatic] synonym: "small nucleolar RNA catabolic process" EXACT [OBOL:automatic] synonym: "small nucleolar RNA catabolism" EXACT [OBOL:automatic] synonym: "small nucleolar RNA degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016077: 10.38 ! parsing: GO:0016078 ! parse: GO:0016078 using "tRNA breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000253]) [-2] ! parse: GO:0016078 using "tRNA catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000253]) [-2] ! parse: GO:0016078 using "tRNA catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000253]) [-2] ! parse: GO:0016078 using "tRNA degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000253]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of tRNA [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000253])] [Term] id: GO:0016078 ! tRNA catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000253 ! tRNA ! seconds spent parsing GO:0016078: 10.4 ! parsing: GO:0016180 ! parse: GO:0016180 using "snRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000274]) [-2] ! no existing xp def ! def: "Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to snRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000274])] [Term] id: GO:0016180 ! snRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000274 ! snRNA synonym: "small nuclear RNA modification" EXACT [OBOL:automatic] synonym: "small nuclear RNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016180: 1.54 ! parsing: GO:0016233 ! parse: GO:0016233 using "telomere capping" => cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000624]) [-3] ! no existing xp def ! def: "A process by which telomeres are protected from degradation and fusion, thereby ensuring chromosome stability by protecting the ends from both degradation and from being recognized as damaged DNA. May be mediated by specific single- or double-stranded telomeric DNA binding proteins." ! PROPOSED: metabolic process that OBO_REL:results_in_connection_of cap and OBO_REL:results_in_connection_of telomere [cdef(GO:0008152, [OBO_REL:results_in_connection_of=SO:0000581, OBO_REL:results_in_connection_of=SO:0000624])] [Term] id: GO:0016233 ! telomere capping intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_connection_of SO:0000581 ! cap intersection_of: OBO_REL:results_in_connection_of SO:0000624 ! telomere synonym: "telomeric DNA capping" EXACT [OBOL:automatic] synonym: "telomeric sequence capping" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016233: 2.96 ! parsing: GO:0016239 ! Already have xp for: GO:0016239 positive regulation of macroautophagy ! CURRENT : positive regulation of biological process that regulates macroautophagy [cdef(GO:0048518, [regulates=GO:0016236])] ! parsing: GO:0016344 ! parse: GO:0016344 using "meiotic chromosome movement to spindle pole" => cdef(GO:0051305, [OBO_REL:part_of=GO:0007126]) [-2] ! parse: GO:0016344 using "meiotic chromosome movement towards spindle pole" => cdef(GO:0051305, [OBO_REL:part_of=GO:0007126]) [-2] ! no existing xp def ! def: "The cell cycle process whereby the directed movement of chromosomes from the center of the spindle towards the spindle poles takes place, mediated by the shortening of microtubules attached to the chromosomes. This occurs during meiosis." ! PROPOSED: chromosome movement towards spindle pole that OBO_REL:part_of meiosis [cdef(GO:0051305, [OBO_REL:part_of=GO:0007126])] [Term] id: GO:0016344 ! meiotic chromosome movement towards spindle pole intersection_of: GO:0051305 ! chromosome movement towards spindle pole intersection_of: OBO_REL:part_of GO:0007126 ! meiosis synonym: "meiotic chromosome migration to spindle pole" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016344: 6.33 ! parsing: GO:0016345 ! No parse for: GO:0016345 female meiotic chromosome movement towards spindle pole ! parsing: GO:0016346 ! No parse for: GO:0016346 male meiotic chromosome movement towards spindle pole ! parsing: GO:0016458 ! No parse for: GO:0016458 gene silencing ! parsing: GO:0016486 ! parse: GO:0016486 using "peptide hormone processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25905]) [-2] ! no existing xp def ! def: "The generation of a mature peptide hormone by posttranslational processing of a prohormone." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptide hormone [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25905])] [Term] id: GO:0016486 ! peptide hormone processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25905 ! peptide hormone ! seconds spent parsing GO:0016486: 4.86 ! parsing: GO:0016539 ! No parse for: GO:0016539 intein-mediated protein splicing ! parsing: GO:0016550 ! No parse for: GO:0016550 insertion or deletion editing ! parsing: GO:0016553 ! No parse for: GO:0016553 base conversion or substitution editing ! parsing: GO:0016556 ! parse: GO:0016556 using "mRNA editing" => cdef(GO:0043283, [OBO_REL:results_in_change_to=cdef(CHEBI:36976, [OBO_REL:part_of=SO:0000234])]) [-3] ! parse: GO:0016556 using "mRNA modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000234]) [-2] ! no existing xp def ! def: "The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to mRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000234])] [Term] id: GO:0016556 ! mRNA modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000234 ! mRNA synonym: "mRNA processing" EXACT [OBOL:automatic] synonym: "messenger RNA modification" EXACT [OBOL:automatic] synonym: "messenger RNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016556: 3.2 ! parsing: GO:0017179 ! No parse for: GO:0017179 peptidyl-diphthine metabolic process ! parsing: GO:0017180 ! No parse for: GO:0017180 peptidyl-diphthine biosynthetic process from peptidyl-histidine ! parsing: GO:0017181 ! No parse for: GO:0017181 peptidyl-diphthine catabolic process ! parsing: GO:0017182 ! No parse for: GO:0017182 peptidyl-diphthamide metabolic process ! parsing: GO:0017183 ! No parse for: GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine ! parsing: GO:0017184 ! No parse for: GO:0017184 peptidyl-diphthamide catabolic process ! parsing: GO:0017185 ! No parse for: GO:0017185 peptidyl-lysine hydroxylation ! parsing: GO:0017186 ! No parse for: GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase ! parsing: GO:0017187 ! No parse for: GO:0017187 peptidyl-glutamic acid carboxylation ! parsing: GO:0018003 ! No parse for: GO:0018003 peptidyl-lysine N6-acetylation ! parsing: GO:0018020 ! No parse for: GO:0018020 peptidyl-glutamic acid methylation ! parsing: GO:0018021 ! parse: GO:0018021 using "peptidyl-histidine methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25922]) [-3] ! no existing xp def ! def: "The methylation of peptidyl-L-histidine to form peptidyl-L-1'-methyl-L-histidine (otherwise known as tau-methylhistidine, tele-methylhistidine) or peptidyl-L-3'-methyl-L-histidine (otherwise known as pi-methylhistidine, pros-methylhistidine)." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to peptidyl-histidine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25922])] [Term] id: GO:0018021 ! peptidyl-histidine methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25922 ! peptidyl-histidine ! seconds spent parsing GO:0018021: 2.62 ! parsing: GO:0018022 ! No parse for: GO:0018022 peptidyl-lysine methylation ! parsing: GO:0018023 ! No parse for: GO:0018023 peptidyl-lysine tri-methylation ! parsing: GO:0018026 ! No parse for: GO:0018026 peptidyl-lysine mono-methylation ! parsing: GO:0018027 ! No parse for: GO:0018027 peptidyl-lysine di-methylation ! parsing: GO:0018028 ! No parse for: GO:0018028 peptidyl-lysine myristoylation ! parsing: GO:0018029 ! No parse for: GO:0018029 peptidyl-lysine palmitoylation ! parsing: GO:0018054 ! No parse for: GO:0018054 peptidyl-lysine biotinylation ! parsing: GO:0018055 ! No parse for: GO:0018055 peptidyl-lysine lipoylation ! parsing: GO:0018057 ! No parse for: GO:0018057 peptidyl-lysine oxidation ! parsing: GO:0018061 ! No parse for: GO:0018061 peptidyl-L-3-phenyllactic acid biosynthetic process from peptidyl-phenylalanine ! parsing: GO:0018062 ! No parse for: GO:0018062 peptidyl-tryptophan succinylation ! parsing: GO:0018067 ! No parse for: GO:0018067 peptidyl-L-3',4'-dihydroxyphenylalanine biosynthetic process from peptidyl-tyrosine ! parsing: GO:0018068 ! No parse for: GO:0018068 peptidyl-L-2',4',5'-topaquinone biosynthetic process from peptidyl-tyrosine ! parsing: GO:0018069 ! No parse for: GO:0018069 peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone ! parsing: GO:0018070 ! No parse for: GO:0018070 peptidyl-serine phosphopantetheinylation ! parsing: GO:0018072 ! No parse for: GO:0018072 peptidyl-L-glutamyl 5-glycerylphosphorylethanolamine biosynthetic process from peptidyl-glutamic acid ! parsing: GO:0018074 ! No parse for: GO:0018074 peptidyl-histidine bromination ! parsing: GO:0018075 ! No parse for: GO:0018075 peptidyl-phenylalanine bromination ! parsing: GO:0018078 ! No parse for: GO:0018078 peptidyl-thyronine iodination ! parsing: GO:0018080 ! No parse for: GO:0018080 peptidyl-tryptophan bromination ! parsing: GO:0018081 ! No parse for: GO:0018081 peptide cross-linking via lanthionine or 3-methyl-lanthionine ! parsing: GO:0018082 ! No parse for: GO:0018082 peptidyl-(Z)-dehydrobutyrine biosynthetic process from peptidyl-threonine ! parsing: GO:0018083 ! No parse for: GO:0018083 peptidyl-L-3-oxoalanine biosynthetic process from peptidyl-cysteine or peptidyl-serine ! parsing: GO:0018084 ! No parse for: GO:0018084 peptidyl-lactic acid biosynthetic process from peptidyl-serine ! parsing: GO:0018085 ! No parse for: GO:0018085 peptidyl-L-amino acid racemization ! parsing: GO:0018091 ! No parse for: GO:0018091 peptidyl-asparagine racemization ! parsing: GO:0018096 ! parse: GO:0018096 using "peptide cross-linking via S-(2-aminovinyl)-D-cysteine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22010]) [-2] ! no existing xp def ! def: "The posttranslational synthesis of (S,Z)-S-(2-aminovinyl)cysteine forming an intra-polypeptide cross-link between serine and cysteine." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler S-(2-aminovinyl)-D-cysteine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22010])] [Term] id: GO:0018096 ! peptide cross-linking via S-(2-aminovinyl)-D-cysteine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:22010 ! S-(2-aminovinyl)-D-cysteine synonym: "peptide cross-linking via S-( 2-aminovinyl) -D-cysteine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018096: 2.52 ! parsing: GO:0018101 ! No parse for: GO:0018101 peptidyl-citrulline biosynthetic process from peptidyl-arginine ! parsing: GO:0018102 ! No parse for: GO:0018102 peptidyl-arginine hydroxylation to peptidyl-4-hydroxy-L-arginine ! parsing: GO:0018104 ! No parse for: GO:0018104 peptidoglycan-protein cross-linking ! parsing: GO:0018105 ! parse: GO:0018105 using "peptidyl-serine phosphorylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25930]) [-3] ! no existing xp def ! def: "The posttranslational phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of phosphate group and OBO_REL:results_in_addition_to peptidyl-serine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25930])] [Term] id: GO:0018105 ! peptidyl-serine phosphorylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32958 ! phosphate group intersection_of: OBO_REL:results_in_addition_to CHEBI:25930 ! peptidyl-serine ! seconds spent parsing GO:0018105: 2.61 ! parsing: GO:0018106 ! parse: GO:0018106 using "peptidyl-histidine phosphorylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25922]) [-3] ! no existing xp def ! def: "The posttranslational phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine)." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of phosphate group and OBO_REL:results_in_addition_to peptidyl-histidine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25922])] [Term] id: GO:0018106 ! peptidyl-histidine phosphorylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32958 ! phosphate group intersection_of: OBO_REL:results_in_addition_to CHEBI:25922 ! peptidyl-histidine ! seconds spent parsing GO:0018106: 2.63 ! parsing: GO:0018107 ! parse: GO:0018107 using "peptidyl-threonine phosphorylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25931]) [-3] ! no existing xp def ! def: "The posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of phosphate group and OBO_REL:results_in_addition_to peptidyl-threonine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25931])] [Term] id: GO:0018107 ! peptidyl-threonine phosphorylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32958 ! phosphate group intersection_of: OBO_REL:results_in_addition_to CHEBI:25931 ! peptidyl-threonine ! seconds spent parsing GO:0018107: 2.62 ! parsing: GO:0018108 ! parse: GO:0018108 using "peptidyl-tyrosine phosphorylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25933]) [-3] ! no existing xp def ! def: "The posttranslational phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of phosphate group and OBO_REL:results_in_addition_to peptidyl-tyrosine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25933])] [Term] id: GO:0018108 ! peptidyl-tyrosine phosphorylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32958 ! phosphate group intersection_of: OBO_REL:results_in_addition_to CHEBI:25933 ! peptidyl-tyrosine ! seconds spent parsing GO:0018108: 2.61 ! parsing: GO:0018109 ! No parse for: GO:0018109 peptidyl-arginine phosphorylation ! parsing: GO:0018115 ! No parse for: GO:0018115 peptidyl-S-diphytanylglycerol diether-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018116 ! No parse for: GO:0018116 peptidyl-lysine adenylylation ! parsing: GO:0018118 ! No parse for: GO:0018118 peptidyl-L-cysteine glutathione disulfide biosynthetic process from peptidyl-cysteine ! parsing: GO:0018119 ! No parse for: GO:0018119 peptidyl-cysteine S-nitrosylation ! parsing: GO:0018120 ! No parse for: GO:0018120 peptidyl-arginine ADP-ribosylation ! parsing: GO:0018122 ! No parse for: GO:0018122 peptidyl-asparagine ADP-ribosylation ! parsing: GO:0018123 ! No parse for: GO:0018123 peptidyl-cysteine ADP-ribosylation ! parsing: GO:0018124 ! parse: GO:0018124 using "peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20489]) [-2] ! no existing xp def ! def: "The cross-linking of the epsilon-amino group of a peptidyl-lysine with peptidyl-topaquinone, a modified tyrosine residue." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 5'-(N6-L-lysine)-L-topaquinone [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20489])] [Term] id: GO:0018124 ! peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:20489 ! 5'-(N6-L-lysine)-L-topaquinone synonym: "peptide cross-linking via 5 '-( N 6-L-lysine) -L-topaquinone" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018124: 2.52 ! parsing: GO:0018125 ! parse: GO:0018125 using "peptidyl-cysteine methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25917]) [-3] ! no existing xp def ! def: "The methylation of peptidyl-cysteine to form peptidyl-S-methyl-L-cysteine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to peptidyl-cysteine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25917])] [Term] id: GO:0018125 ! peptidyl-cysteine methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25917 ! peptidyl-cysteine ! seconds spent parsing GO:0018125: 2.63 ! parsing: GO:0018132 ! parse: GO:0018132 using "peptide cross-linking via L-cysteine oxazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21267]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl cysteine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-cysteine oxazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21267])] [Term] id: GO:0018132 ! peptide cross-linking via L-cysteine oxazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21267 ! L-cysteine oxazolecarboxylic acid ! seconds spent parsing GO:0018132: 2.52 ! parsing: GO:0018133 ! parse: GO:0018133 using "peptide cross-linking via L-cysteine oxazolinecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21268]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl cysteine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-cysteine oxazolinecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21268])] [Term] id: GO:0018133 ! peptide cross-linking via L-cysteine oxazolinecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21268 ! L-cysteine oxazolinecarboxylic acid ! seconds spent parsing GO:0018133: 2.53 ! parsing: GO:0018134 ! parse: GO:0018134 using "peptide cross-linking via glycine oxazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:24374]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl glycine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler glycine oxazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:24374])] [Term] id: GO:0018134 ! peptide cross-linking via glycine oxazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:24374 ! glycine oxazolecarboxylic acid ! seconds spent parsing GO:0018134: 2.54 ! parsing: GO:0018137 ! parse: GO:0018137 using "peptide cross-linking via glycine thiazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:24375]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl glycine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler glycine thiazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:24375])] [Term] id: GO:0018137 ! peptide cross-linking via glycine thiazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:24375 ! glycine thiazolecarboxylic acid ! seconds spent parsing GO:0018137: 2.52 ! parsing: GO:0018138 ! parse: GO:0018138 using "peptide cross-linking via L-serine thiazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21390]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl serine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-serine thiazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21390])] [Term] id: GO:0018138 ! peptide cross-linking via L-serine thiazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21390 ! L-serine thiazolecarboxylic acid ! seconds spent parsing GO:0018138: 2.52 ! parsing: GO:0018139 ! parse: GO:0018139 using "peptide cross-linking via L-phenylalanine thiazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21372]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl phenylalanine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-phenylalanine thiazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21372])] [Term] id: GO:0018139 ! peptide cross-linking via L-phenylalanine thiazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21372 ! L-phenylalanine thiazolecarboxylic acid ! seconds spent parsing GO:0018139: 2.54 ! parsing: GO:0018140 ! parse: GO:0018140 using "peptide cross-linking via L-cysteine thiazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21272]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl cysteine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-cysteine thiazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21272])] [Term] id: GO:0018140 ! peptide cross-linking via L-cysteine thiazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21272 ! L-cysteine thiazolecarboxylic acid ! seconds spent parsing GO:0018140: 2.52 ! parsing: GO:0018141 ! parse: GO:0018141 using "peptide cross-linking via L-lysine thiazolecarboxylic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21355]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of a peptidyl cysteine-peptidyl lysine cross-link by the condensation of a cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-lysine thiazolecarboxylic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21355])] [Term] id: GO:0018141 ! peptide cross-linking via L-lysine thiazolecarboxylic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21355 ! L-lysine thiazolecarboxylic acid ! seconds spent parsing GO:0018141: 2.52 ! parsing: GO:0018149 ! No parse for: GO:0018149 peptide cross-linking ! parsing: GO:0018150 ! No parse for: GO:0018150 peptide cross-linking via 3-(3'-L-histidyl)-L-tyrosine ! parsing: GO:0018151 ! No parse for: GO:0018151 peptide cross-linking via L-histidyl-L-tyrosine ! parsing: GO:0018152 ! No parse for: GO:0018152 peptide cross-linking via 3'-(1'-L-histidyl)-L-tyrosine ! parsing: GO:0018154 ! No parse for: GO:0018154 peptide cross-linking via (2R,6R)-lanthionine ! parsing: GO:0018155 ! No parse for: GO:0018155 peptide cross-linking via sn-(2S,6R)-lanthionine ! parsing: GO:0018156 ! No parse for: GO:0018156 peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine ! parsing: GO:0018157 ! No parse for: GO:0018157 peptide cross-linking via an oxazole or thiazole ! parsing: GO:0018159 ! parse: GO:0018159 using "peptidyl-methionine oxidation" => cdef(GO:0008152, [OBO_REL:results_in_removal_of=CHEBI:10545, OBO_REL:results_in_removal_from=CHEBI:25925]) [-3] ! no existing xp def ! def: "The oxidation of peptidyl-L-methionine to peptidyl-L-methionine sulfone." ! PROPOSED: metabolic process that OBO_REL:results_in_removal_of electron and OBO_REL:results_in_removal_from peptidyl-methionine [cdef(GO:0008152, [OBO_REL:results_in_removal_of=CHEBI:10545, OBO_REL:results_in_removal_from=CHEBI:25925])] [Term] id: GO:0018159 ! peptidyl-methionine oxidation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_removal_of CHEBI:10545 ! electron intersection_of: OBO_REL:results_in_removal_from CHEBI:25925 ! peptidyl-methionine ! seconds spent parsing GO:0018159: 1.93 ! parsing: GO:0018160 ! No parse for: GO:0018160 peptidyl-pyrromethane cofactor linkage ! parsing: GO:0018162 ! parse: GO:0018162 using "peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22009]) [-2] ! no existing xp def ! def: "The formation of a cross-link between peptidyl-cysteine and peptidyl-threonine via the formation of S-(2-aminovinyl)-3-methyl-D-cysteine." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler S-(2-aminovinyl)-3-methyl-D-cysteine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22009])] [Term] id: GO:0018162 ! peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:22009 ! S-(2-aminovinyl)-3-methyl-D-cysteine synonym: "peptide cross-linking via S-( 2-aminovinyl) -3-methyl-D-cysteine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018162: 2.53 ! parsing: GO:0018165 ! No parse for: GO:0018165 peptidyl-tyrosine uridylylation ! parsing: GO:0018171 ! parse: GO:0018171 using "peptidyl-cysteine oxidation" => cdef(GO:0008152, [OBO_REL:results_in_removal_of=CHEBI:10545, OBO_REL:results_in_removal_from=CHEBI:25917]) [-3] ! no existing xp def ! def: "The oxidation of peptidyl-cysteine to peptidyl-L-cysteine sulfinic acid or peptidyl-L-cysteine sulfenic acid." ! PROPOSED: metabolic process that OBO_REL:results_in_removal_of electron and OBO_REL:results_in_removal_from peptidyl-cysteine [cdef(GO:0008152, [OBO_REL:results_in_removal_of=CHEBI:10545, OBO_REL:results_in_removal_from=CHEBI:25917])] [Term] id: GO:0018171 ! peptidyl-cysteine oxidation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_removal_of CHEBI:10545 ! electron intersection_of: OBO_REL:results_in_removal_from CHEBI:25917 ! peptidyl-cysteine ! seconds spent parsing GO:0018171: 1.92 ! parsing: GO:0018172 ! No parse for: GO:0018172 peptidyl-L-3',4',5'-trihydroxyphenylalanine biosynthetic process from peptidyl-tyrosine ! parsing: GO:0018173 ! parse: GO:0018173 using "peptidyl-1-thioglycine anabolism from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0018173 using "peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0018173 using "peptidyl-1-thioglycine formation from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0018173 using "peptidyl-1-thioglycine synthesis from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of peptidyl-1-thioglycine from other compounds, including peptidyl-glycine." ! PROPOSED: cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]) that OBO_REL:has_input peptidyl-glycine [cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25909]), [OBO_REL:has_input=CHEBI:25921])] [Term] id: GO:0018173 ! peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine intersection_of: _:cdef__GO_0009058_____OBO_REL_results_in_formation_of___CHEBI_25909___ intersection_of: OBO_REL:has_input CHEBI:25921 ! peptidyl-glycine ! seconds spent parsing GO:0018173: 9.64 ! parsing: GO:0018178 ! No parse for: GO:0018178 peptidyl-threonine adenylylation ! parsing: GO:0018179 ! No parse for: GO:0018179 peptidyl-cysteine desulfurization ! parsing: GO:0018181 ! No parse for: GO:0018181 peptidyl-arginine C5-methylation ! parsing: GO:0018188 ! No parse for: GO:0018188 peptidyl-proline di-hydroxylation ! parsing: GO:0018191 ! No parse for: GO:0018191 peptidyl-serine octanoylation ! parsing: GO:0018193 ! parse: GO:0018193 using "peptidyl-amino acid modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25914]) [-2] ! no existing xp def ! def: "The alteration of an amino acid residue in a peptide." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-amino acid [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25914])] [Term] id: GO:0018193 ! peptidyl-amino acid modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25914 ! peptidyl-amino acid ! seconds spent parsing GO:0018193: 1.52 ! parsing: GO:0018194 ! No parse for: GO:0018194 peptidyl-alanine modification ! parsing: GO:0018195 ! No parse for: GO:0018195 peptidyl-arginine modification ! parsing: GO:0018196 ! parse: GO:0018196 using "peptidyl-asparagine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25915]) [-2] ! no existing xp def ! def: "The modification of peptidyl-asparagine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-asparagine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25915])] [Term] id: GO:0018196 ! peptidyl-asparagine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25915 ! peptidyl-asparagine ! seconds spent parsing GO:0018196: 1.53 ! parsing: GO:0018197 ! No parse for: GO:0018197 peptidyl-aspartic acid modification ! parsing: GO:0018198 ! parse: GO:0018198 using "peptidyl-cysteine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25917]) [-2] ! no existing xp def ! def: "The modification of peptidyl-cysteine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-cysteine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25917])] [Term] id: GO:0018198 ! peptidyl-cysteine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25917 ! peptidyl-cysteine ! seconds spent parsing GO:0018198: 1.52 ! parsing: GO:0018199 ! parse: GO:0018199 using "peptidyl-glutamine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25919]) [-2] ! no existing xp def ! def: "The modification of peptidyl-glutamine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-glutamine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25919])] [Term] id: GO:0018199 ! peptidyl-glutamine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25919 ! peptidyl-glutamine ! seconds spent parsing GO:0018199: 1.52 ! parsing: GO:0018200 ! No parse for: GO:0018200 peptidyl-glutamic acid modification ! parsing: GO:0018201 ! parse: GO:0018201 using "peptidyl-glycine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25921]) [-2] ! no existing xp def ! def: "The modification of peptidyl-glycine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-glycine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25921])] [Term] id: GO:0018201 ! peptidyl-glycine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25921 ! peptidyl-glycine ! seconds spent parsing GO:0018201: 1.52 ! parsing: GO:0018202 ! parse: GO:0018202 using "peptidyl-histidine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25922]) [-2] ! no existing xp def ! def: "The modification of peptidyl-histidine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-histidine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25922])] [Term] id: GO:0018202 ! peptidyl-histidine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25922 ! peptidyl-histidine ! seconds spent parsing GO:0018202: 1.54 ! parsing: GO:0018203 ! parse: GO:0018203 using "peptidyl-isoleucine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25923]) [-2] ! no existing xp def ! def: "The modification of peptidyl-isoleucine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-isoleucine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25923])] [Term] id: GO:0018203 ! peptidyl-isoleucine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25923 ! peptidyl-isoleucine ! seconds spent parsing GO:0018203: 1.52 ! parsing: GO:0018204 ! parse: GO:0018204 using "peptidyl-leucine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25924]) [-2] ! no existing xp def ! def: "The modification of peptidyl-leucine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-leucine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25924])] [Term] id: GO:0018204 ! peptidyl-leucine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25924 ! peptidyl-leucine ! seconds spent parsing GO:0018204: 1.52 ! parsing: GO:0018205 ! No parse for: GO:0018205 peptidyl-lysine modification ! parsing: GO:0018206 ! parse: GO:0018206 using "peptidyl-methionine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25925]) [-2] ! no existing xp def ! def: "The modification of peptidyl-methionine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-methionine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25925])] [Term] id: GO:0018206 ! peptidyl-methionine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25925 ! peptidyl-methionine ! seconds spent parsing GO:0018206: 1.52 ! parsing: GO:0018207 ! parse: GO:0018207 using "peptidyl-phenylalanine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25926]) [-2] ! no existing xp def ! def: "The modification of peptidyl-phenylalanine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-phenylalanine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25926])] [Term] id: GO:0018207 ! peptidyl-phenylalanine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25926 ! peptidyl-phenylalanine ! seconds spent parsing GO:0018207: 1.53 ! parsing: GO:0018208 ! parse: GO:0018208 using "peptidyl-proline modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25929]) [-2] ! no existing xp def ! def: "The modification of peptidyl-proline." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-proline [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25929])] [Term] id: GO:0018208 ! peptidyl-proline modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25929 ! peptidyl-proline ! seconds spent parsing GO:0018208: 1.52 ! parsing: GO:0018209 ! parse: GO:0018209 using "peptidyl-serine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25930]) [-2] ! no existing xp def ! def: "The modification of peptidyl-serine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-serine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25930])] [Term] id: GO:0018209 ! peptidyl-serine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25930 ! peptidyl-serine ! seconds spent parsing GO:0018209: 1.52 ! parsing: GO:0018210 ! parse: GO:0018210 using "peptidyl-threonine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25931]) [-2] ! no existing xp def ! def: "The modification of peptidyl-threonine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-threonine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25931])] [Term] id: GO:0018210 ! peptidyl-threonine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25931 ! peptidyl-threonine ! seconds spent parsing GO:0018210: 1.52 ! parsing: GO:0018211 ! parse: GO:0018211 using "peptidyl-tryptophan modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25932]) [-2] ! no existing xp def ! def: "The chemical alteration of a tryptophan residue in a peptide." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-tryptophan [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25932])] [Term] id: GO:0018211 ! peptidyl-tryptophan modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25932 ! peptidyl-tryptophan ! seconds spent parsing GO:0018211: 1.54 ! parsing: GO:0018212 ! parse: GO:0018212 using "peptidyl-tyrosine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25933]) [-2] ! no existing xp def ! def: "The modification of peptidyl-tyrosine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-tyrosine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25933])] [Term] id: GO:0018212 ! peptidyl-tyrosine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25933 ! peptidyl-tyrosine ! seconds spent parsing GO:0018212: 1.52 ! parsing: GO:0018213 ! parse: GO:0018213 using "peptidyl-valine modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25934]) [-2] ! no existing xp def ! def: "The modification of peptidyl-valine." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to peptidyl-valine [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:25934])] [Term] id: GO:0018213 ! peptidyl-valine modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:25934 ! peptidyl-valine ! seconds spent parsing GO:0018213: 1.52 ! parsing: GO:0018216 ! No parse for: GO:0018216 peptidyl-arginine methylation ! parsing: GO:0018217 ! No parse for: GO:0018217 peptidyl-aspartic acid phosphorylation ! parsing: GO:0018218 ! parse: GO:0018218 using "peptidyl-cysteine phosphorylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25917]) [-3] ! no existing xp def ! def: "The phosphorylation of peptidyl-cysteine to form peptidyl-S-phospho-L-cysteine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of phosphate group and OBO_REL:results_in_addition_to peptidyl-cysteine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32958, OBO_REL:results_in_addition_to=CHEBI:25917])] [Term] id: GO:0018218 ! peptidyl-cysteine phosphorylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32958 ! phosphate group intersection_of: OBO_REL:results_in_addition_to CHEBI:25917 ! peptidyl-cysteine ! seconds spent parsing GO:0018218: 2.64 ! parsing: GO:0018219 ! No parse for: GO:0018219 peptidyl-cysteine S-acetylation ! parsing: GO:0018220 ! No parse for: GO:0018220 peptidyl-threonine palmitoylation ! parsing: GO:0018221 ! No parse for: GO:0018221 peptidyl-serine palmitoylation ! parsing: GO:0018222 ! No parse for: GO:0018222 peptidyl-L-cysteine methyl disulfide biosynthetic process from peptidyl-cysteine ! parsing: GO:0018226 ! No parse for: GO:0018226 peptidyl-S-farnesyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018227 ! No parse for: GO:0018227 peptidyl-S-12-hydroxyfarnesyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018228 ! No parse for: GO:0018228 peptidyl-S-geranylgeranyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018229 ! No parse for: GO:0018229 peptidyl-L-cysteine methyl ester biosynthetic process from peptidyl-cysteine ! parsing: GO:0018230 ! No parse for: GO:0018230 peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018231 ! No parse for: GO:0018231 peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0018232 ! parse: GO:0018232 using "peptide cross-linking via S-(L-isoglutamyl)-L-cysteine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22021]) [-2] ! no existing xp def ! def: "The posttranslation modification of peptidyl-glutamine and peptidyl-cysteine to form a S-(L-isoglutamyl)-L-cysteine protein cross-link." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler S-(L-isoglutamyl)-L-cysteine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22021])] [Term] id: GO:0018232 ! peptide cross-linking via S-(L-isoglutamyl)-L-cysteine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:22021 ! S-(L-isoglutamyl)-L-cysteine synonym: "peptide cross-linking via S-( L-isoglutamyl) -L-cysteine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018232: 2.52 ! parsing: GO:0018233 ! parse: GO:0018233 using "peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19225]) [-2] ! no existing xp def ! def: "The posttranslation modification of peptidyl-histidine and peptidyl-cysteine to form a 2'-(S-L-cysteinyl)-L-histidine protein cross-link." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 2'-(S-L-cysteinyl)-L-histidine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19225])] [Term] id: GO:0018233 ! peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:19225 ! 2'-(S-L-cysteinyl)-L-histidine synonym: "peptide cross-linking via 2 '-( S-L-cysteinyl) -L-histidine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018233: 2.52 ! parsing: GO:0018234 ! parse: GO:0018234 using "peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19839]) [-2] ! no existing xp def ! def: "The posttranslational thioether cross-linking of a cysteine residue to a tyrosine residue to form 3'-(S-L-cysteinyl)-L-tyrosine, found in galactose oxidase." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 3'-(S-L-cysteinyl)-L-tyrosine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19839])] [Term] id: GO:0018234 ! peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:19839 ! 3'-(S-L-cysteinyl)-L-tyrosine synonym: "peptide cross-linking via 3 '-( S-L-cysteinyl) -L-tyrosine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018234: 2.54 ! parsing: GO:0018235 ! No parse for: GO:0018235 peptidyl-lysine carboxylation ! parsing: GO:0018238 ! No parse for: GO:0018238 peptidyl-lysine carboxyethylation ! parsing: GO:0018250 ! No parse for: GO:0018250 peptidyl-dehydroalanine biosynthetic process from peptidyl-tyrosine or peptidyl-serine ! parsing: GO:0018251 ! No parse for: GO:0018251 peptidyl-tyrosine dehydrogenation ! parsing: GO:0018252 ! parse: GO:0018252 using "peptide cross-linking via L-seryl-5-imidazolinone glycine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21393]) [-2] ! no existing xp def ! def: "The formation of the green fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a serine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-seryl-5-imidazolinone glycine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21393])] [Term] id: GO:0018252 ! peptide cross-linking via L-seryl-5-imidazolinone glycine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21393 ! L-seryl-5-imidazolinone glycine ! seconds spent parsing GO:0018252: 4.92 ! parsing: GO:0018253 ! No parse for: GO:0018253 peptide cross-linking via 5-imidazolinone glycine ! parsing: GO:0018254 ! No parse for: GO:0018254 peptidyl-tyrosine adenylylation ! parsing: GO:0018255 ! parse: GO:0018255 using "peptide cross-linking via S-glycyl-L-cysteine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22050]) [-2] ! no existing xp def ! def: "The formation of S-(peptidyl-glycyl)-peptidyl-cysteine cross-links by the formation of a thiolester between cysteine and the carboxy-terminal glycine of ubiquitin and other proteins." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler S-glycyl-L-cysteine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:22050])] [Term] id: GO:0018255 ! peptide cross-linking via S-glycyl-L-cysteine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:22050 ! S-glycyl-L-cysteine ! seconds spent parsing GO:0018255: 2.53 ! parsing: GO:0018257 ! No parse for: GO:0018257 peptidyl-lysine formylation ! parsing: GO:0018261 ! No parse for: GO:0018261 peptidyl-lysine guanylylation ! parsing: GO:0018274 ! parse: GO:0018274 using "peptide cross-linking via L-lysinoalanine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21356]) [-2] ! no existing xp def ! def: "The posttranslational modification of peptidyl-lysine and peptidyl-serine to form a (2Xi,9S)-L-lysinoalanine cross-link." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-lysinoalanine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21356])] [Term] id: GO:0018274 ! peptide cross-linking via L-lysinoalanine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21356 ! L-lysinoalanine ! seconds spent parsing GO:0018274: 2.54 ! parsing: GO:0018275 ! No parse for: GO:0018275 N-terminal peptidyl-cysteine acetylation ! parsing: GO:0018282 ! No parse for: GO:0018282 metal incorporation into metallo-sulfur cluster ! parsing: GO:0018311 ! No parse for: GO:0018311 peptidyl-N4-hydroxymethyl-L-asparagine biosynthetic process from peptidyl-asparagine ! parsing: GO:0018312 ! No parse for: GO:0018312 peptidyl-serine ADP-ribosylation ! parsing: GO:0018313 ! No parse for: GO:0018313 peptide cross-linking via L-alanyl-5-imidazolinone glycine ! parsing: GO:0018316 ! parse: GO:0018316 using "peptide cross-linking via L-cystine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:16283]) [-2] ! no existing xp def ! def: "The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler L-cystine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:16283])] [Term] id: GO:0018316 ! peptide cross-linking via L-cystine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:16283 ! L-cystine ! seconds spent parsing GO:0018316: 2.54 ! parsing: GO:0018336 ! No parse for: GO:0018336 peptidyl-tyrosine hydroxylation ! parsing: GO:0018339 ! No parse for: GO:0018339 peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid ! parsing: GO:0018340 ! No parse for: GO:0018340 peptidyl-O-(sn-1-glycerophosphoryl)-L-serine biosynthetic process from peptidyl-serine ! parsing: GO:0018341 ! No parse for: GO:0018341 peptidyl-N6-pyruvic acid 2-iminyl-L-lysine biosynthetic process ! parsing: GO:0018351 ! No parse for: GO:0018351 peptidyl-cysteine esterification ! parsing: GO:0018354 ! parse: GO:0018354 using "peptidyl-pyrromethane cofactor linkage via dipyrrolylmethanemethyl-L-cysteine" => cdef(GO:0018160, [OBO_REL:has_enabler=CHEBI:23842]) [-2] ! no existing xp def ! PROPOSED: peptidyl-pyrromethane cofactor linkage that OBO_REL:has_enabler dipyrrolylmethanemethyl-L-cysteine [cdef(GO:0018160, [OBO_REL:has_enabler=CHEBI:23842])] [Term] id: GO:0018354 ! peptidyl-pyrromethane cofactor linkage via dipyrrolylmethanemethyl-L-cysteine intersection_of: GO:0018160 ! peptidyl-pyrromethane cofactor linkage intersection_of: OBO_REL:has_enabler CHEBI:23842 ! dipyrrolylmethanemethyl-L-cysteine ! seconds spent parsing GO:0018354: 1.26 ! parsing: GO:0018361 ! No parse for: GO:0018361 peptidyl-glutamine 2-methylation ! parsing: GO:0018364 ! parse: GO:0018364 using "peptidyl-glutamine methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25919]) [-3] ! no existing xp def ! def: "The addition of a methyl group to a glutamine residue in a protein." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to peptidyl-glutamine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25919])] [Term] id: GO:0018364 ! peptidyl-glutamine methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25919 ! peptidyl-glutamine ! seconds spent parsing GO:0018364: 2.62 ! parsing: GO:0018376 ! No parse for: GO:0018376 peptidyl-asparagine hydroxylation to form L-erythro-beta-hydroxyasparagine ! parsing: GO:0018390 ! No parse for: GO:0018390 peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from peptidyl-glutamic acid or peptidyl-glutamine ! parsing: GO:0018394 ! No parse for: GO:0018394 peptidyl-lysine acetylation ! parsing: GO:0018395 ! No parse for: GO:0018395 peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine ! parsing: GO:0018396 ! No parse for: GO:0018396 peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine ! parsing: GO:0018397 ! No parse for: GO:0018397 peptidyl-phenylalanine bromination to L-2'-bromophenylalanine ! parsing: GO:0018398 ! No parse for: GO:0018398 peptidyl-phenylalanine bromination to L-3'-bromophenylalanine ! parsing: GO:0018399 ! No parse for: GO:0018399 peptidyl-phenylalanine bromination to L-4'-bromophenylalanine ! parsing: GO:0018400 ! No parse for: GO:0018400 peptidyl-proline hydroxylation to 3-hydroxy-L-proline ! parsing: GO:0018401 ! No parse for: GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline ! parsing: GO:0018407 ! No parse for: GO:0018407 peptidyl-thyronine iodination to form 3',3'',5'-triiodo-L-thyronine ! parsing: GO:0018408 ! No parse for: GO:0018408 peptidyl-thyronine iodination to form 3',3'',5',5''-tetraiodo-L-thyronine ! parsing: GO:0018409 ! No parse for: GO:0018409 peptide or protein amino-terminal blocking ! parsing: GO:0018410 ! No parse for: GO:0018410 peptide or protein carboxyl-terminal blocking ! parsing: GO:0018413 ! No parse for: GO:0018413 peptidyl-serine O-glucuronidation ! parsing: GO:0018420 ! parse: GO:0018420 using "peptide cross-linking via N6-(L-isoaspartyl)-L-lysine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21862]) [-2] ! no existing xp def ! def: "The formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler N6-(L-isoaspartyl)-L-lysine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:21862])] [Term] id: GO:0018420 ! peptide cross-linking via N6-(L-isoaspartyl)-L-lysine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21862 ! N6-(L-isoaspartyl)-L-lysine synonym: "peptide cross-linking via N 6-( L-isoaspartyl) -L-lysine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0018420: 2.53 ! parsing: GO:0018424 ! No parse for: GO:0018424 peptidyl-glutamic acid poly-ADP-ribosylation ! parsing: GO:0018439 ! No parse for: GO:0018439 peptidyl-leucine esterification ! parsing: GO:0018442 ! No parse for: GO:0018442 peptidyl-glutamic acid esterification ! parsing: GO:0018533 ! parse: GO:0018533 using "peptidyl-cysteine acetylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=CHEBI:25917]) [-3] ! no existing xp def ! def: "The acetylation of peptidyl-cysteine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of acetyl group and OBO_REL:results_in_addition_to peptidyl-cysteine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=CHEBI:25917])] [Term] id: GO:0018533 ! peptidyl-cysteine acetylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:40574 ! acetyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25917 ! peptidyl-cysteine ! seconds spent parsing GO:0018533: 1.65 ! parsing: GO:0019047 ! No parse for: GO:0019047 provirus integration ! parsing: GO:0019059 ! No parse for: GO:0019059 initiation of viral infection ! parsing: GO:0019066 ! No parse for: GO:0019066 translocation of virus into host cell ! parsing: GO:0019121 ! parse: GO:0019121 using "peptidoglycan-protein cross-linking via N6-mureinyl-L-lysine" => cdef(GO:0018104, [OBO_REL:has_enabler=CHEBI:21893]) [-2] ! no existing xp def ! def: "The process of linking a protein to peptidoglycan via the epsilon amino group of lysine to the diaminopimelic acid of the peptidoglycan." ! PROPOSED: peptidoglycan-protein cross-linking that OBO_REL:has_enabler N6-mureinyl-L-lysine [cdef(GO:0018104, [OBO_REL:has_enabler=CHEBI:21893])] [Term] id: GO:0019121 ! peptidoglycan-protein cross-linking via N6-mureinyl-L-lysine intersection_of: GO:0018104 ! peptidoglycan-protein cross-linking intersection_of: OBO_REL:has_enabler CHEBI:21893 ! N6-mureinyl-L-lysine synonym: "peptidoglycan-protein cross-linking via N 6-mureinyl-L-lysine" EXACT [OBOL:automatic] ! seconds spent parsing GO:0019121: 1.88 ! parsing: GO:0019122 ! No parse for: GO:0019122 peptidyl-D-alanine racemization ! parsing: GO:0019123 ! No parse for: GO:0019123 peptidyl-methionine racemization ! parsing: GO:0019124 ! No parse for: GO:0019124 peptidyl-isoleucine racemization ! parsing: GO:0019125 ! No parse for: GO:0019125 peptidyl-phenylalanine racemization ! parsing: GO:0019126 ! No parse for: GO:0019126 peptidyl-serine racemization ! parsing: GO:0019128 ! No parse for: GO:0019128 peptidyl-tryptophan racemization ! parsing: GO:0019129 ! No parse for: GO:0019129 peptidyl-leucine racemization ! parsing: GO:0019228 ! No parse for: GO:0019228 regulation of action potential in neuron ! parsing: GO:0019511 ! No parse for: GO:0019511 peptidyl-proline hydroxylation ! parsing: GO:0019665 ! No parse for: GO:0019665 anaerobic amino acid catabolic process ! parsing: GO:0019701 ! No parse for: GO:0019701 peptidyl-arginine N5-methylation ! parsing: GO:0019704 ! No parse for: GO:0019704 peptidyl-S-myristoyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0019708 ! parse: GO:0019708 using "peptidyl-glycine cholesteryl ester anabolism from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0019708 using "peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0019708 using "peptidyl-glycine cholesteryl ester formation from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! parse: GO:0019708 using "peptidyl-glycine cholesteryl ester synthesis from peptidyl-glycine" => cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]), [OBO_REL:has_input=CHEBI:25921]) [-4] ! no existing xp def ! def: "The synthesis of peptidyl-glycine cholest-5-en-3-beta-ol ester at the carboxy-terminus of autolytically cleaved proteins." ! PROPOSED: cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]) that OBO_REL:has_input peptidyl-glycine [cdef(cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25920]), [OBO_REL:has_input=CHEBI:25921])] [Term] id: GO:0019708 ! peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine intersection_of: _:cdef__GO_0009058_____OBO_REL_results_in_formation_of___CHEBI_25920___ intersection_of: OBO_REL:has_input CHEBI:25921 ! peptidyl-glycine ! seconds spent parsing GO:0019708: 12.21 ! parsing: GO:0019710 ! parse: GO:0019710 using "peptidyl-asparagine methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25915]) [-3] ! no existing xp def ! def: "The methylation of peptidyl-asparagine to form peptidyl-N4-methyl-L-asparagine or peptidyl-N4,N4-dimethyl-L-asparagine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to peptidyl-asparagine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=CHEBI:25915])] [Term] id: GO:0019710 ! peptidyl-asparagine methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25915 ! peptidyl-asparagine ! seconds spent parsing GO:0019710: 2.62 ! parsing: GO:0019711 ! No parse for: GO:0019711 peptidyl-beta-carboxyaspartic acid biosynthetic process from peptidyl-aspartic acid ! parsing: GO:0019712 ! No parse for: GO:0019712 peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from glutamic acid ! parsing: GO:0019713 ! No parse for: GO:0019713 peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from glutamine ! parsing: GO:0019714 ! No parse for: GO:0019714 peptidyl-glutamine esterification ! parsing: GO:0019715 ! No parse for: GO:0019715 peptidyl-aspartic acid hydroxylation to form L-erythro-beta-hydroxyaspartic acid ! parsing: GO:0019728 ! No parse for: GO:0019728 peptidyl-allysine oxidation to 2-aminoadipic acid ! parsing: GO:0019729 ! parse: GO:0019729 using "peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19663]) [-2] ! no existing xp def ! def: "The formation of the fluorescent protein FP583 chromophore cross-link from the alpha-carboxyl carbon of residue n, a glutamine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 2-imino-glutaminyl-5-imidazolinone glycine [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19663])] [Term] id: GO:0019729 ! peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:19663 ! 2-imino-glutaminyl-5-imidazolinone glycine ! seconds spent parsing GO:0019729: 4.95 ! parsing: GO:0019736 ! No parse for: GO:0019736 peptidyl-sarcosine incorporation ! parsing: GO:0019800 ! No parse for: GO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan ! parsing: GO:0019803 ! No parse for: GO:0019803 peptidyl-aspartic acid carboxylation ! parsing: GO:0019879 ! No parse for: GO:0019879 peptidyl-thyronine biosynthetic process from peptidyl-tyrosine ! parsing: GO:0019916 ! No parse for: GO:0019916 peptidyl-D-alanine racemization, direct ! parsing: GO:0019917 ! No parse for: GO:0019917 peptidyl-D-alanine racemization via peptidyl-L-serine ! parsing: GO:0019918 ! No parse for: GO:0019918 peptidyl-arginine methylation, to symmetrical-dimethyl arginine ! parsing: GO:0019919 ! No parse for: GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine ! parsing: GO:0019920 ! No parse for: GO:0019920 peptidyl-1-thioglycine biosynthetic process, internal ! parsing: GO:0019921 ! No parse for: GO:0019921 peptidyl-1-thioglycine biosynthetic process, carboxy-terminal ! parsing: GO:0019926 ! No parse for: GO:0019926 peptidyl-tryptophan oxidation to tryptophyl quinone ! parsing: GO:0019927 ! parse: GO:0019927 using "peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20252]) [-2] ! no existing xp def ! def: "The posttranslational cross-linking of a cysteine residue to tryptophyl quinone to form 4'-(S-L-cysteinyl)-L-tryptophyl quinone, a cofactor found at the active site of amine dehydrogenase." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 4'-(S-L-cysteinyl)-L-tryptophyl quinone [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20252])] [Term] id: GO:0019927 ! peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:20252 ! 4'-(S-L-cysteinyl)-L-tryptophyl quinone synonym: "peptide cross-linking via 4 '-( S-L-cysteinyl) -L-tryptophyl quinone" EXACT [OBOL:automatic] ! seconds spent parsing GO:0019927: 2.54 ! parsing: GO:0019928 ! parse: GO:0019928 using "peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19938]) [-2] ! no existing xp def ! def: "The posttranslational cross-linking of a cysteine residue to an aspartic acid residue to form 3-(S-L-cysteinyl)-L-aspartic acid." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 3-(S-L-cysteinyl)-L-aspartic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:19938])] [Term] id: GO:0019928 ! peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:19938 ! 3-(S-L-cysteinyl)-L-aspartic acid synonym: "peptide cross-linking via 3-( S-L-cysteinyl) -L-aspartic acid" EXACT [OBOL:automatic] ! seconds spent parsing GO:0019928: 2.53 ! parsing: GO:0019929 ! parse: GO:0019929 using "peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid" => cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20293]) [-2] ! no existing xp def ! def: "The posttranslational cross-linking of a cysteine residue to a glutamic acid residue to form 4-(S-L-cysteinyl)-L-glutamic acid." ! PROPOSED: peptide cross-linking that OBO_REL:has_enabler 4-(S-L-cysteinyl)-L-glutamic acid [cdef(GO:0018149, [OBO_REL:has_enabler=CHEBI:20293])] [Term] id: GO:0019929 ! peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid intersection_of: GO:0018149 ! peptide cross-linking intersection_of: OBO_REL:has_enabler CHEBI:20293 ! 4-(S-L-cysteinyl)-L-glutamic acid synonym: "peptide cross-linking via 4-( S-L-cysteinyl) -L-glutamic acid" EXACT [OBOL:automatic] ! seconds spent parsing GO:0019929: 2.53 ! parsing: GO:0019938 ! No parse for: GO:0019938 peptide cross-linking via N6-(L-isoaspartyl)-L-lysine, presumed catalytic ! parsing: GO:0019939 ! No parse for: GO:0019939 peptidyl-S-palmitoleyl-L-cysteine biosynthetic process from peptidyl-cysteine ! parsing: GO:0021565 ! No parse for: GO:0021565 accessory nerve development ! parsing: GO:0021606 ! No parse for: GO:0021606 accessory nerve maturation ! parsing: GO:0021607 ! No parse for: GO:0021607 accessory nerve morphogenesis ! parsing: GO:0021608 ! No parse for: GO:0021608 accessory nerve formation ! parsing: GO:0021609 ! No parse for: GO:0021609 accessory nerve structural organization ! parsing: GO:0021778 ! No parse for: GO:0021778 oligodendrocyte cell fate specification ! parsing: GO:0021779 ! No parse for: GO:0021779 oligodendrocyte cell fate commitment ! parsing: GO:0021806 ! No parse for: GO:0021806 initiation of movement involved in cerebral cortex radial glia guided migration ! parsing: GO:0021823 ! No parse for: GO:0021823 cerebral cortex tangential migration using cell-cell interactions ! parsing: GO:0021829 ! No parse for: GO:0021829 oligodendrocyte cell migration from the subpallium to the cortex ! parsing: GO:0021872 ! No parse for: GO:0021872 generation of neurons in the forebrain ! parsing: GO:0021940 ! Already have xp for: GO:0021940 positive regulation of granule cell precursor proliferation ! CURRENT : positive regulation of biological process that regulates granule cell precursor proliferation [cdef(GO:0048518, [regulates=GO:0021930])] ! parsing: GO:0021945 ! No parse for: GO:0021945 positive regulation of granule cell migration by calcium ! parsing: GO:0021993 ! No parse for: GO:0021993 initiation of neural tube closure ! parsing: GO:0022409 ! Already have xp for: GO:0022409 positive regulation of cell-cell adhesion ! CURRENT : positive regulation of biological process that regulates cell-cell adhesion [cdef(GO:0048518, [regulates=GO:0016337])] ! parsing: GO:0022619 ! No parse for: GO:0022619 generative cell differentiation ! parsing: GO:0030001 ! parse: GO:0030001 using "metal ion transport" => cdef(GO:0006811, [OBO_REL:results_in_transport_of=CHEBI:33521]) [-2] ! no existing xp def ! def: "The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells." ! PROPOSED: ion transport that OBO_REL:results_in_transport_of metal [cdef(GO:0006811, [OBO_REL:results_in_transport_of=CHEBI:33521])] [Term] id: GO:0030001 ! metal ion transport intersection_of: GO:0006811 ! ion transport intersection_of: OBO_REL:results_in_transport_of CHEBI:33521 ! metal synonym: "metals ion transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030001: 3.37 ! parsing: GO:0030070 ! parse: GO:0030070 using "insulin processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:5931]) [-2] ! no existing xp def ! def: "The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to insulin [cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:5931])] [Term] id: GO:0030070 ! insulin processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to CHEBI:5931 ! insulin ! seconds spent parsing GO:0030070: 1.53 ! parsing: GO:0030072 ! parse: GO:0030072 using "peptide hormone secretion" => cdef(GO:0046879, [OBO_REL:results_in_release_of=CHEBI:16670]) [-2] ! parse: GO:0030072 using "peptide hormone secretion" => cdef(GO:0046879, [OBO_REL:results_in_release_of=SO:0001064]) [-2] ! parse: GO:0030072 using "peptide hormone secretion" => cdef(GO:0046903, [OBO_REL:results_in_release_of=CHEBI:25905]) [-2] ! no existing xp def ! def: "The regulated release of a peptide hormone from secretory granules." ! PROPOSED: secretion that OBO_REL:results_in_release_of peptide hormone [cdef(GO:0046903, [OBO_REL:results_in_release_of=CHEBI:25905])] [Term] id: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion intersection_of: OBO_REL:results_in_release_of CHEBI:25905 ! peptide hormone ! seconds spent parsing GO:0030072: 7.82 ! parsing: GO:0030073 ! parse: GO:0030073 using "insulin secretion" => cdef(GO:0046903, [OBO_REL:results_in_release_of=CHEBI:5931]) [-2] ! no existing xp def ! def: "The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin." ! PROPOSED: secretion that OBO_REL:results_in_release_of insulin [cdef(GO:0046903, [OBO_REL:results_in_release_of=CHEBI:5931])] [Term] id: GO:0030073 ! insulin secretion intersection_of: GO:0046903 ! secretion intersection_of: OBO_REL:results_in_release_of CHEBI:5931 ! insulin ! seconds spent parsing GO:0030073: 2.39 ! parsing: GO:0030146 ! No parse for: GO:0030146 diuresis ! parsing: GO:0030177 ! Already have xp for: GO:0030177 positive regulation of Wnt receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates Wnt receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0016055])] ! parsing: GO:0030194 ! Already have xp for: GO:0030194 positive regulation of blood coagulation ! CURRENT : positive regulation of biological process that regulates blood coagulation [cdef(GO:0048518, [regulates=GO:0007596])] ! parsing: GO:0030261 ! No parse for: GO:0030261 chromosome condensation ! parsing: GO:0030307 ! Already have xp for: GO:0030307 positive regulation of cell growth ! CURRENT : positive regulation of biological process that regulates cell growth [cdef(GO:0048518, [regulates=GO:0016049])] ! parsing: GO:0030335 ! Already have xp for: GO:0030335 positive regulation of cell migration ! CURRENT : positive regulation of biological process that regulates cell migration [cdef(GO:0048518, [regulates=GO:0016477])] ! parsing: GO:0030416 ! parse: GO:0030416 using "methylamine metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:16830]) [-2] ! parse: GO:0030416 using "methylamine metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:16830]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving methylamine (CH3NH2), a flammable, explosive gas, used in tanning and in organic synthesis and produced naturally in some decaying fish, certain plants, and crude methanol." ! PROPOSED: metabolic process that OBO_REL:has_participant methylamine [cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:16830])] [Term] id: GO:0030416 ! methylamine metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant CHEBI:16830 ! methylamine synonym: "Methylamine metabolic process" EXACT [OBOL:automatic] synonym: "Methylamine metabolism" EXACT [OBOL:automatic] synonym: "methanamine metabolic process" EXACT [OBOL:automatic] synonym: "methanamine metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030416: 6.53 ! parsing: GO:0030452 ! parse: GO:0030452 using "group I intron breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000587]) [-2] ! parse: GO:0030452 using "group I intron catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000587]) [-2] ! parse: GO:0030452 using "group I intron catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000587]) [-2] ! parse: GO:0030452 using "group I intron degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000587]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of an excised group I intron." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of group_I_intron [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0000587])] [Term] id: GO:0030452 ! group I intron catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0000587 ! group_I_intron ! seconds spent parsing GO:0030452: 12.95 ! parsing: GO:0030488 ! parse: GO:0030488 using "tRNA methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=SO:0000253]) [-3] ! no existing xp def ! def: "The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to tRNA [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=SO:0000253])] [Term] id: GO:0030488 ! tRNA methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to SO:0000253 ! tRNA ! seconds spent parsing GO:0030488: 2.74 ! parsing: GO:0030501 ! Already have xp for: GO:0030501 positive regulation of bone mineralization ! CURRENT : positive regulation of biological process that regulates bone mineralization [cdef(GO:0048518, [regulates=GO:0030282])] ! parsing: GO:0030511 ! Already have xp for: GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates transforming growth factor beta receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0007179])] ! parsing: GO:0030513 ! Already have xp for: GO:0030513 positive regulation of BMP signaling pathway ! CURRENT : positive regulation of biological process that regulates BMP signaling pathway [cdef(GO:0048518, [regulates=GO:0030509])] ! parsing: GO:0030541 ! No parse for: GO:0030541 plasmid partitioning ! parsing: GO:0030650 ! parse: GO:0030650 using "peptide antibiotic metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25903]) [-2] ! parse: GO:0030650 using "peptide antibiotic metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25903]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving peptides with antibiotic activity." ! PROPOSED: metabolic process that OBO_REL:has_participant peptide antibiotic [cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:25903])] [Term] id: GO:0030650 ! peptide antibiotic metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant CHEBI:25903 ! peptide antibiotic ! seconds spent parsing GO:0030650: 15.78 ! parsing: GO:0030651 ! parse: GO:0030651 using "peptide antibiotic anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25903]) [-2] ! parse: GO:0030651 using "peptide antibiotic anabolism" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0030651 using "peptide antibiotic anabolism" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25903]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthesis" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthesis" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25903]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthetic process" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0030651 using "peptide antibiotic biosynthetic process" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0030651 using "peptide antibiotic formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25903]) [-2] ! parse: GO:0030651 using "peptide antibiotic formation" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0030651 using "peptide antibiotic formation" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0030651 using "peptide antibiotic synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:25903]) [-2] ! parse: GO:0030651 using "peptide antibiotic synthesis" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0030651 using "peptide antibiotic synthesis" => cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of peptides with antibiotic activity." ! PROPOSED: antibiotic biosynthetic process that OBO_REL:results_in_formation_of active_peptide [cdef(GO:0017000, [OBO_REL:results_in_formation_of=SO:0001064])] [Term] id: GO:0030651 ! peptide antibiotic biosynthetic process intersection_of: GO:0017000 ! antibiotic biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0001064 ! active_peptide synonym: "active peptide antibiotic anabolism" EXACT [OBOL:automatic] synonym: "active peptide antibiotic biosynthesis" EXACT [OBOL:automatic] synonym: "active peptide antibiotic biosynthetic process" EXACT [OBOL:automatic] synonym: "active peptide antibiotic formation" EXACT [OBOL:automatic] synonym: "active peptide antibiotic synthesis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030651: 39.14 ! parsing: GO:0030652 ! parse: GO:0030652 using "peptide antibiotic breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25903]) [-2] ! parse: GO:0030652 using "peptide antibiotic breakdown" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0030652 using "peptide antibiotic breakdown" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25903]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolic process" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolic process" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25903]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolism" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0030652 using "peptide antibiotic catabolism" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0030652 using "peptide antibiotic degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:25903]) [-2] ! parse: GO:0030652 using "peptide antibiotic degradation" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0030652 using "peptide antibiotic degradation" => cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of peptides with antibiotic activity." ! PROPOSED: antibiotic catabolic process that OBO_REL:results_in_breakdown_of active_peptide [cdef(GO:0017001, [OBO_REL:results_in_breakdown_of=SO:0001064])] [Term] id: GO:0030652 ! peptide antibiotic catabolic process intersection_of: GO:0017001 ! antibiotic catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0001064 ! active_peptide synonym: "active peptide antibiotic breakdown" EXACT [OBOL:automatic] synonym: "active peptide antibiotic catabolic process" EXACT [OBOL:automatic] synonym: "active peptide antibiotic catabolism" EXACT [OBOL:automatic] synonym: "active peptide antibiotic degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030652: 31.63 ! parsing: GO:0030711 ! Already have xp for: GO:0030711 positive regulation of border follicle cell delamination ! CURRENT : positive regulation of biological process that regulates border follicle cell delamination [cdef(GO:0048518, [regulates=GO:0030709])] ! parsing: GO:0030801 ! Already have xp for: GO:0030801 positive regulation of cyclic nucleotide metabolic process ! CURRENT : positive regulation of biological process that regulates cyclic nucleotide metabolic process [cdef(GO:0048518, [regulates=GO:0009187])] ! parsing: GO:0030804 ! Already have xp for: GO:0030804 positive regulation of cyclic nucleotide biosynthetic process ! CURRENT : positive regulation of biological process that regulates cyclic nucleotide biosynthetic process [cdef(GO:0048518, [regulates=GO:0009190])] ! parsing: GO:0030807 ! Already have xp for: GO:0030807 positive regulation of cyclic nucleotide catabolic process ! CURRENT : positive regulation of biological process that regulates cyclic nucleotide catabolic process [cdef(GO:0048518, [regulates=GO:0009214])] ! parsing: GO:0030810 ! Already have xp for: GO:0030810 positive regulation of nucleotide biosynthetic process ! CURRENT : positive regulation of biological process that regulates nucleotide biosynthetic process [cdef(GO:0048518, [regulates=GO:0009165])] ! parsing: GO:0030813 ! Already have xp for: GO:0030813 positive regulation of nucleotide catabolic process ! CURRENT : positive regulation of biological process that regulates nucleotide catabolic process [cdef(GO:0048518, [regulates=GO:0009166])] ! parsing: GO:0030816 ! Already have xp for: GO:0030816 positive regulation of cAMP metabolic process ! CURRENT : positive regulation of biological process that regulates cAMP metabolic process [cdef(GO:0048518, [regulates=GO:0046058])] ! parsing: GO:0030819 ! Already have xp for: GO:0030819 positive regulation of cAMP biosynthetic process ! CURRENT : positive regulation of biological process that regulates cAMP biosynthetic process [cdef(GO:0048518, [regulates=GO:0006171])] ! parsing: GO:0030822 ! Already have xp for: GO:0030822 positive regulation of cAMP catabolic process ! CURRENT : positive regulation of biological process that regulates cAMP catabolic process [cdef(GO:0048518, [regulates=GO:0006198])] ! parsing: GO:0030825 ! Already have xp for: GO:0030825 positive regulation of cGMP metabolic process ! CURRENT : positive regulation of biological process that regulates cGMP metabolic process [cdef(GO:0048518, [regulates=GO:0046068])] ! parsing: GO:0030828 ! Already have xp for: GO:0030828 positive regulation of cGMP biosynthetic process ! CURRENT : positive regulation of biological process that regulates cGMP biosynthetic process [cdef(GO:0048518, [regulates=GO:0006182])] ! parsing: GO:0030831 ! Already have xp for: GO:0030831 positive regulation of cGMP catabolic process ! CURRENT : positive regulation of biological process that regulates cGMP catabolic process [cdef(GO:0048518, [regulates=GO:0046069])] ! parsing: GO:0030836 ! Already have xp for: GO:0030836 positive regulation of actin filament depolymerization ! CURRENT : positive regulation of biological process that regulates actin filament depolymerization [cdef(GO:0048518, [regulates=GO:0030042])] ! parsing: GO:0030838 ! Already have xp for: GO:0030838 positive regulation of actin filament polymerization ! CURRENT : positive regulation of biological process that regulates actin filament polymerization [cdef(GO:0048518, [regulates=GO:0030041])] ! parsing: GO:0030841 ! Already have xp for: GO:0030841 positive regulation of intermediate filament polymerization ! CURRENT : positive regulation of biological process that regulates intermediate filament polymerization [cdef(GO:0048518, [regulates=GO:0045107])] ! parsing: GO:0030844 ! Already have xp for: GO:0030844 positive regulation of intermediate filament depolymerization ! CURRENT : positive regulation of biological process that regulates intermediate filament depolymerization [cdef(GO:0048518, [regulates=GO:0045106])] ! parsing: GO:0030846 ! No parse for: GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled ! parsing: GO:0030847 ! No parse for: GO:0030847 termination of RNA polymerase II transcription, poly(A)-independent ! parsing: GO:0030854 ! Already have xp for: GO:0030854 positive regulation of granulocyte differentiation ! CURRENT : positive regulation of biological process that regulates granulocyte differentiation [cdef(GO:0048518, [regulates=GO:0030851])] ! parsing: GO:0030858 ! Already have xp for: GO:0030858 positive regulation of epithelial cell differentiation ! CURRENT : positive regulation of biological process that regulates epithelial cell differentiation [cdef(GO:0048518, [regulates=GO:0030855])] ! parsing: GO:0030862 ! Already have xp for: GO:0030862 positive regulation of polarized epithelial cell differentiation ! CURRENT : positive regulation of biological process that regulates polarized epithelial cell differentiation [cdef(GO:0048518, [regulates=GO:0030859])] ! parsing: GO:0030887 ! Already have xp for: GO:0030887 positive regulation of myeloid dendritic cell activation ! CURRENT : positive regulation of biological process that regulates myeloid dendritic cell activation [cdef(GO:0048518, [regulates=GO:0001773])] ! parsing: GO:0030890 ! Already have xp for: GO:0030890 positive regulation of B cell proliferation ! CURRENT : positive regulation of biological process that regulates B cell proliferation [cdef(GO:0048518, [regulates=GO:0042100])] ! parsing: GO:0030919 ! No parse for: GO:0030919 peptidyl-serine O-acetylation ! parsing: GO:0030920 ! parse: GO:0030920 using "peptidyl-serine acetylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=CHEBI:25930]) [-3] ! no existing xp def ! def: "The acetylation of peptidyl-serine." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of acetyl group and OBO_REL:results_in_addition_to peptidyl-serine [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=CHEBI:25930])] [Term] id: GO:0030920 ! peptidyl-serine acetylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:40574 ! acetyl group intersection_of: OBO_REL:results_in_addition_to CHEBI:25930 ! peptidyl-serine ! seconds spent parsing GO:0030920: 1.65 ! parsing: GO:0030921 ! No parse for: GO:0030921 peptidyl-tyrosine dehydrogenation to form (Z)-2,3-didehydrotyrosine ! parsing: GO:0030922 ! No parse for: GO:0030922 peptidyl-tyrosine dehydrogenation to form (E)-2,3-didehydrotyrosine ! parsing: GO:0030923 ! No parse for: GO:0030923 metal incorporation into metallo-oxygen cluster ! parsing: GO:0030949 ! Already have xp for: GO:0030949 positive regulation of vascular endothelial growth factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates vascular endothelial growth factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0048010])] ! parsing: GO:0030959 ! No parse for: GO:0030959 peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine ! parsing: GO:0030960 ! No parse for: GO:0030960 peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine ! parsing: GO:0030961 ! No parse for: GO:0030961 peptidyl-arginine hydroxylation ! parsing: GO:0030962 ! No parse for: GO:0030962 peptidyl-arginine dihydroxylation to peptidyl-3,4-dihydroxy-L-arginine ! parsing: GO:0030963 ! No parse for: GO:0030963 peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine ! parsing: GO:0031031 ! Already have xp for: GO:0031031 positive regulation of septation initiation signaling ! CURRENT : positive regulation of biological process that regulates septation initiation signaling [cdef(GO:0048518, [regulates=GO:0031028])] ! parsing: GO:0031047 ! parse: GO:0031047 using "gene silencing by RNA" => cdef(GO:0016458, [OBO_REL:mediated_by=SO:0000356]) [-2] ! no existing xp def ! def: "Any process by which RNA molecules inactivate expression of target genes." ! PROPOSED: gene silencing that OBO_REL:mediated_by RNA [cdef(GO:0016458, [OBO_REL:mediated_by=SO:0000356])] [Term] id: GO:0031047 ! gene silencing by RNA intersection_of: GO:0016458 ! gene silencing intersection_of: OBO_REL:mediated_by SO:0000356 ! RNA ! seconds spent parsing GO:0031047: 3.89 ! parsing: GO:0031052 ! No parse for: GO:0031052 chromosome breakage ! parsing: GO:0031054 ! No parse for: GO:0031054 pre-microRNA processing ! parsing: GO:0031058 ! Already have xp for: GO:0031058 positive regulation of histone modification ! CURRENT : positive regulation of biological process that regulates histone modification [cdef(GO:0048518, [regulates=GO:0016570])] ! parsing: GO:0031062 ! Already have xp for: GO:0031062 positive regulation of histone methylation ! CURRENT : positive regulation of biological process that regulates histone methylation [cdef(GO:0048518, [regulates=GO:0016571])] ! parsing: GO:0031065 ! Already have xp for: GO:0031065 positive regulation of histone deacetylation ! CURRENT : positive regulation of biological process that regulates histone deacetylation [cdef(GO:0048518, [regulates=GO:0016575])] ! parsing: GO:0031068 ! Already have xp for: GO:0031068 positive regulation of histone deacetylation at centromere ! CURRENT : positive regulation of biological process that regulates histone deacetylation at centromere [cdef(GO:0048518, [regulates=GO:0031059])] ! parsing: GO:0031070 ! No parse for: GO:0031070 intronic snoRNA processing ! parsing: GO:0031081 ! No parse for: GO:0031081 nuclear pore distribution ! parsing: GO:0031086 ! No parse for: GO:0031086 mRNA catabolic process, deadenylation-independent decay ! parsing: GO:0031112 ! Already have xp for: GO:0031112 positive regulation of microtubule polymerization or depolymerization ! CURRENT : positive regulation of biological process that regulates microtubule polymerization or depolymerization [cdef(GO:0048518, [regulates=GO:0031109])] ! parsing: GO:0031116 ! Already have xp for: GO:0031116 positive regulation of microtubule polymerization ! CURRENT : positive regulation of biological process that regulates microtubule polymerization [cdef(GO:0048518, [regulates=GO:0046785])] ! parsing: GO:0031117 ! Already have xp for: GO:0031117 positive regulation of microtubule depolymerization ! CURRENT : positive regulation of biological process that regulates microtubule depolymerization [cdef(GO:0048518, [regulates=GO:0007019])] ! parsing: GO:0031118 ! No parse for: GO:0031118 rRNA pseudouridine synthesis ! parsing: GO:0031119 ! No parse for: GO:0031119 tRNA pseudouridine synthesis ! parsing: GO:0031120 ! No parse for: GO:0031120 snRNA pseudouridine synthesis ! parsing: GO:0031124 ! No parse for: GO:0031124 mRNA 3'-end processing ! parsing: GO:0031125 ! No parse for: GO:0031125 rRNA 3'-end processing ! parsing: GO:0031126 ! No parse for: GO:0031126 snoRNA 3'-end processing ! parsing: GO:0031134 ! No parse for: GO:0031134 sister chromatid biorientation ! parsing: GO:0031136 ! Already have xp for: GO:0031136 positive regulation of conjugation ! CURRENT : positive regulation of biological process that regulates conjugation [cdef(GO:0048518, [regulates=GO:0000746])] ! parsing: GO:0031139 ! Already have xp for: GO:0031139 positive regulation of conjugation with cellular fusion ! CURRENT : positive regulation of biological process that regulates conjugation with cellular fusion [cdef(GO:0048518, [regulates=GO:0000747])] ! parsing: GO:0031159 ! No parse for: GO:0031159 positive regulation of aggregate size involved in sorocarp development ! parsing: GO:0031163 ! No parse for: GO:0031163 metallo-sulfur cluster assembly ! parsing: GO:0031167 ! parse: GO:0031167 using "rRNA methylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=SO:0000252]) [-3] ! no existing xp def ! def: "The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of methyl group and OBO_REL:results_in_addition_to rRNA [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:32875, OBO_REL:results_in_addition_to=SO:0000252])] [Term] id: GO:0031167 ! rRNA methylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:32875 ! methyl group intersection_of: OBO_REL:results_in_addition_to SO:0000252 ! rRNA synonym: "ribosomal RNA methylation" EXACT [OBOL:automatic] synonym: "ribosomal RNA-methylation" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid methylation" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid-methylation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0031167: 2.75 ! parsing: GO:0031179 ! parse: GO:0031179 using "peptide modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=CHEBI:16670]) [-2] ! parse: GO:0031179 using "peptide modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0001064]) [-2] ! no existing xp def ! def: "The covalent alteration of one or more amino acid residues within a peptide, resulting in a change in the properties of that peptide." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to active_peptide [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0001064])] [Term] id: GO:0031179 ! peptide modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0001064 ! active_peptide synonym: "active peptide modification" EXACT [OBOL:automatic] synonym: "active peptide processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0031179: 2.3 ! parsing: GO:0031274 ! Already have xp for: GO:0031274 positive regulation of pseudopodium formation ! CURRENT : positive regulation of biological process that regulates pseudopodium formation [cdef(GO:0048518, [regulates=GO:0031269])] ! parsing: GO:0031277 ! Already have xp for: GO:0031277 positive regulation of lateral pseudopodium formation ! CURRENT : positive regulation of biological process that regulates lateral pseudopodium formation [cdef(GO:0048518, [regulates=GO:0031271])] ! parsing: GO:0031281 ! No parse for: GO:0031281 positive regulation of cyclase activity ! parsing: GO:0031284 ! No parse for: GO:0031284 positive regulation of guanylate cyclase activity ! parsing: GO:0031287 ! Already have xp for: GO:0031287 positive regulation of sorocarp stalk cell differentiation ! CURRENT : positive regulation of biological process that regulates sorocarp stalk cell differentiation [cdef(GO:0048518, [regulates=GO:0031149])] ! parsing: GO:0031292 ! No parse for: GO:0031292 gene conversion at mating-type locus, DNA double-strand break processing ! parsing: GO:0031325 ! Already have xp for: GO:0031325 positive regulation of cellular metabolic process ! CURRENT : positive regulation of biological process that regulates cellular metabolic process [cdef(GO:0048518, [regulates=GO:0044237])] ! parsing: GO:0031328 ! Already have xp for: GO:0031328 positive regulation of cellular biosynthetic process ! CURRENT : positive regulation of biological process that regulates cellular biosynthetic process [cdef(GO:0048518, [regulates=GO:0044249])] ! parsing: GO:0031331 ! Already have xp for: GO:0031331 positive regulation of cellular catabolic process ! CURRENT : positive regulation of biological process that regulates cellular catabolic process [cdef(GO:0048518, [regulates=GO:0044248])] ! parsing: GO:0031334 ! Already have xp for: GO:0031334 positive regulation of protein complex assembly ! CURRENT : positive regulation of biological process that regulates protein complex assembly [cdef(GO:0048518, [regulates=GO:0006461])] ! parsing: GO:0031337 ! Already have xp for: GO:0031337 positive regulation of sulfur amino acid metabolic process ! CURRENT : positive regulation of biological process that regulates sulfur amino acid metabolic process [cdef(GO:0048518, [regulates=GO:0000096])] ! parsing: GO:0031340 ! Already have xp for: GO:0031340 positive regulation of vesicle fusion ! CURRENT : positive regulation of biological process that regulates vesicle fusion [cdef(GO:0048518, [regulates=GO:0006906])] ! parsing: GO:0031343 ! Already have xp for: GO:0031343 positive regulation of cell killing ! CURRENT : positive regulation of biological process that regulates cell killing [cdef(GO:0048518, [regulates=GO:0001906])] ! parsing: GO:0031346 ! Already have xp for: GO:0031346 positive regulation of cell projection organization and biogenesis ! CURRENT : positive regulation of biological process that regulates cell projection organization and biogenesis [cdef(GO:0048518, [regulates=GO:0030030])] ! parsing: GO:0031349 ! Already have xp for: GO:0031349 positive regulation of defense response ! CURRENT : positive regulation of biological process that regulates defense response [cdef(GO:0048518, [regulates=GO:0006952])] ! parsing: GO:0031394 ! Already have xp for: GO:0031394 positive regulation of prostaglandin biosynthetic process ! CURRENT : positive regulation of biological process that regulates prostaglandin biosynthetic process [cdef(GO:0048518, [regulates=GO:0001516])] ! parsing: GO:0031398 ! Already have xp for: GO:0031398 positive regulation of protein ubiquitination ! CURRENT : positive regulation of biological process that regulates protein ubiquitination [cdef(GO:0048518, [regulates=GO:0016567])] ! parsing: GO:0031401 ! No parse for: GO:0031401 positive regulation of protein modification process ! parsing: GO:0031426 ! parse: GO:0031426 using "polycistronic mRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000634]) [-2] ! no existing xp def ! def: "The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to polycistronic_mRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000634])] [Term] id: GO:0031426 ! polycistronic mRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000634 ! polycistronic_mRNA ! seconds spent parsing GO:0031426: 4.41 ! parsing: GO:0031439 ! Already have xp for: GO:0031439 positive regulation of mRNA cleavage ! CURRENT : positive regulation of biological process that regulates mRNA cleavage [cdef(GO:0048518, [regulates=GO:0006379])] ! parsing: GO:0031442 ! No parse for: GO:0031442 positive regulation of mRNA 3'-end processing ! parsing: GO:0031448 ! Already have xp for: GO:0031448 positive regulation of fast-twitch skeletal muscle fiber contraction ! CURRENT : positive regulation of biological process that regulates fast-twitch skeletal muscle fiber contraction [cdef(GO:0048518, [regulates=GO:0031443])] ! parsing: GO:0031451 ! Already have xp for: GO:0031451 positive regulation of slow-twitch skeletal muscle fiber contraction ! CURRENT : positive regulation of biological process that regulates slow-twitch skeletal muscle fiber contraction [cdef(GO:0048518, [regulates=GO:0031444])] ! parsing: GO:0031453 ! Already have xp for: GO:0031453 positive regulation of heterochromatin formation ! CURRENT : negative regulation of biological process that regulates regulation of heterochromatin formation [cdef(GO:0048519, [regulates=GO:0031445])] ! parsing: GO:0031496 ! Already have xp for: GO:0031496 positive regulation of mating type switching ! CURRENT : positive regulation of biological process that regulates mating type switching [cdef(GO:0048518, [regulates=GO:0007533])] ! parsing: GO:0031504 ! No parse for: GO:0031504 peptidoglycan-based cell wall organization and biogenesis ! parsing: GO:0031508 ! parse: GO:0031508 using "centric heterochromatin formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0005721]) [-2] ! parse: GO:0031508 using "centromeric heterochromatin biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0005721]) [-2] ! parse: GO:0031508 using "centromeric heterochromatin formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0005721]) [-2] ! no existing xp def ! def: "The assembly of chromatin into heterochromatin near the centromere." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of centric heterochromatin [cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0005721])] [Term] id: GO:0031508 ! centric heterochromatin formation intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of GO:0005721 ! centric heterochromatin ! seconds spent parsing GO:0031508: 7.49 ! parsing: GO:0031509 ! parse: GO:0031509 using "telomeric heterochromatin formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0031933]) [-2] ! no existing xp def ! def: "The assembly of chromatin into heterochromatin at the telomere." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of telomeric heterochromatin [cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0031933])] [Term] id: GO:0031509 ! telomeric heterochromatin formation intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of GO:0031933 ! telomeric heterochromatin ! seconds spent parsing GO:0031509: 3.74 ! parsing: GO:0031536 ! No parse for: GO:0031536 positive regulation of exit from mitosis ! parsing: GO:0031539 ! Already have xp for: GO:0031539 positive regulation of anthocyanin metabolic process ! CURRENT : positive regulation of biological process that regulates anthocyanin metabolic process [cdef(GO:0048518, [regulates=GO:0046283])] ! parsing: GO:0031542 ! Already have xp for: GO:0031542 positive regulation of anthocyanin biosynthetic process ! CURRENT : positive regulation of biological process that regulates anthocyanin biosynthetic process [cdef(GO:0048518, [regulates=GO:0009718])] ! parsing: GO:0031550 ! Already have xp for: GO:0031550 positive regulation of brain-derived neurotrophic factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates brain-derived neurotrophic factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0031547])] ! parsing: GO:0031553 ! No parse for: GO:0031553 positive regulation of brain-derived neurotrophic factor receptor activity ! parsing: GO:0031555 ! No parse for: GO:0031555 transcriptional attenuation ! parsing: GO:0031556 ! parse: GO:0031556 using "transcriptional attenuation by ribosome" => cdef(GO:0031555, [OBO_REL:mediated_by=GO:0005840]) [-2] ! no existing xp def ! def: "A type of transcriptional regulation at the level of early termination. This process can occur only in prokaryotes, where transcription of an operon into messenger RNA and translation of that mRNA into polypeptides occur simultaneously. The general principle is that alternative mRNA secondary structures occur under different physiological conditions such as availabe amount of a particular amino acid. One set of conditions favors early termination of transcription. In the classic example of the trp biosynthesis operon, translation of the gene for a short, trp-containing polypeptide called the trp operon leader peptide pauses either at a trp codon (if tryptophan is scarce) or the stop codon (if trp is readily available). In the former situation transcription continues, but in the latter a Rho-independent terminator forms and reduces, or attenuates, expression of the tryptophan biosynthesis genes. Although the polypeptides encoded by leader peptide genes appear not to be stable once their translation is complete, it is suggested by recent studies that their nascent polypeptide chains interact specifically with ribosomes, specific uncharged tRNAs, or other cellular components to inhibit release at the stop codon and improve the function of transcriptional attenuation as a regulatory switch." ! PROPOSED: transcriptional attenuation that OBO_REL:mediated_by ribosome [cdef(GO:0031555, [OBO_REL:mediated_by=GO:0005840])] [Term] id: GO:0031556 ! transcriptional attenuation by ribosome intersection_of: GO:0031555 ! transcriptional attenuation intersection_of: OBO_REL:mediated_by GO:0005840 ! ribosome ! seconds spent parsing GO:0031556: 3.43 ! parsing: GO:0031564 ! No parse for: GO:0031564 transcription antitermination ! parsing: GO:0031587 ! No parse for: GO:0031587 positive regulation of inositol-1,4,5-triphosphate receptor activity ! parsing: GO:0031619 ! No parse for: GO:0031619 homologous chromosome orientation during meiosis ! parsing: GO:0031622 ! Already have xp for: GO:0031622 positive regulation of fever ! CURRENT : positive regulation of biological process that regulates fever [cdef(GO:0048518, [regulates=GO:0001660])] ! parsing: GO:0031627 ! No parse for: GO:0031627 telomeric loop formation ! parsing: GO:0031632 ! Already have xp for: GO:0031632 positive regulation of synaptic vesicle fusion to presynaptic membrane ! CURRENT : positive regulation of biological process that regulates synaptic vesicle fusion to presynaptic membrane [cdef(GO:0048518, [regulates=GO:0031629])] ! parsing: GO:0031643 ! Already have xp for: GO:0031643 positive regulation of myelination ! CURRENT : positive regulation of biological process that regulates myelination [cdef(GO:0048518, [regulates=GO:0042552])] ! parsing: GO:0031646 ! Already have xp for: GO:0031646 positive regulation of neurological system process ! CURRENT : positive regulation of biological process that regulates neurological system process [cdef(GO:0048518, [regulates=GO:0050877])] ! parsing: GO:0031652 ! Already have xp for: GO:0031652 positive regulation of heat generation ! CURRENT : positive regulation of biological process that regulates heat generation [cdef(GO:0048518, [regulates=GO:0031649])] ! parsing: GO:0031656 ! Already have xp for: GO:0031656 positive regulation of heat dissipation ! CURRENT : positive regulation of biological process that regulates heat dissipation [cdef(GO:0048518, [regulates=GO:0031653])] ! parsing: GO:0031666 ! Already have xp for: GO:0031666 positive regulation of lipopolysaccharide-mediated signaling pathway ! CURRENT : positive regulation of biological process that regulates lipopolysaccharide-mediated signaling pathway [cdef(GO:0048518, [regulates=GO:0031663])] ! parsing: GO:0031860 ! No parse for: GO:0031860 telomeric 3' overhang formation ! parsing: GO:0031915 ! No parse for: GO:0031915 positive regulation of synaptic plasticity ! parsing: GO:0031918 ! No parse for: GO:0031918 positive regulation of synaptic metaplasticity ! parsing: GO:0031937 ! Already have xp for: GO:0031937 positive regulation of chromatin silencing ! CURRENT : positive regulation of biological process that regulates chromatin silencing [cdef(GO:0048518, [regulates=GO:0006342])] ! parsing: GO:0031940 ! Already have xp for: GO:0031940 positive regulation of chromatin silencing at telomere ! CURRENT : positive regulation of biological process that regulates chromatin silencing at telomere [cdef(GO:0048518, [regulates=GO:0006348])] ! parsing: GO:0031945 ! Already have xp for: GO:0031945 positive regulation of glucocorticoid metabolic process ! CURRENT : positive regulation of biological process that regulates glucocorticoid metabolic process [cdef(GO:0048518, [regulates=GO:0008211])] ! parsing: GO:0031948 ! Already have xp for: GO:0031948 positive regulation of glucocorticoid biosynthetic process ! CURRENT : positive regulation of biological process that regulates glucocorticoid biosynthetic process [cdef(GO:0048518, [regulates=GO:0006704])] ! parsing: GO:0031951 ! Already have xp for: GO:0031951 positive regulation of glucocorticoid catabolic process ! CURRENT : positive regulation of biological process that regulates glucocorticoid catabolic process [cdef(GO:0048518, [regulates=GO:0006713])] ! parsing: GO:0031954 ! Already have xp for: GO:0031954 positive regulation of protein amino acid autophosphorylation ! CURRENT : positive regulation of biological process that regulates protein amino acid autophosphorylation [cdef(GO:0048518, [regulates=GO:0046777])] ! parsing: GO:0031990 ! No parse for: GO:0031990 mRNA export from nucleus during heat stress ! parsing: GO:0032000 ! Already have xp for: GO:0032000 positive regulation of fatty acid beta-oxidation ! CURRENT : positive regulation of biological process that regulates fatty acid beta-oxidation [cdef(GO:0048518, [regulates=GO:0006635])] ! parsing: GO:0032005 ! No parse for: GO:0032005 signal transduction during conjugation with cellular fusion ! parsing: GO:0032008 ! Already have xp for: GO:0032008 positive regulation of TOR signaling pathway ! CURRENT : positive regulation of biological process that regulates TOR signaling pathway [cdef(GO:0048518, [regulates=GO:0031929])] ! parsing: GO:0032014 ! Already have xp for: GO:0032014 positive regulation of ARF protein signal transduction ! CURRENT : positive regulation of biological process that regulates ARF protein signal transduction [cdef(GO:0048518, [regulates=GO:0032011])] ! parsing: GO:0032017 ! Already have xp for: GO:0032017 positive regulation of Ran protein signal transduction ! CURRENT : positive regulation of biological process that regulates Ran protein signal transduction [cdef(GO:0048518, [regulates=GO:0031291])] ! parsing: GO:0032024 ! Already have xp for: GO:0032024 positive regulation of insulin secretion ! CURRENT : positive regulation of biological process that regulates insulin secretion [cdef(GO:0048518, [regulates=GO:0030073])] ! parsing: GO:0032056 ! No parse for: GO:0032056 positive regulation of translation in response to stress ! parsing: GO:0032058 ! No parse for: GO:0032058 positive regulation of translational initiation in response to stress ! parsing: GO:0032062 ! No parse for: GO:0032062 positive regulation of translation in response to osmotic stress ! parsing: GO:0032064 ! No parse for: GO:0032064 positive regulation of translational initiation in response to osmotic stress ! parsing: GO:0032075 ! No parse for: GO:0032075 positive regulation of nuclease activity ! parsing: GO:0032077 ! No parse for: GO:0032077 positive regulation of deoxyribonuclease activity ! parsing: GO:0032079 ! No parse for: GO:0032079 positive regulation of endodeoxyribonuclease activity ! parsing: GO:0032092 ! No parse for: GO:0032092 positive regulation of protein binding ! parsing: GO:0032097 ! Already have xp for: GO:0032097 positive regulation of response to food ! CURRENT : positive regulation of biological process that regulates response to food [cdef(GO:0048518, [regulates=GO:0032094])] ! parsing: GO:0032100 ! No parse for: GO:0032100 positive regulation of appetite ! parsing: GO:0032103 ! Already have xp for: GO:0032103 positive regulation of response to external stimulus ! CURRENT : positive regulation of biological process that regulates response to external stimulus [cdef(GO:0048518, [regulates=GO:0009605])] ! parsing: GO:0032106 ! Already have xp for: GO:0032106 positive regulation of response to extracellular stimulus ! CURRENT : positive regulation of biological process that regulates response to extracellular stimulus [cdef(GO:0048518, [regulates=GO:0009991])] ! parsing: GO:0032109 ! Already have xp for: GO:0032109 positive regulation of response to nutrient levels ! CURRENT : positive regulation of biological process that regulates response to nutrient levels [cdef(GO:0048518, [regulates=GO:0031667])] ! parsing: GO:0032197 ! No parse for: GO:0032197 transposition, RNA-mediated ! parsing: GO:0032198 ! No parse for: GO:0032198 MITE transposition ! parsing: GO:0032199 ! No parse for: GO:0032199 transcription during RNA-mediated transposition ! parsing: GO:0032200 ! No parse for: GO:0032200 telomere organization and biogenesis ! parsing: GO:0032201 ! No parse for: GO:0032201 telomere maintenance via semi-conservative replication ! parsing: GO:0032202 ! parse: GO:0032202 using "telomere formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0000624]) [-2] ! no existing xp def ! def: "The creation of a telomere at a non-telomeric double-stranded DNA end." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of telomere [cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0000624])] [Term] id: GO:0032202 ! telomere assembly intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0000624 ! telomere synonym: "telomeric DNA anabolism" EXACT [OBOL:automatic] synonym: "telomeric DNA biosynthesis" EXACT [OBOL:automatic] synonym: "telomeric DNA biosynthetic process" EXACT [OBOL:automatic] synonym: "telomeric DNA formation" EXACT [OBOL:automatic] synonym: "telomeric DNA synthesis" EXACT [OBOL:automatic] synonym: "telomeric sequence anabolism" EXACT [OBOL:automatic] synonym: "telomeric sequence biosynthesis" EXACT [OBOL:automatic] synonym: "telomeric sequence biosynthetic process" EXACT [OBOL:automatic] synonym: "telomeric sequence formation" EXACT [OBOL:automatic] synonym: "telomeric sequence synthesis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0032202: 5.05 ! parsing: GO:0032203 ! No parse for: GO:0032203 telomere formation via telomerase ! parsing: GO:0032206 ! Already have xp for: GO:0032206 positive regulation of telomere maintenance ! CURRENT : positive regulation of biological process that regulates telomere maintenance [cdef(GO:0048518, [regulates=GO:0000723])] ! parsing: GO:0032209 ! Already have xp for: GO:0032209 positive regulation of telomere maintenance via recombination ! CURRENT : positive regulation of biological process that regulates telomere maintenance via recombination [cdef(GO:0048518, [regulates=GO:0000722])] ! parsing: GO:0032212 ! Already have xp for: GO:0032212 positive regulation of telomere maintenance via telomerase ! CURRENT : positive regulation of biological process that regulates telomere maintenance via telomerase [cdef(GO:0048518, [regulates=GO:0007004])] ! parsing: GO:0032215 ! Already have xp for: GO:0032215 positive regulation of telomere maintenance via semi-conservative replication ! CURRENT : positive regulation of biological process that regulates telomere maintenance via semi-conservative replication [cdef(GO:0048518, [regulates=GO:0032201])] ! parsing: GO:0032224 ! No parse for: GO:0032224 positive regulation of synaptic transmission, cholinergic ! parsing: GO:0032226 ! No parse for: GO:0032226 positive regulation of synaptic transmission, dopaminergic ! parsing: GO:0032230 ! No parse for: GO:0032230 positive regulation of synaptic transmission, GABAergic ! parsing: GO:0032233 ! Already have xp for: GO:0032233 positive regulation of actin filament bundle formation ! CURRENT : positive regulation of biological process that regulates actin filament bundle formation [cdef(GO:0048518, [regulates=GO:0051017])] ! parsing: GO:0032236 ! No parse for: GO:0032236 positive regulation of calcium ion transport via store-operated calcium channel ! parsing: GO:0032241 ! No parse for: GO:0032241 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport ! parsing: GO:0032244 ! Already have xp for: GO:0032244 positive regulation of nucleoside transport ! CURRENT : positive regulation of biological process that regulates nucleoside transport [cdef(GO:0048518, [regulates=GO:0015858])] ! parsing: GO:0032248 ! Already have xp for: GO:0032248 positive regulation of purine nucleoside transport ! CURRENT : positive regulation of biological process that regulates purine nucleoside transport [cdef(GO:0048518, [regulates=GO:0015860])] ! parsing: GO:0032251 ! Already have xp for: GO:0032251 positive regulation of adenosine transport ! CURRENT : positive regulation of biological process that regulates adenosine transport [cdef(GO:0048518, [regulates=GO:0032238])] ! parsing: GO:0032270 ! Already have xp for: GO:0032270 positive regulation of cellular protein metabolic process ! CURRENT : positive regulation of biological process that regulates cellular protein metabolic process [cdef(GO:0048518, [regulates=GO:0044267])] ! parsing: GO:0032273 ! Already have xp for: GO:0032273 positive regulation of protein polymerization ! CURRENT : positive regulation of biological process that regulates protein polymerization [cdef(GO:0048518, [regulates=GO:0051258])] ! parsing: GO:0032278 ! Already have xp for: GO:0032278 positive regulation of gonadotropin secretion ! CURRENT : positive regulation of biological process that regulates gonadotropin secretion [cdef(GO:0048518, [regulates=GO:0032274])] ! parsing: GO:0032298 ! Already have xp for: GO:0032298 positive regulation of DNA replication initiation ! CURRENT : positive regulation of biological process that regulates DNA replication initiation [cdef(GO:0048518, [regulates=GO:0006270])] ! parsing: GO:0032305 ! Already have xp for: GO:0032305 positive regulation of icosanoid secretion ! CURRENT : positive regulation of biological process that regulates icosanoid secretion [cdef(GO:0048518, [regulates=GO:0032309])] ! parsing: GO:0032308 ! Already have xp for: GO:0032308 positive regulation of prostaglandin secretion ! CURRENT : positive regulation of biological process that regulates prostaglandin secretion [cdef(GO:0048518, [regulates=GO:0032310])] ! parsing: GO:0032320 ! No parse for: GO:0032320 positive regulation of Ras GTPase activity ! parsing: GO:0032321 ! No parse for: GO:0032321 positive regulation of Rho GTPase activity ! parsing: GO:0032332 ! Already have xp for: GO:0032332 positive regulation of chondrocyte differentiation ! CURRENT : positive regulation of biological process that regulates chondrocyte differentiation [cdef(GO:0048518, [regulates=GO:0002062])] ! parsing: GO:0032337 ! Already have xp for: GO:0032337 positive regulation of activin secretion ! CURRENT : positive regulation of biological process that regulates activin secretion [cdef(GO:0048518, [regulates=GO:0032333])] ! parsing: GO:0032340 ! Already have xp for: GO:0032340 positive regulation of inhibin secretion ! CURRENT : positive regulation of biological process that regulates inhibin secretion [cdef(GO:0048518, [regulates=GO:0032334])] ! parsing: GO:0032346 ! Already have xp for: GO:0032346 positive regulation of aldosterone metabolic process ! CURRENT : positive regulation of biological process that regulates aldosterone metabolic process [cdef(GO:0048518, [regulates=GO:0032341])] ! parsing: GO:0032349 ! Already have xp for: GO:0032349 positive regulation of aldosterone biosynthetic process ! CURRENT : positive regulation of biological process that regulates aldosterone biosynthetic process [cdef(GO:0048518, [regulates=GO:0032342])] ! parsing: GO:0032352 ! Already have xp for: GO:0032352 positive regulation of hormone metabolic process ! CURRENT : positive regulation of biological process that regulates hormone metabolic process [cdef(GO:0048518, [regulates=GO:0042445])] ! parsing: GO:0032359 ! No parse for: GO:0032359 provirus excision ! parsing: GO:0032360 ! No parse for: GO:0032360 provirus maintenance ! parsing: GO:0032370 ! Already have xp for: GO:0032370 positive regulation of lipid transport ! CURRENT : positive regulation of biological process that regulates lipid transport [cdef(GO:0048518, [regulates=GO:0006869])] ! parsing: GO:0032373 ! Already have xp for: GO:0032373 positive regulation of sterol transport ! CURRENT : positive regulation of biological process that regulates sterol transport [cdef(GO:0048518, [regulates=GO:0015918])] ! parsing: GO:0032376 ! Already have xp for: GO:0032376 positive regulation of cholesterol transport ! CURRENT : positive regulation of biological process that regulates cholesterol transport [cdef(GO:0048518, [regulates=GO:0030301])] ! parsing: GO:0032379 ! Already have xp for: GO:0032379 positive regulation of intracellular lipid transport ! CURRENT : positive regulation of biological process that regulates intracellular lipid transport [cdef(GO:0048518, [regulates=GO:0032365])] ! parsing: GO:0032382 ! Already have xp for: GO:0032382 positive regulation of intracellular sterol transport ! CURRENT : positive regulation of biological process that regulates intracellular sterol transport [cdef(GO:0048518, [regulates=GO:0032366])] ! parsing: GO:0032385 ! Already have xp for: GO:0032385 positive regulation of intracellular cholesterol transport ! CURRENT : positive regulation of biological process that regulates intracellular cholesterol transport [cdef(GO:0048518, [regulates=GO:0032367])] ! parsing: GO:0032388 ! Already have xp for: GO:0032388 positive regulation of intracellular transport ! CURRENT : positive regulation of biological process that regulates intracellular transport [cdef(GO:0048518, [regulates=GO:0046907])] ! parsing: GO:0032411 ! No parse for: GO:0032411 positive regulation of transporter activity ! parsing: GO:0032414 ! No parse for: GO:0032414 positive regulation of ion transmembrane transporter activity ! parsing: GO:0032417 ! No parse for: GO:0032417 positive regulation of sodium:hydrogen antiporter activity ! parsing: GO:0032425 ! Already have xp for: GO:0032425 positive regulation of mismatch repair ! CURRENT : positive regulation of biological process that regulates mismatch repair [cdef(GO:0048518, [regulates=GO:0006298])] ! parsing: GO:0032430 ! No parse for: GO:0032430 positive regulation of phospholipase A2 activity ! parsing: GO:0032436 ! Already have xp for: GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process ! CURRENT : positive regulation of biological process that regulates proteasomal ubiquitin-dependent protein catabolic process [cdef(GO:0048518, [regulates=GO:0043161])] ! parsing: GO:0032461 ! Already have xp for: GO:0032461 positive regulation of protein oligomerization ! CURRENT : positive regulation of biological process that regulates protein oligomerization [cdef(GO:0048518, [regulates=GO:0051259])] ! parsing: GO:0032464 ! Already have xp for: GO:0032464 positive regulation of protein homooligomerization ! CURRENT : positive regulation of biological process that regulates protein homooligomerization [cdef(GO:0048518, [regulates=GO:0051260])] ! parsing: GO:0032467 ! Already have xp for: GO:0032467 positive regulation of cytokinesis ! CURRENT : positive regulation of biological process that regulates cytokinesis [cdef(GO:0048518, [regulates=GO:0000910])] ! parsing: GO:0032481 ! Already have xp for: GO:0032481 positive regulation of type I interferon production ! CURRENT : positive regulation of biological process that regulates type I interferon production [cdef(GO:0048518, [regulates=GO:0032606])] ! parsing: GO:0032514 ! No parse for: GO:0032514 positive regulation of protein phosphatase type 2B activity ! parsing: GO:0032516 ! No parse for: GO:0032516 positive regulation of phosphoprotein phosphatase activity ! parsing: GO:0032540 ! No parse for: GO:0032540 positive regulation of host-seeking behavior ! parsing: GO:0032568 ! No parse for: GO:0032568 general transcription from RNA polymerase II promoter ! parsing: GO:0032722 ! Already have xp for: GO:0032722 positive regulation of chemokine production ! CURRENT : positive regulation of biological process that regulates chemokine production [cdef(GO:0048518, [regulates=GO:0032602])] ! parsing: GO:0032723 ! Already have xp for: GO:0032723 positive regulation of connective tissue growth factor production ! CURRENT : positive regulation of biological process that regulates connective tissue growth factor production [cdef(GO:0048518, [regulates=GO:0032601])] ! parsing: GO:0032724 ! Already have xp for: GO:0032724 positive regulation of fractalkine production ! CURRENT : positive regulation of biological process that regulates fractalkine production [cdef(GO:0048518, [regulates=GO:0032603])] ! parsing: GO:0032725 ! Already have xp for: GO:0032725 positive regulation of granulocyte macrophage colony-stimulating factor production ! CURRENT : positive regulation of biological process that regulates granulocyte macrophage colony-stimulating factor production [cdef(GO:0048518, [regulates=GO:0032604])] ! parsing: GO:0032726 ! Already have xp for: GO:0032726 positive regulation of hepatocyte growth factor production ! CURRENT : positive regulation of biological process that regulates hepatocyte growth factor production [cdef(GO:0048518, [regulates=GO:0032605])] ! parsing: GO:0032727 ! Already have xp for: GO:0032727 positive regulation of interferon-alpha production ! CURRENT : positive regulation of biological process that regulates interferon-alpha production [cdef(GO:0048518, [regulates=GO:0032607])] ! parsing: GO:0032728 ! Already have xp for: GO:0032728 positive regulation of interferon-beta production ! CURRENT : positive regulation of biological process that regulates interferon-beta production [cdef(GO:0048518, [regulates=GO:0032608])] ! parsing: GO:0032729 ! Already have xp for: GO:0032729 positive regulation of interferon-gamma production ! CURRENT : positive regulation of biological process that regulates interferon-gamma production [cdef(GO:0048518, [regulates=GO:0032609])] ! parsing: GO:0032730 ! Already have xp for: GO:0032730 positive regulation of interleukin-1 alpha production ! CURRENT : positive regulation of biological process that regulates interleukin-1 alpha production [cdef(GO:0048518, [regulates=GO:0032610])] ! parsing: GO:0032731 ! Already have xp for: GO:0032731 positive regulation of interleukin-1 beta production ! CURRENT : positive regulation of biological process that regulates interleukin-1 beta production [cdef(GO:0048518, [regulates=GO:0032611])] ! parsing: GO:0032732 ! Already have xp for: GO:0032732 positive regulation of interleukin-1 production ! CURRENT : positive regulation of biological process that regulates interleukin-1 production [cdef(GO:0048518, [regulates=GO:0032612])] ! parsing: GO:0032733 ! No parse for: GO:0032733 positive regulation of interleukin-10 production ! parsing: GO:0032734 ! No parse for: GO:0032734 positive regulation of interleukin-11 production ! parsing: GO:0032735 ! No parse for: GO:0032735 positive regulation of interleukin-12 production ! parsing: GO:0032736 ! No parse for: GO:0032736 positive regulation of interleukin-13 production ! parsing: GO:0032737 ! No parse for: GO:0032737 positive regulation of interleukin-14 production ! parsing: GO:0032738 ! No parse for: GO:0032738 positive regulation of interleukin-15 production ! parsing: GO:0032739 ! No parse for: GO:0032739 positive regulation of interleukin-16 production ! parsing: GO:0032740 ! No parse for: GO:0032740 positive regulation of interleukin-17 production ! parsing: GO:0032741 ! No parse for: GO:0032741 positive regulation of interleukin-18 production ! parsing: GO:0032742 ! No parse for: GO:0032742 positive regulation of interleukin-19 production ! parsing: GO:0032743 ! Already have xp for: GO:0032743 positive regulation of interleukin-2 production ! CURRENT : positive regulation of biological process that regulates interleukin-2 production [cdef(GO:0048518, [regulates=GO:0032623])] ! parsing: GO:0032744 ! No parse for: GO:0032744 positive regulation of interleukin-20 production ! parsing: GO:0032745 ! No parse for: GO:0032745 positive regulation of interleukin-21 production ! parsing: GO:0032746 ! No parse for: GO:0032746 positive regulation of interleukin-22 production ! parsing: GO:0032747 ! No parse for: GO:0032747 positive regulation of interleukin-23 production ! parsing: GO:0032748 ! No parse for: GO:0032748 positive regulation of interleukin-24 production ! parsing: GO:0032749 ! No parse for: GO:0032749 positive regulation of interleukin-25 production ! parsing: GO:0032750 ! No parse for: GO:0032750 positive regulation of interleukin-26 production ! parsing: GO:0032751 ! No parse for: GO:0032751 positive regulation of interleukin-27 production ! parsing: GO:0032752 ! Already have xp for: GO:0032752 positive regulation of interleukin-3 production ! CURRENT : positive regulation of biological process that regulates interleukin-3 production [cdef(GO:0048518, [regulates=GO:0032632])] ! parsing: GO:0032753 ! Already have xp for: GO:0032753 positive regulation of interleukin-4 production ! CURRENT : positive regulation of biological process that regulates interleukin-4 production [cdef(GO:0048518, [regulates=GO:0032633])] ! parsing: GO:0032754 ! Already have xp for: GO:0032754 positive regulation of interleukin-5 production ! CURRENT : positive regulation of biological process that regulates interleukin-5 production [cdef(GO:0048518, [regulates=GO:0032634])] ! parsing: GO:0032755 ! Already have xp for: GO:0032755 positive regulation of interleukin-6 production ! CURRENT : positive regulation of biological process that regulates interleukin-6 production [cdef(GO:0048518, [regulates=GO:0032635])] ! parsing: GO:0032756 ! Already have xp for: GO:0032756 positive regulation of interleukin-7 production ! CURRENT : positive regulation of biological process that regulates interleukin-7 production [cdef(GO:0048518, [regulates=GO:0032636])] ! parsing: GO:0032757 ! Already have xp for: GO:0032757 positive regulation of interleukin-8 production ! CURRENT : positive regulation of biological process that regulates interleukin-8 production [cdef(GO:0048518, [regulates=GO:0032637])] ! parsing: GO:0032758 ! Already have xp for: GO:0032758 positive regulation of interleukin-9 production ! CURRENT : positive regulation of biological process that regulates interleukin-9 production [cdef(GO:0048518, [regulates=GO:0032638])] ! parsing: GO:0032759 ! Already have xp for: GO:0032759 positive regulation of TRAIL production ! CURRENT : positive regulation of biological process that regulates TRAIL production [cdef(GO:0048518, [regulates=GO:0032639])] ! parsing: GO:0032760 ! Already have xp for: GO:0032760 positive regulation of tumor necrosis factor production ! CURRENT : positive regulation of biological process that regulates tumor necrosis factor production [cdef(GO:0048518, [regulates=GO:0032640])] ! parsing: GO:0032761 ! Already have xp for: GO:0032761 positive regulation of lymphotoxin A production ! CURRENT : positive regulation of biological process that regulates lymphotoxin A production [cdef(GO:0048518, [regulates=GO:0032641])] ! parsing: GO:0032765 ! Already have xp for: GO:0032765 positive regulation of mast cell cytokine production ! CURRENT : positive regulation of biological process that regulates mast cell cytokine production [cdef(GO:0048518, [regulates=GO:0032762])] ! parsing: GO:0032770 ! No parse for: GO:0032770 positive regulation of monooxygenase activity ! parsing: GO:0032773 ! No parse for: GO:0032773 positive regulation of monophenol monooxygenase activity ! parsing: GO:0032781 ! No parse for: GO:0032781 positive regulation of ATPase activity ! parsing: GO:0032786 ! Already have xp for: GO:0032786 positive regulation of RNA elongation ! CURRENT : positive regulation of biological process that regulates RNA elongation [cdef(GO:0048518, [regulates=GO:0006354])] ! parsing: GO:0032805 ! Already have xp for: GO:0032805 positive regulation of low-density lipoprotein receptor catabolic process ! CURRENT : positive regulation of biological process that regulates low-density lipoprotein receptor catabolic process [cdef(GO:0048518, [regulates=GO:0032802])] ! parsing: GO:0032812 ! Already have xp for: GO:0032812 positive regulation of epinephrine secretion ! CURRENT : positive regulation of biological process that regulates epinephrine secretion [cdef(GO:0048518, [regulates=GO:0048242])] ! parsing: GO:0032816 ! Already have xp for: GO:0032816 positive regulation of natural killer cell activation ! CURRENT : positive regulation of biological process that regulates natural killer cell activation [cdef(GO:0048518, [regulates=GO:0030101])] ! parsing: GO:0032819 ! Already have xp for: GO:0032819 positive regulation of natural killer cell proliferation ! CURRENT : positive regulation of biological process that regulates natural killer cell proliferation [cdef(GO:0048518, [regulates=GO:0001787])] ! parsing: GO:0032822 ! Already have xp for: GO:0032822 positive regulation of natural killer cell proliferation during immune response ! CURRENT : positive regulation of biological process that regulates natural killer cell proliferation during immune response [cdef(GO:0048518, [regulates=GO:0002324])] ! parsing: GO:0032825 ! Already have xp for: GO:0032825 positive regulation of natural killer cell differentiation ! CURRENT : positive regulation of biological process that regulates natural killer cell differentiation [cdef(GO:0048518, [regulates=GO:0001779])] ! parsing: GO:0032828 ! Already have xp for: GO:0032828 positive regulation of natural killer cell differentiation during immune response ! CURRENT : positive regulation of biological process that regulates natural killer cell differentiation during immune response [cdef(GO:0048518, [regulates=GO:0002325])] ! parsing: GO:0032831 ! No parse for: GO:0032831 positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation ! parsing: GO:0032834 ! No parse for: GO:0032834 positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation during immune response ! parsing: GO:0032846 ! Already have xp for: GO:0032846 positive regulation of homeostatic process ! CURRENT : positive regulation of biological process that regulates homeostatic process [cdef(GO:0048518, [regulates=GO:0042592])] ! parsing: GO:0032849 ! Already have xp for: GO:0032849 positive regulation of cellular pH reduction ! CURRENT : positive regulation of biological process that regulates intracellular pH reduction [cdef(GO:0048518, [regulates=GO:0051452])] ! parsing: GO:0032850 ! No parse for: GO:0032850 positive regulation of ARF GTPase activity ! parsing: GO:0032851 ! No parse for: GO:0032851 positive regulation of Rab GTPase activity ! parsing: GO:0032852 ! No parse for: GO:0032852 positive regulation of Ral GTPase activity ! parsing: GO:0032853 ! No parse for: GO:0032853 positive regulation of Ran GTPase activity ! parsing: GO:0032854 ! No parse for: GO:0032854 positive regulation of Rap GTPase activity ! parsing: GO:0032855 ! No parse for: GO:0032855 positive regulation of Rac GTPase activity ! parsing: GO:0032874 ! Already have xp for: GO:0032874 positive regulation of stress-activated MAPK cascade ! CURRENT : positive regulation of biological process that regulates stress-activated MAPK cascade [cdef(GO:0048518, [regulates=GO:0051403])] ! parsing: GO:0032877 ! Already have xp for: GO:0032877 positive regulation of DNA endoreduplication ! CURRENT : positive regulation of biological process that regulates DNA endoreduplication [cdef(GO:0048518, [regulates=GO:0042023])] ! parsing: GO:0032892 ! Already have xp for: GO:0032892 positive regulation of organic acid transport ! CURRENT : positive regulation of biological process that regulates organic acid transport [cdef(GO:0048518, [regulates=GO:0015849])] ! parsing: GO:0032895 ! Already have xp for: GO:0032895 positive regulation of gluconate transport ! CURRENT : positive regulation of biological process that regulates gluconate transport [cdef(GO:0048518, [regulates=GO:0015725])] ! parsing: GO:0032901 ! Already have xp for: GO:0032901 positive regulation of neurotrophin production ! CURRENT : positive regulation of biological process that regulates neurotrophin production [cdef(GO:0048518, [regulates=GO:0032898])] ! parsing: GO:0032914 ! No parse for: GO:0032914 positive regulation of transforming growth factor-beta1 production ! parsing: GO:0032915 ! No parse for: GO:0032915 positive regulation of transforming growth factor-beta2 production ! parsing: GO:0032916 ! No parse for: GO:0032916 positive regulation of transforming growth factor-beta3 production ! parsing: GO:0032927 ! Already have xp for: GO:0032927 positive regulation of activin receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates activin receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0032924])] ! parsing: GO:0032930 ! Already have xp for: GO:0032930 positive regulation of superoxide release ! CURRENT : positive regulation of biological process that regulates superoxide release [cdef(GO:0048518, [regulates=GO:0042554])] ! parsing: GO:0032939 ! No parse for: GO:0032939 positive regulation of translation in response to oxidative stress ! parsing: GO:0032946 ! Already have xp for: GO:0032946 positive regulation of mononuclear cell proliferation ! CURRENT : positive regulation of biological process that regulates mononuclear cell proliferation [cdef(GO:0048518, [regulates=GO:0032943])] ! parsing: GO:0032962 ! Already have xp for: GO:0032962 positive regulation of inositol trisphosphate biosynthetic process ! CURRENT : positive regulation of biological process that regulates inositol trisphosphate biosynthetic process [cdef(GO:0048518, [regulates=GO:0032959])] ! parsing: GO:0032967 ! Already have xp for: GO:0032967 positive regulation of collagen biosynthetic process ! CURRENT : positive regulation of biological process that regulates collagen biosynthetic process [cdef(GO:0048518, [regulates=GO:0032964])] ! parsing: GO:0032968 ! Already have xp for: GO:0032968 positive regulation of RNA elongation from RNA polymerase II promoter ! CURRENT : positive regulation of biological process that regulates RNA elongation from RNA polymerase II promoter [cdef(GO:0048518, [regulates=GO:0006368])] ! parsing: GO:0032973 ! No parse for: GO:0032973 amino acid export ! parsing: GO:0032974 ! No parse for: GO:0032974 amino acid export from vacuole ! parsing: GO:0032975 ! No parse for: GO:0032975 amino acid import into vacuole ! parsing: GO:0032978 ! No parse for: GO:0032978 protein insertion into membrane from inner side ! parsing: GO:0032979 ! No parse for: GO:0032979 protein insertion into mitochondrial membrane from inner side ! parsing: GO:0033005 ! Already have xp for: GO:0033005 positive regulation of mast cell activation ! CURRENT : positive regulation of biological process that regulates mast cell activation [cdef(GO:0048518, [regulates=GO:0045576])] ! parsing: GO:0033008 ! Already have xp for: GO:0033008 positive regulation of mast cell activation during immune response ! CURRENT : positive regulation of biological process that regulates mast cell activation during immune response [cdef(GO:0048518, [regulates=GO:0002279])] ! parsing: GO:0033027 ! Already have xp for: GO:0033027 positive regulation of mast cell apoptosis ! CURRENT : positive regulation of biological process that regulates mast cell apoptosis [cdef(GO:0048518, [regulates=GO:0033024])] ! parsing: GO:0033031 ! Already have xp for: GO:0033031 positive regulation of neutrophil apoptosis ! CURRENT : positive regulation of biological process that regulates neutrophil apoptosis [cdef(GO:0048518, [regulates=GO:0001781])] ! parsing: GO:0033034 ! Already have xp for: GO:0033034 positive regulation of myeloid cell apoptosis ! CURRENT : positive regulation of biological process that regulates myeloid cell apoptosis [cdef(GO:0048518, [regulates=GO:0033028])] ! parsing: GO:0033089 ! Already have xp for: GO:0033089 positive regulation of T cell differentiation in the thymus ! CURRENT : positive regulation of biological process that regulates T cell differentiation in the thymus [cdef(GO:0048518, [regulates=GO:0033077])] ! parsing: GO:0033090 ! Already have xp for: GO:0033090 positive regulation of extrathymic T cell differentiation ! CURRENT : positive regulation of biological process that regulates extrathymic T cell differentiation [cdef(GO:0048518, [regulates=GO:0033078])] ! parsing: GO:0033091 ! Already have xp for: GO:0033091 positive regulation of immature T cell proliferation ! CURRENT : positive regulation of biological process that regulates immature T cell proliferation [cdef(GO:0048518, [regulates=GO:0033079])] ! parsing: GO:0033092 ! Already have xp for: GO:0033092 positive regulation of immature T cell proliferation in the thymus ! CURRENT : positive regulation of biological process that regulates immature T cell proliferation in the thymus [cdef(GO:0048518, [regulates=GO:0033080])] ! parsing: GO:0033120 ! Already have xp for: GO:0033120 positive regulation of RNA splicing ! CURRENT : positive regulation of biological process that regulates RNA splicing [cdef(GO:0048518, [regulates=GO:0008380])] ! parsing: GO:0033123 ! Already have xp for: GO:0033123 positive regulation of purine nucleotide catabolic process ! CURRENT : positive regulation of biological process that regulates purine nucleotide catabolic process [cdef(GO:0048518, [regulates=GO:0006195])] ! parsing: GO:0033126 ! Already have xp for: GO:0033126 positive regulation of GTP catabolic process ! CURRENT : positive regulation of biological process that regulates GTP catabolic process [cdef(GO:0048518, [regulates=GO:0006184])] ! parsing: GO:0033129 ! Already have xp for: GO:0033129 positive regulation of histone phosphorylation ! CURRENT : positive regulation of biological process that regulates histone phosphorylation [cdef(GO:0048518, [regulates=GO:0016572])] ! parsing: GO:0033133 ! No parse for: GO:0033133 positive regulation of glucokinase activity ! parsing: GO:0033138 ! Already have xp for: GO:0033138 positive regulation of peptidyl-serine phosphorylation ! CURRENT : positive regulation of biological process that regulates peptidyl-serine phosphorylation [cdef(GO:0048518, [regulates=GO:0018105])] ! parsing: GO:0033141 ! No parse for: GO:0033141 positive regulation of peptidyl-serine phosphorylation of STAT protein ! parsing: GO:0033145 ! Already have xp for: GO:0033145 positive regulation of steroid hormone receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates steroid hormone receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0030518])] ! parsing: GO:0033148 ! Already have xp for: GO:0033148 positive regulation of estrogen receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates estrogen receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0030520])] ! parsing: GO:0033156 ! No parse for: GO:0033156 oligogalacturonide transport ! parsing: GO:0033160 ! No parse for: GO:0033160 positive regulation of protein import into nucleus, translocation ! parsing: GO:0033184 ! Already have xp for: GO:0033184 positive regulation of histone ubiquitination ! CURRENT : positive regulation of biological process that regulates histone ubiquitination [cdef(GO:0048518, [regulates=GO:0016574])] ! parsing: GO:0033235 ! No parse for: GO:0033235 positive regulation of protein sumoylation ! parsing: GO:0033240 ! No parse for: GO:0033240 positive regulation of amine metabolic process ! parsing: GO:0033243 ! No parse for: GO:0033243 positive regulation of amine catabolic process ! parsing: GO:0033246 ! No parse for: GO:0033246 positive regulation of penicillin metabolic process ! parsing: GO:0033249 ! No parse for: GO:0033249 positive regulation of penicillin catabolic process ! parsing: GO:0033343 ! No parse for: GO:0033343 positive regulation of collagen binding ! parsing: GO:0033601 ! No parse for: GO:0033601 positive regulation of mammary gland epithelial cell proliferation ! parsing: GO:0033603 ! No parse for: GO:0033603 positive regulation of dopamine secretion ! parsing: GO:0033605 ! No parse for: GO:0033605 positive regulation of catecholamine secretion ! parsing: GO:0033621 ! No parse for: GO:0033621 mRNA catabolic process, meiosis-specific transcripts ! parsing: GO:0033625 ! No parse for: GO:0033625 positive regulation of integrin activation ! parsing: GO:0033630 ! parse: GO:0033630 using "positive regulation of cell adhesion mediated by integrin complex" => cdef(GO:0045785, [OBO_REL:mediated_by=GO:0008305]) [-2] ! no existing xp def ! def: "Any process that activates or increases the frequency, rate, or extent of cell adhesion mediated by integrin." ! PROPOSED: positive regulation of cell adhesion that OBO_REL:mediated_by integrin complex [cdef(GO:0045785, [OBO_REL:mediated_by=GO:0008305])] [Term] id: GO:0033630 ! positive regulation of cell adhesion mediated by integrin intersection_of: GO:0045785 ! positive regulation of cell adhesion intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex synonym: "up regulation of cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "up regulation of cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] synonym: "up-regulation of cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "up-regulation of cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] synonym: "upregulation of cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "upregulation of cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033630: 3.93 ! parsing: GO:0033634 ! parse: GO:0033634 using "positive regulation of cell-cell adhesion mediated by integrin complex" => cdef(GO:0022409, [OBO_REL:mediated_by=GO:0008305]) [-2] ! no existing xp def ! def: "Any process that activates or increases the frequency, rate, or extent of cell-cell adhesion mediated by integrin." ! PROPOSED: positive regulation of cell-cell adhesion that OBO_REL:mediated_by integrin complex [cdef(GO:0022409, [OBO_REL:mediated_by=GO:0008305])] [Term] id: GO:0033634 ! positive regulation of cell-cell adhesion mediated by integrin intersection_of: GO:0022409 ! positive regulation of cell-cell adhesion intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex synonym: "up regulation of cell-cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "up regulation of cell-cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] synonym: "up-regulation of cell-cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "up-regulation of cell-cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] synonym: "upregulation of cell-cell adhesion by integrin complex" EXACT [OBOL:automatic] synonym: "upregulation of cell-cell adhesion mediated by integrin complex" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033634: 3.78 ! parsing: GO:0033664 ! No parse for: GO:0033664 positive regulation by symbiont of host defense-related protein level ! parsing: GO:0033666 ! No parse for: GO:0033666 positive regulation of growth or development of symbiont within host ! parsing: GO:0033672 ! No parse for: GO:0033672 positive regulation of NAD+ kinase activity ! parsing: GO:0033674 ! No parse for: GO:0033674 positive regulation of kinase activity ! parsing: GO:0033686 ! No parse for: GO:0033686 positive regulation of luteinizing hormone secretion ! parsing: GO:0033690 ! No parse for: GO:0033690 positive regulation of osteoblast proliferation ! parsing: GO:0033697 ! No parse for: GO:0033697 positive regulation of extent of heterochromatin formation ! parsing: GO:0033864 ! No parse for: GO:0033864 positive regulation of NAD(P)H oxidase activity ! parsing: GO:0033955 ! No parse for: GO:0033955 mitochondrial DNA inheritance ! parsing: GO:0033967 ! parse: GO:0033967 using "box C/D snoRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000593]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving box C/D type small nucleolar RNA." ! PROPOSED: metabolic process that OBO_REL:has_participant C_D_box_snoRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000593])] [Term] id: GO:0033967 ! box C/D snoRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000593 ! C_D_box_snoRNA synonym: "C D box snoRNA metabolic process" EXACT [OBOL:automatic] synonym: "C D box snoRNA metabolism" EXACT [OBOL:automatic] synonym: "C/D box snoRNA metabolic process" EXACT [OBOL:automatic] synonym: "C/D box snoRNA metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033967: 2.64 ! parsing: GO:0033979 ! parse: GO:0033979 using "box H/ACA snoRNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000594]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving box H/ACA type small nucleolar RNA." ! PROPOSED: metabolic process that OBO_REL:has_participant H_ACA_box_snoRNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000594])] [Term] id: GO:0033979 ! box H/ACA snoRNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000594 ! H_ACA_box_snoRNA synonym: "H ACA box snoRNA metabolic process" EXACT [OBOL:automatic] synonym: "H ACA box snoRNA metabolism" EXACT [OBOL:automatic] synonym: "H/ACA box snoRNA metabolic process" EXACT [OBOL:automatic] synonym: "H/ACA box snoRNA metabolism" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033979: 2.62 ! parsing: GO:0034049 ! No parse for: GO:0034049 positive regulation of protein phosphatase type 2A activity ! parsing: GO:0034052 ! No parse for: GO:0034052 positive regulation of plant-type hypersensitive response ! parsing: GO:0034055 ! No parse for: GO:0034055 positive regulation by symbiont of host defense-related programmed cell death ! parsing: GO:0034080 ! parse: GO:0034080 using "DNA replication-independent nucleosome assembly at centromere" => cdef(GO:0006336, [OBO_REL:unfolds_around=SO:0000577]) [-2] ! no existing xp def ! def: "The formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin; occurs outside the context of DNA replication." ! PROPOSED: DNA replication-independent nucleosome assembly that OBO_REL:unfolds_around centromere [cdef(GO:0006336, [OBO_REL:unfolds_around=SO:0000577])] [Term] id: GO:0034080 ! DNA replication-independent nucleosome assembly at centromere intersection_of: GO:0006336 ! DNA replication-independent nucleosome assembly intersection_of: OBO_REL:unfolds_around SO:0000577 ! centromere ! seconds spent parsing GO:0034080: 3.19 ! parsing: GO:0034093 ! No parse for: GO:0034093 positive regulation of maintenance of sister chromatid cohesion ! parsing: GO:0034096 ! No parse for: GO:0034096 positive regulation of maintenance of meiotic sister chromatid cohesion ! parsing: GO:0034105 ! No parse for: GO:0034105 positive regulation of tissue remodeling ! parsing: GO:0034108 ! No parse for: GO:0034108 positive regulation of erythrocyte clearance ! parsing: GO:0034112 ! No parse for: GO:0034112 positive regulation of homotypic cell-cell adhesion ! parsing: GO:0034116 ! No parse for: GO:0034116 positive regulation of heterotypic cell-cell adhesion ! parsing: GO:0034120 ! No parse for: GO:0034120 positive regulation of erythrocyte aggregation ! parsing: GO:0034123 ! No parse for: GO:0034123 positive regulation of toll-like receptor signaling pathway ! parsing: GO:0034126 ! No parse for: GO:0034126 positive regulation of MyD88-dependent toll-like receptor signaling pathway ! parsing: GO:0034129 ! No parse for: GO:0034129 positive regulation of MyD88-independent toll-like receptor signaling pathway ! parsing: GO:0034133 ! No parse for: GO:0034133 positive regulation of toll-like receptor 1 signaling pathway ! parsing: GO:0034137 ! No parse for: GO:0034137 positive regulation of toll-like receptor 2 signaling pathway ! parsing: GO:0034141 ! No parse for: GO:0034141 positive regulation of toll-like receptor 3 signaling pathway ! parsing: GO:0034145 ! No parse for: GO:0034145 positive regulation of toll-like receptor 4 signaling pathway ! parsing: GO:0034149 ! No parse for: GO:0034149 positive regulation of toll-like receptor 5 signaling pathway ! parsing: GO:0034153 ! No parse for: GO:0034153 positive regulation of toll-like receptor 6 signaling pathway ! parsing: GO:0034157 ! No parse for: GO:0034157 positive regulation of toll-like receptor 7 signaling pathway ! parsing: GO:0034161 ! No parse for: GO:0034161 positive regulation of toll-like receptor 8 signaling pathway ! parsing: GO:0034165 ! No parse for: GO:0034165 positive regulation of toll-like receptor 9 signaling pathway ! parsing: GO:0034169 ! No parse for: GO:0034169 positive regulation of toll-like receptor 10 signaling pathway ! parsing: GO:0034173 ! No parse for: GO:0034173 positive regulation of toll-like receptor 11 signaling pathway ! parsing: GO:0034177 ! No parse for: GO:0034177 positive regulation of toll-like receptor 12 signaling pathway ! parsing: GO:0034181 ! No parse for: GO:0034181 positive regulation of toll-like receptor 13 signaling pathway ! parsing: GO:0034184 ! No parse for: GO:0034184 positive regulation of maintenance of mitotic sister chromatid cohesion ! parsing: GO:0034219 ! parse: GO:0034219 using "transmembrane carbohydrate transport" => cdef(GO:0008643, [OBO_REL:results_in_transport_of=GO:0016021]) [-2] ! no existing xp def ! def: "The process whereby a carbohydrate is transported from one side of a membrane to the other." ! PROPOSED: carbohydrate transport that OBO_REL:results_in_transport_of integral to membrane [cdef(GO:0008643, [OBO_REL:results_in_transport_of=GO:0016021])] [Term] id: GO:0034219 ! transmembrane carbohydrate transport intersection_of: GO:0008643 ! carbohydrate transport intersection_of: OBO_REL:results_in_transport_of GO:0016021 ! integral to membrane synonym: "integral to membrane carbohydrate transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0034219: 2.42 ! parsing: GO:0034220 ! parse: GO:0034220 using "transmembrane ion transport" => cdef(GO:0006811, [OBO_REL:results_in_transport_of=GO:0016021]) [-2] ! no existing xp def ! def: "The process whereby an ion is transported from one side of a membrane to the other." ! PROPOSED: ion transport that OBO_REL:results_in_transport_of integral to membrane [cdef(GO:0006811, [OBO_REL:results_in_transport_of=GO:0016021])] [Term] id: GO:0034220 ! transmembrane ion transport intersection_of: GO:0006811 ! ion transport intersection_of: OBO_REL:results_in_transport_of GO:0016021 ! integral to membrane synonym: "integral to membrane ion transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0034220: 2.43 ! parsing: GO:0034227 ! No parse for: GO:0034227 tRNA thio-modification ! parsing: GO:0034230 ! No parse for: GO:0034230 enkephalin processing ! parsing: GO:0034241 ! No parse for: GO:0034241 positive regulation of macrophage fusion ! parsing: GO:0034247 ! parse: GO:0034247 using "snoRNA splicing" => cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000275])]) [-3] ! no existing xp def ! def: "The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA." ! PROPOSED: biopolymer metabolic process that OBO_REL:results_in_removal_of cdef(SO:0000001, [OBO_REL:part_of=SO:0000275]) [cdef(GO:0043283, [OBO_REL:results_in_removal_of=cdef(SO:0000001, [OBO_REL:part_of=SO:0000275])])] [Term] id: GO:0034247 ! snoRNA splicing intersection_of: GO:0043283 ! biopolymer metabolic process intersection_of: OBO_REL:results_in_removal_of _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000275___ synonym: "small nucleolar RNA splicing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0034247: 1.69 ! parsing: GO:0034250 ! No parse for: GO:0034250 positive regulation of amide metabolic process ! parsing: GO:0034253 ! No parse for: GO:0034253 positive regulation of amide catabolic process ! parsing: GO:0034346 ! No parse for: GO:0034346 positive regulation of type III interferon production ! parsing: GO:0034352 ! No parse for: GO:0034352 positive regulation of glial cell apoptosis ! parsing: GO:0034393 ! No parse for: GO:0034393 positive regulation of smooth muscle cell apoptosis ! parsing: GO:0035008 ! Already have xp for: GO:0035008 positive regulation of melanization defense response ! CURRENT : positive regulation of biological process that regulates melanization defense response [cdef(GO:0048518, [regulates=GO:0035006])] ! parsing: GO:0035022 ! Already have xp for: GO:0035022 positive regulation of Rac protein signal transduction ! CURRENT : positive regulation of biological process that regulates Rac protein signal transduction [cdef(GO:0048518, [regulates=GO:0016601])] ! parsing: GO:0035025 ! Already have xp for: GO:0035025 positive regulation of Rho protein signal transduction ! CURRENT : positive regulation of biological process that regulates Rho protein signal transduction [cdef(GO:0048518, [regulates=GO:0007266])] ! parsing: GO:0035057 ! No parse for: GO:0035057 positive regulation of nuclear mRNA splicing via U2-type spliceosome ! parsing: GO:0035066 ! Already have xp for: GO:0035066 positive regulation of histone acetylation ! CURRENT : positive regulation of biological process that regulates histone acetylation [cdef(GO:0048518, [regulates=GO:0016573])] ! parsing: GO:0035104 ! No parse for: GO:0035104 positive regulation of sterol regulatory element binding protein target gene transcription ! parsing: GO:0035106 ! No parse for: GO:0035106 operant conditioning ! parsing: GO:0035154 ! No parse for: GO:0035154 terminal cell fate specification, open tracheal system ! parsing: GO:0035178 ! No parse for: GO:0035178 turning behavior ! parsing: GO:0035195 ! parse: GO:0035195 using "gene silencing by miRNA" => cdef(GO:0016458, [OBO_REL:mediated_by=SO:0000276]) [-2] ! no existing xp def ! def: "Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression." ! PROPOSED: gene silencing that OBO_REL:mediated_by miRNA [cdef(GO:0016458, [OBO_REL:mediated_by=SO:0000276])] [Term] id: GO:0035195 ! gene silencing by miRNA intersection_of: GO:0016458 ! gene silencing intersection_of: OBO_REL:mediated_by SO:0000276 ! miRNA synonym: "micro RNA mediated gene silencing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0035195: 4.71 ! parsing: GO:0035196 ! parse: GO:0035196 using "miRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000276]) [-2] ! no existing xp def ! def: "Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to miRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000276])] [Term] id: GO:0035196 ! gene silencing by miRNA, production of miRNAs intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000276 ! miRNA synonym: "micro RNA modification" EXACT [OBOL:automatic] synonym: "micro RNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0035196: 7.57 ! parsing: GO:0035205 ! Already have xp for: GO:0035205 positive regulation of lamellocyte differentiation ! CURRENT : positive regulation of biological process that regulates lamellocyte differentiation [cdef(GO:0048518, [regulates=GO:0035171])] ! parsing: GO:0035208 ! Already have xp for: GO:0035208 positive regulation of hemocyte proliferation ! CURRENT : positive regulation of biological process that regulates hemocyte proliferation [cdef(GO:0048518, [regulates=GO:0035172])] ! parsing: GO:0035229 ! No parse for: GO:0035229 positive regulation of glutamate-cysteine ligase activity ! parsing: GO:0035245 ! No parse for: GO:0035245 peptidyl-arginine C-methylation ! parsing: GO:0035246 ! No parse for: GO:0035246 peptidyl-arginine N-methylation ! parsing: GO:0035247 ! No parse for: GO:0035247 peptidyl-arginine omega-N-methylation ! parsing: GO:0035278 ! No parse for: GO:0035278 gene silencing by miRNA, negative regulation of translation ! parsing: GO:0035279 ! No parse for: GO:0035279 gene silencing by miRNA, mRNA cleavage ! parsing: GO:0035280 ! No parse for: GO:0035280 gene silencing by miRNA, miRNA loading onto RISC ! parsing: GO:0035306 ! Already have xp for: GO:0035306 positive regulation of dephosphorylation ! CURRENT : positive regulation of biological process that regulates dephosphorylation [cdef(GO:0048518, [regulates=GO:0016311])] ! parsing: GO:0035307 ! Already have xp for: GO:0035307 positive regulation of protein amino acid dephosphorylation ! CURRENT : positive regulation of biological process that regulates protein amino acid dephosphorylation [cdef(GO:0048518, [regulates=GO:0006470])] ! parsing: GO:0040010 ! No parse for: GO:0040010 positive regulation of growth rate ! parsing: GO:0040017 ! Already have xp for: GO:0040017 positive regulation of locomotion ! CURRENT : positive regulation of biological process that regulates locomotion [cdef(GO:0048518, [regulates=GO:0040011])] ! parsing: GO:0040018 ! No parse for: GO:0040018 positive regulation of multicellular organism growth ! parsing: GO:0040019 ! Already have xp for: GO:0040019 positive regulation of embryonic development ! CURRENT : positive regulation of biological process that regulates embryonic development [cdef(GO:0048518, [regulates=GO:0009790])] ! parsing: GO:0040023 ! No parse for: GO:0040023 establishment of nucleus localization ! parsing: GO:0040026 ! Already have xp for: GO:0040026 positive regulation of vulval development ! CURRENT : positive regulation of biological process that regulates vulval development [cdef(GO:0048518, [regulates=GO:0040025])] ! parsing: GO:0040031 ! parse: GO:0040031 using "snRNA modification" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000274]) [-2] ! no existing xp def ! def: "The covalent alteration of one or more nucleotides within snRNA, resulting in a change in the properties of the snRNA." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to snRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000274])] [Term] id: GO:0040031 ! snRNA modification intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000274 ! snRNA synonym: "small nuclear RNA modification" EXACT [OBOL:automatic] synonym: "small nuclear RNA processing" EXACT [OBOL:automatic] synonym: "snRNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0040031: 1.56 ! parsing: GO:0042000 ! No parse for: GO:0042000 translocation of peptides or proteins into host ! parsing: GO:0042034 ! No parse for: GO:0042034 peptidyl-lysine esterification ! parsing: GO:0042037 ! No parse for: GO:0042037 peptidyl-histidine methylation, to form pros-methylhistidine ! parsing: GO:0042038 ! No parse for: GO:0042038 peptidyl-histidine methylation, to form tele-methylhistidine ! parsing: GO:0042040 ! No parse for: GO:0042040 metal incorporation into metallo-molybdopterin complex ! parsing: GO:0042102 ! Already have xp for: GO:0042102 positive regulation of T cell proliferation ! CURRENT : positive regulation of biological process that regulates T cell proliferation [cdef(GO:0048518, [regulates=GO:0042098])] ! parsing: GO:0042103 ! Already have xp for: GO:0042103 positive regulation of T cell homeostatic proliferation ! CURRENT : positive regulation of biological process that regulates T cell homeostatic proliferation [cdef(GO:0048518, [regulates=GO:0001777])] ! parsing: GO:0042104 ! Already have xp for: GO:0042104 positive regulation of activated T cell proliferation ! CURRENT : positive regulation of biological process that regulates activated T cell proliferation [cdef(GO:0048518, [regulates=GO:0050798])] ! parsing: GO:0042108 ! Already have xp for: GO:0042108 positive regulation of cytokine biosynthetic process ! CURRENT : positive regulation of biological process that regulates cytokine biosynthetic process [cdef(GO:0048518, [regulates=GO:0042089])] ! parsing: GO:0042148 ! No parse for: GO:0042148 strand invasion ! parsing: GO:0042150 ! No parse for: GO:0042150 plasmid recombination ! parsing: GO:0042219 ! No parse for: GO:0042219 amino acid derivative catabolic process ! parsing: GO:0042259 ! No parse for: GO:0042259 peptidyl-L-beta-methylthioasparagine biosynthetic process from peptidyl-asparagine ! parsing: GO:0042264 ! No parse for: GO:0042264 peptidyl-aspartic acid hydroxylation ! parsing: GO:0042265 ! No parse for: GO:0042265 peptidyl-asparagine hydroxylation ! parsing: GO:0042276 ! No parse for: GO:0042276 error-prone postreplication DNA repair ! parsing: GO:0042307 ! Already have xp for: GO:0042307 positive regulation of protein import into nucleus ! CURRENT : positive regulation of biological process that regulates protein import into nucleus [cdef(GO:0048518, [regulates=GO:0006606])] ! parsing: GO:0042311 ! No parse for: GO:0042311 vasodilation ! parsing: GO:0042327 ! Already have xp for: GO:0042327 positive regulation of phosphorylation ! CURRENT : positive regulation of biological process that regulates phosphorylation [cdef(GO:0048518, [regulates=GO:0016310])] ! parsing: GO:0042346 ! Already have xp for: GO:0042346 positive regulation of NF-kappaB import into nucleus ! CURRENT : positive regulation of biological process that regulates NF-kappaB import into nucleus [cdef(GO:0048518, [regulates=GO:0042348])] ! parsing: GO:0042398 ! No parse for: GO:0042398 amino acid derivative biosynthetic process ! parsing: GO:0042479 ! Already have xp for: GO:0042479 positive regulation of eye photoreceptor cell development ! CURRENT : positive regulation of biological process that regulates eye photoreceptor cell development [cdef(GO:0048518, [regulates=GO:0042462])] ! parsing: GO:0042482 ! Already have xp for: GO:0042482 positive regulation of odontogenesis ! CURRENT : positive regulation of biological process that regulates odontogenesis [cdef(GO:0048518, [regulates=GO:0042476])] ! parsing: GO:0042485 ! Already have xp for: GO:0042485 positive regulation of odontogenesis of calcareous or chitinous tooth ! CURRENT : positive regulation of biological process that regulates odontogenesis of calcareous or chitinous tooth [cdef(GO:0048518, [regulates=GO:0042477])] ! parsing: GO:0042488 ! Already have xp for: GO:0042488 positive regulation of odontogenesis of dentine-containing teeth ! CURRENT : positive regulation of biological process that regulates odontogenesis of dentine-containing teeth [cdef(GO:0048518, [regulates=GO:0042475])] ! parsing: GO:0042511 ! No parse for: GO:0042511 positive regulation of tyrosine phosphorylation of Stat1 protein ! parsing: GO:0042515 ! No parse for: GO:0042515 positive regulation of tyrosine phosphorylation of Stat2 protein ! parsing: GO:0042517 ! No parse for: GO:0042517 positive regulation of tyrosine phosphorylation of Stat3 protein ! parsing: GO:0042520 ! No parse for: GO:0042520 positive regulation of tyrosine phosphorylation of Stat4 protein ! parsing: GO:0042523 ! No parse for: GO:0042523 positive regulation of tyrosine phosphorylation of Stat5 protein ! parsing: GO:0042526 ! No parse for: GO:0042526 positive regulation of tyrosine phosphorylation of Stat6 protein ! parsing: GO:0042529 ! No parse for: GO:0042529 positive regulation of tyrosine phosphorylation of Stat7 protein ! parsing: GO:0042531 ! Already have xp for: GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein ! CURRENT : positive regulation of biological process that regulates tyrosine phosphorylation of STAT protein [cdef(GO:0048518, [regulates=GO:0007260])] ! parsing: GO:0042535 ! Already have xp for: GO:0042535 positive regulation of tumor necrosis factor biosynthetic process ! CURRENT : positive regulation of biological process that regulates tumor necrosis factor biosynthetic process [cdef(GO:0048518, [regulates=GO:0042533])] ! parsing: GO:0042635 ! Already have xp for: GO:0042635 positive regulation of hair cycle ! CURRENT : positive regulation of biological process that regulates hair cycle [cdef(GO:0048518, [regulates=GO:0042633])] ! parsing: GO:0042655 ! No parse for: GO:0042655 activation of JNKKK activity ! parsing: GO:0042660 ! Already have xp for: GO:0042660 positive regulation of cell fate specification ! CURRENT : positive regulation of biological process that regulates cell fate specification [cdef(GO:0048518, [regulates=GO:0001708])] ! parsing: GO:0042691 ! Already have xp for: GO:0042691 positive regulation of crystal cell differentiation ! CURRENT : positive regulation of biological process that regulates crystal cell differentiation [cdef(GO:0048518, [regulates=GO:0042688])] ! parsing: GO:0042753 ! Already have xp for: GO:0042753 positive regulation of circadian rhythm ! CURRENT : positive regulation of biological process that regulates circadian rhythm [cdef(GO:0048518, [regulates=GO:0007623])] ! parsing: GO:0042778 ! No parse for: GO:0042778 tRNA end turnover ! parsing: GO:0042780 ! No parse for: GO:0042780 tRNA 3'-end processing ! parsing: GO:0042789 ! parse: GO:0042789 using "mRNA transcription from Pol II promoter" => cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000234]) [-2] ! parse: GO:0042789 using "mRNA transcription from RNA polymerase II promoter" => cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000234]) [-2] ! no existing xp def ! def: "The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter." ! PROPOSED: transcription from RNA polymerase II promoter that OBO_REL:results_in_formation_of mRNA [cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000234])] [Term] id: GO:0042789 ! mRNA transcription from RNA polymerase II promoter intersection_of: GO:0006366 ! transcription from RNA polymerase II promoter intersection_of: OBO_REL:results_in_formation_of SO:0000234 ! mRNA synonym: "messenger RNA transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "messenger RNA transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042789: 8.12 ! parsing: GO:0042790 ! No parse for: GO:0042790 transcription of nuclear rRNA large RNA polymerase I transcript ! parsing: GO:0042791 ! parse: GO:0042791 using "5S rRNA transcription" => cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000652]) [-2] ! no existing xp def ! def: "The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template." ! PROPOSED: transcription that OBO_REL:results_in_formation_of rRNA_5S [cdef(GO:0006350, [OBO_REL:results_in_formation_of=SO:0000652])] [Term] id: GO:0042791 ! 5S class rRNA transcription intersection_of: GO:0006350 ! transcription intersection_of: OBO_REL:results_in_formation_of SO:0000652 ! rRNA_5S synonym: "5 S LSU rRNA transcription" EXACT [OBOL:automatic] synonym: "5 S rRNA transcription" EXACT [OBOL:automatic] synonym: "5 S ribosomal RNA transcription" EXACT [OBOL:automatic] synonym: "rRNA 5 S transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042791: 3.35 ! parsing: GO:0042792 ! parse: GO:0042792 using "rRNA transcription from mitochondrial promoter" => cdef(GO:0006390, [OBO_REL:results_in_formation_of=SO:0000252]) [-2] ! no existing xp def ! def: "The synthesis of ribosomal RNA (rRNA) from a mitochondrial DNA template." ! PROPOSED: transcription from mitochondrial promoter that OBO_REL:results_in_formation_of rRNA [cdef(GO:0006390, [OBO_REL:results_in_formation_of=SO:0000252])] [Term] id: GO:0042792 ! rRNA transcription from mitochondrial promoter intersection_of: GO:0006390 ! transcription from mitochondrial promoter intersection_of: OBO_REL:results_in_formation_of SO:0000252 ! rRNA synonym: "rRNA mitochondrial transcription" EXACT [OBOL:automatic] synonym: "ribosomal RNA mitochondrial transcription" EXACT [OBOL:automatic] synonym: "ribosomal RNA transcription from mitochondrial promoter" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid mitochondrial transcription" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid transcription from mitochondrial promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042792: 4.07 ! parsing: GO:0042793 ! No parse for: GO:0042793 transcription from plastid promoter ! parsing: GO:0042794 ! parse: GO:0042794 using "rRNA transcription from plastid promoter" => cdef(GO:0042793, [OBO_REL:results_in_formation_of=SO:0000252]) [-2] ! no existing xp def ! def: "The synthesis of ribosomal RNA (rRNA) from a plastid DNA template, usually by a specific plastid RNA polymerase." ! PROPOSED: transcription from plastid promoter that OBO_REL:results_in_formation_of rRNA [cdef(GO:0042793, [OBO_REL:results_in_formation_of=SO:0000252])] [Term] id: GO:0042794 ! rRNA transcription from plastid promoter intersection_of: GO:0042793 ! transcription from plastid promoter intersection_of: OBO_REL:results_in_formation_of SO:0000252 ! rRNA synonym: "rRNA plastid transcription" EXACT [OBOL:automatic] synonym: "ribosomal RNA plastid transcription" EXACT [OBOL:automatic] synonym: "ribosomal RNA transcription from plastid promoter" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid plastid transcription" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid transcription from plastid promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042794: 4.06 ! parsing: GO:0042795 ! parse: GO:0042795 using "snRNA transcription from Pol II promoter" => cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000274]) [-2] ! parse: GO:0042795 using "snRNA transcription from RNA polymerase II promoter" => cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000274]) [-2] ! no existing xp def ! def: "The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter." ! PROPOSED: transcription from RNA polymerase II promoter that OBO_REL:results_in_formation_of snRNA [cdef(GO:0006366, [OBO_REL:results_in_formation_of=SO:0000274])] [Term] id: GO:0042795 ! snRNA transcription from RNA polymerase II promoter intersection_of: GO:0006366 ! transcription from RNA polymerase II promoter intersection_of: OBO_REL:results_in_formation_of SO:0000274 ! snRNA synonym: "small nuclear RNA transcription from Pol II promoter" EXACT [OBOL:automatic] synonym: "small nuclear RNA transcription from RNA polymerase II promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042795: 8.12 ! parsing: GO:0042796 ! parse: GO:0042796 using "snRNA transcription from Pol III promoter" => cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000274]) [-2] ! parse: GO:0042796 using "snRNA transcription from RNA polymerase III promoter" => cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000274]) [-2] ! no existing xp def ! def: "The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase III (Pol III), originating at a Pol III promoter." ! PROPOSED: transcription from RNA polymerase III promoter that OBO_REL:results_in_formation_of snRNA [cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000274])] [Term] id: GO:0042796 ! snRNA transcription from RNA polymerase III promoter intersection_of: GO:0006383 ! transcription from RNA polymerase III promoter intersection_of: OBO_REL:results_in_formation_of SO:0000274 ! snRNA synonym: "small nuclear RNA transcription from Pol III promoter" EXACT [OBOL:automatic] synonym: "small nuclear RNA transcription from RNA polymerase III promoter" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042796: 8.12 ! parsing: GO:0042797 ! parse: GO:0042797 using "tRNA transcription from Pol III promoter" => cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000253]) [-2] ! parse: GO:0042797 using "tRNA transcription from RNA polymerase III promoter" => cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000253]) [-2] ! no existing xp def ! def: "The synthesis of transfer RNA (tRNA) from a DNA template by RNA Polymerase III (Pol III), originating at a Pol III promoter." ! PROPOSED: transcription from RNA polymerase III promoter that OBO_REL:results_in_formation_of tRNA [cdef(GO:0006383, [OBO_REL:results_in_formation_of=SO:0000253])] [Term] id: GO:0042797 ! tRNA transcription from RNA polymerase III promoter intersection_of: GO:0006383 ! transcription from RNA polymerase III promoter intersection_of: OBO_REL:results_in_formation_of SO:0000253 ! tRNA ! seconds spent parsing GO:0042797: 8.12 ! parsing: GO:0042868 ! parse: GO:0042868 using "antisense RNA metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000644]) [-2] ! parse: GO:0042868 using "antisense RNA metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0000644]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis." ! PROPOSED: metabolic process that OBO_REL:has_participant antisense_RNA [cdef(GO:0008152, [OBO_REL:has_participant=SO:0000644])] [Term] id: GO:0042868 ! antisense RNA metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0000644 ! antisense_RNA ! seconds spent parsing GO:0042868: 10.93 ! parsing: GO:0042894 ! No parse for: GO:0042894 fosmidomycin transport ! parsing: GO:0042902 ! No parse for: GO:0042902 peptidoglycan-protein cross-linking via L-threonyl-pentaglycyl-murein ! parsing: GO:0042963 ! No parse for: GO:0042963 phage assembly ! parsing: GO:0042976 ! No parse for: GO:0042976 activation of Janus kinase activity ! parsing: GO:0042986 ! Already have xp for: GO:0042986 positive regulation of amyloid precursor protein biosynthetic process ! CURRENT : positive regulation of biological process that regulates amyloid precursor protein biosynthetic process [cdef(GO:0048518, [regulates=GO:0042983])] ! parsing: GO:0042991 ! No parse for: GO:0042991 transcription factor import into nucleus ! parsing: GO:0042993 ! Already have xp for: GO:0042993 positive regulation of transcription factor import into nucleus ! CURRENT : positive regulation of biological process that regulates transcription factor import into nucleus [cdef(GO:0048518, [regulates=GO:0042991])] ! parsing: GO:0042994 ! No parse for: GO:0042994 cytoplasmic sequestering of transcription factor ! parsing: GO:0042998 ! Already have xp for: GO:0042998 positive regulation of Golgi to plasma membrane protein transport ! CURRENT : positive regulation of biological process that regulates Golgi to plasma membrane protein transport [cdef(GO:0048518, [regulates=GO:0043001])] ! parsing: GO:0043003 ! Already have xp for: GO:0043003 positive regulation of Golgi to plasma membrane CFTR protein transport ! CURRENT : positive regulation of biological process that regulates Golgi to plasma membrane CFTR protein transport [cdef(GO:0048518, [regulates=GO:0043000])] ! parsing: GO:0043017 ! Already have xp for: GO:0043017 positive regulation of lymphotoxin A biosynthetic process ! CURRENT : positive regulation of biological process that regulates lymphotoxin A biosynthetic process [cdef(GO:0048518, [regulates=GO:0042109])] ! parsing: GO:0043032 ! Already have xp for: GO:0043032 positive regulation of macrophage activation ! CURRENT : positive regulation of biological process that regulates macrophage activation [cdef(GO:0048518, [regulates=GO:0042116])] ! parsing: GO:0043038 ! No parse for: GO:0043038 amino acid activation ! parsing: GO:0043039 ! No parse for: GO:0043039 tRNA aminoacylation ! parsing: GO:0043040 ! No parse for: GO:0043040 tRNA aminoacylation for nonribosomal peptide biosynthetic process ! parsing: GO:0043042 ! No parse for: GO:0043042 amino acid adenylylation by nonribosomal peptide synthase ! parsing: GO:0043043 ! parse: GO:0043043 using "peptide anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0043043 using "peptide anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0043043 using "peptide biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0043043 using "peptide biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0043043 using "peptide biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0043043 using "peptide biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0043043 using "peptide formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0043043 using "peptide formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! parse: GO:0043043 using "peptide synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:16670]) [-2] ! parse: GO:0043043 using "peptide synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of active_peptide [cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001064])] [Term] id: GO:0043043 ! peptide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0001064 ! active_peptide synonym: "active peptide anabolism" EXACT [OBOL:automatic] synonym: "active peptide biosynthesis" EXACT [OBOL:automatic] synonym: "active peptide biosynthetic process" EXACT [OBOL:automatic] synonym: "active peptide formation" EXACT [OBOL:automatic] synonym: "active peptide synthesis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043043: 20.83 ! parsing: GO:0043065 ! Already have xp for: GO:0043065 positive regulation of apoptosis ! CURRENT : positive regulation of biological process that regulates apoptosis [cdef(GO:0048518, [regulates=GO:0006915])] ! parsing: GO:0043068 ! Already have xp for: GO:0043068 positive regulation of programmed cell death ! CURRENT : positive regulation of biological process that regulates programmed cell death [cdef(GO:0048518, [regulates=GO:0012501])] ! parsing: GO:0043071 ! Already have xp for: GO:0043071 positive regulation of non-apoptotic programmed cell death ! CURRENT : positive regulation of biological process that regulates non-apoptotic programmed cell death [cdef(GO:0048518, [regulates=GO:0016244])] ! parsing: GO:0043077 ! No parse for: GO:0043077 initiation of acetate catabolic process ! parsing: GO:0043085 ! No parse for: GO:0043085 positive regulation of catalytic activity ! parsing: GO:0043089 ! No parse for: GO:0043089 positive regulation of Cdc42 GTPase activity ! parsing: GO:0043090 ! No parse for: GO:0043090 amino acid import ! parsing: GO:0043102 ! No parse for: GO:0043102 amino acid salvage ! parsing: GO:0043104 ! No parse for: GO:0043104 positive regulation of GTP cyclohydrolase I activity ! parsing: GO:0043117 ! No parse for: GO:0043117 positive regulation of vascular permeability ! parsing: GO:0043123 ! Already have xp for: GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade ! CURRENT : positive regulation of biological process that regulates I-kappaB kinase/NF-kappaB cascade [cdef(GO:0048518, [regulates=GO:0007249])] ! parsing: GO:0043128 ! No parse for: GO:0043128 positive regulation of 1-phosphatidylinositol 4-kinase activity ! parsing: GO:0043144 ! parse: GO:0043144 using "snoRNA processing" => cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000275]) [-2] ! no existing xp def ! def: "Any process involved in the conversion of a primary small nucleolar RNA (snoRNA) transcript into a mature snoRNA." ! PROPOSED: metabolic process that OBO_REL:results_in_change_to snoRNA [cdef(GO:0008152, [OBO_REL:results_in_change_to=SO:0000275])] [Term] id: GO:0043144 ! snoRNA processing intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_change_to SO:0000275 ! snoRNA synonym: "small nucleolar RNA modification" EXACT [OBOL:automatic] synonym: "small nucleolar RNA processing" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043144: 1.57 ! parsing: GO:0043145 ! No parse for: GO:0043145 snoRNA 3' end cleavage ! parsing: GO:0043171 ! parse: GO:0043171 using "peptide breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0043171 using "peptide breakdown" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0043171 using "peptide catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0043171 using "peptide catabolic process" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0043171 using "peptide catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0043171 using "peptide catabolism" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! parse: GO:0043171 using "peptide degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=CHEBI:16670]) [-2] ! parse: GO:0043171 using "peptide degradation" => cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001064]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." ! PROPOSED: catabolic process that OBO_REL:results_in_breakdown_of active_peptide [cdef(GO:0009056, [OBO_REL:results_in_breakdown_of=SO:0001064])] [Term] id: GO:0043171 ! peptide catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: OBO_REL:results_in_breakdown_of SO:0001064 ! active_peptide synonym: "active peptide breakdown" EXACT [OBOL:automatic] synonym: "active peptide catabolic process" EXACT [OBOL:automatic] synonym: "active peptide catabolism" EXACT [OBOL:automatic] synonym: "active peptide degradation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043171: 17.34 ! parsing: GO:0043193 ! No parse for: GO:0043193 positive regulation of gene-specific transcription ! parsing: GO:0043243 ! Already have xp for: GO:0043243 positive regulation of protein complex disassembly ! CURRENT : positive regulation of biological process that regulates protein complex disassembly [cdef(GO:0048518, [regulates=GO:0043241])] ! parsing: GO:0043247 ! No parse for: GO:0043247 telomere maintenance in response to DNA damage ! parsing: GO:0043267 ! Already have xp for: GO:0043267 negative regulation of potassium ion transport ! CURRENT : negative regulation of biological process that regulates potassium ion transport [cdef(GO:0048519, [regulates=GO:0006813])] ! parsing: GO:0043268 ! Already have xp for: GO:0043268 positive regulation of potassium ion transport ! CURRENT : positive regulation of biological process that regulates potassium ion transport [cdef(GO:0048518, [regulates=GO:0006813])] ! parsing: GO:0043270 ! Already have xp for: GO:0043270 positive regulation of ion transport ! CURRENT : positive regulation of biological process that regulates ion transport [cdef(GO:0048518, [regulates=GO:0006811])] ! parsing: GO:0043280 ! No parse for: GO:0043280 positive regulation of caspase activity ! parsing: GO:0043302 ! Already have xp for: GO:0043302 positive regulation of leukocyte degranulation ! CURRENT : positive regulation of biological process that regulates leukocyte degranulation [cdef(GO:0048518, [regulates=GO:0043299])] ! parsing: GO:0043306 ! Already have xp for: GO:0043306 positive regulation of mast cell degranulation ! CURRENT : positive regulation of biological process that regulates mast cell degranulation [cdef(GO:0048518, [regulates=GO:0043303])] ! parsing: GO:0043311 ! Already have xp for: GO:0043311 positive regulation of eosinophil degranulation ! CURRENT : positive regulation of biological process that regulates eosinophil degranulation [cdef(GO:0048518, [regulates=GO:0043308])] ! parsing: GO:0043315 ! Already have xp for: GO:0043315 positive regulation of neutrophil degranulation ! CURRENT : positive regulation of biological process that regulates neutrophil degranulation [cdef(GO:0048518, [regulates=GO:0043312])] ! parsing: GO:0043319 ! Already have xp for: GO:0043319 positive regulation of cytotoxic T cell degranulation ! CURRENT : positive regulation of biological process that regulates cytotoxic T cell degranulation [cdef(GO:0048518, [regulates=GO:0043316])] ! parsing: GO:0043323 ! Already have xp for: GO:0043323 positive regulation of natural killer cell degranulation ! CURRENT : positive regulation of biological process that regulates natural killer cell degranulation [cdef(GO:0048518, [regulates=GO:0043320])] ! parsing: GO:0043368 ! No parse for: GO:0043368 positive T cell selection ! parsing: GO:0043372 ! No parse for: GO:0043372 positive regulation of CD4-positive, alpha beta T cell differentiation ! parsing: GO:0043378 ! No parse for: GO:0043378 positive regulation of CD8-positive, alpha-beta T cell differentiation ! parsing: GO:0043382 ! Already have xp for: GO:0043382 positive regulation of memory T cell differentiation ! CURRENT : positive regulation of biological process that regulates memory T cell differentiation [cdef(GO:0048518, [regulates=GO:0043379])] ! parsing: GO:0043388 ! No parse for: GO:0043388 positive regulation of DNA binding ! parsing: GO:0043406 ! No parse for: GO:0043406 positive regulation of MAP kinase activity ! parsing: GO:0043410 ! Already have xp for: GO:0043410 positive regulation of MAPKKK cascade ! CURRENT : positive regulation of biological process that regulates MAPKKK cascade [cdef(GO:0048518, [regulates=GO:0000165])] ! parsing: GO:0043415 ! Already have xp for: GO:0043415 positive regulation of skeletal muscle regeneration ! CURRENT : positive regulation of biological process that regulates skeletal muscle regeneration [cdef(GO:0048518, [regulates=GO:0043403])] ! parsing: GO:0043507 ! No parse for: GO:0043507 positive regulation of JNK activity ! parsing: GO:0043517 ! No parse for: GO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator ! parsing: GO:0043525 ! Already have xp for: GO:0043525 positive regulation of neuron apoptosis ! CURRENT : positive regulation of biological process that regulates neuron apoptosis [cdef(GO:0048518, [regulates=GO:0051402])] ! parsing: GO:0043536 ! Already have xp for: GO:0043536 positive regulation of blood vessel endothelial cell migration ! CURRENT : positive regulation of biological process that regulates blood vessel endothelial cell migration [cdef(GO:0048518, [regulates=GO:0043534])] ! parsing: GO:0043547 ! No parse for: GO:0043547 positive regulation of GTPase activity ! parsing: GO:0043552 ! No parse for: GO:0043552 positive regulation of phosphoinositide 3-kinase activity ! parsing: GO:0043568 ! Already have xp for: GO:0043568 positive regulation of insulin-like growth factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates insulin-like growth factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0048009])] ! parsing: GO:0043628 ! No parse for: GO:0043628 ncRNA 3'-end processing ! parsing: GO:0043629 ! parse: GO:0043629 using "ncRNA polyadenylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=SO:0000610, OBO_REL:results_in_addition_to=SO:0000655]) [-3] ! no existing xp def ! def: "The enzymatic addition of a sequence of adenylyl residues (typically 15-70 in S. cerevisiae) at the 3' end of substrates that may include the following nuclear non-coding RNAs (ncRNA) from eukaryotes: nuclear ncRNA precursors (includes pre-RNA, snoRNA and snRNA that may be incorrectly processed and/or assembled with proteins), aberrant nuclear ncRNAs (such as hypomethylated tRNA and short 5S rRNA), misfolded nuclear ncRNAs and variant forms of ncRNAs. Serves as a prerequisite step for subsequent exosome-mediated degradation." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of polyA_sequence and OBO_REL:results_in_addition_to ncRNA [cdef(GO:0008152, [OBO_REL:results_in_addition_of=SO:0000610, OBO_REL:results_in_addition_to=SO:0000655])] [Term] id: GO:0043629 ! ncRNA polyadenylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of SO:0000610 ! polyA_sequence intersection_of: OBO_REL:results_in_addition_to SO:0000655 ! ncRNA synonym: "noncoding RNA polyadenylation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043629: 2.38 ! parsing: GO:0043630 ! No parse for: GO:0043630 ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process ! parsing: GO:0044253 ! Already have xp for: GO:0044253 positive regulation of multicellular organismal metabolic process ! CURRENT : positive regulation of biological process that regulates multicellular organismal metabolic process [cdef(GO:0048518, [regulates=GO:0044236])] ! parsing: GO:0044417 ! No parse for: GO:0044417 translocation of molecules into host ! parsing: GO:0044418 ! No parse for: GO:0044418 translocation of DNA into host ! parsing: GO:0045020 ! No parse for: GO:0045020 error-prone DNA repair ! parsing: GO:0045043 ! No parse for: GO:0045043 protein import into mitochondrial intermembrane space, nonconservative ! parsing: GO:0045048 ! parse: GO:0045048 using "localization of protein in ER membrane" => cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=CHEBI:36080]), [OBO_REL:unfolds_in=GO:0005789]) [-4] ! parse: GO:0045048 using "localization of protein in ER membrane" => cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]), [OBO_REL:unfolds_in=GO:0005789]) [-4] ! no existing xp def ! def: "The process by which a protein is incorporated into an endoplasmic reticulum (ER) membrane. It depends on specific topogenic sequences of amino acids that ensure that a protein acquires the proper orientation during its insertion into the ER membrane." ! PROPOSED: cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]) that OBO_REL:unfolds_in endoplasmic reticulum membrane [cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]), [OBO_REL:unfolds_in=GO:0005789])] [Term] id: GO:0045048 ! protein insertion into ER membrane intersection_of: _:cdef__GO_0051179_____OBO_REL_results_in_localization_of___SO_0000358___ intersection_of: OBO_REL:unfolds_in GO:0005789 ! endoplasmic reticulum membrane synonym: "clustering of protein in ER membrane" EXACT [OBOL:automatic] synonym: "establishment and maintenance of localization of protein in ER membrane" EXACT [OBOL:automatic] synonym: "establishment and maintenance of position of protein in ER membrane" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045048: 16.34 ! parsing: GO:0045059 ! No parse for: GO:0045059 positive thymic T cell selection ! parsing: GO:0045067 ! No parse for: GO:0045067 positive extrathymic T cell selection ! parsing: GO:0045070 ! Already have xp for: GO:0045070 positive regulation of viral genome replication ! CURRENT : positive regulation of biological process that regulates viral genome replication [cdef(GO:0048518, [regulates=GO:0019079])] ! parsing: GO:0045078 ! Already have xp for: GO:0045078 positive regulation of interferon-gamma biosynthetic process ! CURRENT : positive regulation of biological process that regulates interferon-gamma biosynthetic process [cdef(GO:0048518, [regulates=GO:0042095])] ! parsing: GO:0045080 ! Already have xp for: GO:0045080 positive regulation of chemokine biosynthetic process ! CURRENT : positive regulation of biological process that regulates chemokine biosynthetic process [cdef(GO:0048518, [regulates=GO:0042033])] ! parsing: GO:0045082 ! No parse for: GO:0045082 positive regulation of interleukin-10 biosynthetic process ! parsing: GO:0045084 ! No parse for: GO:0045084 positive regulation of interleukin-12 biosynthetic process ! parsing: GO:0045086 ! Already have xp for: GO:0045086 positive regulation of interleukin-2 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-2 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042094])] ! parsing: GO:0045089 ! Already have xp for: GO:0045089 positive regulation of innate immune response ! CURRENT : positive regulation of biological process that regulates innate immune response [cdef(GO:0048518, [regulates=GO:0045087])] ! parsing: GO:0045141 ! parse: GO:0045141 using "telomere clustering" => cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000624]) [-2] ! no existing xp def ! def: "The cell cycle process whereby the dynamic reorganization of telomeres occurs in early meiotic prophase, during which meiotic chromosome ends are gathered in a bouquet arrangement at the inner surface of the nuclear envelope proximal to the spindle pole body. This plays an important role in homologous chromosome pairing and therefore progression through meiosis." ! PROPOSED: localization that OBO_REL:results_in_localization_of telomere [cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000624])] [Term] id: GO:0045141 ! telomere clustering intersection_of: GO:0051179 ! localization intersection_of: OBO_REL:results_in_localization_of SO:0000624 ! telomere synonym: "clustering of telomeric DNA" EXACT [OBOL:automatic] synonym: "clustering of telomeric sequence" EXACT [OBOL:automatic] synonym: "establishment and maintenance of localization of telomeric DNA" EXACT [OBOL:automatic] synonym: "establishment and maintenance of localization of telomeric sequence" EXACT [OBOL:automatic] synonym: "establishment and maintenance of position of telomeric DNA" EXACT [OBOL:automatic] synonym: "establishment and maintenance of position of telomeric sequence" EXACT [OBOL:automatic] synonym: "localization of telomeric DNA" EXACT [OBOL:automatic] synonym: "localization of telomeric sequence" EXACT [OBOL:automatic] synonym: "telomeric DNA clustering" EXACT [OBOL:automatic] synonym: "telomeric DNA establishment and maintenance of localization" EXACT [OBOL:automatic] synonym: "telomeric DNA establishment and maintenance of position" EXACT [OBOL:automatic] synonym: "telomeric DNA localization" EXACT [OBOL:automatic] synonym: "telomeric sequence clustering" EXACT [OBOL:automatic] synonym: "telomeric sequence establishment and maintenance of localization" EXACT [OBOL:automatic] synonym: "telomeric sequence establishment and maintenance of position" EXACT [OBOL:automatic] synonym: "telomeric sequence localization" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045141: 1.58 ! parsing: GO:0045143 ! No parse for: GO:0045143 homologous chromosome segregation ! parsing: GO:0045146 ! parse: GO:0045146 using "initiation of acetate breakdown by acetate" => cdef(GO:0043077, [OBO_REL:mediated_by=CHEBI:30089]) [-2] ! parse: GO:0045146 using "initiation of acetate catabolic process by acetate" => cdef(GO:0043077, [OBO_REL:mediated_by=CHEBI:30089]) [-2] ! parse: GO:0045146 using "initiation of acetate degradation by acetate" => cdef(GO:0043077, [OBO_REL:mediated_by=CHEBI:30089]) [-2] ! no existing xp def ! def: "The activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate." ! PROPOSED: initiation of acetate catabolic process that OBO_REL:mediated_by acetate [cdef(GO:0043077, [OBO_REL:mediated_by=CHEBI:30089])] [Term] id: GO:0045146 ! initiation of acetate catabolic process by acetate intersection_of: GO:0043077 ! initiation of acetate catabolic process intersection_of: OBO_REL:mediated_by CHEBI:30089 ! acetate ! seconds spent parsing GO:0045146: 4.41 ! parsing: GO:0045220 ! Already have xp for: GO:0045220 positive regulation of FasL biosynthetic process ! CURRENT : positive regulation of biological process that regulates FasL biosynthetic process [cdef(GO:0048518, [regulates=GO:0045210])] ! parsing: GO:0045224 ! No parse for: GO:0045224 positive regulation of CD4 biosynthetic process ! parsing: GO:0045315 ! Already have xp for: GO:0045315 positive regulation of compound eye photoreceptor development ! CURRENT : positive regulation of biological process that regulates compound eye photoreceptor development [cdef(GO:0048518, [regulates=GO:0042051])] ! parsing: GO:0045325 ! No parse for: GO:0045325 peptidyl-tryptophan hydroxylation ! parsing: GO:0045345 ! Already have xp for: GO:0045345 positive regulation of MHC class I biosynthetic process ! CURRENT : positive regulation of biological process that regulates MHC class I biosynthetic process [cdef(GO:0048518, [regulates=GO:0045341])] ! parsing: GO:0045348 ! Already have xp for: GO:0045348 positive regulation of MHC class II biosynthetic process ! CURRENT : positive regulation of biological process that regulates MHC class II biosynthetic process [cdef(GO:0048518, [regulates=GO:0045342])] ! parsing: GO:0045356 ! Already have xp for: GO:0045356 positive regulation of interferon-alpha biosynthetic process ! CURRENT : positive regulation of biological process that regulates interferon-alpha biosynthetic process [cdef(GO:0048518, [regulates=GO:0045349])] ! parsing: GO:0045359 ! Already have xp for: GO:0045359 positive regulation of interferon-beta biosynthetic process ! CURRENT : positive regulation of biological process that regulates interferon-beta biosynthetic process [cdef(GO:0048518, [regulates=GO:0045350])] ! parsing: GO:0045362 ! Already have xp for: GO:0045362 positive regulation of interleukin-1 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-1 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042222])] ! parsing: GO:0045365 ! No parse for: GO:0045365 positive regulation of interleukin-11 biosynthetic process ! parsing: GO:0045368 ! No parse for: GO:0045368 positive regulation of interleukin-13 biosynthetic process ! parsing: GO:0045371 ! No parse for: GO:0045371 positive regulation of interleukin-14 biosynthetic process ! parsing: GO:0045374 ! No parse for: GO:0045374 positive regulation of interleukin-15 biosynthetic process ! parsing: GO:0045377 ! No parse for: GO:0045377 positive regulation of interleukin-16 biosynthetic process ! parsing: GO:0045380 ! No parse for: GO:0045380 positive regulation of interleukin-17 biosynthetic process ! parsing: GO:0045383 ! No parse for: GO:0045383 positive regulation of interleukin-18 biosynthetic process ! parsing: GO:0045386 ! No parse for: GO:0045386 positive regulation of interleukin-19 biosynthetic process ! parsing: GO:0045389 ! No parse for: GO:0045389 positive regulation of interleukin-20 biosynthetic process ! parsing: GO:0045392 ! No parse for: GO:0045392 positive regulation of interleukin-21 biosynthetic process ! parsing: GO:0045395 ! No parse for: GO:0045395 positive regulation of interleukin-22 biosynthetic process ! parsing: GO:0045398 ! No parse for: GO:0045398 positive regulation of interleukin-23 biosynthetic process ! parsing: GO:0045401 ! Already have xp for: GO:0045401 positive regulation of interleukin-3 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-3 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042223])] ! parsing: GO:0045404 ! Already have xp for: GO:0045404 positive regulation of interleukin-4 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-4 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042097])] ! parsing: GO:0045407 ! Already have xp for: GO:0045407 positive regulation of interleukin-5 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-5 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042225])] ! parsing: GO:0045410 ! Already have xp for: GO:0045410 positive regulation of interleukin-6 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-6 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042226])] ! parsing: GO:0045413 ! Already have xp for: GO:0045413 positive regulation of interleukin-7 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-7 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042227])] ! parsing: GO:0045416 ! Already have xp for: GO:0045416 positive regulation of interleukin-8 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-8 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042228])] ! parsing: GO:0045419 ! Already have xp for: GO:0045419 positive regulation of interleukin-9 biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-9 biosynthetic process [cdef(GO:0048518, [regulates=GO:0042229])] ! parsing: GO:0045422 ! Already have xp for: GO:0045422 positive regulation of connective tissue growth factor biosynthetic process ! CURRENT : positive regulation of biological process that regulates connective tissue growth factor biosynthetic process [cdef(GO:0048518, [regulates=GO:0045189])] ! parsing: GO:0045425 ! Already have xp for: GO:0045425 positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process ! CURRENT : positive regulation of biological process that regulates granulocyte macrophage colony-stimulating factor biosynthetic process [cdef(GO:0048518, [regulates=GO:0042253])] ! parsing: GO:0045429 ! Already have xp for: GO:0045429 positive regulation of nitric oxide biosynthetic process ! CURRENT : positive regulation of biological process that regulates nitric oxide biosynthetic process [cdef(GO:0048518, [regulates=GO:0006809])] ! parsing: GO:0045536 ! No parse for: GO:0045536 positive regulation of interleukin-24 biosynthetic process ! parsing: GO:0045537 ! No parse for: GO:0045537 positive regulation of interleukin-25 biosynthetic process ! parsing: GO:0045538 ! No parse for: GO:0045538 positive regulation of interleukin-26 biosynthetic process ! parsing: GO:0045539 ! No parse for: GO:0045539 positive regulation of interleukin-27 biosynthetic process ! parsing: GO:0045542 ! Already have xp for: GO:0045542 positive regulation of cholesterol biosynthetic process ! CURRENT : positive regulation of biological process that regulates cholesterol biosynthetic process [cdef(GO:0048518, [regulates=GO:0006695])] ! parsing: GO:0045556 ! Already have xp for: GO:0045556 positive regulation of TRAIL biosynthetic process ! CURRENT : positive regulation of biological process that regulates TRAIL biosynthetic process [cdef(GO:0048518, [regulates=GO:0045553])] ! parsing: GO:0045564 ! Already have xp for: GO:0045564 positive regulation of TRAIL receptor biosynthetic process ! CURRENT : positive regulation of biological process that regulates TRAIL receptor biosynthetic process [cdef(GO:0048518, [regulates=GO:0045557])] ! parsing: GO:0045566 ! Already have xp for: GO:0045566 positive regulation of TRAIL receptor 1 biosynthetic process ! CURRENT : positive regulation of biological process that regulates TRAIL receptor 1 biosynthetic process [cdef(GO:0048518, [regulates=GO:0045558])] ! parsing: GO:0045568 ! Already have xp for: GO:0045568 positive regulation of TRAIL receptor 2 biosynthetic process ! CURRENT : positive regulation of biological process that regulates TRAIL receptor 2 biosynthetic process [cdef(GO:0048518, [regulates=GO:0045559])] ! parsing: GO:0045572 ! Already have xp for: GO:0045572 positive regulation of imaginal disc growth ! CURRENT : positive regulation of biological process that regulates imaginal disc growth [cdef(GO:0048518, [regulates=GO:0007446])] ! parsing: GO:0045579 ! Already have xp for: GO:0045579 positive regulation of B cell differentiation ! CURRENT : positive regulation of biological process that regulates B cell differentiation [cdef(GO:0048518, [regulates=GO:0030183])] ! parsing: GO:0045582 ! Already have xp for: GO:0045582 positive regulation of T cell differentiation ! CURRENT : positive regulation of biological process that regulates T cell differentiation [cdef(GO:0048518, [regulates=GO:0030217])] ! parsing: GO:0045585 ! Already have xp for: GO:0045585 positive regulation of cytotoxic T cell differentiation ! CURRENT : positive regulation of biological process that regulates cytotoxic T cell differentiation [cdef(GO:0048518, [regulates=GO:0045065])] ! parsing: GO:0045588 ! Already have xp for: GO:0045588 positive regulation of gamma-delta T cell differentiation ! CURRENT : positive regulation of biological process that regulates gamma-delta T cell differentiation [cdef(GO:0048518, [regulates=GO:0042492])] ! parsing: GO:0045591 ! Already have xp for: GO:0045591 positive regulation of regulatory T cell differentiation ! CURRENT : positive regulation of biological process that regulates regulatory T cell differentiation [cdef(GO:0048518, [regulates=GO:0045066])] ! parsing: GO:0045594 ! Already have xp for: GO:0045594 positive regulation of cumulus cell differentiation ! CURRENT : positive regulation of biological process that regulates cumulus cell differentiation [cdef(GO:0048518, [regulates=GO:0001549])] ! parsing: GO:0045597 ! Already have xp for: GO:0045597 positive regulation of cell differentiation ! CURRENT : positive regulation of biological process that regulates cell differentiation [cdef(GO:0048518, [regulates=GO:0030154])] ! parsing: GO:0045600 ! Already have xp for: GO:0045600 positive regulation of fat cell differentiation ! CURRENT : positive regulation of biological process that regulates fat cell differentiation [cdef(GO:0048518, [regulates=GO:0045444])] ! parsing: GO:0045603 ! Already have xp for: GO:0045603 positive regulation of endothelial cell differentiation ! CURRENT : positive regulation of biological process that regulates endothelial cell differentiation [cdef(GO:0048518, [regulates=GO:0045446])] ! parsing: GO:0045606 ! Already have xp for: GO:0045606 positive regulation of epidermal cell differentiation ! CURRENT : positive regulation of biological process that regulates epidermal cell differentiation [cdef(GO:0048518, [regulates=GO:0009913])] ! parsing: GO:0045609 ! Already have xp for: GO:0045609 positive regulation of auditory receptor cell differentiation ! CURRENT : positive regulation of biological process that regulates auditory receptor cell differentiation [cdef(GO:0048518, [regulates=GO:0042491])] ! parsing: GO:0045612 ! Already have xp for: GO:0045612 positive regulation of hemocyte differentiation ! CURRENT : positive regulation of biological process that regulates hemocyte differentiation [cdef(GO:0048518, [regulates=GO:0042386])] ! parsing: GO:0045615 ! Already have xp for: GO:0045615 positive regulation of plasmatocyte differentiation ! CURRENT : positive regulation of biological process that regulates plasmatocyte differentiation [cdef(GO:0048518, [regulates=GO:0042387])] ! parsing: GO:0045618 ! Already have xp for: GO:0045618 positive regulation of keratinocyte differentiation ! CURRENT : positive regulation of biological process that regulates keratinocyte differentiation [cdef(GO:0048518, [regulates=GO:0030216])] ! parsing: GO:0045621 ! Already have xp for: GO:0045621 positive regulation of lymphocyte differentiation ! CURRENT : positive regulation of biological process that regulates lymphocyte differentiation [cdef(GO:0048518, [regulates=GO:0030098])] ! parsing: GO:0045624 ! Already have xp for: GO:0045624 positive regulation of T-helper cell differentiation ! CURRENT : positive regulation of biological process that regulates T-helper cell differentiation [cdef(GO:0048518, [regulates=GO:0042093])] ! parsing: GO:0045627 ! Already have xp for: GO:0045627 positive regulation of T-helper 1 cell differentiation ! CURRENT : positive regulation of biological process that regulates T-helper 1 cell differentiation [cdef(GO:0048518, [regulates=GO:0045063])] ! parsing: GO:0045630 ! Already have xp for: GO:0045630 positive regulation of T-helper 2 cell differentiation ! CURRENT : positive regulation of biological process that regulates T-helper 2 cell differentiation [cdef(GO:0048518, [regulates=GO:0045064])] ! parsing: GO:0045633 ! Already have xp for: GO:0045633 positive regulation of mechanoreceptor differentiation ! CURRENT : positive regulation of biological process that regulates mechanoreceptor differentiation [cdef(GO:0048518, [regulates=GO:0042490])] ! parsing: GO:0045636 ! Already have xp for: GO:0045636 positive regulation of melanocyte differentiation ! CURRENT : positive regulation of biological process that regulates melanocyte differentiation [cdef(GO:0048518, [regulates=GO:0030318])] ! parsing: GO:0045639 ! Already have xp for: GO:0045639 positive regulation of myeloid cell differentiation ! CURRENT : positive regulation of biological process that regulates myeloid cell differentiation [cdef(GO:0048518, [regulates=GO:0030099])] ! parsing: GO:0045642 ! Already have xp for: GO:0045642 positive regulation of basophil differentiation ! CURRENT : positive regulation of biological process that regulates basophil differentiation [cdef(GO:0048518, [regulates=GO:0030221])] ! parsing: GO:0045645 ! Already have xp for: GO:0045645 positive regulation of eosinophil differentiation ! CURRENT : positive regulation of biological process that regulates eosinophil differentiation [cdef(GO:0048518, [regulates=GO:0030222])] ! parsing: GO:0045648 ! Already have xp for: GO:0045648 positive regulation of erythrocyte differentiation ! CURRENT : positive regulation of biological process that regulates erythrocyte differentiation [cdef(GO:0048518, [regulates=GO:0030218])] ! parsing: GO:0045651 ! Already have xp for: GO:0045651 positive regulation of macrophage differentiation ! CURRENT : positive regulation of biological process that regulates macrophage differentiation [cdef(GO:0048518, [regulates=GO:0030225])] ! parsing: GO:0045654 ! Already have xp for: GO:0045654 positive regulation of megakaryocyte differentiation ! CURRENT : positive regulation of biological process that regulates megakaryocyte differentiation [cdef(GO:0048518, [regulates=GO:0030219])] ! parsing: GO:0045657 ! Already have xp for: GO:0045657 positive regulation of monocyte differentiation ! CURRENT : positive regulation of biological process that regulates monocyte differentiation [cdef(GO:0048518, [regulates=GO:0030224])] ! parsing: GO:0045660 ! Already have xp for: GO:0045660 positive regulation of neutrophil differentiation ! CURRENT : positive regulation of biological process that regulates neutrophil differentiation [cdef(GO:0048518, [regulates=GO:0030223])] ! parsing: GO:0045663 ! Already have xp for: GO:0045663 positive regulation of myoblast differentiation ! CURRENT : positive regulation of biological process that regulates myoblast differentiation [cdef(GO:0048518, [regulates=GO:0045445])] ! parsing: GO:0045666 ! Already have xp for: GO:0045666 positive regulation of neuron differentiation ! CURRENT : positive regulation of biological process that regulates neuron differentiation [cdef(GO:0048518, [regulates=GO:0030182])] ! parsing: GO:0045669 ! Already have xp for: GO:0045669 positive regulation of osteoblast differentiation ! CURRENT : positive regulation of biological process that regulates osteoblast differentiation [cdef(GO:0048518, [regulates=GO:0001649])] ! parsing: GO:0045672 ! Already have xp for: GO:0045672 positive regulation of osteoclast differentiation ! CURRENT : positive regulation of biological process that regulates osteoclast differentiation [cdef(GO:0048518, [regulates=GO:0030316])] ! parsing: GO:0045678 ! No parse for: GO:0045678 positive regulation of R7 cell differentiation ! parsing: GO:0045681 ! No parse for: GO:0045681 positive regulation of R8 cell differentiation ! parsing: GO:0045684 ! Already have xp for: GO:0045684 positive regulation of epidermis development ! CURRENT : positive regulation of biological process that regulates epidermis development [cdef(GO:0048518, [regulates=GO:0008544])] ! parsing: GO:0045687 ! Already have xp for: GO:0045687 positive regulation of glial cell differentiation ! CURRENT : positive regulation of biological process that regulates glial cell differentiation [cdef(GO:0048518, [regulates=GO:0010001])] ! parsing: GO:0045690 ! Already have xp for: GO:0045690 positive regulation of antipodal cell differentiation ! CURRENT : positive regulation of biological process that regulates antipodal cell differentiation [cdef(GO:0048518, [regulates=GO:0009557])] ! parsing: GO:0045693 ! Already have xp for: GO:0045693 positive regulation of embryo sac central cell differentiation ! CURRENT : positive regulation of biological process that regulates embryo sac central cell differentiation [cdef(GO:0048518, [regulates=GO:0009559])] ! parsing: GO:0045696 ! Already have xp for: GO:0045696 positive regulation of embryo sac egg cell differentiation ! CURRENT : positive regulation of biological process that regulates embryo sac egg cell differentiation [cdef(GO:0048518, [regulates=GO:0009560])] ! parsing: GO:0045699 ! Already have xp for: GO:0045699 positive regulation of synergid differentiation ! CURRENT : positive regulation of biological process that regulates synergid differentiation [cdef(GO:0048518, [regulates=GO:0009563])] ! parsing: GO:0045702 ! Already have xp for: GO:0045702 positive regulation of spermatid nuclear differentiation ! CURRENT : positive regulation of biological process that regulates spermatid nuclear differentiation [cdef(GO:0048518, [regulates=GO:0007289])] ! parsing: GO:0045706 ! No parse for: GO:0045706 positive regulation of salivary gland boundary specification ! parsing: GO:0045711 ! Already have xp for: GO:0045711 positive regulation of adult salivary gland boundary specification ! CURRENT : positive regulation of biological process that regulates adult salivary gland boundary specification [cdef(GO:0048518, [regulates=GO:0007434])] ! parsing: GO:0045712 ! Already have xp for: GO:0045712 positive regulation of larval salivary gland boundary specification ! CURRENT : positive regulation of biological process that regulates larval salivary gland boundary specification [cdef(GO:0048518, [regulates=GO:0007433])] ! parsing: GO:0045716 ! Already have xp for: GO:0045716 positive regulation of low-density lipoprotein receptor biosynthetic process ! CURRENT : positive regulation of biological process that regulates low-density lipoprotein receptor biosynthetic process [cdef(GO:0048518, [regulates=GO:0045713])] ! parsing: GO:0045722 ! Already have xp for: GO:0045722 positive regulation of gluconeogenesis ! CURRENT : positive regulation of biological process that regulates gluconeogenesis [cdef(GO:0048518, [regulates=GO:0006094])] ! parsing: GO:0045723 ! Already have xp for: GO:0045723 positive regulation of fatty acid biosynthetic process ! CURRENT : positive regulation of biological process that regulates fatty acid biosynthetic process [cdef(GO:0048518, [regulates=GO:0006633])] ! parsing: GO:0045724 ! Already have xp for: GO:0045724 positive regulation of flagellum biogenesis ! CURRENT : positive regulation of biological process that regulates flagellum biogenesis [cdef(GO:0048518, [regulates=GO:0009296])] ! parsing: GO:0045725 ! Already have xp for: GO:0045725 positive regulation of glycogen biosynthetic process ! CURRENT : positive regulation of biological process that regulates glycogen biosynthetic process [cdef(GO:0048518, [regulates=GO:0005978])] ! parsing: GO:0045726 ! Already have xp for: GO:0045726 positive regulation of integrin biosynthetic process ! CURRENT : positive regulation of biological process that regulates integrin biosynthetic process [cdef(GO:0048518, [regulates=GO:0045112])] ! parsing: GO:0045727 ! No parse for: GO:0045727 positive regulation of translation ! parsing: GO:0045732 ! Already have xp for: GO:0045732 positive regulation of protein catabolic process ! CURRENT : positive regulation of biological process that regulates protein catabolic process [cdef(GO:0048518, [regulates=GO:0030163])] ! parsing: GO:0045737 ! No parse for: GO:0045737 positive regulation of cyclin-dependent protein kinase activity ! parsing: GO:0045739 ! Already have xp for: GO:0045739 positive regulation of DNA repair ! CURRENT : positive regulation of biological process that regulates DNA repair [cdef(GO:0048518, [regulates=GO:0006281])] ! parsing: GO:0045740 ! Already have xp for: GO:0045740 positive regulation of DNA replication ! CURRENT : positive regulation of biological process that regulates DNA replication [cdef(GO:0048518, [regulates=GO:0006260])] ! parsing: GO:0045741 ! No parse for: GO:0045741 positive regulation of epidermal growth factor receptor activity ! parsing: GO:0045742 ! Already have xp for: GO:0045742 positive regulation of epidermal growth factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates epidermal growth factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0007173])] ! parsing: GO:0045743 ! Already have xp for: GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates fibroblast growth factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0008543])] ! parsing: GO:0045745 ! Already have xp for: GO:0045745 positive regulation of G-protein coupled receptor protein signaling pathway ! CURRENT : positive regulation of biological process that regulates G-protein coupled receptor protein signaling pathway [cdef(GO:0048518, [regulates=GO:0007186])] ! parsing: GO:0045747 ! Already have xp for: GO:0045747 positive regulation of Notch signaling pathway ! CURRENT : positive regulation of biological process that regulates Notch signaling pathway [cdef(GO:0048518, [regulates=GO:0007219])] ! parsing: GO:0045748 ! No parse for: GO:0045748 positive regulation of R8 cell spacing in compound eye ! parsing: GO:0045750 ! Already have xp for: GO:0045750 positive regulation of S phase of mitotic cell cycle ! CURRENT : positive regulation of biological process that regulates S phase of mitotic cell cycle [cdef(GO:0048518, [regulates=GO:0000084])] ! parsing: GO:0045752 ! Already have xp for: GO:0045752 positive regulation of Toll signaling pathway ! CURRENT : positive regulation of biological process that regulates Toll signaling pathway [cdef(GO:0048518, [regulates=GO:0008063])] ! parsing: GO:0045754 ! Already have xp for: GO:0045754 positive regulation of acetate catabolic process ! CURRENT : positive regulation of biological process that regulates acetate catabolic process [cdef(GO:0048518, [regulates=GO:0045733])] ! parsing: GO:0045756 ! Already have xp for: GO:0045756 positive regulation of initiation of acetate catabolic process by acetate ! CURRENT : positive regulation of biological process that regulates initiation of acetate catabolic process by acetate [cdef(GO:0048518, [regulates=GO:0045146])] ! parsing: GO:0045760 ! No parse for: GO:0045760 positive regulation of action potential ! parsing: GO:0045762 ! No parse for: GO:0045762 positive regulation of adenylate cyclase activity ! parsing: GO:0045764 ! Already have xp for: GO:0045764 positive regulation of amino acid metabolic process ! CURRENT : positive regulation of biological process that regulates amino acid metabolic process [cdef(GO:0048518, [regulates=GO:0006520])] ! parsing: GO:0045766 ! Already have xp for: GO:0045766 positive regulation of angiogenesis ! CURRENT : positive regulation of biological process that regulates angiogenesis [cdef(GO:0048518, [regulates=GO:0001525])] ! parsing: GO:0045768 ! Already have xp for: GO:0045768 positive regulation of anti-apoptosis ! CURRENT : positive regulation of biological process that regulates anti-apoptosis [cdef(GO:0048518, [regulates=GO:0006916])] ! parsing: GO:0045770 ! Already have xp for: GO:0045770 positive regulation of asymmetric cell division ! CURRENT : positive regulation of biological process that regulates asymmetric cell division [cdef(GO:0048518, [regulates=GO:0008356])] ! parsing: GO:0045772 ! No parse for: GO:0045772 positive regulation of autophagic vacuole size ! parsing: GO:0045773 ! Already have xp for: GO:0045773 positive regulation of axon extension ! CURRENT : positive regulation of biological process that regulates axon extension [cdef(GO:0048518, [regulates=GO:0048675])] ! parsing: GO:0045775 ! Already have xp for: GO:0045775 positive regulation of beta 2 integrin biosynthetic process ! CURRENT : positive regulation of biological process that regulates beta 2 integrin biosynthetic process [cdef(GO:0048518, [regulates=GO:0045114])] ! parsing: GO:0045777 ! No parse for: GO:0045777 positive regulation of blood pressure ! parsing: GO:0045778 ! Already have xp for: GO:0045778 positive regulation of ossification ! CURRENT : positive regulation of biological process that regulates ossification [cdef(GO:0048518, [regulates=GO:0001503])] ! parsing: GO:0045780 ! Already have xp for: GO:0045780 positive regulation of bone resorption ! CURRENT : positive regulation of biological process that regulates bone resorption [cdef(GO:0048518, [regulates=GO:0045453])] ! parsing: GO:0045782 ! Already have xp for: GO:0045782 positive regulation of cell budding ! CURRENT : positive regulation of biological process that regulates cell budding [cdef(GO:0048518, [regulates=GO:0007114])] ! parsing: GO:0045785 ! Already have xp for: GO:0045785 positive regulation of cell adhesion ! CURRENT : positive regulation of biological process that regulates cell adhesion [cdef(GO:0048518, [regulates=GO:0007155])] ! parsing: GO:0045787 ! No parse for: GO:0045787 positive regulation of cell cycle ! parsing: GO:0045793 ! No parse for: GO:0045793 positive regulation of cell size ! parsing: GO:0045795 ! No parse for: GO:0045795 positive regulation of cell volume ! parsing: GO:0045797 ! Already have xp for: GO:0045797 positive regulation of cholesterol absorption ! CURRENT : positive regulation of biological process that regulates cholesterol absorption [cdef(GO:0048518, [regulates=GO:0030299])] ! parsing: GO:0045799 ! Already have xp for: GO:0045799 positive regulation of chromatin assembly or disassembly ! CURRENT : positive regulation of biological process that regulates chromatin assembly or disassembly [cdef(GO:0048518, [regulates=GO:0006333])] ! parsing: GO:0045801 ! Already have xp for: GO:0045801 positive regulation of chitin-based cuticle tanning ! CURRENT : positive regulation of biological process that regulates chitin-based cuticle tanning [cdef(GO:0048518, [regulates=GO:0007593])] ! parsing: GO:0045805 ! Already have xp for: GO:0045805 positive regulation of eclosion ! CURRENT : positive regulation of biological process that regulates eclosion [cdef(GO:0048518, [regulates=GO:0007562])] ! parsing: GO:0045807 ! Already have xp for: GO:0045807 positive regulation of endocytosis ! CURRENT : positive regulation of biological process that regulates endocytosis [cdef(GO:0048518, [regulates=GO:0006897])] ! parsing: GO:0045809 ! Already have xp for: GO:0045809 positive regulation of establishment of competence for transformation ! CURRENT : positive regulation of biological process that regulates establishment of competence for transformation [cdef(GO:0048518, [regulates=GO:0030420])] ! parsing: GO:0045813 ! No parse for: GO:0045813 positive regulation of Wnt receptor signaling pathway, calcium modulating pathway ! parsing: GO:0045815 ! No parse for: GO:0045815 positive regulation of gene expression, epigenetic ! parsing: GO:0045817 ! No parse for: GO:0045817 positive regulation of transcription from RNA polymerase II promoter, global ! parsing: GO:0045819 ! Already have xp for: GO:0045819 positive regulation of glycogen catabolic process ! CURRENT : positive regulation of biological process that regulates glycogen catabolic process [cdef(GO:0048518, [regulates=GO:0005980])] ! parsing: GO:0045821 ! Already have xp for: GO:0045821 positive regulation of glycolysis ! CURRENT : positive regulation of biological process that regulates glycolysis [cdef(GO:0048518, [regulates=GO:0006096])] ! parsing: GO:0045823 ! Already have xp for: GO:0045823 positive regulation of heart contraction ! CURRENT : positive regulation of biological process that regulates heart contraction [cdef(GO:0048518, [regulates=GO:0060047])] ! parsing: GO:0045828 ! Already have xp for: GO:0045828 positive regulation of isoprenoid metabolic process ! CURRENT : positive regulation of biological process that regulates isoprenoid metabolic process [cdef(GO:0048518, [regulates=GO:0006720])] ! parsing: GO:0045830 ! Already have xp for: GO:0045830 positive regulation of isotype switching ! CURRENT : positive regulation of biological process that regulates isotype switching [cdef(GO:0048518, [regulates=GO:0045190])] ! parsing: GO:0045832 ! No parse for: GO:0045832 positive regulation of light-activated channel activity ! parsing: GO:0045834 ! Already have xp for: GO:0045834 positive regulation of lipid metabolic process ! CURRENT : positive regulation of biological process that regulates lipid metabolic process [cdef(GO:0048518, [regulates=GO:0006629])] ! parsing: GO:0045836 ! Already have xp for: GO:0045836 positive regulation of meiosis ! CURRENT : positive regulation of biological process that regulates meiosis [cdef(GO:0048518, [regulates=GO:0007126])] ! parsing: GO:0045838 ! No parse for: GO:0045838 positive regulation of membrane potential ! parsing: GO:0045840 ! Already have xp for: GO:0045840 positive regulation of mitosis ! CURRENT : positive regulation of biological process that regulates mitosis [cdef(GO:0048518, [regulates=GO:0007067])] ! parsing: GO:0045842 ! Already have xp for: GO:0045842 positive regulation of mitotic metaphase/anaphase transition ! CURRENT : positive regulation of biological process that regulates mitotic metaphase/anaphase transition [cdef(GO:0048518, [regulates=GO:0007091])] ! parsing: GO:0045844 ! Already have xp for: GO:0045844 positive regulation of striated muscle development ! CURRENT : positive regulation of biological process that regulates skeletal muscle development [cdef(GO:0048518, [regulates=GO:0007519])] ! parsing: GO:0045848 ! Already have xp for: GO:0045848 positive regulation of nitrogen utilization ! CURRENT : positive regulation of biological process that regulates nitrogen utilization [cdef(GO:0048518, [regulates=GO:0019740])] ! parsing: GO:0045850 ! Already have xp for: GO:0045850 positive regulation of nurse cell apoptosis ! CURRENT : positive regulation of biological process that regulates nurse cell apoptosis [cdef(GO:0048518, [regulates=GO:0045476])] ! parsing: GO:0045854 ! Already have xp for: GO:0045854 positive regulation of bicoid mRNA localization ! CURRENT : positive regulation of biological process that regulates bicoid mRNA localization [cdef(GO:0048518, [regulates=GO:0045450])] ! parsing: GO:0045856 ! Already have xp for: GO:0045856 positive regulation of pole plasm oskar mRNA localization ! CURRENT : positive regulation of biological process that regulates pole plasm oskar mRNA localization [cdef(GO:0048518, [regulates=GO:0045451])] ! parsing: GO:0045858 ! No parse for: GO:0045858 positive regulation of molecular function, epigenetic ! parsing: GO:0045860 ! No parse for: GO:0045860 positive regulation of protein kinase activity ! parsing: GO:0045862 ! Already have xp for: GO:0045862 positive regulation of proteolysis ! CURRENT : positive regulation of biological process that regulates proteolysis [cdef(GO:0048518, [regulates=GO:0006508])] ! parsing: GO:0045864 ! Already have xp for: GO:0045864 positive regulation of pteridine metabolic process ! CURRENT : positive regulation of biological process that regulates pteridine metabolic process [cdef(GO:0048518, [regulates=GO:0019889])] ! parsing: GO:0045870 ! Already have xp for: GO:0045870 positive regulation of retroviral genome replication ! CURRENT : positive regulation of biological process that regulates retroviral genome replication [cdef(GO:0048518, [regulates=GO:0045090])] ! parsing: GO:0045872 ! No parse for: GO:0045872 positive regulation of rhodopsin gene expression ! parsing: GO:0045874 ! Already have xp for: GO:0045874 positive regulation of sevenless signaling pathway ! CURRENT : positive regulation of biological process that regulates sevenless signaling pathway [cdef(GO:0048518, [regulates=GO:0045500])] ! parsing: GO:0045876 ! Already have xp for: GO:0045876 positive regulation of sister chromatid cohesion ! CURRENT : positive regulation of biological process that regulates sister chromatid cohesion [cdef(GO:0048518, [regulates=GO:0007062])] ! parsing: GO:0045880 ! Already have xp for: GO:0045880 positive regulation of smoothened signaling pathway ! CURRENT : positive regulation of biological process that regulates smoothened signaling pathway [cdef(GO:0048518, [regulates=GO:0007224])] ! parsing: GO:0045881 ! Already have xp for: GO:0045881 positive regulation of sporulation ! CURRENT : positive regulation of biological process that regulates sporulation [cdef(GO:0048518, [regulates=GO:0030435])] ! parsing: GO:0045883 ! Already have xp for: GO:0045883 positive regulation of sulfur utilization ! CURRENT : positive regulation of biological process that regulates sulfur utilization [cdef(GO:0048518, [regulates=GO:0006791])] ! parsing: GO:0045885 ! No parse for: GO:0045885 positive regulation of survival gene product expression ! parsing: GO:0045887 ! Already have xp for: GO:0045887 positive regulation of synaptic growth at neuromuscular junction ! CURRENT : positive regulation of biological process that regulates synaptic growth at neuromuscular junction [cdef(GO:0048518, [regulates=GO:0051124])] ! parsing: GO:0045893 ! No parse for: GO:0045893 positive regulation of transcription, DNA-dependent ! parsing: GO:0045895 ! No parse for: GO:0045895 positive regulation of transcription, mating-type specific ! parsing: GO:0045897 ! No parse for: GO:0045897 positive regulation of transcription, mitotic ! parsing: GO:0045899 ! Already have xp for: GO:0045899 positive regulation of transcriptional preinitiation complex assembly ! CURRENT : positive regulation of biological process that regulates transcriptional preinitiation complex assembly [cdef(GO:0048518, [regulates=GO:0051123])] ! parsing: GO:0045901 ! Already have xp for: GO:0045901 positive regulation of translational elongation ! CURRENT : positive regulation of biological process that regulates translational elongation [cdef(GO:0048518, [regulates=GO:0006414])] ! parsing: GO:0045903 ! No parse for: GO:0045903 positive regulation of translational fidelity ! parsing: GO:0045905 ! Already have xp for: GO:0045905 positive regulation of translational termination ! CURRENT : positive regulation of biological process that regulates translational termination [cdef(GO:0048518, [regulates=GO:0006415])] ! parsing: GO:0045907 ! Already have xp for: GO:0045907 positive regulation of vasoconstriction ! CURRENT : positive regulation of biological process that regulates vasoconstriction [cdef(GO:0048518, [regulates=GO:0042310])] ! parsing: GO:0045909 ! Already have xp for: GO:0045909 positive regulation of vasodilation ! CURRENT : positive regulation of biological process that regulates vasodilation [cdef(GO:0048518, [regulates=GO:0042311])] ! parsing: GO:0045911 ! Already have xp for: GO:0045911 positive regulation of DNA recombination ! CURRENT : positive regulation of biological process that regulates DNA recombination [cdef(GO:0048518, [regulates=GO:0006310])] ! parsing: GO:0045913 ! Already have xp for: GO:0045913 positive regulation of carbohydrate metabolic process ! CURRENT : positive regulation of biological process that regulates carbohydrate metabolic process [cdef(GO:0048518, [regulates=GO:0005975])] ! parsing: GO:0045915 ! Already have xp for: GO:0045915 positive regulation of catecholamine metabolic process ! CURRENT : positive regulation of biological process that regulates catecholamine metabolic process [cdef(GO:0048518, [regulates=GO:0006584])] ! parsing: GO:0045917 ! Already have xp for: GO:0045917 positive regulation of complement activation ! CURRENT : positive regulation of biological process that regulates complement activation [cdef(GO:0048518, [regulates=GO:0006956])] ! parsing: GO:0045919 ! Already have xp for: GO:0045919 positive regulation of cytolysis ! CURRENT : positive regulation of biological process that regulates cytolysis [cdef(GO:0048518, [regulates=GO:0019835])] ! parsing: GO:0045921 ! Already have xp for: GO:0045921 positive regulation of exocytosis ! CURRENT : positive regulation of biological process that regulates exocytosis [cdef(GO:0048518, [regulates=GO:0006887])] ! parsing: GO:0045923 ! Already have xp for: GO:0045923 positive regulation of fatty acid metabolic process ! CURRENT : positive regulation of biological process that regulates fatty acid metabolic process [cdef(GO:0048518, [regulates=GO:0006631])] ! parsing: GO:0045925 ! No parse for: GO:0045925 positive regulation of female receptivity ! parsing: GO:0045927 ! Already have xp for: GO:0045927 positive regulation of growth ! CURRENT : positive regulation of biological process that regulates growth [cdef(GO:0048518, [regulates=GO:0040007])] ! parsing: GO:0045929 ! Already have xp for: GO:0045929 positive regulation of juvenile hormone metabolic process ! CURRENT : positive regulation of biological process that regulates juvenile hormone metabolic process [cdef(GO:0048518, [regulates=GO:0006716])] ! parsing: GO:0045931 ! No parse for: GO:0045931 positive regulation of mitotic cell cycle ! parsing: GO:0045933 ! Already have xp for: GO:0045933 positive regulation of muscle contraction ! CURRENT : positive regulation of biological process that regulates muscle contraction [cdef(GO:0048518, [regulates=GO:0006936])] ! parsing: GO:0045935 ! No parse for: GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process ! parsing: GO:0045937 ! Already have xp for: GO:0045937 positive regulation of phosphate metabolic process ! CURRENT : positive regulation of biological process that regulates phosphate metabolic process [cdef(GO:0048518, [regulates=GO:0006796])] ! parsing: GO:0045938 ! No parse for: GO:0045938 positive regulation of circadian sleep/wake cycle, sleep ! parsing: GO:0045940 ! Already have xp for: GO:0045940 positive regulation of steroid metabolic process ! CURRENT : positive regulation of biological process that regulates steroid metabolic process [cdef(GO:0048518, [regulates=GO:0008202])] ! parsing: GO:0045941 ! Already have xp for: GO:0045941 positive regulation of transcription ! CURRENT : positive regulation of biological process that regulates transcription [cdef(GO:0048518, [regulates=GO:0006350])] ! parsing: GO:0045943 ! Already have xp for: GO:0045943 positive regulation of transcription from RNA polymerase I promoter ! CURRENT : positive regulation of biological process that regulates transcription from RNA polymerase I promoter [cdef(GO:0048518, [regulates=GO:0006360])] ! parsing: GO:0045944 ! Already have xp for: GO:0045944 positive regulation of transcription from RNA polymerase II promoter ! CURRENT : positive regulation of biological process that regulates transcription from RNA polymerase II promoter [cdef(GO:0048518, [regulates=GO:0006366])] ! parsing: GO:0045945 ! Already have xp for: GO:0045945 positive regulation of transcription from RNA polymerase III promoter ! CURRENT : positive regulation of biological process that regulates transcription from RNA polymerase III promoter [cdef(GO:0048518, [regulates=GO:0006383])] ! parsing: GO:0045948 ! Already have xp for: GO:0045948 positive regulation of translational initiation ! CURRENT : positive regulation of biological process that regulates translational initiation [cdef(GO:0048518, [regulates=GO:0006413])] ! parsing: GO:0045949 ! Already have xp for: GO:0045949 positive regulation of phosphorus utilization ! CURRENT : positive regulation of biological process that regulates phosphorus utilization [cdef(GO:0048518, [regulates=GO:0006794])] ! parsing: GO:0045951 ! Already have xp for: GO:0045951 positive regulation of mitotic recombination ! CURRENT : positive regulation of biological process that regulates mitotic recombination [cdef(GO:0048518, [regulates=GO:0006312])] ! parsing: GO:0045954 ! Already have xp for: GO:0045954 positive regulation of natural killer cell mediated cytotoxicity ! CURRENT : positive regulation of biological process that regulates natural killer cell mediated cytotoxicity [cdef(GO:0048518, [regulates=GO:0042267])] ! parsing: GO:0045956 ! Already have xp for: GO:0045956 positive regulation of calcium ion-dependent exocytosis ! CURRENT : positive regulation of biological process that regulates calcium ion-dependent exocytosis [cdef(GO:0048518, [regulates=GO:0017156])] ! parsing: GO:0045958 ! No parse for: GO:0045958 positive regulation of complement activation, alternative pathway ! parsing: GO:0045960 ! No parse for: GO:0045960 positive regulation of complement activation, classical pathway ! parsing: GO:0045962 ! No parse for: GO:0045962 positive regulation of development, heterochronic ! parsing: GO:0045964 ! Already have xp for: GO:0045964 positive regulation of dopamine metabolic process ! CURRENT : positive regulation of biological process that regulates dopamine metabolic process [cdef(GO:0048518, [regulates=GO:0042417])] ! parsing: GO:0045966 ! Already have xp for: GO:0045966 positive regulation of ecdysteroid metabolic process ! CURRENT : positive regulation of biological process that regulates ecdysteroid metabolic process [cdef(GO:0048518, [regulates=GO:0045455])] ! parsing: GO:0045969 ! Already have xp for: GO:0045969 positive regulation of juvenile hormone biosynthetic process ! CURRENT : positive regulation of biological process that regulates juvenile hormone biosynthetic process [cdef(GO:0048518, [regulates=GO:0006718])] ! parsing: GO:0045971 ! Already have xp for: GO:0045971 positive regulation of juvenile hormone catabolic process ! CURRENT : positive regulation of biological process that regulates juvenile hormone catabolic process [cdef(GO:0048518, [regulates=GO:0006719])] ! parsing: GO:0045973 ! Already have xp for: GO:0045973 positive regulation of juvenile hormone secretion ! CURRENT : positive regulation of biological process that regulates juvenile hormone secretion [cdef(GO:0048518, [regulates=GO:0045443])] ! parsing: GO:0045975 ! No parse for: GO:0045975 positive regulation of translation, ncRNA-mediated ! parsing: GO:0045977 ! No parse for: GO:0045977 positive regulation of mitotic cell cycle, embryonic ! parsing: GO:0045979 ! Already have xp for: GO:0045979 positive regulation of nucleoside metabolic process ! CURRENT : positive regulation of biological process that regulates nucleoside metabolic process [cdef(GO:0048518, [regulates=GO:0009116])] ! parsing: GO:0045981 ! Already have xp for: GO:0045981 positive regulation of nucleotide metabolic process ! CURRENT : positive regulation of biological process that regulates nucleotide metabolic process [cdef(GO:0048518, [regulates=GO:0009117])] ! parsing: GO:0045983 ! Already have xp for: GO:0045983 positive regulation of purine base metabolic process ! CURRENT : positive regulation of biological process that regulates purine base metabolic process [cdef(GO:0048518, [regulates=GO:0006144])] ! parsing: GO:0045985 ! Already have xp for: GO:0045985 positive regulation of pyrimidine base metabolic process ! CURRENT : positive regulation of biological process that regulates pyrimidine base metabolic process [cdef(GO:0048518, [regulates=GO:0006206])] ! parsing: GO:0045987 ! Already have xp for: GO:0045987 positive regulation of smooth muscle contraction ! CURRENT : positive regulation of biological process that regulates smooth muscle contraction [cdef(GO:0048518, [regulates=GO:0006939])] ! parsing: GO:0045989 ! Already have xp for: GO:0045989 positive regulation of striated muscle contraction ! CURRENT : positive regulation of biological process that regulates striated muscle contraction [cdef(GO:0048518, [regulates=GO:0006941])] ! parsing: GO:0045991 ! No parse for: GO:0045991 positive regulation of transcription by carbon catabolites ! parsing: GO:0045994 ! parse: GO:0045994 using "positive regulation of translational initiation by iron" => cdef(GO:0045948, [OBO_REL:mediated_by=CHEBI:18248]) [-2] ! parse: GO:0045994 using "up regulation of translational initiation by iron" => cdef(GO:0045948, [OBO_REL:mediated_by=CHEBI:18248]) [-2] ! parse: GO:0045994 using "up-regulation of translational initiation by iron" => cdef(GO:0045948, [OBO_REL:mediated_by=CHEBI:18248]) [-2] ! parse: GO:0045994 using "upregulation of translational initiation by iron" => cdef(GO:0045948, [OBO_REL:mediated_by=CHEBI:18248]) [-2] ! no existing xp def ! def: "Any process involving iron that activates or increases the rate of translational initiation." ! PROPOSED: positive regulation of translational initiation that OBO_REL:mediated_by iron [cdef(GO:0045948, [OBO_REL:mediated_by=CHEBI:18248])] [Term] id: GO:0045994 ! positive regulation of translational initiation by iron intersection_of: GO:0045948 ! positive regulation of translational initiation intersection_of: OBO_REL:mediated_by CHEBI:18248 ! iron synonym: "Iron mediated positive regulation of translational initiation" EXACT [OBOL:automatic] synonym: "Iron mediated up regulation of translational initiation" EXACT [OBOL:automatic] synonym: "Iron mediated up-regulation of translational initiation" EXACT [OBOL:automatic] synonym: "Iron mediated upregulation of translational initiation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045994: 7.7 ! parsing: GO:0045998 ! Already have xp for: GO:0045998 positive regulation of ecdysteroid biosynthetic process ! CURRENT : positive regulation of biological process that regulates ecdysteroid biosynthetic process [cdef(GO:0048518, [regulates=GO:0045456])] ! parsing: GO:0046000 ! Already have xp for: GO:0046000 positive regulation of ecdysteroid secretion ! CURRENT : positive regulation of biological process that regulates ecdysteroid secretion [cdef(GO:0048518, [regulates=GO:0045457])] ! parsing: GO:0046002 ! No parse for: GO:0046002 positive regulation of preblastoderm mitotic cell cycle ! parsing: GO:0046004 ! No parse for: GO:0046004 positive regulation of syncytial blastoderm mitotic cell cycle ! parsing: GO:0046005 ! No parse for: GO:0046005 positive regulation of circadian sleep/wake cycle, REM sleep ! parsing: GO:0046009 ! No parse for: GO:0046009 positive regulation of female receptivity, post-mating ! parsing: GO:0046010 ! No parse for: GO:0046010 positive regulation of circadian sleep/wake cycle, non-REM sleep ! parsing: GO:0046012 ! No parse for: GO:0046012 positive regulation of oskar mRNA translation ! parsing: GO:0046016 ! parse: GO:0046016 using "positive regulation of transcription by glucose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0046016 using "up regulation of transcription by glucose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0046016 using "up-regulation of transcription by glucose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! parse: GO:0046016 using "upregulation of transcription by glucose" => cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:17234]) [-2] ! no existing xp def ! def: "Any process involving glucose that activates or increases the rate of transcription." ! PROPOSED: positive regulation of transcription that OBO_REL:mediated_by glucose [cdef(GO:0045941, [OBO_REL:mediated_by=CHEBI:17234])] [Term] id: GO:0046016 ! positive regulation of transcription by glucose intersection_of: GO:0045941 ! positive regulation of transcription intersection_of: OBO_REL:mediated_by CHEBI:17234 ! glucose synonym: "Glucose mediated positive regulation of transcription" EXACT [OBOL:automatic] synonym: "Glucose mediated up regulation of transcription" EXACT [OBOL:automatic] synonym: "Glucose mediated up-regulation of transcription" EXACT [OBOL:automatic] synonym: "Glucose mediated upregulation of transcription" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated positive regulation of transcription" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated up regulation of transcription" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated up-regulation of transcription" EXACT [OBOL:automatic] synonym: "gluco-hexose mediated upregulation of transcription" EXACT [OBOL:automatic] ! seconds spent parsing GO:0046016: 7.14 ! parsing: GO:0046018 ! No parse for: GO:0046018 positive regulation of transcription from RNA polymerase I promoter, mitotic ! parsing: GO:0046022 ! No parse for: GO:0046022 positive regulation of transcription from RNA polymerase II promoter, mitotic ! parsing: GO:0046024 ! No parse for: GO:0046024 positive regulation of transcription from RNA polymerase III promoter, mitotic ! parsing: GO:0046102 ! parse: GO:0046102 using "inosine metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:17596]) [-2] ! parse: GO:0046102 using "inosine metabolic process" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001230]) [-2] ! parse: GO:0046102 using "inosine metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=CHEBI:17596]) [-2] ! parse: GO:0046102 using "inosine metabolism" => cdef(GO:0008152, [OBO_REL:has_participant=SO:0001230]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways involving inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs." ! PROPOSED: metabolic process that OBO_REL:has_participant inosine [cdef(GO:0008152, [OBO_REL:has_participant=SO:0001230])] [Term] id: GO:0046102 ! inosine metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:has_participant SO:0001230 ! inosine ! seconds spent parsing GO:0046102: 8.74 ! parsing: GO:0046103 ! parse: GO:0046103 using "inosine anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17596]) [-2] ! parse: GO:0046103 using "inosine anabolism" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230]) [-2] ! parse: GO:0046103 using "inosine biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17596]) [-2] ! parse: GO:0046103 using "inosine biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230]) [-2] ! parse: GO:0046103 using "inosine biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17596]) [-2] ! parse: GO:0046103 using "inosine biosynthetic process" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230]) [-2] ! parse: GO:0046103 using "inosine formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17596]) [-2] ! parse: GO:0046103 using "inosine formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230]) [-2] ! parse: GO:0046103 using "inosine synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=CHEBI:17596]) [-2] ! parse: GO:0046103 using "inosine synthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230]) [-2] ! no existing xp def ! def: "The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of inosine [cdef(GO:0009058, [OBO_REL:results_in_formation_of=SO:0001230])] [Term] id: GO:0046103 ! inosine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of SO:0001230 ! inosine ! seconds spent parsing GO:0046103: 20.91 ! parsing: GO:0046136 ! Already have xp for: GO:0046136 positive regulation of vitamin metabolic process ! CURRENT : positive regulation of biological process that regulates vitamin metabolic process [cdef(GO:0048518, [regulates=GO:0006766])] ! parsing: GO:0046319 ! Already have xp for: GO:0046319 positive regulation of glucosylceramide biosynthetic process ! CURRENT : positive regulation of biological process that regulates glucosylceramide biosynthetic process [cdef(GO:0048518, [regulates=GO:0006679])] ! parsing: GO:0046321 ! Already have xp for: GO:0046321 positive regulation of fatty acid oxidation ! CURRENT : positive regulation of biological process that regulates fatty acid oxidation [cdef(GO:0048518, [regulates=GO:0019395])] ! parsing: GO:0046326 ! Already have xp for: GO:0046326 positive regulation of glucose import ! CURRENT : positive regulation of biological process that regulates glucose import [cdef(GO:0048518, [regulates=GO:0046323])] ! parsing: GO:0046330 ! Already have xp for: GO:0046330 positive regulation of JNK cascade ! CURRENT : positive regulation of biological process that regulates JNK cascade [cdef(GO:0048518, [regulates=GO:0007254])] ! parsing: GO:0046427 ! Already have xp for: GO:0046427 positive regulation of JAK-STAT cascade ! CURRENT : positive regulation of biological process that regulates JAK-STAT cascade [cdef(GO:0048518, [regulates=GO:0007259])] ! parsing: GO:0046534 ! Already have xp for: GO:0046534 positive regulation of photoreceptor cell differentiation ! CURRENT : positive regulation of biological process that regulates photoreceptor cell differentiation [cdef(GO:0048518, [regulates=GO:0046530])] ! parsing: GO:0046579 ! Already have xp for: GO:0046579 positive regulation of Ras protein signal transduction ! CURRENT : positive regulation of biological process that regulates Ras protein signal transduction [cdef(GO:0048518, [regulates=GO:0007265])] ! parsing: GO:0046587 ! Already have xp for: GO:0046587 positive regulation of calcium-dependent cell-cell adhesion ! CURRENT : positive regulation of biological process that regulates calcium-dependent cell-cell adhesion [cdef(GO:0048518, [regulates=GO:0016339])] ! parsing: GO:0046598 ! No parse for: GO:0046598 positive regulation of virion penetration into host cell ! parsing: GO:0046601 ! Already have xp for: GO:0046601 positive regulation of centriole replication ! CURRENT : positive regulation of biological process that regulates centriole replication [cdef(GO:0048518, [regulates=GO:0007099])] ! parsing: GO:0046604 ! Already have xp for: GO:0046604 positive regulation of mitotic centrosome separation ! CURRENT : positive regulation of biological process that regulates mitotic centrosome separation [cdef(GO:0048518, [regulates=GO:0007100])] ! parsing: GO:0046607 ! Already have xp for: GO:0046607 positive regulation of centrosome cycle ! CURRENT : positive regulation of biological process that regulates centrosome cycle [cdef(GO:0048518, [regulates=GO:0007098])] ! parsing: GO:0046622 ! No parse for: GO:0046622 positive regulation of organ growth ! parsing: GO:0046628 ! Already have xp for: GO:0046628 positive regulation of insulin receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates insulin receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0008286])] ! parsing: GO:0046635 ! Already have xp for: GO:0046635 positive regulation of alpha-beta T cell activation ! CURRENT : positive regulation of biological process that regulates alpha-beta T cell activation [cdef(GO:0048518, [regulates=GO:0046631])] ! parsing: GO:0046638 ! Already have xp for: GO:0046638 positive regulation of alpha-beta T cell differentiation ! CURRENT : positive regulation of biological process that regulates alpha-beta T cell differentiation [cdef(GO:0048518, [regulates=GO:0046632])] ! parsing: GO:0046641 ! Already have xp for: GO:0046641 positive regulation of alpha-beta T cell proliferation ! CURRENT : positive regulation of biological process that regulates alpha-beta T cell proliferation [cdef(GO:0048518, [regulates=GO:0046633])] ! parsing: GO:0046645 ! Already have xp for: GO:0046645 positive regulation of gamma-delta T cell activation ! CURRENT : positive regulation of biological process that regulates gamma-delta T cell activation [cdef(GO:0048518, [regulates=GO:0046629])] ! parsing: GO:0046648 ! Already have xp for: GO:0046648 positive regulation of gamma-delta T cell proliferation ! CURRENT : positive regulation of biological process that regulates gamma-delta T cell proliferation [cdef(GO:0048518, [regulates=GO:0046630])] ! parsing: GO:0046670 ! No parse for: GO:0046670 positive regulation of retinal cell programmed cell death ! parsing: GO:0046672 ! Already have xp for: GO:0046672 positive regulation of compound eye retinal cell programmed cell death ! CURRENT : positive regulation of biological process that regulates compound eye retinal cell programmed cell death [cdef(GO:0048518, [regulates=GO:0046667])] ! parsing: GO:0046726 ! No parse for: GO:0046726 positive regulation of viral protein levels in host cell ! parsing: GO:0046784 ! No parse for: GO:0046784 intronless viral mRNA export from host nucleus ! parsing: GO:0046804 ! No parse for: GO:0046804 peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide ! parsing: GO:0046824 ! Already have xp for: GO:0046824 positive regulation of nucleocytoplasmic transport ! CURRENT : positive regulation of biological process that regulates nucleocytoplasmic transport [cdef(GO:0048518, [regulates=GO:0006913])] ! parsing: GO:0046827 ! Already have xp for: GO:0046827 positive regulation of protein export from nucleus ! CURRENT : positive regulation of biological process that regulates protein export from nucleus [cdef(GO:0048518, [regulates=GO:0006611])] ! parsing: GO:0046830 ! Already have xp for: GO:0046830 positive regulation of RNA import into nucleus ! CURRENT : positive regulation of biological process that regulates RNA import into nucleus [cdef(GO:0048518, [regulates=GO:0006404])] ! parsing: GO:0046833 ! Already have xp for: GO:0046833 positive regulation of RNA export from nucleus ! CURRENT : positive regulation of biological process that regulates RNA export from nucleus [cdef(GO:0048518, [regulates=GO:0006405])] ! parsing: GO:0046852 ! Already have xp for: GO:0046852 positive regulation of bone remodeling ! CURRENT : positive regulation of biological process that regulates bone remodeling [cdef(GO:0048518, [regulates=GO:0046849])] ! parsing: GO:0046878 ! Already have xp for: GO:0046878 positive regulation of saliva secretion ! CURRENT : positive regulation of biological process that regulates saliva secretion [cdef(GO:0048518, [regulates=GO:0046541])] ! parsing: GO:0046881 ! Already have xp for: GO:0046881 positive regulation of follicle-stimulating hormone secretion ! CURRENT : positive regulation of biological process that regulates follicle-stimulating hormone secretion [cdef(GO:0048518, [regulates=GO:0046884])] ! parsing: GO:0046886 ! Already have xp for: GO:0046886 positive regulation of hormone biosynthetic process ! CURRENT : positive regulation of biological process that regulates hormone biosynthetic process [cdef(GO:0048518, [regulates=GO:0042446])] ! parsing: GO:0046887 ! Already have xp for: GO:0046887 positive regulation of hormone secretion ! CURRENT : positive regulation of biological process that regulates hormone secretion [cdef(GO:0048518, [regulates=GO:0046879])] ! parsing: GO:0046889 ! Already have xp for: GO:0046889 positive regulation of lipid biosynthetic process ! CURRENT : positive regulation of biological process that regulates lipid biosynthetic process [cdef(GO:0048518, [regulates=GO:0008610])] ! parsing: GO:0046891 ! No parse for: GO:0046891 peptidyl-cysteine S-carbamoylation ! parsing: GO:0046892 ! No parse for: GO:0046892 peptidyl-S-carbamoyl-L-cysteine dehydration ! parsing: GO:0046924 ! No parse for: GO:0046924 peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine ! parsing: GO:0046925 ! No parse for: GO:0046925 peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine ! parsing: GO:0046926 ! No parse for: GO:0046926 peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine ! parsing: GO:0046927 ! No parse for: GO:0046927 peptidyl-threonine racemization ! parsing: GO:0046956 ! No parse for: GO:0046956 positive phototaxis ! parsing: GO:0046968 ! No parse for: GO:0046968 peptide antigen transport ! parsing: GO:0046985 ! Already have xp for: GO:0046985 positive regulation of hemoglobin biosynthetic process ! CURRENT : positive regulation of biological process that regulates hemoglobin biosynthetic process [cdef(GO:0048518, [regulates=GO:0042541])] ! parsing: GO:0048002 ! No parse for: GO:0048002 antigen processing and presentation of peptide antigen ! parsing: GO:0048009 ! No parse for: GO:0048009 insulin-like growth factor receptor signaling pathway ! parsing: GO:0048023 ! Already have xp for: GO:0048023 positive regulation of melanin biosynthetic process ! CURRENT : positive regulation of biological process that regulates melanin biosynthetic process [cdef(GO:0048518, [regulates=GO:0042438])] ! parsing: GO:0048026 ! No parse for: GO:0048026 positive regulation of nuclear mRNA splicing, via spliceosome ! parsing: GO:0048061 ! No parse for: GO:0048061 positive gravitaxis ! parsing: GO:0048075 ! Already have xp for: GO:0048075 positive regulation of eye pigmentation ! CURRENT : positive regulation of biological process that regulates eye pigmentation [cdef(GO:0048518, [regulates=GO:0048069])] ! parsing: GO:0048078 ! Already have xp for: GO:0048078 positive regulation of compound eye pigmentation ! CURRENT : positive regulation of biological process that regulates compound eye pigmentation [cdef(GO:0048518, [regulates=GO:0048072])] ! parsing: GO:0048081 ! Already have xp for: GO:0048081 positive regulation of cuticle pigmentation ! CURRENT : positive regulation of biological process that regulates cuticle pigmentation [cdef(GO:0048518, [regulates=GO:0048067])] ! parsing: GO:0048084 ! Already have xp for: GO:0048084 positive regulation of adult chitin-containing cuticle pigmentation ! CURRENT : positive regulation of biological process that regulates adult chitin-containing cuticle pigmentation [cdef(GO:0048518, [regulates=GO:0048085])] ! parsing: GO:0048087 ! Already have xp for: GO:0048087 positive regulation of pigmentation during development ! CURRENT : positive regulation of biological process that regulates pigmentation [cdef(GO:0048518, [regulates=GO:0043473])] ! parsing: GO:0048091 ! Already have xp for: GO:0048091 positive regulation of female pigmentation ! CURRENT : positive regulation of biological process that regulates female pigmentation [cdef(GO:0048518, [regulates=GO:0048095])] ! parsing: GO:0048093 ! Already have xp for: GO:0048093 positive regulation of male pigmentation ! CURRENT : positive regulation of biological process that regulates male pigmentation [cdef(GO:0048518, [regulates=GO:0048094])] ! parsing: GO:0048108 ! No parse for: GO:0048108 peptide cross-linking via 4-amino-3-isothiazolidinone ! parsing: GO:0048109 ! No parse for: GO:0048109 peptide cross-linking via 2-amino-3-isothiazolidinone-L-serine ! parsing: GO:0048146 ! Already have xp for: GO:0048146 positive regulation of fibroblast proliferation ! CURRENT : positive regulation of biological process that regulates fibroblast proliferation [cdef(GO:0048518, [regulates=GO:0048144])] ! parsing: GO:0048170 ! No parse for: GO:0048170 positive regulation of long-term neuronal synaptic plasticity ! parsing: GO:0048173 ! No parse for: GO:0048173 positive regulation of short-term neuronal synaptic plasticity ! parsing: GO:0048177 ! Already have xp for: GO:0048177 positive regulation of hepatocyte growth factor biosynthetic process ! CURRENT : positive regulation of biological process that regulates hepatocyte growth factor biosynthetic process [cdef(GO:0048518, [regulates=GO:0048175])] ! parsing: GO:0048215 ! Already have xp for: GO:0048215 positive regulation of Golgi vesicle fusion to target membrane ! CURRENT : positive regulation of biological process that regulates Golgi vesicle fusion to target membrane [cdef(GO:0048518, [regulates=GO:0048210])] ! parsing: GO:0048254 ! parse: GO:0048254 using "small nucleolar RNA localization" => cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000275]) [-2] ! parse: GO:0048254 using "snoRNA localization" => cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000275]) [-2] ! no existing xp def ! def: "The processes by which small nucleolar RNA is transported to, or maintained in, a specific location." ! PROPOSED: localization that OBO_REL:results_in_localization_of snoRNA [cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000275])] [Term] id: GO:0048254 ! snoRNA localization intersection_of: GO:0051179 ! localization intersection_of: OBO_REL:results_in_localization_of SO:0000275 ! snoRNA synonym: "clustering of small nucleolar RNA" EXACT [OBOL:automatic] synonym: "establishment and maintenance of localization of small nucleolar RNA" EXACT [OBOL:automatic] synonym: "establishment and maintenance of position of small nucleolar RNA" EXACT [OBOL:automatic] synonym: "localization of small nucleolar RNA" EXACT [OBOL:automatic] synonym: "small nucleolar RNA clustering" EXACT [OBOL:automatic] synonym: "small nucleolar RNA establishment and maintenance of localization" EXACT [OBOL:automatic] synonym: "small nucleolar RNA establishment and maintenance of position" EXACT [OBOL:automatic] ! seconds spent parsing GO:0048254: 5.95 ! parsing: GO:0048255 ! No parse for: GO:0048255 mRNA stabilization ! parsing: GO:0048260 ! No parse for: GO:0048260 positive regulation of receptor-mediated endocytosis ! parsing: GO:0048295 ! Already have xp for: GO:0048295 positive regulation of isotype switching to IgE isotypes ! CURRENT : positive regulation of biological process that regulates isotype switching to IgE isotypes [cdef(GO:0048518, [regulates=GO:0048289])] ! parsing: GO:0048298 ! Already have xp for: GO:0048298 positive regulation of isotype switching to IgA isotypes ! CURRENT : positive regulation of biological process that regulates isotype switching to IgA isotypes [cdef(GO:0048518, [regulates=GO:0048290])] ! parsing: GO:0048301 ! Already have xp for: GO:0048301 positive regulation of isotype switching to IgD isotypes ! CURRENT : positive regulation of biological process that regulates isotype switching to IgD isotypes [cdef(GO:0048518, [regulates=GO:0048292])] ! parsing: GO:0048304 ! Already have xp for: GO:0048304 positive regulation of isotype switching to IgG isotypes ! CURRENT : positive regulation of biological process that regulates isotype switching to IgG isotypes [cdef(GO:0048518, [regulates=GO:0048291])] ! parsing: GO:0048311 ! No parse for: GO:0048311 mitochondrion distribution ! parsing: GO:0048326 ! Already have xp for: GO:0048326 positive regulation of axial mesodermal cell fate determination ! CURRENT : positive regulation of biological process that regulates axial mesodermal cell fate determination [cdef(GO:0048518, [regulates=GO:0048323])] ! parsing: GO:0048330 ! Already have xp for: GO:0048330 positive regulation of axial mesodermal cell fate specification ! CURRENT : positive regulation of biological process that regulates axial mesodermal cell fate specification [cdef(GO:0048518, [regulates=GO:0048327])] ! parsing: GO:0048336 ! Already have xp for: GO:0048336 positive regulation of mesodermal cell fate determination ! CURRENT : positive regulation of biological process that regulates mesodermal cell fate determination [cdef(GO:0048518, [regulates=GO:0007500])] ! parsing: GO:0048337 ! Already have xp for: GO:0048337 positive regulation of mesodermal cell fate specification ! CURRENT : positive regulation of biological process that regulates mesodermal cell fate specification [cdef(GO:0048518, [regulates=GO:0007501])] ! parsing: GO:0048346 ! Already have xp for: GO:0048346 positive regulation of paraxial mesodermal cell fate determination ! CURRENT : positive regulation of biological process that regulates paraxial mesodermal cell fate determination [cdef(GO:0048518, [regulates=GO:0048344])] ! parsing: GO:0048350 ! Already have xp for: GO:0048350 positive regulation of paraxial mesodermal cell fate specification ! CURRENT : positive regulation of biological process that regulates paraxial mesodermal cell fate specification [cdef(GO:0048518, [regulates=GO:0048348])] ! parsing: GO:0048376 ! Already have xp for: GO:0048376 positive regulation of lateral mesodermal cell fate determination ! CURRENT : positive regulation of biological process that regulates lateral mesodermal cell fate determination [cdef(GO:0048518, [regulates=GO:0048373])] ! parsing: GO:0048379 ! Already have xp for: GO:0048379 positive regulation of lateral mesodermal cell fate specification ! CURRENT : positive regulation of biological process that regulates lateral mesodermal cell fate specification [cdef(GO:0048518, [regulates=GO:0048377])] ! parsing: GO:0048386 ! Already have xp for: GO:0048386 positive regulation of retinoic acid receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates retinoic acid receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0048384])] ! parsing: GO:0048397 ! Already have xp for: GO:0048397 positive regulation of intermediate mesodermal cell fate determination ! CURRENT : positive regulation of biological process that regulates intermediate mesodermal cell fate determination [cdef(GO:0048518, [regulates=GO:0048394])] ! parsing: GO:0048400 ! Already have xp for: GO:0048400 positive regulation of intermediate mesodermal cell fate specification ! CURRENT : positive regulation of biological process that regulates intermediate mesodermal cell fate specification [cdef(GO:0048518, [regulates=GO:0048398])] ! parsing: GO:0048518 ! No parse for: GO:0048518 positive regulation of biological process ! parsing: GO:0048520 ! Already have xp for: GO:0048520 positive regulation of behavior ! CURRENT : positive regulation of biological process that regulates behavior [cdef(GO:0048518, [regulates=GO:0007610])] ! parsing: GO:0048522 ! Already have xp for: GO:0048522 positive regulation of cellular process ! CURRENT : positive regulation of biological process that regulates cellular process [cdef(GO:0048518, [regulates=GO:0009987])] ! parsing: GO:0048524 ! No parse for: GO:0048524 positive regulation of viral reproduction ! parsing: GO:0048549 ! Already have xp for: GO:0048549 positive regulation of pinocytosis ! CURRENT : positive regulation of biological process that regulates pinocytosis [cdef(GO:0048518, [regulates=GO:0006907])] ! parsing: GO:0048554 ! No parse for: GO:0048554 positive regulation of metalloenzyme activity ! parsing: GO:0048576 ! No parse for: GO:0048576 positive regulation of short-day photoperiodism, flowering ! parsing: GO:0048578 ! No parse for: GO:0048578 positive regulation of long-day photoperiodism, flowering ! parsing: GO:0048582 ! Already have xp for: GO:0048582 positive regulation of post-embryonic development ! CURRENT : positive regulation of biological process that regulates post-embryonic development [cdef(GO:0048518, [regulates=GO:0009791])] ! parsing: GO:0048584 ! Already have xp for: GO:0048584 positive regulation of response to stimulus ! CURRENT : positive regulation of biological process that regulates response to stimulus [cdef(GO:0048518, [regulates=GO:0050896])] ! parsing: GO:0048633 ! Already have xp for: GO:0048633 positive regulation of skeletal muscle growth ! CURRENT : positive regulation of biological process that regulates skeletal muscle growth [cdef(GO:0048518, [regulates=GO:0048630])] ! parsing: GO:0048636 ! Already have xp for: GO:0048636 positive regulation of muscle development ! CURRENT : positive regulation of biological process that regulates muscle development [cdef(GO:0048518, [regulates=GO:0007517])] ! parsing: GO:0048639 ! Already have xp for: GO:0048639 positive regulation of developmental growth ! CURRENT : positive regulation of biological process that regulates developmental growth [cdef(GO:0048518, [regulates=GO:0048589])] ! parsing: GO:0048643 ! Already have xp for: GO:0048643 positive regulation of skeletal muscle development ! CURRENT : positive regulation of biological process that regulates GO:0048637 [cdef(GO:0048518, [regulates=GO:0048637])] ! parsing: GO:0048645 ! No parse for: GO:0048645 organ formation ! parsing: GO:0048661 ! Already have xp for: GO:0048661 positive regulation of smooth muscle cell proliferation ! CURRENT : positive regulation of biological process that regulates smooth muscle cell proliferation [cdef(GO:0048518, [regulates=GO:0048659])] ! parsing: GO:0048672 ! Already have xp for: GO:0048672 positive regulation of collateral sprouting ! CURRENT : positive regulation of biological process that regulates collateral sprouting [cdef(GO:0048518, [regulates=GO:0048668])] ! parsing: GO:0048680 ! Already have xp for: GO:0048680 positive regulation of axon regeneration ! CURRENT : positive regulation of biological process that regulates axon regeneration [cdef(GO:0048518, [regulates=GO:0031103])] ! parsing: GO:0048684 ! Already have xp for: GO:0048684 positive regulation of collateral sprouting of intact axon in response to injury ! CURRENT : positive regulation of biological process that regulates collateral sprouting of intact axon in response to injury [cdef(GO:0048518, [regulates=GO:0048673])] ! parsing: GO:0048687 ! Already have xp for: GO:0048687 positive regulation of sprouting of injured axon ! CURRENT : positive regulation of biological process that regulates sprouting of injured axon [cdef(GO:0048518, [regulates=GO:0048682])] ! parsing: GO:0048691 ! Already have xp for: GO:0048691 positive regulation of axon extension involved in regeneration ! CURRENT : positive regulation of biological process that regulates axon extension involved in regeneration [cdef(GO:0048518, [regulates=GO:0048677])] ! parsing: GO:0048694 ! Already have xp for: GO:0048694 positive regulation of collateral sprouting of injured axon ! CURRENT : positive regulation of biological process that regulates collateral sprouting of injured axon [cdef(GO:0048518, [regulates=GO:0048674])] ! parsing: GO:0048697 ! Already have xp for: GO:0048697 positive regulation of collateral sprouting in the absence of injury ! CURRENT : positive regulation of biological process that regulates collateral sprouting in the absence of injury [cdef(GO:0048518, [regulates=GO:0048669])] ! parsing: GO:0048699 ! No parse for: GO:0048699 generation of neurons ! parsing: GO:0048709 ! No parse for: GO:0048709 oligodendrocyte differentiation ! parsing: GO:0048711 ! Already have xp for: GO:0048711 positive regulation of astrocyte differentiation ! CURRENT : positive regulation of biological process that regulates astrocyte differentiation [cdef(GO:0048518, [regulates=GO:0048708])] ! parsing: GO:0048714 ! Already have xp for: GO:0048714 positive regulation of oligodendrocyte differentiation ! CURRENT : positive regulation of biological process that regulates oligodendrocyte differentiation [cdef(GO:0048518, [regulates=GO:0048709])] ! parsing: GO:0048743 ! Already have xp for: GO:0048743 positive regulation of skeletal muscle fiber development ! CURRENT : positive regulation of biological process that regulates skeletal muscle fiber development [cdef(GO:0048518, [regulates=GO:0048741])] ! parsing: GO:0048777 ! Already have xp for: GO:0048777 positive regulation of leucophore differentiation ! CURRENT : positive regulation of biological process that regulates leucophore differentiation [cdef(GO:0048518, [regulates=GO:0048772])] ! parsing: GO:0048780 ! Already have xp for: GO:0048780 positive regulation of erythrophore differentiation ! CURRENT : positive regulation of biological process that regulates erythrophore differentiation [cdef(GO:0048518, [regulates=GO:0048773])] ! parsing: GO:0048783 ! Already have xp for: GO:0048783 positive regulation of cyanophore differentiation ! CURRENT : positive regulation of biological process that regulates cyanophore differentiation [cdef(GO:0048518, [regulates=GO:0048774])] ! parsing: GO:0048818 ! Already have xp for: GO:0048818 positive regulation of hair follicle maturation ! CURRENT : positive regulation of biological process that regulates hair follicle maturation [cdef(GO:0048518, [regulates=GO:0048820])] ! parsing: GO:0048842 ! Already have xp for: GO:0048842 positive regulation of axon extension involved in axon guidance ! CURRENT : positive regulation of biological process that regulates axon extension involved in axon guidance [cdef(GO:0048518, [regulates=GO:0048846])] ! parsing: GO:0050000 ! parse: GO:0050000 using "chromosome localization" => cdef(GO:0051179, [OBO_REL:results_in_localization_of=GO:0005694]) [-2] ! parse: GO:0050000 using "chromosome localization" => cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000340]) [-2] ! no existing xp def ! def: "The processes by which a chromosome is transported to, or maintained in, a specific location." ! PROPOSED: localization that OBO_REL:results_in_localization_of chromosome [cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000340])] [Term] id: GO:0050000 ! chromosome localization intersection_of: GO:0051179 ! localization intersection_of: OBO_REL:results_in_localization_of SO:0000340 ! chromosome ! seconds spent parsing GO:0050000: 5.29 ! parsing: GO:0050434 ! Already have xp for: GO:0050434 positive regulation of viral transcription ! CURRENT : positive regulation of biological process that regulates viral transcription [cdef(GO:0048518, [regulates=GO:0019083])] ! parsing: GO:0050495 ! No parse for: GO:0050495 peptidyl-glycyl-phosphatidylethanolamine biosynthetic process from peptidyl-glycine ! parsing: GO:0050496 ! No parse for: GO:0050496 peptidyl-L-glutamyl 5-omega-hydroxyceramide ester biosynthetic process from peptidyl-glutamine ! parsing: GO:0050668 ! Already have xp for: GO:0050668 positive regulation of homocysteine metabolic process ! CURRENT : positive regulation of biological process that regulates homocysteine metabolic process [cdef(GO:0048518, [regulates=GO:0050667])] ! parsing: GO:0050671 ! Already have xp for: GO:0050671 positive regulation of lymphocyte proliferation ! CURRENT : positive regulation of biological process that regulates lymphocyte proliferation [cdef(GO:0048518, [regulates=GO:0046651])] ! parsing: GO:0050677 ! Already have xp for: GO:0050677 positive regulation of urothelial cell proliferation ! CURRENT : positive regulation of biological process that regulates urothelial cell proliferation [cdef(GO:0048518, [regulates=GO:0050674])] ! parsing: GO:0050679 ! Already have xp for: GO:0050679 positive regulation of epithelial cell proliferation ! CURRENT : positive regulation of biological process that regulates epithelial cell proliferation [cdef(GO:0048518, [regulates=GO:0050673])] ! parsing: GO:0050685 ! Already have xp for: GO:0050685 positive regulation of mRNA processing ! CURRENT : positive regulation of biological process that regulates mRNA processing [cdef(GO:0048518, [regulates=GO:0006397])] ! parsing: GO:0050714 ! Already have xp for: GO:0050714 positive regulation of protein secretion ! CURRENT : positive regulation of biological process that regulates protein secretion [cdef(GO:0048518, [regulates=GO:0009306])] ! parsing: GO:0050715 ! Already have xp for: GO:0050715 positive regulation of cytokine secretion ! CURRENT : positive regulation of biological process that regulates cytokine secretion [cdef(GO:0048518, [regulates=GO:0050663])] ! parsing: GO:0050716 ! Already have xp for: GO:0050716 positive regulation of interleukin-1 secretion ! CURRENT : positive regulation of biological process that regulates interleukin-1 secretion [cdef(GO:0048518, [regulates=GO:0050701])] ! parsing: GO:0050717 ! Already have xp for: GO:0050717 positive regulation of interleukin-1 alpha secretion ! CURRENT : positive regulation of biological process that regulates interleukin-1 alpha secretion [cdef(GO:0048518, [regulates=GO:0050703])] ! parsing: GO:0050718 ! Already have xp for: GO:0050718 positive regulation of interleukin-1 beta secretion ! CURRENT : positive regulation of biological process that regulates interleukin-1 beta secretion [cdef(GO:0048518, [regulates=GO:0050702])] ! parsing: GO:0050725 ! Already have xp for: GO:0050725 positive regulation of interleukin-1 beta biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-1 beta biosynthetic process [cdef(GO:0048518, [regulates=GO:0050720])] ! parsing: GO:0050726 ! Already have xp for: GO:0050726 positive regulation of interleukin-1 alpha biosynthetic process ! CURRENT : positive regulation of biological process that regulates interleukin-1 alpha biosynthetic process [cdef(GO:0048518, [regulates=GO:0050719])] ! parsing: GO:0050729 ! Already have xp for: GO:0050729 positive regulation of inflammatory response ! CURRENT : positive regulation of biological process that regulates inflammatory response [cdef(GO:0048518, [regulates=GO:0006954])] ! parsing: GO:0050731 ! Already have xp for: GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation ! CURRENT : positive regulation of biological process that regulates peptidyl-tyrosine phosphorylation [cdef(GO:0048518, [regulates=GO:0018108])] ! parsing: GO:0050739 ! No parse for: GO:0050739 peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium ! parsing: GO:0050745 ! No parse for: GO:0050745 peptide cross-linking via L-cysteinyl-5-imidazolinone glycine ! parsing: GO:0050747 ! Already have xp for: GO:0050747 positive regulation of lipoprotein metabolic process ! CURRENT : positive regulation of biological process that regulates lipoprotein metabolic process [cdef(GO:0048518, [regulates=GO:0042157])] ! parsing: GO:0050754 ! Already have xp for: GO:0050754 positive regulation of fractalkine biosynthetic process ! CURRENT : positive regulation of biological process that regulates fractalkine biosynthetic process [cdef(GO:0048518, [regulates=GO:0050751])] ! parsing: GO:0050759 ! Already have xp for: GO:0050759 positive regulation of thymidylate synthase biosynthetic process ! CURRENT : positive regulation of biological process that regulates thymidylate synthase biosynthetic process [cdef(GO:0048518, [regulates=GO:0050757])] ! parsing: GO:0050766 ! Already have xp for: GO:0050766 positive regulation of phagocytosis ! CURRENT : positive regulation of biological process that regulates phagocytosis [cdef(GO:0048518, [regulates=GO:0006909])] ! parsing: GO:0050769 ! Already have xp for: GO:0050769 positive regulation of neurogenesis ! CURRENT : positive regulation of biological process that regulates neurogenesis [cdef(GO:0048518, [regulates=GO:0022008])] ! parsing: GO:0050772 ! Already have xp for: GO:0050772 positive regulation of axonogenesis ! CURRENT : positive regulation of biological process that regulates axonogenesis [cdef(GO:0048518, [regulates=GO:0007409])] ! parsing: GO:0050775 ! Already have xp for: GO:0050775 positive regulation of dendrite morphogenesis ! CURRENT : positive regulation of biological process that regulates dendrite morphogenesis [cdef(GO:0048518, [regulates=GO:0048813])] ! parsing: GO:0050778 ! Already have xp for: GO:0050778 positive regulation of immune response ! CURRENT : positive regulation of biological process that regulates immune response [cdef(GO:0048518, [regulates=GO:0006955])] ! parsing: GO:0050806 ! Already have xp for: GO:0050806 positive regulation of synaptic transmission ! CURRENT : positive regulation of biological process that regulates synaptic transmission [cdef(GO:0048518, [regulates=GO:0007268])] ! parsing: GO:0050820 ! Already have xp for: GO:0050820 positive regulation of coagulation ! CURRENT : positive regulation of biological process that regulates coagulation [cdef(GO:0048518, [regulates=GO:0050817])] ! parsing: GO:0050821 ! No parse for: GO:0050821 protein stabilization ! parsing: GO:0050822 ! No parse for: GO:0050822 peptide stabilization ! parsing: GO:0050823 ! No parse for: GO:0050823 peptide antigen stabilization ! parsing: GO:0050837 ! No parse for: GO:0050837 peptide cross-linking via L-cysteinyl-L-selenocysteine ! parsing: GO:0050838 ! No parse for: GO:0050838 peptidyl-5-hydroxy-L-lysine tri-methylation ! parsing: GO:0050841 ! No parse for: GO:0050841 peptidyl-N6,N6,N6-trimethyl-lysine hydroxylation to peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine ! parsing: GO:0050844 ! No parse for: GO:0050844 peptidyl-selenocysteine modification ! parsing: GO:0050850 ! Already have xp for: GO:0050850 positive regulation of calcium-mediated signaling ! CURRENT : positive regulation of biological process that regulates calcium-mediated signaling [cdef(GO:0048518, [regulates=GO:0019722])] ! parsing: GO:0050857 ! Already have xp for: GO:0050857 positive regulation of antigen receptor-mediated signaling pathway ! CURRENT : positive regulation of biological process that regulates antigen receptor-mediated signaling pathway [cdef(GO:0048518, [regulates=GO:0050851])] ! parsing: GO:0050861 ! Already have xp for: GO:0050861 positive regulation of B cell receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates B cell receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0050853])] ! parsing: GO:0050862 ! Already have xp for: GO:0050862 positive regulation of T cell receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates T cell receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0050852])] ! parsing: GO:0050867 ! Already have xp for: GO:0050867 positive regulation of cell activation ! CURRENT : positive regulation of biological process that regulates cell activation [cdef(GO:0048518, [regulates=GO:0001775])] ! parsing: GO:0050870 ! Already have xp for: GO:0050870 positive regulation of T cell activation ! CURRENT : positive regulation of biological process that regulates T cell activation [cdef(GO:0048518, [regulates=GO:0042110])] ! parsing: GO:0050871 ! Already have xp for: GO:0050871 positive regulation of B cell activation ! CURRENT : positive regulation of biological process that regulates B cell activation [cdef(GO:0048518, [regulates=GO:0042113])] ! parsing: GO:0050918 ! No parse for: GO:0050918 positive chemotaxis ! parsing: GO:0050921 ! Already have xp for: GO:0050921 positive regulation of chemotaxis ! CURRENT : positive regulation of biological process that regulates chemotaxis [cdef(GO:0048518, [regulates=GO:0006935])] ! parsing: GO:0050924 ! Already have xp for: GO:0050924 positive regulation of negative chemotaxis ! CURRENT : positive regulation of biological process that regulates negative chemotaxis [cdef(GO:0048518, [regulates=GO:0050919])] ! parsing: GO:0050927 ! Already have xp for: GO:0050927 positive regulation of positive chemotaxis ! CURRENT : positive regulation of biological process that regulates positive chemotaxis [cdef(GO:0048518, [regulates=GO:0050918])] ! parsing: GO:0050942 ! Already have xp for: GO:0050942 positive regulation of pigment cell differentiation ! CURRENT : positive regulation of biological process that regulates pigment cell differentiation [cdef(GO:0048518, [regulates=GO:0050931])] ! parsing: GO:0050945 ! Already have xp for: GO:0050945 positive regulation of iridophore differentiation ! CURRENT : positive regulation of biological process that regulates iridophore differentiation [cdef(GO:0048518, [regulates=GO:0050935])] ! parsing: GO:0050946 ! Already have xp for: GO:0050946 positive regulation of xanthophore differentiation ! CURRENT : positive regulation of biological process that regulates xanthophore differentiation [cdef(GO:0048518, [regulates=GO:0050936])] ! parsing: GO:0050948 ! Already have xp for: GO:0050948 positive regulation of early stripe melanocyte differentiation ! CURRENT : positive regulation of biological process that regulates early stripe melanocyte differentiation [cdef(GO:0048518, [regulates=GO:0050933])] ! parsing: GO:0050950 ! Already have xp for: GO:0050950 positive regulation of late stripe melanocyte differentiation ! CURRENT : positive regulation of biological process that regulates late stripe melanocyte differentiation [cdef(GO:0048518, [regulates=GO:0050934])] ! parsing: GO:0050984 ! No parse for: GO:0050984 peptidyl-serine sulfation ! parsing: GO:0050985 ! No parse for: GO:0050985 peptidyl-threonine sulfation ! parsing: GO:0050996 ! Already have xp for: GO:0050996 positive regulation of lipid catabolic process ! CURRENT : positive regulation of biological process that regulates lipid catabolic process [cdef(GO:0048518, [regulates=GO:0016042])] ! parsing: GO:0051000 ! No parse for: GO:0051000 positive regulation of nitric-oxide synthase activity ! parsing: GO:0051006 ! No parse for: GO:0051006 positive regulation of lipoprotein lipase activity ! parsing: GO:0051024 ! Already have xp for: GO:0051024 positive regulation of immunoglobulin secretion ! CURRENT : positive regulation of biological process that regulates immunoglobulin secretion [cdef(GO:0048518, [regulates=GO:0048305])] ! parsing: GO:0051028 ! parse: GO:0051028 using "mRNA transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000234]) [-2] ! no existing xp def ! def: "The directed movement of mRNA, messenger ribonucleic acid, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of mRNA [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000234])] [Term] id: GO:0051028 ! mRNA transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0000234 ! mRNA synonym: "messenger RNA transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051028: 2.56 ! parsing: GO:0051029 ! parse: GO:0051029 using "rRNA transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000252]) [-2] ! no existing xp def ! def: "The directed movement of rRNA, ribosomal ribonucleic acid, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of rRNA [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000252])] [Term] id: GO:0051029 ! rRNA transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0000252 ! rRNA synonym: "ribosomal RNA transport" EXACT [OBOL:automatic] synonym: "ribosomal ribonucleic acid transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051029: 2.56 ! parsing: GO:0051030 ! parse: GO:0051030 using "snRNA transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000274]) [-2] ! no existing xp def ! def: "The directed movement of snRNA, small nuclear ribonucleic acid, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of snRNA [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000274])] [Term] id: GO:0051030 ! snRNA transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0000274 ! snRNA synonym: "small nuclear RNA transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051030: 2.58 ! parsing: GO:0051031 ! parse: GO:0051031 using "tRNA transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000253]) [-2] ! no existing xp def ! def: "The directed movement of tRNA, transfer ribonucleic acid, into, out of, within or between cells." ! PROPOSED: transport that OBO_REL:results_in_transport_of tRNA [cdef(GO:0006810, [OBO_REL:results_in_transport_of=SO:0000253])] [Term] id: GO:0051031 ! tRNA transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of SO:0000253 ! tRNA ! seconds spent parsing GO:0051031: 2.56 ! parsing: GO:0051039 ! No parse for: GO:0051039 positive regulation of transcription, meiotic ! parsing: GO:0051041 ! Already have xp for: GO:0051041 positive regulation of calcium-independent cell-cell adhesion ! CURRENT : positive regulation of biological process that regulates calcium-independent cell-cell adhesion [cdef(GO:0048518, [regulates=GO:0016338])] ! parsing: GO:0051044 ! Already have xp for: GO:0051044 positive regulation of membrane protein ectodomain proteolysis ! CURRENT : positive regulation of biological process that regulates membrane protein ectodomain proteolysis [cdef(GO:0048518, [regulates=GO:0006509])] ! parsing: GO:0051047 ! Already have xp for: GO:0051047 positive regulation of secretion ! CURRENT : positive regulation of biological process that regulates secretion [cdef(GO:0048518, [regulates=GO:0046903])] ! parsing: GO:0051050 ! Already have xp for: GO:0051050 positive regulation of transport ! CURRENT : positive regulation of biological process that regulates transport [cdef(GO:0048518, [regulates=GO:0006810])] ! parsing: GO:0051054 ! Already have xp for: GO:0051054 positive regulation of DNA metabolic process ! CURRENT : positive regulation of biological process that regulates DNA metabolic process [cdef(GO:0048518, [regulates=GO:0006259])] ! parsing: GO:0051057 ! Already have xp for: GO:0051057 positive regulation of small GTPase mediated signal transduction ! CURRENT : positive regulation of biological process that regulates small GTPase mediated signal transduction [cdef(GO:0048518, [regulates=GO:0007264])] ! parsing: GO:0051091 ! No parse for: GO:0051091 positive regulation of transcription factor activity ! parsing: GO:0051094 ! Already have xp for: GO:0051094 positive regulation of developmental process ! CURRENT : positive regulation of biological process that regulates developmental process [cdef(GO:0048518, [regulates=GO:0032502])] ! parsing: GO:0051096 ! No parse for: GO:0051096 positive regulation of helicase activity ! parsing: GO:0051099 ! No parse for: GO:0051099 positive regulation of binding ! parsing: GO:0051106 ! Already have xp for: GO:0051106 positive regulation of DNA ligation ! CURRENT : positive regulation of biological process that regulates DNA ligation [cdef(GO:0048518, [regulates=GO:0006266])] ! parsing: GO:0051110 ! No parse for: GO:0051110 peptidyl-histidine uridylylation, to form peptidyl-1'-(phospho-5'-uridine)-L-histidine ! parsing: GO:0051111 ! No parse for: GO:0051111 peptidyl-histidine adenylylation ! parsing: GO:0051112 ! No parse for: GO:0051112 peptidyl-histidine adenylylation, to form peptidyl-1'-(phospho-5'-adenosine)-L-histidine ! parsing: GO:0051114 ! No parse for: GO:0051114 peptidyl-histidine uridylylation ! parsing: GO:0051123 ! No parse for: GO:0051123 transcriptional preinitiation complex assembly ! parsing: GO:0051127 ! Already have xp for: GO:0051127 positive regulation of actin nucleation ! CURRENT : positive regulation of biological process that regulates actin nucleation [cdef(GO:0048518, [regulates=GO:0045010])] ! parsing: GO:0051130 ! No parse for: GO:0051130 positive regulation of cellular component organization and biogenesis ! parsing: GO:0051135 ! Already have xp for: GO:0051135 positive regulation of NK T cell activation ! CURRENT : positive regulation of biological process that regulates NK T cell activation [cdef(GO:0048518, [regulates=GO:0051132])] ! parsing: GO:0051138 ! Already have xp for: GO:0051138 positive regulation of NK T cell differentiation ! CURRENT : positive regulation of biological process that regulates NK T cell differentiation [cdef(GO:0048518, [regulates=GO:0001865])] ! parsing: GO:0051142 ! Already have xp for: GO:0051142 positive regulation of NK T cell proliferation ! CURRENT : positive regulation of biological process that regulates NK T cell proliferation [cdef(GO:0048518, [regulates=GO:0001866])] ! parsing: GO:0051149 ! Already have xp for: GO:0051149 positive regulation of muscle cell differentiation ! CURRENT : positive regulation of biological process that regulates muscle cell differentiation [cdef(GO:0048518, [regulates=GO:0042692])] ! parsing: GO:0051152 ! Already have xp for: GO:0051152 positive regulation of smooth muscle cell differentiation ! CURRENT : positive regulation of biological process that regulates smooth muscle cell differentiation [cdef(GO:0048518, [regulates=GO:0051145])] ! parsing: GO:0051155 ! Already have xp for: GO:0051155 positive regulation of striated muscle cell differentiation ! CURRENT : positive regulation of biological process that regulates striated muscle cell differentiation [cdef(GO:0048518, [regulates=GO:0051146])] ! parsing: GO:0051173 ! No parse for: GO:0051173 positive regulation of nitrogen compound metabolic process ! parsing: GO:0051176 ! Already have xp for: GO:0051176 positive regulation of sulfur metabolic process ! CURRENT : positive regulation of biological process that regulates sulfur metabolic process [cdef(GO:0048518, [regulates=GO:0006790])] ! parsing: GO:0051194 ! Already have xp for: GO:0051194 positive regulation of cofactor metabolic process ! CURRENT : positive regulation of biological process that regulates cofactor metabolic process [cdef(GO:0048518, [regulates=GO:0051186])] ! parsing: GO:0051197 ! Already have xp for: GO:0051197 positive regulation of coenzyme metabolic process ! CURRENT : positive regulation of biological process that regulates coenzyme metabolic process [cdef(GO:0048518, [regulates=GO:0006732])] ! parsing: GO:0051200 ! Already have xp for: GO:0051200 positive regulation of prosthetic group metabolic process ! CURRENT : positive regulation of biological process that regulates prosthetic group metabolic process [cdef(GO:0048518, [regulates=GO:0051189])] ! parsing: GO:0051203 ! No parse for: GO:0051203 peptidyl-aspartic acid reduction to form L-aspartyl aldehyde ! parsing: GO:0051204 ! parse: GO:0051204 using "localization of protein in mitochondrial membrane" => cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=CHEBI:36080]), [OBO_REL:unfolds_in=GO:0031966]) [-4] ! parse: GO:0051204 using "localization of protein in mitochondrial membrane" => cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]), [OBO_REL:unfolds_in=GO:0031966]) [-4] ! no existing xp def ! def: "The process by which a protein is incorporated into a mitochondrial membrane." ! PROPOSED: cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]) that OBO_REL:unfolds_in mitochondrial membrane [cdef(cdef(GO:0051179, [OBO_REL:results_in_localization_of=SO:0000358]), [OBO_REL:unfolds_in=GO:0031966])] [Term] id: GO:0051204 ! protein insertion into mitochondrial membrane intersection_of: _:cdef__GO_0051179_____OBO_REL_results_in_localization_of___SO_0000358___ intersection_of: OBO_REL:unfolds_in GO:0031966 ! mitochondrial membrane ! seconds spent parsing GO:0051204: 16.52 ! parsing: GO:0051222 ! Already have xp for: GO:0051222 positive regulation of protein transport ! CURRENT : positive regulation of biological process that regulates protein transport [cdef(GO:0048518, [regulates=GO:0015031])] ! parsing: GO:0051238 ! No parse for: GO:0051238 sequestering of metal ion ! parsing: GO:0051240 ! Already have xp for: GO:0051240 positive regulation of multicellular organismal process ! CURRENT : positive regulation of biological process that regulates multicellular organismal process [cdef(GO:0048518, [regulates=GO:0032501])] ! parsing: GO:0051247 ! Already have xp for: GO:0051247 positive regulation of protein metabolic process ! CURRENT : positive regulation of biological process that regulates protein metabolic process [cdef(GO:0048518, [regulates=GO:0019538])] ! parsing: GO:0051251 ! Already have xp for: GO:0051251 positive regulation of lymphocyte activation ! CURRENT : positive regulation of biological process that regulates lymphocyte activation [cdef(GO:0048518, [regulates=GO:0046649])] ! parsing: GO:0051254 ! Already have xp for: GO:0051254 positive regulation of RNA metabolic process ! CURRENT : positive regulation of biological process that regulates RNA metabolic process [cdef(GO:0048518, [regulates=GO:0016070])] ! parsing: GO:0051272 ! Already have xp for: GO:0051272 positive regulation of cell motility ! CURRENT : positive regulation of biological process that regulates cell motility [cdef(GO:0048518, [regulates=GO:0006928])] ! parsing: GO:0051276 ! No parse for: GO:0051276 chromosome organization and biogenesis ! parsing: GO:0051281 ! Already have xp for: GO:0051281 positive regulation of release of sequestered calcium ion into cytosol ! CURRENT : positive regulation of biological process that regulates release of sequestered calcium ion into cytosol [cdef(GO:0048518, [regulates=GO:0051209])] ! parsing: GO:0051284 ! Already have xp for: GO:0051284 positive regulation of sequestering of calcium ion ! CURRENT : positive regulation of biological process that regulates sequestering of calcium ion [cdef(GO:0048518, [regulates=GO:0051208])] ! parsing: GO:0051303 ! No parse for: GO:0051303 establishment of chromosome localization ! parsing: GO:0051304 ! No parse for: GO:0051304 chromosome separation ! parsing: GO:0051305 ! No parse for: GO:0051305 chromosome movement towards spindle pole ! parsing: GO:0051306 ! No parse for: GO:0051306 mitotic sister chromatid separation ! parsing: GO:0051307 ! parse: GO:0051307 using "meiotic chromosome separation" => cdef(GO:0051304, [OBO_REL:part_of=GO:0007126]) [-2] ! no existing xp def ! def: "The process by which chromosomes are physically detached from each other during meiosis." ! PROPOSED: chromosome separation that OBO_REL:part_of meiosis [cdef(GO:0051304, [OBO_REL:part_of=GO:0007126])] [Term] id: GO:0051307 ! meiotic chromosome separation intersection_of: GO:0051304 ! chromosome separation intersection_of: OBO_REL:part_of GO:0007126 ! meiosis ! seconds spent parsing GO:0051307: 3.28 ! parsing: GO:0051308 ! No parse for: GO:0051308 male meiosis chromosome separation ! parsing: GO:0051309 ! No parse for: GO:0051309 female meiosis chromosome separation ! parsing: GO:0051312 ! No parse for: GO:0051312 chromosome decondensation ! parsing: GO:0051343 ! No parse for: GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity ! parsing: GO:0051345 ! No parse for: GO:0051345 positive regulation of hydrolase activity ! parsing: GO:0051347 ! No parse for: GO:0051347 positive regulation of transferase activity ! parsing: GO:0051349 ! No parse for: GO:0051349 positive regulation of lyase activity ! parsing: GO:0051351 ! No parse for: GO:0051351 positive regulation of ligase activity ! parsing: GO:0051353 ! No parse for: GO:0051353 positive regulation of oxidoreductase activity ! parsing: GO:0051357 ! No parse for: GO:0051357 peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one ! parsing: GO:0051358 ! No parse for: GO:0051358 peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine ! parsing: GO:0051359 ! No parse for: GO:0051359 peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine ! parsing: GO:0051360 ! No parse for: GO:0051360 peptide cross-linking via L-asparagine 5-imidazolinone glycine ! parsing: GO:0051361 ! No parse for: GO:0051361 peptide cross-linking via L-lysine 5-imidazolinone glycine ! parsing: GO:0051362 ! No parse for: GO:0051362 peptide cross-linking via 2-tetrahydropyridinyl-5-imidazolinone glycine ! parsing: GO:0051363 ! No parse for: GO:0051363 peptidoglycan-protein cross-linking via L-alanyl-pentaglycyl-murein ! parsing: GO:0051367 ! No parse for: GO:0051367 peptidyl-serine decanoylation ! parsing: GO:0051368 ! No parse for: GO:0051368 peptidyl-threonine octanoylation ! parsing: GO:0051369 ! No parse for: GO:0051369 peptidyl-threonine decanoylation ! parsing: GO:0051382 ! parse: GO:0051382 using "kinetochore biosynthesis" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0000776]) [-2] ! parse: GO:0051382 using "kinetochore formation" => cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0000776]) [-2] ! no existing xp def ! def: "The aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the pericentric region of DNA and provides an attachment point for the spindle microtubules." ! PROPOSED: biosynthetic process that OBO_REL:results_in_formation_of kinetochore [cdef(GO:0009058, [OBO_REL:results_in_formation_of=GO:0000776])] [Term] id: GO:0051382 ! kinetochore assembly intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of GO:0000776 ! kinetochore ! seconds spent parsing GO:0051382: 7.11 ! parsing: GO:0051388 ! Already have xp for: GO:0051388 positive regulation of nerve growth factor receptor signaling pathway ! CURRENT : positive regulation of biological process that regulates nerve growth factor receptor signaling pathway [cdef(GO:0048518, [regulates=GO:0048011])] ! parsing: GO:0051389 ! No parse for: GO:0051389 inactivation of MAPKK activity ! parsing: GO:0051390 ! No parse for: GO:0051390 inactivation of MAPKKK activity ! parsing: GO:0051391 ! parse: GO:0051391 using "tRNA acetylation" => cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=SO:0000253]) [-3] ! no existing xp def ! def: "The modification of tRNA structure by addition of an acetyl group to tRNA. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid." ! PROPOSED: metabolic process that OBO_REL:results_in_addition_of acetyl group and OBO_REL:results_in_addition_to tRNA [cdef(GO:0008152, [OBO_REL:results_in_addition_of=CHEBI:40574, OBO_REL:results_in_addition_to=SO:0000253])] [Term] id: GO:0051391 ! tRNA acetylation intersection_of: GO:0008152 ! metabolic process intersection_of: OBO_REL:results_in_addition_of CHEBI:40574 ! acetyl group intersection_of: OBO_REL:results_in_addition_to SO:0000253 ! tRNA ! seconds spent parsing GO:0051391: 1.72 ! parsing: GO:0051396 ! No parse for: GO:0051396 positive regulation of nerve growth factor receptor activity ! parsing: GO:0051423 ! No parse for: GO:0051423 positive regulation of endo-1,4-beta-xylanase activity ! parsing: GO:0051437 ! No parse for: GO:0051437 positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle ! parsing: GO:0051441 ! No parse for: GO:0051441 positive regulation of ubiquitin-protein ligase activity during meiotic cell cycle ! parsing: GO:0051443 ! No parse for: GO:0051443 positive regulation of ubiquitin-protein ligase activity ! parsing: GO:0051446 ! No parse for: GO:0051446 positive regulation of meiotic cell cycle ! parsing: GO:0051461 ! Already have xp for: GO:0051461 positive regulation of adrenocorticotropic hormone secretion ! CURRENT : positive regulation of biological process that regulates adrenocorticotropin hormone secretion [cdef(GO:0048518, [regulates=GO:0051458])] ! parsing: GO:0051464 ! Already have xp for: GO:0051464 positive regulation of cortisol secretion ! CURRENT : positive regulation of biological process that regulates cortisol secretion [cdef(GO:0048518, [regulates=GO:0043400])] ! parsing: GO:0051466 ! Already have xp for: GO:0051466 positive regulation of corticotropin-releasing hormone secretion ! CURRENT : positive regulation of biological process that regulates corticotropin-releasing hormone secretion [cdef(GO:0048518, [regulates=GO:0043396])] ! parsing: GO:0051491 ! Already have xp for: GO:0051491 positive regulation of filopodium formation ! CURRENT : positive regulation of biological process that regulates filopodium formation [cdef(GO:0048518, [regulates=GO:0046847])] ! parsing: GO:0051495 ! Already have xp for: GO:0051495 positive regulation of cytoskeleton organization and biogenesis ! CURRENT : positive regulation of biological process that regulates cytoskeleton organization and biogenesis [cdef(GO:0048518, [regulates=GO:0007010])] ! parsing: GO:0051496 ! Already have xp for: GO:0051496 positive regulation of stress fiber formation ! CURRENT : positive regulation of biological process that regulates stress fiber formation [cdef(GO:0048518, [regulates=GO:0043149])] ! parsing: GO:0051512 ! Already have xp for: GO:0051512 positive regulation of unidimensional cell growth ! CURRENT : positive regulation of biological process that regulates unidimensional cell growth [cdef(GO:0048518, [regulates=GO:0009826])] ! parsing: GO:0051515 ! Already have xp for: GO:0051515 positive regulation of monopolar cell growth ! CURRENT : positive regulation of biological process that regulates monopolar cell growth [cdef(GO:0048518, [regulates=GO:0042814])] ! parsing: GO:0051518 ! Already have xp for: GO:0051518 positive regulation of bipolar cell growth ! CURRENT : positive regulation of biological process that regulates bipolar cell growth [cdef(GO:0048518, [regulates=GO:0042815])] ! parsing: GO:0051520 ! No parse for: GO:0051520 termination of bipolar cell growth ! parsing: GO:0051521 ! No parse for: GO:0051521 termination of monopolar cell growth ! parsing: GO:0051533 ! Already have xp for: GO:0051533 positive regulation of NFAT protein import into nucleus ! CURRENT : positive regulation of biological process that regulates NFAT protein import into nucleus [cdef(GO:0048518, [regulates=GO:0051531])] ! parsing: GO:0051544 ! Already have xp for: GO:0051544 positive regulation of elastin biosynthetic process ! CURRENT : positive regulation of biological process that regulates elastin biosynthetic process [cdef(GO:0048518, [regulates=GO:0051542])] ! parsing: GO:0051549 ! Already have xp for: GO:0051549 positive regulation of keratinocyte migration ! CURRENT : positive regulation of biological process that regulates keratinocyte migration [cdef(GO:0048518, [regulates=GO:0051546])] ! parsing: GO:0051571 ! No parse for: GO:0051571 positive regulation of histone H3-K4 methylation ! parsing: GO:0051574 ! No parse for: GO:0051574 positive regulation of histone H3-K9 methylation ! parsing: GO:0051582 ! Already have xp for: GO:0051582 positive regulation of neurotransmitter uptake ! CURRENT : positive regulation of biological process that regulates neurotransmitter uptake [cdef(GO:0048518, [regulates=GO:0001504])] ! parsing: GO:0051586 ! Already have xp for: GO:0051586 positive regulation of dopamine uptake ! CURRENT : positive regulation of biological process that regulates dopamine uptake [cdef(GO:0048518, [regulates=GO:0051583])] ! parsing: GO:0051590 ! Already have xp for: GO:0051590 positive regulation of neurotransmitter transport ! CURRENT : positive regulation of biological process that regulates neurotransmitter transport [cdef(GO:0048518, [regulates=GO:0006836])] ! parsing: GO:0051603 ! No parse for: GO:0051603 proteolysis involved in cellular protein catabolic process ! parsing: GO:0051605 ! No parse for: GO:0051605 protein maturation via proteolysis ! parsing: GO:0051613 ! Already have xp for: GO:0051613 positive regulation of serotonin uptake ! CURRENT : positive regulation of biological process that regulates serotonin uptake [cdef(GO:0048518, [regulates=GO:0051610])] ! parsing: GO:0051618 ! Already have xp for: GO:0051618 positive regulation of histamine uptake ! CURRENT : positive regulation of biological process that regulates histamine uptake [cdef(GO:0048518, [regulates=GO:0051615])] ! parsing: GO:0051623 ! Already have xp for: GO:0051623 positive regulation of norepinephrine uptake ! CURRENT : positive regulation of biological process that regulates norepinephrine uptake [cdef(GO:0048518, [regulates=GO:0051620])] ! parsing: GO:0051628 ! Already have xp for: GO:0051628 positive regulation of epinephrine uptake ! CURRENT : positive regulation of biological process that regulates epinephrine uptake [cdef(GO:0048518, [regulates=GO:0051625])] ! parsing: GO:0051633 ! Already have xp for: GO:0051633 positive regulation of acetylcholine uptake ! CURRENT : positive regulation of biological process that regulates acetylcholine uptake [cdef(GO:0048518, [regulates=GO:0051630])] ! parsing: GO:0051649 ! No parse for: GO:0051649 establishment of cellular localization ! parsing: GO:0051668 ! parse: GO:0051668 using "establishment and maintenance of localization in membrane" => cdef(GO:0051179, [OBO_REL:unfolds_in=GO:0016020]) [-2] ! parse: GO:0051668 using "establishment and maintenance of position in membrane" => cdef(GO:0051179, [OBO_REL:unfolds_in=GO:0016020]) [-2] ! no existing xp def ! def: "The processes by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a membrane." ! PROPOSED: localization that OBO_REL:unfolds_in membrane [cdef(GO:0051179, [OBO_REL:unfolds_in=GO:0016020])] [Term] id: GO:0051668 ! localization within membrane intersection_of: GO:0051179 ! localization intersection_of: OBO_REL:unfolds_in GO:0016020 ! membrane ! seconds spent parsing GO:0051668: 5.13 ! parsing: GO:0051671 ! No parse for: GO:0051671 induction of autolysin activity in another organism ! parsing: GO:0051712 ! Already have xp for: GO:0051712 positive regulation of killing of cells of another organism ! CURRENT : positive regulation of biological process that regulates killing of cells of another organism [cdef(GO:0048518, [regulates=GO:0031640])] ! parsing: GO:0051714 ! Already have xp for: GO:0051714 positive regulation of cytolysis of cells of another organism ! CURRENT : positive regulation of biological process that regulates cytolysis of cells of another organism [cdef(GO:0048518, [regulates=GO:0051715])] ! parsing: GO:0051727 ! No parse for: GO:0051727 cell cycle switching, meiotic to mitotic cell cycle ! parsing: GO:0051728 ! No parse for: GO:0051728 cell cycle switching, mitotic to meiotic cell cycle ! parsing: GO:0051758 ! No parse for: GO:0051758 homologous chromosome movement towards spindle pole during meiosis I ! parsing: GO:0051770 ! Already have xp for: GO:0051770 positive regulation of nitric-oxide synthase biosynthetic process ! CURRENT : positive regulation of biological process that regulates nitric-oxide synthase biosynthetic process [cdef(GO:0048518, [regulates=GO:0051767])] ! parsing: GO:0051773 ! Already have xp for: GO:0051773 positive regulation of nitric-oxide synthase 2 biosynthetic process ! CURRENT : positive regulation of biological process that regulates nitric-oxide synthase 2 biosynthetic process [cdef(GO:0048518, [regulates=GO:0051768])] ! parsing: GO:0051781 ! Already have xp for: GO:0051781 positive regulation of cell division ! CURRENT : positive regulation of biological process that regulates cell division [cdef(GO:0048518, [regulates=GO:0051301])] ! parsing: GO:0051785 ! Already have xp for: GO:0051785 positive regulation of nuclear division ! CURRENT : positive regulation of biological process that regulates nuclear division [cdef(GO:0048518, [regulates=GO:0000280])] ! parsing: GO:0051795 ! Already have xp for: GO:0051795 positive regulation of catagen ! CURRENT : positive regulation of biological process that regulates catagen [cdef(GO:0048518, [regulates=GO:0042637])] ! parsing: GO:0051798 ! Already have xp for: GO:0051798 positive regulation of hair follicle development ! CURRENT : positive regulation of biological process that regulates hair follicle development [cdef(GO:0048518, [regulates=GO:0001942])] ! parsing: GO:0051804 ! Already have xp for: GO:0051804 positive regulation of cytolysis of cells in other organism during symbiotic interaction ! CURRENT : positive regulation of biological process that regulates cytolysis of cells in other organism during symbiotic interaction [cdef(GO:0048518, [regulates=GO:0051801])] ! parsing: GO:0051808 ! No parse for: GO:0051808 translocation of peptides or proteins into other organism during symbiotic interaction ! parsing: GO:0051835 ! No parse for: GO:0051835 positive regulation of synapse structural plasticity ! parsing: GO:0051836 ! No parse for: GO:0051836 translocation of molecules into other organism during symbiotic interaction ! parsing: GO:0051837 ! No parse for: GO:0051837 translocation of DNA into other organism during symbiotic interaction ! parsing: GO:0051841 ! No parse for: GO:0051841 positive regulation by host of cytolysis of symbiont cells ! parsing: GO:0051844 ! No parse for: GO:0051844 translocation of peptides or proteins into symbiont ! parsing: GO:0051862 ! No parse for: GO:0051862 translocation of molecules into symbiont ! parsing: GO:0051866 ! No parse for: GO:0051866 general adaptation syndrome ! parsing: GO:0051867 ! No parse for: GO:0051867 general adaptation syndrome, behavioral process ! parsing: GO:0051885 ! Already have xp for: GO:0051885 positive regulation of anagen ! CURRENT : positive regulation of biological process that regulates anagen [cdef(GO:0048518, [regulates=GO:0042640])] ! parsing: GO:0051888 ! Already have xp for: GO:0051888 positive regulation of exogen ! CURRENT : positive regulation of biological process that regulates exogen [cdef(GO:0048518, [regulates=GO:0042638])] ! parsing: GO:0051891 ! Already have xp for: GO:0051891 positive regulation of cardioblast differentiation ! CURRENT : positive regulation of biological process that regulates cardioblast differentiation [cdef(GO:0048518, [regulates=GO:0010002])] ! parsing: GO:0051894 ! Already have xp for: GO:0051894 positive regulation of focal adhesion formation ! CURRENT : positive regulation of biological process that regulates focal adhesion formation [cdef(GO:0048518, [regulates=GO:0048041])] ! parsing: GO:0051897 ! Already have xp for: GO:0051897 positive regulation of protein kinase B signaling cascade ! CURRENT : positive regulation of biological process that regulates protein kinase B signaling cascade [cdef(GO:0048518, [regulates=GO:0043491])] ! parsing: GO:0051901 ! Already have xp for: GO:0051901 positive regulation of mitochondrial depolarization ! CURRENT : positive regulation of biological process that regulates mitochondrial depolarization [cdef(GO:0048518, [regulates=GO:0051882])] ! parsing: GO:0051914 ! parse: GO:0051914 using "positive regulation of synaptic plasticity by chemical substance" => cdef(GO:0031915, [OBO_REL:mediated_by=CHEBI:24431]) [-2] ! parse: GO:0051914 using "up regulation of synaptic plasticity by chemical substance" => cdef(GO:0031915, [OBO_REL:mediated_by=CHEBI:24431]) [-2] ! parse: GO:0051914 using "up-regulation of synaptic plasticity by chemical substance" => cdef(GO:0031915, [OBO_REL:mediated_by=CHEBI:24431]) [-2] ! parse: GO:0051914 using "upregulation of synaptic plasticity by chemical substance" => cdef(GO:0031915, [OBO_REL:mediated_by=CHEBI:24431]) [-2] ! no existing xp def ! def: "The process by which a chemical substance increases synaptic plasticity, the ability of synapses to change as circumstances require." ! PROPOSED: positive regulation of synaptic plasticity that OBO_REL:mediated_by molecular structure [cdef(GO:0031915, [OBO_REL:mediated_by=CHEBI:24431])] [Term] id: GO:0051914 ! positive regulation of synaptic plasticity by chemical substance intersection_of: GO:0031915 ! positive regulation of synaptic plasticity intersection_of: OBO_REL:mediated_by CHEBI:24431 ! molecular structure synonym: "molecular structure mediated positive regulation of synaptic plasticity" EXACT [OBOL:automatic] synonym: "molecular structure mediated up regulation of synaptic plasticity" EXACT [OBOL:automatic] synonym: "molecular structure mediated up-regulation of synaptic plasticity" EXACT [OBOL:automatic] synonym: "molecular structure mediated upregulation of synaptic plasticity" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051914: 6.18 ! parsing: GO:0051919 ! Already have xp for: GO:0051919 positive regulation of fibrinolysis ! CURRENT : positive regulation of biological process that regulates fibrinolysis [cdef(GO:0048518, [regulates=GO:0042730])] ! parsing: GO:0051928 ! Already have xp for: GO:0051928 positive regulation of calcium ion transport ! CURRENT : positive regulation of biological process that regulates calcium ion transport [cdef(GO:0048518, [regulates=GO:0006816])] ! parsing: GO:0051929 ! No parse for: GO:0051929 positive regulation of calcium ion transport via voltage-gated calcium channel ! parsing: GO:0051933 ! parse: GO:0051933 using "amino acid neurotransmitter reuptake" => cdef(GO:0001504, [OBO_REL:results_in_transport_of=CHEBI:33709]) [-2] ! parse: GO:0051933 using "amino acid neurotransmitter reuptake" => cdef(GO:0001504, [OBO_REL:results_in_transport_of=SO:0001237]) [-2] ! no existing xp def ! def: "The uptake of amino acid neurotransmitters by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters." ! PROPOSED: neurotransmitter uptake that OBO_REL:results_in_transport_of amino_acid [cdef(GO:0001504, [OBO_REL:results_in_transport_of=SO:0001237])] [Term] id: GO:0051933 ! amino acid uptake during transmission of nerve impulse intersection_of: GO:0001504 ! neurotransmitter uptake intersection_of: OBO_REL:results_in_transport_of SO:0001237 ! amino_acid ! seconds spent parsing GO:0051933: 11.99 ! parsing: GO:0051943 ! Already have xp for: GO:0051943 positive regulation of amino acid uptake during transmission of nerve impulse ! CURRENT : positive regulation of biological process that regulates amino acid uptake during transmission of nerve impulse [cdef(GO:0048518, [regulates=GO:0051933])] ! parsing: GO:0051944 ! Already have xp for: GO:0051944 positive regulation of catecholamine uptake during transmission of nerve impulse ! CURRENT : positive regulation of biological process that regulates catecholamine uptake during transmission of nerve impulse [cdef(GO:0048518, [regulates=GO:0051934])] ! parsing: GO:0051950 ! Already have xp for: GO:0051950 positive regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse ! CURRENT : positive regulation of biological process that regulates gamma-aminobutyric acid uptake during transmission of nerve impulse [cdef(GO:0048518, [regulates=GO:0051936])] ! parsing: GO:0051951 ! Already have xp for: GO:0051951 positive regulation of glutamate uptake during transmission of nerve impulse ! CURRENT : positive regulation of biological process that regulates glutamate uptake during transmission of nerve impulse [cdef(GO:0048518, [regulates=GO:0051935])] ! parsing: GO:0051954 ! Already have xp for: GO:0051954 positive regulation of amine transport ! CURRENT : positive regulation of biological process that regulates amine transport [cdef(GO:0048518, [regulates=GO:0015837])] ! parsing: GO:0051957 ! Already have xp for: GO:0051957 positive regulation of amino acid transport ! CURRENT : positive regulation of biological process that regulates amino acid transport [cdef(GO:0048518, [regulates=GO:0006865])] ! parsing: GO:0051962 ! Already have xp for: GO:0051962 positive regulation of nervous system development ! CURRENT : positive regulation of biological process that regulates nervous system development [cdef(GO:0048518, [regulates=GO:0007399])] ! parsing: GO:0051965 ! Already have xp for: GO:0051965 positive regulation of synaptogenesis ! CURRENT : positive regulation of biological process that regulates synaptogenesis [cdef(GO:0048518, [regulates=GO:0007416])] ! parsing: GO:0051968 ! No parse for: GO:0051968 positive regulation of synaptic transmission, glutamatergic ! parsing: GO:0051971 ! Already have xp for: GO:0051971 positive regulation of transmission of nerve impulse ! CURRENT : positive regulation of biological process that regulates transmission of nerve impulse [cdef(GO:0048518, [regulates=GO:0019226])] ! parsing: GO:0051972 ! No parse for: GO:0051972 regulation of telomerase activity ! parsing: GO:0051973 ! No parse for: GO:0051973 positive regulation of telomerase activity ! parsing: GO:0051974 ! No parse for: GO:0051974 negative regulation of telomerase activity ! parsing: GO:0051984 ! Already have xp for: GO:0051984 positive regulation of chromosome segregation ! CURRENT : positive regulation of biological process that regulates chromosome segregation [cdef(GO:0048518, [regulates=GO:0007059])] ! parsing: GO:0051987 ! Already have xp for: GO:0051987 positive regulation of attachment of spindle microtubules to kinetochore ! CURRENT : positive regulation of biological process that regulates attachment of spindle microtubules to kinetochore [cdef(GO:0048518, [regulates=GO:0008608])] ! parsing: GO:0052024 ! No parse for: GO:0052024 positive regulation by symbiont of hormone or growth regulator levels in host ! parsing: GO:0052028 ! No parse for: GO:0052028 positive regulation by symbiont of host signal transduction pathway ! parsing: GO:0052033 ! No parse for: GO:0052033 pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity ! parsing: GO:0052035 ! No parse for: GO:0052035 positive regulation by symbiont of host inflammatory response ! parsing: GO:0052042 ! No parse for: GO:0052042 positive regulation by symbiont of host programmed cell death ! parsing: GO:0052045 ! parse: GO:0052045 using "enhancement of host programmed cell death by organism" => cdef(GO:0052042, [OBO_REL:mediated_by=UBO:0000032]) [-2] ! parse: GO:0052045 using "enhancement of host programmed cell death by organism" => cdef(GO:0052042, [OBO_REL:mediated_by=obol:organism]) [-2] ! no existing xp def ! def: "Any process by which an organism increases the frequency, rate or extent of programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." ! PROPOSED: positive regulation by symbiont of host programmed cell death that OBO_REL:mediated_by organism [cdef(GO:0052042, [OBO_REL:mediated_by=obol:organism])] [Term] id: GO:0052045 ! upregulation by symbiont of host programmed cell death intersection_of: GO:0052042 ! positive regulation by symbiont of host programmed cell death intersection_of: OBO_REL:mediated_by obol:organism ! organism ! seconds spent parsing GO:0052045: 2.87 ! parsing: GO:0052065 ! No parse for: GO:0052065 positive regulation by organism of defense-related calcium ion flux in other organism during symbiotic interaction ! parsing: GO:0052071 ! No parse for: GO:0052071 positive regulation by symbiont of defense-related host ethylene-mediated signal transduction pathway ! parsing: GO:0052072 ! No parse for: GO:0052072 positive regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway ! parsing: GO:0052073 ! No parse for: GO:0052073 positive regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway ! parsing: GO:0052074 ! No parse for: GO:0052074 positive regulation by symbiont of host salicylic acid-mediated defense response ! parsing: GO:0052075 ! No parse for: GO:0052075 positive regulation by symbiont of host jasmonic acid-mediated defense response ! parsing: GO:0052076 ! No parse for: GO:0052076 positive regulation by symbiont of host ethylene-mediated defense response ! parsing: GO:0052079 ! No parse for: GO:0052079 positive regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway ! parsing: GO:0052092 ! No parse for: GO:0052092 positive regulation by symbiont of nutrient release from host ! parsing: GO:0052102 ! No parse for: GO:0052102 positive regulation by symbiont of defense-related host calcium-dependent protein kinase pathway ! parsing: GO:0052107 ! No parse for: GO:0052107 positive regulation by symbiont of defense-related host callose deposition ! parsing: GO:0052109 ! No parse for: GO:0052109 positive regulation by symbiont of defense-related host cell wall callose deposition ! parsing: GO:0052118 ! No parse for: GO:0052118 positive energy taxis in host environment ! parsing: GO:0052120 ! No parse for: GO:0052120 positive aerotaxis in host environment ! parsing: GO:0052121 ! No parse for: GO:0052121 positive chemotaxis in host environment ! parsing: GO:0052128 ! No parse for: GO:0052128 positive energy taxis ! parsing: GO:0052131 ! No parse for: GO:0052131 positive aerotaxis ! parsing: GO:0052132 ! No parse for: GO:0052132 positive aerotaxis on or near host ! parsing: GO:0052133 ! No parse for: GO:0052133 positive aerotaxis within host ! parsing: GO:0052140 ! No parse for: GO:0052140 positive chemotaxis within host ! parsing: GO:0052141 ! No parse for: GO:0052141 positive chemotaxis on or near host ! parsing: GO:0052146 ! No parse for: GO:0052146 positive energy taxis on or near host ! parsing: GO:0052147 ! No parse for: GO:0052147 positive energy taxis within host ! parsing: GO:0052151 ! No parse for: GO:0052151 positive regulation by symbiont of host apoptosis ! parsing: GO:0052153 ! No parse for: GO:0052153 positive regulation by symbiont of host non-apoptotic programmed cell death ! parsing: GO:0052166 ! No parse for: GO:0052166 positive regulation by symbiont of host innate immunity ! parsing: GO:0052191 ! No parse for: GO:0052191 positive regulation by symbiont of host phagocytosis ! parsing: GO:0052197 ! No parse for: GO:0052197 positive regulation by host of symbiont defense response ! parsing: GO:0052218 ! No parse for: GO:0052218 positive energy taxis in environment of other organism during symbiotic interaction ! parsing: GO:0052220 ! No parse for: GO:0052220 positive aerotaxis in environment of other organism during symbiotic interaction ! parsing: GO:0052221 ! No parse for: GO:0052221 positive chemotaxis in environment of other organism during symbiotic interaction ! parsing: GO:0052232 ! No parse for: GO:0052232 positive aerotaxis on or near other organism during symbiotic interaction ! parsing: GO:0052233 ! No parse for: GO:0052233 positive aerotaxis within other organism during symbiotic interaction ! parsing: GO:0052240 ! No parse for: GO:0052240 positive chemotaxis within other organism during symbiotic interaction ! parsing: GO:0052241 ! No parse for: GO:0052241 positive chemotaxis on or near other organism during symbiotic interaction ! parsing: GO:0052246 ! No parse for: GO:0052246 positive energy taxis on or near other organism during symbiotic interaction ! parsing: GO:0052247 ! No parse for: GO:0052247 positive energy taxis within other organism during symbiotic interaction ! parsing: GO:0052257 ! No parse for: GO:0052257 pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism during symbiotic interaction ! parsing: GO:0052259 ! No parse for: GO:0052259 positive regulation by organism of inflammatory response of other organism during symbiotic interaction ! parsing: GO:0052269 ! No parse for: GO:0052269 positive regulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism during symbiotic interaction ! parsing: GO:0052270 ! No parse for: GO:0052270 positive regulation by organism of defense-related salicylic acid-mediated signal transduction pathway in other organism during symbiotic interaction ! parsing: GO:0052271 ! No parse for: GO:0052271 positive regulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism during symbiotic interaction ! parsing: GO:0052272 ! No parse for: GO:0052272 positive regulation by organism of salicylic acid-mediated defense response of other organism during symbiotic interaction ! parsing: GO:0052273 ! No parse for: GO:0052273 positive regulation by organism of jasmonic acid-mediated defense response of other organism during symbiotic interaction ! parsing: GO:0052274 ! No parse for: GO:0052274 positive regulation by organism of ethylene-mediated defense response of other organism during symbiotic interaction ! parsing: GO:0052276 ! No parse for: GO:0052276 positive regulation by organism of defense-related MAP kinase-mediated signal transduction pathway in other organism during symbiotic interaction ! parsing: GO:0052287 ! No parse for: GO:0052287 positive regulation by organism of defense-related calcium-dependent protein kinase pathway in other organism during symbiotic interaction ! parsing: GO:0052291 ! No parse for: GO:0052291 positive regulation by organism of defense-related callose deposition in other organism during symbiotic interaction ! parsing: GO:0052292 ! No parse for: GO:0052292 positive regulation by organism of defense-related cell wall callose deposition in other organism during symbiotic interaction ! parsing: GO:0052305 ! No parse for: GO:0052305 positive regulation by organism of innate immunity in other organism during symbiotic interaction ! parsing: GO:0052320 ! Already have xp for: GO:0052320 positive regulation of phytoalexin metabolic process ! CURRENT : positive regulation of biological process that regulates phytoalexin metabolic process [cdef(GO:0048518, [regulates=GO:0052314])] ! parsing: GO:0052322 ! Already have xp for: GO:0052322 positive regulation of phytoalexin biosynthetic process ! CURRENT : positive regulation of biological process that regulates phytoalexin biosynthetic process [cdef(GO:0048518, [regulates=GO:0052315])] ! parsing: GO:0052329 ! No parse for: GO:0052329 positive regulation by organism of phytoalexin production in other organism during symbiotic interaction ! parsing: GO:0052330 ! No parse for: GO:0052330 positive regulation by organism of programmed cell death in other organism during symbiotic interaction ! parsing: GO:0052344 ! No parse for: GO:0052344 positive regulation by symbiont of host phytoalexin production ! parsing: GO:0052345 ! No parse for: GO:0052345 positive regulation by organism of defense-related nitric oxide production in other organism during symbiotic interaction ! parsing: GO:0052347 ! No parse for: GO:0052347 positive regulation by symbiont of defense-related host nitric oxide production ! parsing: GO:0052348 ! No parse for: GO:0052348 positive regulation by organism of defense-related reactive oxygen species production in other organism during symbiotic interaction ! parsing: GO:0052369 ! No parse for: GO:0052369 positive regulation by symbiont of defense-related host reactive oxygen species production ! parsing: GO:0052389 ! No parse for: GO:0052389 positive regulation by symbiont of defense-related host calcium ion flux ! parsing: GO:0052423 ! No parse for: GO:0052423 positive regulation by organism of resistance gene-dependent defense response of other organism during symbiotic interaction ! parsing: GO:0052501 ! No parse for: GO:0052501 positive regulation by organism of apoptosis in other organism during symbiotic interaction ! parsing: GO:0052502 ! No parse for: GO:0052502 positive regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway ! parsing: GO:0052509 ! No parse for: GO:0052509 positive regulation by symbiont of host defense response ! parsing: GO:0052510 ! No parse for: GO:0052510 positive regulation by organism of defense response of other organism during symbiotic interaction ! parsing: GO:0052513 ! No parse for: GO:0052513 positive regulation by organism of hormone or growth regulator levels in other organism during symbiotic interaction ! parsing: GO:0052518 ! No parse for: GO:0052518 positive regulation by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction ! parsing: GO:0052519 ! No parse for: GO:0052519 positive regulation by host of nutrient release from symbiont ! parsing: GO:0052520 ! No parse for: GO:0052520 positive regulation by organism of nutrient release from other organism during symbiotic interaction ! parsing: GO:0052521 ! No parse for: GO:0052521 positive regulation by host of symbiont phagocytosis ! parsing: GO:0052522 ! No parse for: GO:0052522 positive regulation by organism of phagocytosis in other organism during symbiotic interaction ! parsing: GO:0052525 ! No parse for: GO:0052525 positive regulation by host of symbiont signal transduction pathway ! parsing: GO:0052526 ! No parse for: GO:0052526 positive regulation by organism of signal transduction pathway in other organism during symbiotic interaction ! parsing: GO:0052527 ! No parse for: GO:0052527 positive regulation by symbiont of host resistance gene-dependent defense response ! parsing: GO:0052529 ! No parse for: GO:0052529 upregulation by organism of programmed cell death in other organism during symbiotic interaction ! parsing: GO:0052532 ! No parse for: GO:0052532 positive regulation by organism of induced systemic resistance in other organism during symbiotic interaction ! parsing: GO:0052533 ! No parse for: GO:0052533 positive regulation by symbiont of induced systemic resistance in host ! parsing: GO:0052535 ! No parse for: GO:0052535 positive regulation by organism of systemic acquired resistance in other organism during symbiotic interaction ! parsing: GO:0052537 ! No parse for: GO:0052537 positive regulation by symbiont of systemic acquired resistance in host ! parsing: GO:0052538 ! No parse for: GO:0052538 positive regulation by organism of defense-related cell wall thickening in other organism during symbiotic interaction ! parsing: GO:0052539 ! No parse for: GO:0052539 positive regulation by symbiont of defense-related host cell wall thickening ! parsing: GO:0052547 ! No parse for: GO:0052547 regulation of peptidase activity ! parsing: GO:0052555 ! No parse for: GO:0052555 positive regulation by organism of immune response of other organism during symbiotic interaction ! parsing: GO:0052556 ! No parse for: GO:0052556 positive regulation by symbiont of host immune response ! parsing: GO:0055020 ! Already have xp for: GO:0055020 positive regulation of cardiac muscle fiber development ! CURRENT : positive regulation of biological process that regulates cardiac muscle fiber development [cdef(GO:0048518, [regulates=GO:0048739])] ! parsing: GO:0055023 ! Already have xp for: GO:0055023 positive regulation of cardiac muscle growth ! CURRENT : positive regulation of biological process that regulates cardiac muscle growth [cdef(GO:0048518, [regulates=GO:0055017])] ! parsing: GO:0055025 ! Already have xp for: GO:0055025 positive regulation of cardiac muscle development ! CURRENT : positive regulation of biological process that regulates cardiac muscle development [cdef(GO:0048518, [regulates=GO:0048738])] ! parsing: GO:0055047 ! No parse for: GO:0055047 generative cell mitosis ! parsing: GO:0055065 ! parse: GO:0055065 using "metal ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:33521]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of metal ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of metal [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:33521])] [Term] id: GO:0055065 ! metal ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:33521 ! metal synonym: "metals ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055065: 3.44 ! parsing: GO:0055076 ! parse: GO:0055076 using "transition metal ion homeostasis" => cdef(GO:0055065, [OBO_REL:regulates_levels_of=SO:1000009]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of transition metal ions. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver." ! PROPOSED: metal ion homeostasis that OBO_REL:regulates_levels_of transition [cdef(GO:0055065, [OBO_REL:regulates_levels_of=SO:1000009])] [Term] id: GO:0055076 ! transition metal ion homeostasis intersection_of: GO:0055065 ! metal ion homeostasis intersection_of: OBO_REL:regulates_levels_of SO:1000009 ! transition ! seconds spent parsing GO:0055076: 3.66 ! parsing: GO:0055085 ! parse: GO:0055085 using "transmembrane transport" => cdef(GO:0006810, [OBO_REL:results_in_transport_of=GO:0016021]) [-2] ! no existing xp def ! def: "The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute." ! PROPOSED: transport that OBO_REL:results_in_transport_of integral to membrane [cdef(GO:0006810, [OBO_REL:results_in_transport_of=GO:0016021])] [Term] id: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport intersection_of: OBO_REL:results_in_transport_of GO:0016021 ! integral to membrane synonym: "integral to membrane transport" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055085: 1.93 ! parsing: GO:0060045 ! Already have xp for: GO:0060045 positive regulation of cardiac muscle cell proliferation ! CURRENT : positive regulation of biological process that regulates cardiac muscle cell proliferation [cdef(GO:0048518, [regulates=GO:0060038])] ! parsing: GO:0060050 ! Already have xp for: GO:0060050 positive regulation of protein amino acid glycosylation ! CURRENT : positive regulation of biological process that regulates protein amino acid glycosylation [cdef(GO:0048518, [regulates=GO:0006486])] ! parsing: GO:0060054 ! No parse for: GO:0060054 positive regulation of epithelial cell proliferation involved in wound healing ! parsing: GO:0060058 ! No parse for: GO:0060058 positive regulation of apoptosis involved in mammary gland involution ! parsing: GO:0060094 ! No parse for: GO:0060094 positive regulation of synaptic transmission, glycinergic ! parsing: GO:0060100 ! No parse for: GO:0060100 positive regulation of phagocytosis, engulfment ! parsing: GO:0060112 ! No parse for: GO:0060112 generation of ovulation cycle rhythm ! parsing: GO:0060124 ! Already have xp for: GO:0060124 positive regulation of growth hormone secretion ! CURRENT : positive regulation of biological process that regulates growth hormone secretion [cdef(GO:0048518, [regulates=GO:0030252])] ! parsing: GO:0060139 ! No parse for: GO:0060139 positive regulation of apoptosis by virus ! parsing: GO:0060141 ! No parse for: GO:0060141 positive regulation of syncitium formation by virus ! parsing: GO:0060143 ! No parse for: GO:0060143 positive regulation of syncytium formation by plasma membrane fusion ! parsing: GO:0060148 ! No parse for: GO:0060148 positive regulation of posttranscriptional gene silencing ! parsing: GO:0060161 ! No parse for: GO:0060161 positive regulation of dopamine receptor signaling pathway ! parsing: GO:0060168 ! No parse for: GO:0060168 positive regulation of adenosine receptor signaling pathway ! parsing: GO:0060189 ! No parse for: GO:0060189 positive regulation of protein desumoylation ! parsing: GO:0060193 ! No parse for: GO:0060193 positive regulation of lipase activity ! parsing: GO:0060196 ! No parse for: GO:0060196 positive regulation of antisense RNA transcription ! parsing: GO:0060213 ! No parse for: GO:0060213 positive regulation of poly(A) tail shortening ! parsing: GO:0060225 ! No parse for: GO:0060225 positive regulation of retinal rod cell fate commitment ! anonymous primitive or inner classes created as by-products: [Term] id: _:cdef__GO_0009058_____OBO_REL_results_in_formation_of___CHEBI_25909___ intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of CHEBI:25909 ! peptidyl-1-thioglycine [Term] id: _:cdef__GO_0009058_____OBO_REL_results_in_formation_of___CHEBI_25920___ intersection_of: GO:0009058 ! biosynthetic process intersection_of: OBO_REL:results_in_formation_of CHEBI:25920 ! peptidyl-glycine cholesteryl ester [Term] id: _:cdef__GO_0051179_____OBO_REL_results_in_localization_of___SO_0000358___ intersection_of: GO:0051179 ! localization intersection_of: OBO_REL:results_in_localization_of SO:0000358 ! protein [Term] id: _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000253___ intersection_of: SO:0000001 ! region intersection_of: OBO_REL:part_of SO:0000253 ! tRNA [Term] id: _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000275___ intersection_of: SO:0000001 ! region intersection_of: OBO_REL:part_of SO:0000275 ! snoRNA [Term] id: _:cdef__SO_0000001_____OBO_REL_part_of___SO_0000356___ intersection_of: SO:0000001 ! region intersection_of: OBO_REL:part_of SO:0000356 ! RNA [Term] id: _:wobble_4_aminopyrimidin_2__1_H___one intersection_of: SO:0001015 ! wobble_base_pair intersection_of: OBO_REL:connected_to CHEBI:16040 ! cytosine synonym: "wobble 4-aminopyrimidin-2 (1 H) -one" EXACT [OBOL:automatic] synonym: "wobble Cytosine" EXACT [OBOL:automatic] [Term] id: _:wobble_2_amino_1___9_dihydro_6_H_purin_6_one intersection_of: SO:0001015 ! wobble_base_pair intersection_of: OBO_REL:connected_to CHEBI:16235 ! guanine synonym: "wobble 2-amino-1, 9-dihydro-6 H-purin-6-one" EXACT [OBOL:automatic] synonym: "wobble GUANINE" EXACT [OBOL:automatic] synonym: "wobble Guanine" EXACT [OBOL:automatic] [Term] id: _:wobble_ADENOSINE intersection_of: SO:0001015 ! wobble_base_pair intersection_of: OBO_REL:connected_to CHEBI:16335 ! adenosine synonym: "wobble ADENOSINE" EXACT [OBOL:automatic] synonym: "wobble Adenosine" EXACT [OBOL:automatic] [Term] id: _:wobble_URIDINE intersection_of: SO:0001015 ! wobble_base_pair intersection_of: OBO_REL:connected_to CHEBI:16704 ! uridine synonym: "wobble URIDINE" EXACT [OBOL:automatic] synonym: "wobble Uridine" EXACT [OBOL:automatic] [Term] id: _:cdef__SO_0001015_____OBO_REL_part_of___SO_0000253___ intersection_of: SO:0001015 ! wobble_base_pair intersection_of: OBO_REL:part_of SO:0000253 ! tRNA [Term] id: _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16040_______OBO_REL_part_of___SO_0000253___ intersection_of: _:wobble_4_aminopyrimidin_2__1_H___one intersection_of: OBO_REL:part_of SO:0000253 ! tRNA [Term] id: _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16235_______OBO_REL_part_of___SO_0000253___ intersection_of: _:wobble_2_amino_1___9_dihydro_6_H_purin_6_one intersection_of: OBO_REL:part_of SO:0000253 ! tRNA [Term] id: _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16335_______OBO_REL_part_of___SO_0000253___ intersection_of: _:wobble_ADENOSINE intersection_of: OBO_REL:part_of SO:0000253 ! tRNA [Term] id: _:cdef_cdef__SO_0001015_____OBO_REL_connected_to___CHEBI_16704_______OBO_REL_part_of___SO_0000253___ intersection_of: _:wobble_URIDINE intersection_of: OBO_REL:part_of SO:0000253 ! tRNA