------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43359) +++ go_inferences.obo (working copy) @@ -82422,6 +82422,7 @@ [Term] id: GO:1904211 ! membrane protein proteolysis involved in retrograde protein transport, ER to cytosol is_a: GO:0033619 {is_inferred="true"} ! membrane protein proteolysis +is_a: GO:0051603 {is_inferred="true"} ! proteolysis involved in cellular protein catabolic process [Term] id: GO:1904212 ! regulation of iodide transmembrane transport @@ -82812,18 +82813,18 @@ [Term] id: GO:1904292 ! regulation of ERAD pathway -is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process +is_a: GO:0061136 {is_inferred="true"} ! regulation of proteasomal protein catabolic process is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:1904293 ! negative regulation of ERAD pathway -is_a: GO:0042177 {is_inferred="true"} ! negative regulation of protein catabolic process +is_a: GO:1901799 {is_inferred="true"} ! negative regulation of proteasomal protein catabolic process is_a: GO:1903573 {is_inferred="true"} ! negative regulation of response to endoplasmic reticulum stress is_a: GO:1904292 {is_inferred="true"} ! regulation of ERAD pathway [Term] id: GO:1904294 ! positive regulation of ERAD pathway -is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process +is_a: GO:1901800 {is_inferred="true"} ! positive regulation of proteasomal protein catabolic process is_a: GO:1904292 {is_inferred="true"} ! regulation of ERAD pathway is_a: GO:1905898 {is_inferred="true"} ! positive regulation of response to endoplasmic reticulum stress ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43243) +++ go_inferences.obo (working copy) @@ -11780,17 +11780,17 @@ is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process [Term] -id: GO:0010506 ! regulation of autophagy +id: GO:0010506 ! regulation of catabolic autophagy is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process [Term] -id: GO:0010507 ! negative regulation of autophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +id: GO:0010507 ! negative regulation of catabolic autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process [Term] -id: GO:0010508 ! positive regulation of autophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +id: GO:0010508 ! positive regulation of catabolic autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process [Term] @@ -16573,7 +16573,7 @@ [Term] id: GO:0016239 ! positive regulation of macroautophagy -is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of catabolic autophagy is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy [Term] @@ -16582,11 +16582,11 @@ [Term] id: GO:0016241 ! regulation of macroautophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy [Term] id: GO:0016242 ! negative regulation of macroautophagy -is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0010507 {is_inferred="true"} ! negative regulation of catabolic autophagy is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy [Term] @@ -27800,7 +27800,7 @@ [Term] id: GO:0034263 ! positive regulation of autophagy in response to ER overload is_a: GO:0006983 {is_inferred="true"} ! ER overload response -is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of catabolic autophagy [Term] id: GO:0034264 ! isopentenyl adenine metabolic process @@ -55222,7 +55222,7 @@ [Term] id: GO:0075071 ! autophagy involved in symbiotic interaction -is_a: GO:0006914 {is_inferred="true"} ! autophagy +is_a: GO:0006914 {is_inferred="true"} ! catabolic autophagy [Term] id: GO:0075075 ! modulation by host of symbiont adenylate cyclase activity @@ -77452,12 +77452,12 @@ [Term] id: GO:1903146 ! regulation of mitophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1903147 ! negative regulation of mitophagy -is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0010507 {is_inferred="true"} ! negative regulation of catabolic autophagy is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903146 {is_inferred="true"} ! regulation of mitophagy @@ -79535,7 +79535,7 @@ [Term] id: GO:1903599 ! positive regulation of mitophagy -is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of catabolic autophagy is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903146 {is_inferred="true"} ! regulation of mitophagy @@ -81672,13 +81672,13 @@ [Term] id: GO:1904051 ! regulation of protein targeting to vacuole involved in autophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting [Term] id: GO:1904052 ! negative regulation of protein targeting to vacuole involved in autophagy -is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0010507 {is_inferred="true"} ! negative regulation of catabolic autophagy is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport is_a: GO:1903336 {is_inferred="true"} ! negative regulation of vacuolar transport is_a: GO:1904051 {is_inferred="true"} ! regulation of protein targeting to vacuole involved in autophagy @@ -81685,7 +81685,7 @@ [Term] id: GO:1904053 ! positive regulation of protein targeting to vacuole involved in autophagy -is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of catabolic autophagy is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport is_a: GO:1904051 {is_inferred="true"} ! regulation of protein targeting to vacuole involved in autophagy @@ -84883,13 +84883,13 @@ [Term] id: GO:1904714 ! regulation of chaperone-mediated autophagy -is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0010506 {is_inferred="true"} ! regulation of catabolic autophagy is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process [Term] id: GO:1904715 ! negative regulation of chaperone-mediated autophagy -is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0010507 {is_inferred="true"} ! negative regulation of catabolic autophagy is_a: GO:0034249 {is_inferred="true"} ! negative regulation of cellular amide metabolic process is_a: GO:0042177 {is_inferred="true"} ! negative regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy @@ -84896,7 +84896,7 @@ [Term] id: GO:1904716 ! positive regulation of chaperone-mediated autophagy -is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of catabolic autophagy is_a: GO:0034250 {is_inferred="true"} ! positive regulation of cellular amide metabolic process is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy @@ -97539,7 +97539,8 @@ is_a: GO:2001156 {is_inferred="true"} ! regulation of proline catabolic process to glutamate [Term] -id: GO:2001159 ! regulation of CVT pathway +id: GO:2001159 ! regulation of Cvt pathway +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43217) +++ go_inferences.obo (working copy) @@ -60896,8 +60896,8 @@ is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] -id: GO:0099614 ! protein targeting to spore cell wall -is_a: GO:0099613 {is_inferred="true"} ! protein targeting to cell wall +id: GO:0099614 ! protein localization to spore cell wall +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0099616 ! extrinsic component of matrix side of mitochondrial inner membrane @@ -85571,7 +85571,7 @@ [Term] id: GO:1904853 ! protein localization to ascospore wall -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery +is_a: GO:0099614 {is_inferred="true"} ! protein localization to spore cell wall [Term] id: GO:1904854 ! proteasome core complex binding ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43214) +++ go_inferences.obo (working copy) @@ -1424,6 +1424,10 @@ is_a: GO:0098988 {is_inferred="true"} ! G-protein coupled glutamate receptor activity [Term] +id: GO:0001646 ! cAMP receptor activity +is_a: GO:0004930 {is_inferred="true"} ! G-protein coupled receptor activity + +[Term] id: GO:0001657 ! ureteric bud development is_a: GO:0072164 {is_inferred="true"} ! mesonephric tubule development ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43207) +++ go_inferences.obo (working copy) @@ -8067,6 +8067,11 @@ is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division [Term] +id: GO:0007097 ! nuclear migration +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization + +[Term] id: GO:0007098 ! centrosome cycle is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization @@ -8286,7 +8291,7 @@ [Term] id: GO:0007312 ! oocyte nucleus migration involved in oocyte dorsal/ventral axis specification is_a: GO:0007097 {is_inferred="true"} ! nuclear migration -is_a: GO:0022414 {is_inferred="true"} ! reproductive process +is_a: GO:0051663 {is_inferred="true"} ! oocyte nucleus localization involved in oocyte dorsal/ventral axis specification [Term] id: GO:0007315 ! pole plasm assembly @@ -21276,6 +21281,7 @@ [Term] id: GO:0031022 ! nuclear migration along microfilament +is_a: GO:0007097 {is_inferred="true"} ! nuclear migration is_a: GO:0099515 {is_inferred="true"} ! actin filament-based transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -30798,10 +30804,6 @@ is_a: GO:0051445 {is_inferred="true"} ! regulation of meiotic cell cycle [Term] -id: GO:0040023 ! establishment of nucleus localization -is_a: GO:0051647 {is_inferred="true"} ! nucleus localization - -[Term] id: GO:0040026 ! positive regulation of vulval development is_a: GO:0040028 {is_inferred="true"} ! regulation of vulval development is_a: GO:0061063 {is_inferred="true"} ! positive regulation of nematode larval development @@ -30892,6 +30894,8 @@ [Term] id: GO:0042070 ! maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0051658 {is_inferred="true"} ! maintenance of nucleus location +is_a: GO:0051663 {is_inferred="true"} ! oocyte nucleus localization involved in oocyte dorsal/ventral axis specification [Term] id: GO:0042073 ! intraciliary transport @@ -44713,6 +44717,7 @@ [Term] id: GO:0051663 ! oocyte nucleus localization involved in oocyte dorsal/ventral axis specification is_a: GO:0022414 {is_inferred="true"} ! reproductive process +is_a: GO:0051647 {is_inferred="true"} ! nucleus localization [Term] id: GO:0051667 ! establishment of plastid localization @@ -59590,7 +59595,8 @@ [Term] id: GO:0098863 ! nuclear migration by microtubule mediated pushing forces -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization +is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0098866 ! multivesicular body fusion to apical plasma membrane ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43204) +++ go_inferences.obo (working copy) @@ -33444,10 +33444,6 @@ is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole [Term] -id: GO:0043329 ! protein targeting to membrane involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway -is_a: GO:0006612 {is_inferred="true"} ! protein targeting to membrane - -[Term] id: GO:0043331 ! response to dsRNA is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43195) +++ go_inferences.obo (working copy) @@ -26255,7 +26255,7 @@ is_a: GO:0000076 {is_inferred="true"} ! DNA replication checkpoint [Term] -id: GO:0033315 ! meiotic DNA replication checkpoint +id: GO:0033315 ! meiotic G2/MI DNA replication checkpoint is_a: GO:0000076 {is_inferred="true"} ! DNA replication checkpoint [Term] @@ -35322,6 +35322,7 @@ id: GO:0045128 ! negative regulation of reciprocal meiotic recombination is_a: GO:0010520 {is_inferred="true"} ! regulation of reciprocal meiotic recombination is_a: GO:0045910 {is_inferred="true"} ! negative regulation of DNA recombination +is_a: GO:0110029 {is_inferred="true"} ! negative regulation of meiosis I [Term] id: GO:0045132 ! meiotic chromosome segregation @@ -61514,6 +61515,31 @@ is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process [Term] +id: GO:0110029 ! negative regulation of meiosis I +is_a: GO:0045835 {is_inferred="true"} ! negative regulation of meiotic nuclear division +is_a: GO:0060631 {is_inferred="true"} ! regulation of meiosis I + +[Term] +id: GO:0110030 ! regulation of G2/MI transition of meiotic cell cycle +is_a: GO:0060631 {is_inferred="true"} ! regulation of meiosis I +is_a: GO:1901993 {is_inferred="true"} ! regulation of meiotic cell cycle phase transition +is_a: GO:1902749 {is_inferred="true"} ! regulation of cell cycle G2/M phase transition + +[Term] +id: GO:0110031 ! negative regulation of G2/MI transition of meiotic cell cycle +is_a: GO:0110029 {is_inferred="true"} ! negative regulation of meiosis I +is_a: GO:0110030 {is_inferred="true"} ! regulation of G2/MI transition of meiotic cell cycle +is_a: GO:1901994 {is_inferred="true"} ! negative regulation of meiotic cell cycle phase transition +is_a: GO:1902750 {is_inferred="true"} ! negative regulation of cell cycle G2/M phase transition + +[Term] +id: GO:0110032 ! positive regulation of G2/MI transition of meiotic cell cycle +is_a: GO:0060903 {is_inferred="true"} ! positive regulation of meiosis I +is_a: GO:0110030 {is_inferred="true"} ! regulation of G2/MI transition of meiotic cell cycle +is_a: GO:1901995 {is_inferred="true"} ! positive regulation of meiotic cell cycle phase transition +is_a: GO:1902751 {is_inferred="true"} ! positive regulation of cell cycle G2/M phase transition + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -78278,8 +78304,8 @@ [Term] id: GO:1903342 ! negative regulation of meiotic DNA double-strand break formation is_a: GO:0010605 {is_inferred="true"} ! negative regulation of macromolecule metabolic process -is_a: GO:0045835 {is_inferred="true"} ! negative regulation of meiotic nuclear division is_a: GO:0045934 {is_inferred="true"} ! negative regulation of nucleobase-containing compound metabolic process +is_a: GO:0110029 {is_inferred="true"} ! negative regulation of meiosis I is_a: GO:1903341 {is_inferred="true"} ! regulation of meiotic DNA double-strand break formation [Term] @@ -87179,6 +87205,7 @@ [Term] id: GO:1905187 ! negative regulation of metaphase/anaphase transition of meiosis I +is_a: GO:0110029 {is_inferred="true"} ! negative regulation of meiosis I is_a: GO:1902103 {is_inferred="true"} ! negative regulation of metaphase/anaphase transition of meiotic cell cycle is_a: GO:1905186 {is_inferred="true"} ! regulation of metaphase/anaphase transition of meiosis I ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43190) +++ go_inferences.obo (working copy) @@ -61425,6 +61425,10 @@ is_a: GO:0106023 {is_inferred="true"} ! regulation of pupariation [Term] +id: GO:0106037 ! apicomedial cortex +is_a: GO:0045179 {is_inferred="true"} ! apical cortex + +[Term] id: GO:0110001 ! toxin-antitoxin complex is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43189) +++ go_inferences.obo (working copy) @@ -218,6 +218,10 @@ is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] +id: GO:0000054 ! ribosomal subunit export from nucleus +is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization + +[Term] id: GO:0000055 ! ribosomal large subunit export from nucleus is_a: GO:0000054 {is_inferred="true"} ! ribosomal subunit export from nucleus @@ -27065,11 +27069,6 @@ is_a: GO:0051640 {is_inferred="true"} ! organelle localization [Term] -id: GO:0033753 ! establishment of ribosome localization -is_a: GO:0033750 {is_inferred="true"} ! ribosome localization -is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization - -[Term] id: GO:0033762 ! response to glucagon is_a: GO:0043434 {is_inferred="true"} ! response to peptide hormone ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43178) +++ go_inferences.obo (working copy) @@ -32818,19 +32818,19 @@ id: GO:0042996 ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane +is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane [Term] id: GO:0042997 ! negative regulation of Golgi to plasma membrane protein transport is_a: GO:0042996 {is_inferred="true"} ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051224 {is_inferred="true"} ! negative regulation of protein transport -is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane +is_a: GO:1903077 {is_inferred="true"} ! negative regulation of protein localization to plasma membrane [Term] id: GO:0042998 ! positive regulation of Golgi to plasma membrane protein transport is_a: GO:0042996 {is_inferred="true"} ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051222 {is_inferred="true"} ! positive regulation of protein transport -is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane +is_a: GO:1903078 {is_inferred="true"} ! positive regulation of protein localization to plasma membrane [Term] id: GO:0042999 ! regulation of Golgi to plasma membrane CFTR protein transport @@ -32841,7 +32841,8 @@ is_a: GO:0006893 {is_inferred="true"} ! Golgi to plasma membrane transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane [Term] id: GO:0043002 ! negative regulation of Golgi to plasma membrane CFTR protein transport @@ -54755,10 +54756,6 @@ is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] -id: GO:0072661 ! protein targeting to plasma membrane -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport - -[Term] id: GO:0072662 ! protein localization to peroxisome is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle @@ -54796,10 +54793,6 @@ is_a: GO:1902974 {is_inferred="true"} ! meiotic DNA replication initiation [Term] -id: GO:0072693 ! protein targeting to prospore membrane -is_a: GO:1902658 {is_inferred="true"} ! establishment of protein localization to prospore membrane - -[Term] id: GO:0072697 ! protein localization to cell cortex is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery @@ -56274,27 +56267,6 @@ is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] -id: GO:0090002 ! establishment of protein localization to plasma membrane -is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane - -[Term] -id: GO:0090003 ! regulation of establishment of protein localization to plasma membrane -is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization -is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane - -[Term] -id: GO:0090004 ! positive regulation of establishment of protein localization to plasma membrane -is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane -is_a: GO:1903078 {is_inferred="true"} ! positive regulation of protein localization to plasma membrane -is_a: GO:1904951 {is_inferred="true"} ! positive regulation of establishment of protein localization - -[Term] -id: GO:0090005 ! negative regulation of establishment of protein localization to plasma membrane -is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane -is_a: GO:1903077 {is_inferred="true"} ! negative regulation of protein localization to plasma membrane -is_a: GO:1904950 {is_inferred="true"} ! negative regulation of establishment of protein localization - -[Term] id: GO:0090006 ! regulation of linear element assembly is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis @@ -60979,7 +60951,8 @@ [Term] id: GO:0099638 ! endosome to plasma membrane protein transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1990126 {is_inferred="true"} ! retrograde transport, endosome to plasma membrane @@ -75220,11 +75193,6 @@ is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane [Term] -id: GO:1902658 ! establishment of protein localization to prospore membrane -is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane -is_a: GO:1902657 {is_inferred="true"} ! protein localization to prospore membrane - -[Term] id: GO:1902659 ! regulation of glucose mediated signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process @@ -78799,6 +78767,10 @@ is_a: GO:0090335 {is_inferred="true"} ! regulation of brown fat cell differentiation [Term] +id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane + +[Term] id: GO:1903446 ! geraniol metabolic process is_a: GO:0016093 {is_inferred="true"} ! polyprenol metabolic process is_a: GO:0016098 {is_inferred="true"} ! monoterpenoid metabolic process @@ -89804,18 +89776,18 @@ id: GO:1905749 ! regulation of endosome to plasma membrane protein transport is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane +is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane [Term] id: GO:1905750 ! negative regulation of endosome to plasma membrane protein transport -is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport +is_a: GO:1903077 {is_inferred="true"} ! negative regulation of protein localization to plasma membrane is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport [Term] id: GO:1905751 ! positive regulation of endosome to plasma membrane protein transport -is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport +is_a: GO:1903078 {is_inferred="true"} ! positive regulation of protein localization to plasma membrane is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport [Term] @@ -90917,23 +90889,6 @@ is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] -id: GO:1905963 ! regulation of protein targeting to plasma membrane -is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane -is_a: GO:0090313 {is_inferred="true"} ! regulation of protein targeting to membrane - -[Term] -id: GO:1905964 ! negative regulation of protein targeting to plasma membrane -is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane -is_a: GO:0090315 {is_inferred="true"} ! negative regulation of protein targeting to membrane -is_a: GO:1905963 {is_inferred="true"} ! regulation of protein targeting to plasma membrane - -[Term] -id: GO:1905965 ! positive regulation of protein targeting to plasma membrane -is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane -is_a: GO:0090314 {is_inferred="true"} ! positive regulation of protein targeting to membrane -is_a: GO:1905963 {is_inferred="true"} ! regulation of protein targeting to plasma membrane - -[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -97905,15 +97860,10 @@ is_a: GO:2001228 {is_inferred="true"} ! regulation of response to gamma radiation [Term] -id: GO:2001231 ! regulation of protein targeting to prospore membrane -is_a: GO:0090313 {is_inferred="true"} ! regulation of protein targeting to membrane +id: GO:2001232 ! positive regulation of protein localization to prospore membrane +is_a: GO:2001231 {is_inferred="true"} ! regulation of protein localization to prospore membrane [Term] -id: GO:2001232 ! positive regulation of protein targeting to prospore membrane -is_a: GO:0090314 {is_inferred="true"} ! positive regulation of protein targeting to membrane -is_a: GO:2001231 {is_inferred="true"} ! regulation of protein targeting to prospore membrane - -[Term] id: GO:2001233 ! regulation of apoptotic signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0042981 {is_inferred="true"} ! regulation of apoptotic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43166) +++ go_inferences.obo (working copy) @@ -91654,7 +91654,6 @@ [Term] id: GO:1990621 ! ESCRT IV complex -is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1904949 {is_inferred="true"} ! ATPase complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43148) +++ go_inferences.obo (working copy) @@ -8280,6 +8280,11 @@ is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] +id: GO:0007312 ! oocyte nucleus migration involved in oocyte dorsal/ventral axis specification +is_a: GO:0007097 {is_inferred="true"} ! nuclear migration +is_a: GO:0022414 {is_inferred="true"} ! reproductive process + +[Term] id: GO:0007315 ! pole plasm assembly is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly @@ -20739,11 +20744,6 @@ is_a: GO:0006996 {is_inferred="true"} ! organelle organization [Term] -id: GO:0030722 ! establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification -is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:0040023 {is_inferred="true"} ! establishment of nucleus localization - -[Term] id: GO:0030725 ! germline ring canal formation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43147) +++ go_inferences.obo (working copy) @@ -42833,6 +42833,10 @@ is_a: GO:0050857 {is_inferred="true"} ! positive regulation of antigen receptor-mediated signaling pathway [Term] +id: GO:0050877 ! nervous system process +is_a: GO:0003008 {is_inferred="true"} ! system process + +[Term] id: GO:0050897 ! cobalt ion binding is_a: GO:0046914 {is_inferred="true"} ! transition metal ion binding ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43133) +++ go_inferences.obo (working copy) @@ -49509,6 +49509,15 @@ is_a: GO:0051641 {is_inferred="true"} ! cellular localization [Term] +id: GO:0061916 ! leading edge of axonal growth cone +is_a: GO:0033267 {is_inferred="true"} ! axon part +is_a: GO:0061850 {is_inferred="true"} ! growth cone leading edge + +[Term] +id: GO:0061917 ! leading edge of dendritic growth cone +is_a: GO:0061850 {is_inferred="true"} ! growth cone leading edge + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43132) +++ go_inferences.obo (working copy) @@ -49505,6 +49505,10 @@ is_a: GO:1903011 {is_inferred="true"} ! negative regulation of bone development [Term] +id: GO:0061915 ! actin fusion focus localization +is_a: GO:0051641 {is_inferred="true"} ! cellular localization + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43131) +++ go_inferences.obo (working copy) @@ -49489,6 +49489,22 @@ is_a: GO:2001258 {is_inferred="true"} ! negative regulation of cation channel activity [Term] +id: GO:0061913 ! positive regulation of growth plate cartilage chondrocyte proliferation +is_a: GO:0003420 {is_inferred="true"} ! regulation of growth plate cartilage chondrocyte proliferation +is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation +is_a: GO:0046622 {is_inferred="true"} ! positive regulation of organ growth +is_a: GO:0061036 {is_inferred="true"} ! positive regulation of cartilage development +is_a: GO:1903012 {is_inferred="true"} ! positive regulation of bone development + +[Term] +id: GO:0061914 ! negative regulation of growth plate cartilage chondrocyte proliferation +is_a: GO:0003420 {is_inferred="true"} ! regulation of growth plate cartilage chondrocyte proliferation +is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation +is_a: GO:0046621 {is_inferred="true"} ! negative regulation of organ growth +is_a: GO:0061037 {is_inferred="true"} ! negative regulation of cartilage development +is_a: GO:1903011 {is_inferred="true"} ! negative regulation of bone development + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43127) +++ go_inferences.obo (working copy) @@ -714,20 +714,22 @@ is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] -id: GO:0000423 ! macromitophagy +id: GO:0000423 ! mitophagy is_a: GO:0000422 {is_inferred="true"} ! autophagy of mitochondrion +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy [Term] -id: GO:0000424 ! microautophagy of mitochondrion +id: GO:0000424 ! micromitophagy is_a: GO:0000422 {is_inferred="true"} ! autophagy of mitochondrion [Term] -id: GO:0000425 ! macropexophagy -is_a: GO:0030242 {is_inferred="true"} ! pexophagy +id: GO:0000425 ! pexophagy +is_a: GO:0030242 {is_inferred="true"} ! autophagy of peroxisome +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy [Term] id: GO:0000426 ! micropexophagy -is_a: GO:0030242 {is_inferred="true"} ! pexophagy +is_a: GO:0030242 {is_inferred="true"} ! autophagy of peroxisome [Term] id: GO:0000427 ! plastid-encoded plastid RNA polymerase complex @@ -28184,6 +28186,10 @@ is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound [Term] +id: GO:0034517 ! ribophagy +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy + +[Term] id: GO:0034518 ! RNA cap binding complex is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex @@ -28400,7 +28406,7 @@ [Term] id: GO:0034727 ! piecemeal microautophagy of nucleus -is_a: GO:0044804 {is_inferred="true"} ! nucleophagy +is_a: GO:0044804 {is_inferred="true"} ! autophagy of nucleus [Term] id: GO:0034728 ! nucleosome organization @@ -29947,6 +29953,10 @@ is_a: GO:2000911 {is_inferred="true"} ! positive regulation of sterol import [Term] +id: GO:0035973 ! aggrephagy +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy + +[Term] id: GO:0035975 ! carbamoyl phosphate catabolic process is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process is_a: GO:0070408 {is_inferred="true"} ! carbamoyl phosphate metabolic process @@ -49154,6 +49164,7 @@ [Term] id: GO:0061709 ! reticulophagy is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy [Term] id: GO:0061716 ! miRNA export from nucleus @@ -49192,8 +49203,13 @@ [Term] id: GO:0061723 ! glycophagy is_a: GO:0005980 {is_inferred="true"} ! glycogen catabolic process +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy [Term] +id: GO:0061724 ! lipophagy +is_a: GO:0061912 {is_inferred="true"} ! selective autophagy + +[Term] id: GO:0061727 ! methylglyoxal catabolic process to lactate is_a: GO:0006089 {is_inferred="true"} ! lactate metabolic process @@ -83809,18 +83825,15 @@ [Term] id: GO:1904502 ! regulation of lipophagy is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy -is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process [Term] id: GO:1904503 ! negative regulation of lipophagy is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy -is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process is_a: GO:1904502 {is_inferred="true"} ! regulation of lipophagy [Term] id: GO:1904504 ! positive regulation of lipophagy is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy -is_a: GO:0050996 {is_inferred="true"} ! positive regulation of lipid catabolic process is_a: GO:1904502 {is_inferred="true"} ! regulation of lipophagy [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43125) +++ go_inferences.obo (working copy) @@ -60586,6 +60586,15 @@ is_a: GO:1904889 {is_inferred="true"} ! regulation of excitatory synapse assembly [Term] +id: GO:0099156 ! cell-cell signaling via exosome +is_a: GO:0007267 {is_inferred="true"} ! cell-cell signaling + +[Term] +id: GO:0099157 ! transynaptic signalling via exosome +is_a: GO:0099156 {is_inferred="true"} ! cell-cell signaling via exosome +is_a: GO:0099537 {is_inferred="true"} ! trans-synaptic signaling + +[Term] id: GO:0099240 ! intrinsic component of synaptic membrane is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43038) +++ go_inferences.obo (working copy) @@ -61716,6 +61716,10 @@ is_a: GO:0120079 {is_inferred="true"} ! regulation of microfilament motor activity [Term] +id: GO:0120085 ! transposon integration involved in RNA-mediated transposition +is_a: GO:0070893 {is_inferred="true"} ! transposon integration + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 43001) +++ go_inferences.obo (working copy) @@ -61473,6 +61473,13 @@ is_a: GO:2000104 {is_inferred="true"} ! negative regulation of DNA-dependent DNA replication [Term] +id: GO:0110028 ! positive regulation of mitotic spindle organization +is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:0060236 {is_inferred="true"} ! regulation of mitotic spindle organization +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -75999,8 +76006,8 @@ id: GO:1902846 ! positive regulation of mitotic spindle elongation is_a: GO:0032888 {is_inferred="true"} ! regulation of mitotic spindle elongation is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division -is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization is_a: GO:0051984 {is_inferred="true"} ! positive regulation of chromosome segregation +is_a: GO:0110028 {is_inferred="true"} ! positive regulation of mitotic spindle organization is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] @@ -84681,9 +84688,7 @@ [Term] id: GO:1904687 ! positive regulation of mitotic spindle disassembly -is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle -is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization -is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process +is_a: GO:0110028 {is_inferred="true"} ! positive regulation of mitotic spindle organization is_a: GO:1904686 {is_inferred="true"} ! regulation of mitotic spindle disassembly [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42979) +++ go_inferences.obo (working copy) @@ -59109,6 +59109,10 @@ is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] +id: GO:0098692 ! noradrenergic synapse +is_a: GO:0045202 {is_inferred="true"} ! synapse + +[Term] id: GO:0098693 ! regulation of synaptic vesicle cycle is_a: GO:0051049 {is_inferred="true"} ! regulation of transport is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization @@ -61691,6 +61695,20 @@ is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation [Term] +id: GO:0120079 ! regulation of microfilament motor activity +is_a: GO:0051336 {is_inferred="true"} ! regulation of hydrolase activity + +[Term] +id: GO:0120080 ! negative regulation of microfilament motor activity +is_a: GO:0051346 {is_inferred="true"} ! negative regulation of hydrolase activity +is_a: GO:0120079 {is_inferred="true"} ! regulation of microfilament motor activity + +[Term] +id: GO:0120081 ! positive regulation of microfilament motor activity +is_a: GO:0051345 {is_inferred="true"} ! positive regulation of hydrolase activity +is_a: GO:0120079 {is_inferred="true"} ! regulation of microfilament motor activity + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport @@ -81849,16 +81867,16 @@ [Term] id: GO:1904110 ! regulation of plus-end directed microfilament motor activity -is_a: GO:0051336 {is_inferred="true"} ! regulation of hydrolase activity +is_a: GO:0120079 {is_inferred="true"} ! regulation of microfilament motor activity [Term] id: GO:1904111 ! negative regulation of plus-end directed microfilament motor activity -is_a: GO:0051346 {is_inferred="true"} ! negative regulation of hydrolase activity +is_a: GO:0120080 {is_inferred="true"} ! negative regulation of microfilament motor activity is_a: GO:1904110 {is_inferred="true"} ! regulation of plus-end directed microfilament motor activity [Term] id: GO:1904112 ! positive regulation of plus-end directed microfilament motor activity -is_a: GO:0051345 {is_inferred="true"} ! positive regulation of hydrolase activity +is_a: GO:0120081 {is_inferred="true"} ! positive regulation of microfilament motor activity is_a: GO:1904110 {is_inferred="true"} ! regulation of plus-end directed microfilament motor activity [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42977) +++ go_inferences.obo (working copy) @@ -61460,6 +61460,15 @@ is_a: GO:2000288 {is_inferred="true"} ! positive regulation of myoblast proliferation [Term] +id: GO:0110026 ! regulation of DNA strand resection involved in replication fork processing +is_a: GO:0090329 {is_inferred="true"} ! regulation of DNA-dependent DNA replication + +[Term] +id: GO:0110027 ! negative regulation of DNA strand resection involved in replication fork processing +is_a: GO:0110026 {is_inferred="true"} ! regulation of DNA strand resection involved in replication fork processing +is_a: GO:2000104 {is_inferred="true"} ! negative regulation of DNA-dependent DNA replication + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42976) +++ go_inferences.obo (working copy) @@ -16960,6 +16960,7 @@ [Term] id: GO:0018873 ! atrazine metabolic process +is_a: GO:0006595 {is_inferred="true"} ! polyamine metabolic process is_a: GO:0018965 {is_inferred="true"} ! s-triazine compound metabolic process [Term] @@ -18030,6 +18031,7 @@ [Term] id: GO:0019381 ! atrazine catabolic process +is_a: GO:0006598 {is_inferred="true"} ! polyamine catabolic process is_a: GO:0018873 {is_inferred="true"} ! atrazine metabolic process is_a: GO:0042204 {is_inferred="true"} ! s-triazine compound catabolic process @@ -18910,7 +18912,6 @@ [Term] id: GO:0019624 ! atrazine catabolic process to isopropylamine -is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:0019381 {is_inferred="true"} ! atrazine catabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process @@ -67295,18 +67296,18 @@ [Term] id: GO:1901055 ! trimethylenediamine metabolic process +is_a: GO:0006595 {is_inferred="true"} ! polyamine metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:1901056 ! trimethylenediamine catabolic process +is_a: GO:0006598 {is_inferred="true"} ! polyamine catabolic process is_a: GO:1901055 {is_inferred="true"} ! trimethylenediamine metabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:1901057 ! trimethylenediamine biosynthetic process +is_a: GO:0006596 {is_inferred="true"} ! polyamine biosynthetic process is_a: GO:1901055 {is_inferred="true"} ! trimethylenediamine metabolic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:1901058 ! p-hydroxyphenyl lignin metabolic process @@ -79441,17 +79442,17 @@ [Term] id: GO:1903601 ! thermospermine metabolic process +is_a: GO:0006595 {is_inferred="true"} ! polyamine metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:1903602 ! thermospermine catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process +is_a: GO:0006598 {is_inferred="true"} ! polyamine catabolic process is_a: GO:1903601 {is_inferred="true"} ! thermospermine metabolic process [Term] id: GO:1903603 ! thermospermine biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process +is_a: GO:0006596 {is_inferred="true"} ! polyamine biosynthetic process is_a: GO:1903601 {is_inferred="true"} ! thermospermine metabolic process [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42970) +++ go_inferences.obo (working copy) @@ -60168,6 +60168,7 @@ [Term] id: GO:0099031 ! anchored component of postsynaptic density membrane is_a: GO:0099030 {is_inferred="true"} ! anchored component of postsynaptic specialization membrane +is_a: GO:0099146 {is_inferred="true"} ! intrinsic component of postsynaptic density membrane [Term] id: GO:0099032 ! anchored component of postsynaptic early endosome membrane @@ -60271,6 +60272,7 @@ [Term] id: GO:0099061 ! integral component of postsynaptic density membrane is_a: GO:0099060 {is_inferred="true"} ! integral component of postsynaptic specialization membrane +is_a: GO:0099146 {is_inferred="true"} ! intrinsic component of postsynaptic density membrane [Term] id: GO:0099062 ! integral component of postsynaptic early endosome membrane @@ -60550,6 +60552,35 @@ is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] +id: GO:0099146 ! intrinsic component of postsynaptic density membrane +is_a: GO:0098948 {is_inferred="true"} ! intrinsic component of postsynaptic specialization membrane + +[Term] +id: GO:0099147 ! extrinsic component of postsynaptic density membrane +is_a: GO:0098892 {is_inferred="true"} ! extrinsic component of postsynaptic specialization membrane + +[Term] +id: GO:0099148 ! regulation of synaptic vesicle docking +is_a: GO:0106020 {is_inferred="true"} ! regulation of vesicle docking +is_a: GO:2000300 {is_inferred="true"} ! regulation of synaptic vesicle exocytosis + +[Term] +id: GO:0099149 ! regulation of postsynaptic neurotransmitter receptor internalization +is_a: GO:0002090 {is_inferred="true"} ! regulation of receptor internalization +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality + +[Term] +id: GO:0099150 ! regulation of postsynaptic specialization assembly +is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly +is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly + +[Term] +id: GO:0099151 ! regulation of postsynaptic density assembly +is_a: GO:0099150 {is_inferred="true"} ! regulation of postsynaptic specialization assembly +is_a: GO:1904889 {is_inferred="true"} ! regulation of excitatory synapse assembly + +[Term] id: GO:0099240 ! intrinsic component of synaptic membrane is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42958) +++ go_inferences.obo (working copy) @@ -91384,6 +91384,7 @@ is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1990545 ! mitochondrial thiamine pyrophosphate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42846) +++ go_inferences.obo (working copy) @@ -1812,10 +1812,6 @@ is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] -id: GO:0001948 ! glycoprotein binding -is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding - -[Term] id: GO:0001952 ! regulation of cell-matrix adhesion is_a: GO:0010810 {is_inferred="true"} ! regulation of cell-substrate adhesion @@ -33543,7 +33539,8 @@ [Term] id: GO:0043394 ! proteoglycan binding -is_a: GO:0001948 {is_inferred="true"} ! glycoprotein binding +is_a: GO:0005515 {is_inferred="true"} ! protein binding +is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding [Term] id: GO:0043395 ! heparan sulfate proteoglycan binding ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42832) +++ go_inferences.obo (working copy) @@ -61094,6 +61094,11 @@ is_a: GO:0100024 {is_inferred="true"} ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter [Term] +id: GO:0100035 ! negative regulation of transmembrane transport by transcription from RNA polymerase II promoter +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter + +[Term] id: GO:0100036 ! positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter is_a: GO:1900373 {is_inferred="true"} ! positive regulation of purine nucleotide biosynthetic process @@ -63756,7 +63761,9 @@ [Term] id: GO:1900417 ! negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1900392 {is_inferred="true"} ! regulation of transport by negative regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900418 ! positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42823) +++ go_inferences.obo (working copy) @@ -61094,11 +61094,6 @@ is_a: GO:0100024 {is_inferred="true"} ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter [Term] -id: GO:0100035 ! negative regulation of transmembrane transport by transcription from RNA polymerase II promoter -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport -is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter - -[Term] id: GO:0100036 ! positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter is_a: GO:1900373 {is_inferred="true"} ! positive regulation of purine nucleotide biosynthetic process @@ -63761,9 +63756,7 @@ [Term] id: GO:1900417 ! negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport -is_a: GO:1900392 {is_inferred="true"} ! regulation of transport by negative regulation of transcription from RNA polymerase II promoter +is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] id: GO:1900418 ! positive regulation of purine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42777) +++ go_inferences.obo (working copy) @@ -13447,9 +13447,8 @@ is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly [Term] -id: GO:0010993 ! regulation of ubiquitin homeostasis -is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process +id: GO:0010992 ! ubiquitin recycling +is_a: GO:0019725 {is_inferred="true"} ! cellular homeostasis [Term] id: GO:0010999 ! regulation of eIF2 alpha phosphorylation by heme @@ -83926,17 +83925,19 @@ [Term] id: GO:1904542 ! regulation of free ubiquitin chain polymerization -is_a: GO:0010993 {is_inferred="true"} ! regulation of ubiquitin homeostasis is_a: GO:0032271 {is_inferred="true"} ! regulation of protein polymerization +is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process [Term] id: GO:1904543 ! negative regulation of free ubiquitin chain polymerization is_a: GO:0032272 {is_inferred="true"} ! negative regulation of protein polymerization +is_a: GO:0032845 {is_inferred="true"} ! negative regulation of homeostatic process is_a: GO:1904542 {is_inferred="true"} ! regulation of free ubiquitin chain polymerization [Term] id: GO:1904544 ! positive regulation of free ubiquitin chain polymerization is_a: GO:0032273 {is_inferred="true"} ! positive regulation of protein polymerization +is_a: GO:0032846 {is_inferred="true"} ! positive regulation of homeostatic process is_a: GO:1904542 {is_inferred="true"} ! regulation of free ubiquitin chain polymerization [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42723) +++ go_inferences.obo (working copy) @@ -710,16 +710,16 @@ is_a: GO:0031062 {is_inferred="true"} ! positive regulation of histone methylation [Term] -id: GO:0000422 ! mitophagy +id: GO:0000422 ! autophagy of mitochondrion is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] id: GO:0000423 ! macromitophagy -is_a: GO:0000422 {is_inferred="true"} ! mitophagy +is_a: GO:0000422 {is_inferred="true"} ! autophagy of mitochondrion [Term] id: GO:0000424 ! microautophagy of mitochondrion -is_a: GO:0000422 {is_inferred="true"} ! mitophagy +is_a: GO:0000422 {is_inferred="true"} ! autophagy of mitochondrion [Term] id: GO:0000425 ! macropexophagy ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42711) +++ go_inferences.obo (working copy) @@ -23205,7 +23205,7 @@ [Term] id: GO:0032222 ! regulation of synaptic transmission, cholinergic -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0032223 ! negative regulation of synaptic transmission, cholinergic @@ -23219,7 +23219,7 @@ [Term] id: GO:0032225 ! regulation of synaptic transmission, dopaminergic -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0032226 ! positive regulation of synaptic transmission, dopaminergic @@ -23233,7 +23233,7 @@ [Term] id: GO:0032228 ! regulation of synaptic transmission, GABAergic -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0032229 ! negative regulation of synaptic transmission, GABAergic @@ -40778,7 +40778,7 @@ [Term] id: GO:0046928 ! regulation of neurotransmitter secretion is_a: GO:0001505 {is_inferred="true"} ! regulation of neurotransmitter levels -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission is_a: GO:0051588 {is_inferred="true"} ! regulation of neurotransmitter transport is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell @@ -42690,7 +42690,7 @@ is_a: GO:0050783 {is_inferred="true"} ! cocaine metabolic process [Term] -id: GO:0050804 ! modulation of synaptic transmission +id: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling @@ -42698,13 +42698,13 @@ id: GO:0050805 ! negative regulation of synaptic transmission is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0050806 ! positive regulation of synaptic transmission is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication is_a: GO:0023056 {is_inferred="true"} ! positive regulation of signaling -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0050807 ! regulation of synapse organization @@ -45226,7 +45226,7 @@ [Term] id: GO:0051966 ! regulation of synaptic transmission, glutamatergic -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0051967 ! negative regulation of synaptic transmission, glutamatergic @@ -45968,7 +45968,7 @@ [Term] id: GO:0060092 ! regulation of synaptic transmission, glycinergic -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0060093 ! negative regulation of synaptic transmission, glycinergic @@ -59446,7 +59446,7 @@ id: GO:0098815 ! modulation of excitatory postsynaptic potential is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0098826 ! endoplasmic reticulum tubular network membrane @@ -59460,7 +59460,7 @@ id: GO:0098828 ! modulation of inhibitory postsynaptic potential is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0098829 ! intestinal folate absorption @@ -59643,20 +59643,17 @@ [Term] id: GO:0098888 ! extrinsic component of presynaptic membrane -is_a: GO:0019897 {is_inferred="true"} ! extrinsic component of plasma membrane -is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0099243 {is_inferred="true"} ! extrinsic component of synaptic membrane [Term] id: GO:0098889 ! intrinsic component of presynaptic membrane -is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane -is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0099240 {is_inferred="true"} ! intrinsic component of synaptic membrane [Term] id: GO:0098890 ! extrinsic component of postsynaptic membrane -is_a: GO:0019897 {is_inferred="true"} ! extrinsic component of plasma membrane -is_a: GO:0044456 {is_inferred="true"} ! synapse part +is_a: GO:0099243 {is_inferred="true"} ! extrinsic component of synaptic membrane [Term] id: GO:0098891 ! extrinsic component of presynaptic active zone membrane @@ -59834,8 +59831,7 @@ [Term] id: GO:0098936 ! intrinsic component of postsynaptic membrane -is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane -is_a: GO:0044456 {is_inferred="true"} ! synapse part +is_a: GO:0099240 {is_inferred="true"} ! intrinsic component of synaptic membrane [Term] id: GO:0098937 ! anterograde dendritic transport @@ -60042,7 +60038,7 @@ [Term] id: GO:0098987 ! regulation of modification of synapse structure, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0098988 ! G-protein coupled glutamate receptor activity @@ -60145,13 +60141,13 @@ [Term] id: GO:0099025 ! anchored component of postsynaptic membrane -is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane +is_a: GO:0099144 {is_inferred="true"} ! anchored component of synaptic membrane [Term] id: GO:0099026 ! anchored component of presynaptic membrane -is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane is_a: GO:0098889 {is_inferred="true"} ! intrinsic component of presynaptic membrane +is_a: GO:0099144 {is_inferred="true"} ! anchored component of synaptic membrane [Term] id: GO:0099027 ! anchored component of presynaptic endocytic zone membrane @@ -60248,13 +60244,13 @@ [Term] id: GO:0099055 ! integral component of postsynaptic membrane -is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane +is_a: GO:0099699 {is_inferred="true"} ! integral component of synaptic membrane [Term] id: GO:0099056 ! integral component of presynaptic membrane -is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane is_a: GO:0098889 {is_inferred="true"} ! intrinsic component of presynaptic membrane +is_a: GO:0099699 {is_inferred="true"} ! integral component of synaptic membrane [Term] id: GO:0099057 ! integral component of presynaptic endocytic zone membrane @@ -60542,6 +60538,11 @@ is_a: GO:0099569 {is_inferred="true"} ! presynaptic cytoskeleton [Term] +id: GO:0099144 ! anchored component of synaptic membrane +is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane +is_a: GO:0099240 {is_inferred="true"} ! intrinsic component of synaptic membrane + +[Term] id: GO:0099145 ! regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport @@ -60553,6 +60554,16 @@ is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] +id: GO:0099240 ! intrinsic component of synaptic membrane +is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane +is_a: GO:0044456 {is_inferred="true"} ! synapse part + +[Term] +id: GO:0099243 ! extrinsic component of synaptic membrane +is_a: GO:0019897 {is_inferred="true"} ! extrinsic component of plasma membrane +is_a: GO:0044456 {is_inferred="true"} ! synapse part + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -60662,15 +60673,15 @@ [Term] id: GO:0099546 ! protein catabolic process, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0099547 ! regulation of translation at synapse, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0099550 ! trans-synaptic signaling, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0099551 ! trans-synaptic signaling by neuropeptide, modulating synaptic transmission @@ -60706,7 +60717,7 @@ [Term] id: GO:0099564 ! modification of synaptic structure, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0099565 ! chemical synaptic transmission, postsynaptic @@ -60740,7 +60751,7 @@ [Term] id: GO:0099574 ! regulation of protein catabolic process at synapse, modulating synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:0099575 ! regulation of protein catabolic process at presynapse, modulating synaptic transmission @@ -60920,6 +60931,11 @@ is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle [Term] +id: GO:0099699 ! integral component of synaptic membrane +is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane +is_a: GO:0099240 {is_inferred="true"} ! intrinsic component of synaptic membrane + +[Term] id: GO:0099703 ! induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission is_a: GO:2000302 {is_inferred="true"} ! positive regulation of synaptic vesicle exocytosis @@ -62058,7 +62074,7 @@ [Term] id: GO:1900073 ! regulation of neuromuscular synaptic transmission -is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission +is_a: GO:0050804 {is_inferred="true"} ! modulation of chemical synaptic transmission [Term] id: GO:1900074 ! negative regulation of neuromuscular synaptic transmission ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42681) +++ go_inferences.obo (working copy) @@ -58443,10 +58443,6 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] -id: GO:0097352 ! autophagosome maturation -is_a: GO:0097576 {is_inferred="true"} ! vacuole fusion - -[Term] id: GO:0097355 ! protein localization to heterochromatin is_a: GO:0071168 {is_inferred="true"} ! protein localization to chromatin @@ -67456,16 +67452,16 @@ [Term] id: GO:1901096 ! regulation of autophagosome maturation -is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization +is_a: GO:0043244 {is_inferred="true"} ! regulation of protein complex disassembly [Term] id: GO:1901097 ! negative regulation of autophagosome maturation -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0043242 {is_inferred="true"} ! negative regulation of protein complex disassembly is_a: GO:1901096 {is_inferred="true"} ! regulation of autophagosome maturation [Term] id: GO:1901098 ! positive regulation of autophagosome maturation -is_a: GO:0044090 {is_inferred="true"} ! positive regulation of vacuole organization +is_a: GO:0043243 {is_inferred="true"} ! positive regulation of protein complex disassembly is_a: GO:1901096 {is_inferred="true"} ! regulation of autophagosome maturation [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42680) +++ go_inferences.obo (working copy) @@ -61402,6 +61402,24 @@ is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization [Term] +id: GO:0110021 ! cardiac muscle myoblast proliferation +is_a: GO:0051450 {is_inferred="true"} ! myoblast proliferation + +[Term] +id: GO:0110022 ! regulation of cardiac muscle myoblast proliferation +is_a: GO:2000291 {is_inferred="true"} ! regulation of myoblast proliferation + +[Term] +id: GO:0110023 ! negative regulation of cardiac muscle myoblast proliferation +is_a: GO:0110022 {is_inferred="true"} ! regulation of cardiac muscle myoblast proliferation +is_a: GO:2000818 {is_inferred="true"} ! negative regulation of myoblast proliferation + +[Term] +id: GO:0110024 ! positive regulation of cardiac muscle myoblast proliferation +is_a: GO:0110022 {is_inferred="true"} ! regulation of cardiac muscle myoblast proliferation +is_a: GO:2000288 {is_inferred="true"} ! positive regulation of myoblast proliferation + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42676) +++ go_inferences.obo (working copy) @@ -49469,6 +49469,13 @@ is_a: GO:0051640 {is_inferred="true"} ! organelle localization [Term] +id: GO:0061907 ! negative regulation of AMPA receptor activity +is_a: GO:1900450 {is_inferred="true"} ! negative regulation of glutamate receptor signaling pathway +is_a: GO:2000272 {is_inferred="true"} ! negative regulation of receptor activity +is_a: GO:2000311 {is_inferred="true"} ! regulation of AMPA receptor activity +is_a: GO:2001258 {is_inferred="true"} ! negative regulation of cation channel activity + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42675) +++ go_inferences.obo (working copy) @@ -33433,8 +33433,9 @@ is_a: GO:1902936 {is_inferred="true"} ! phosphatidylinositol bisphosphate binding [Term] -id: GO:0043328 ! protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway -is_a: GO:0006623 {is_inferred="true"} ! protein targeting to vacuole +id: GO:0043328 ! protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway +is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport +is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole [Term] id: GO:0043329 ! protein targeting to membrane involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42673) +++ go_inferences.obo (working copy) @@ -30238,9 +30238,8 @@ is_a: GO:1902653 {is_inferred="true"} ! secondary alcohol biosynthetic process [Term] -id: GO:0036228 ! protein targeting to nuclear inner membrane -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport -is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle +id: GO:0036228 ! protein localization to nuclear inner membrane +is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090435 {is_inferred="true"} ! protein localization to nuclear envelope [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42666) +++ go_inferences.obo (working copy) @@ -97391,8 +97391,7 @@ [Term] id: GO:2001159 ! regulation of CVT pathway -is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport -is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] id: GO:2001160 ! regulation of histone H3-K79 methylation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42653) +++ go_inferences.obo (working copy) @@ -76462,16 +76462,22 @@ [Term] id: GO:1902959 ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:0052548 {is_inferred="true"} ! regulation of endopeptidase activity +is_a: GO:1902991 {is_inferred="true"} ! regulation of amyloid precursor protein catabolic process is_a: GO:1905245 {is_inferred="true"} ! regulation of aspartic-type peptidase activity [Term] id: GO:1902960 ! negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:0010951 {is_inferred="true"} ! negative regulation of endopeptidase activity is_a: GO:1902959 {is_inferred="true"} ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1902992 {is_inferred="true"} ! negative regulation of amyloid precursor protein catabolic process is_a: GO:1905246 {is_inferred="true"} ! negative regulation of aspartic-type peptidase activity [Term] id: GO:1902961 ! positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:0010950 {is_inferred="true"} ! positive regulation of endopeptidase activity is_a: GO:1902959 {is_inferred="true"} ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1902993 {is_inferred="true"} ! positive regulation of amyloid precursor protein catabolic process is_a: GO:1905247 {is_inferred="true"} ! positive regulation of aspartic-type peptidase activity [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42652) +++ go_inferences.obo (working copy) @@ -49465,6 +49465,10 @@ is_a: GO:0061901 {is_inferred="true"} ! regulation of 1-phosphatidylinositol-3-kinase activity [Term] +id: GO:0061906 ! autophagosome localization +is_a: GO:0051640 {is_inferred="true"} ! organelle localization + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42648) +++ go_inferences.obo (working copy) @@ -30239,7 +30239,8 @@ [Term] id: GO:0036228 ! protein targeting to nuclear inner membrane -is_a: GO:0044744 {is_inferred="true"} ! protein targeting to nucleus +is_a: GO:0051169 {is_inferred="true"} ! nuclear transport +is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle is_a: GO:0090435 {is_inferred="true"} ! protein localization to nuclear envelope [Term] @@ -31269,9 +31270,9 @@ [Term] id: GO:0042306 ! regulation of protein import into nucleus +is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport is_a: GO:1900180 {is_inferred="true"} ! regulation of protein localization to nucleus -is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting is_a: GO:1904589 {is_inferred="true"} ! regulation of protein import [Term] @@ -34917,13 +34918,6 @@ is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] -id: GO:0044744 ! protein targeting to nucleus -is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport -is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle - -[Term] id: GO:0044745 ! amino acid transmembrane import is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42638) +++ go_inferences.obo (working copy) @@ -13456,6 +13456,10 @@ is_a: GO:0006446 {is_inferred="true"} ! regulation of translational initiation [Term] +id: GO:0012507 ! ER to Golgi transport vesicle membrane +is_a: GO:0030660 {is_inferred="true"} ! Golgi-associated vesicle membrane + +[Term] id: GO:0014004 ! microglia differentiation is_a: GO:0030225 {is_inferred="true"} ! macrophage differentiation @@ -16558,6 +16562,10 @@ is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy [Term] +id: GO:0016240 ! autophagosome membrane docking +is_a: GO:0140056 {is_inferred="true"} ! organelle localization by membrane tethering + +[Term] id: GO:0016241 ! regulation of macroautophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy @@ -19957,6 +19965,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0030127 ! COPII vesicle coat +is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part + +[Term] id: GO:0030129 ! clathrin coat of synaptic vesicle is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -22996,7 +23008,7 @@ [Term] id: GO:0032122 ! oral apparatus organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0016043 {is_inferred="true"} ! cellular component organization [Term] id: GO:0032124 ! macronucleus organization @@ -52853,6 +52865,11 @@ is_a: GO:0030176 {is_inferred="true"} ! integral component of endoplasmic reticulum membrane [Term] +id: GO:0071562 ! nucleus-vacuole junction assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0140056 {is_inferred="true"} ! organelle localization by membrane tethering + +[Term] id: GO:0071574 ! protein localization to medial cortex is_a: GO:0072741 {is_inferred="true"} ! protein localization to cell division site @@ -56561,7 +56578,7 @@ [Term] id: GO:0090114 ! COPII-coated vesicle budding -is_a: GO:0006900 {is_inferred="true"} ! membrane budding +is_a: GO:0048194 {is_inferred="true"} ! Golgi vesicle budding [Term] id: GO:0090118 ! receptor-mediated endocytosis involved in cholesterol transport @@ -61299,6 +61316,7 @@ [Term] id: GO:0106020 ! regulation of vesicle docking +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport [Term] @@ -61681,6 +61699,10 @@ is_a: GO:0010467 {is_inferred="true"} ! gene expression [Term] +id: GO:0140056 ! organelle localization by membrane tethering +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -91203,7 +91225,7 @@ is_a: GO:1904144 {is_inferred="true"} ! phosphatidylinositol phosphate phosphatase complex [Term] -id: GO:1990456 ! mitochondrion-ER tethering +id: GO:1990456 ! mitochondrion-endoplasmic reticulum membrane tethering is_a: GO:0016043 {is_inferred="true"} ! cellular component organization [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42628) +++ go_inferences.obo (working copy) @@ -61587,6 +61587,20 @@ is_a: GO:1904305 {is_inferred="true"} ! negative regulation of gastro-intestinal system smooth muscle contraction [Term] +id: GO:0120074 ! regulation of endocardial cushion cell differentiation +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation + +[Term] +id: GO:0120075 ! positive regulation of endocardial cushion cell differentiation +is_a: GO:0120074 {is_inferred="true"} ! regulation of endocardial cushion cell differentiation +is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation + +[Term] +id: GO:0120076 ! negative regulation of endocardial cushion cell differentiation +is_a: GO:0120074 {is_inferred="true"} ! regulation of endocardial cushion cell differentiation +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42614) +++ go_inferences.obo (working copy) @@ -1139,12 +1139,12 @@ [Term] id: GO:0000964 ! mitochondrial RNA 5'-end processing -is_a: GO:0000963 {is_inferred="true"} ! mitochondrial RNA processing +is_a: GO:0000959 {is_inferred="true"} ! mitochondrial RNA metabolic process is_a: GO:0000966 {is_inferred="true"} ! RNA 5'-end processing [Term] id: GO:0000965 ! mitochondrial RNA 3'-end processing -is_a: GO:0000963 {is_inferred="true"} ! mitochondrial RNA processing +is_a: GO:0000959 {is_inferred="true"} ! mitochondrial RNA metabolic process is_a: GO:0031123 {is_inferred="true"} ! RNA 3'-end processing [Term] @@ -51214,7 +51214,6 @@ [Term] id: GO:0070900 ! mitochondrial tRNA modification is_a: GO:0006400 {is_inferred="true"} ! tRNA modification -is_a: GO:0090646 {is_inferred="true"} ! mitochondrial tRNA processing is_a: GO:1900864 {is_inferred="true"} ! mitochondrial RNA modification [Term] @@ -57887,7 +57886,7 @@ [Term] id: GO:0090615 ! mitochondrial mRNA processing -is_a: GO:0000963 {is_inferred="true"} ! mitochondrial RNA processing +is_a: GO:0000959 {is_inferred="true"} ! mitochondrial RNA metabolic process [Term] id: GO:0090616 ! mitochondrial mRNA 3'-end processing @@ -58651,7 +58650,6 @@ [Term] id: GO:0097745 ! mitochondrial tRNA 5'-end processing is_a: GO:0000964 {is_inferred="true"} ! mitochondrial RNA 5'-end processing -is_a: GO:0090646 {is_inferred="true"} ! mitochondrial tRNA processing is_a: GO:0099116 {is_inferred="true"} ! tRNA 5'-end processing [Term] @@ -61665,6 +61663,10 @@ is_a: GO:0140049 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition [Term] +id: GO:0140053 ! mitochondrial gene expression +is_a: GO:0010467 {is_inferred="true"} ! gene expression + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42610) +++ go_inferences.obo (working copy) @@ -45815,6 +45815,10 @@ is_a: GO:0010033 {is_inferred="true"} ! response to organic substance [Term] +id: GO:0055098 ! response to low-density lipoprotein particle stimulus +is_a: GO:0071402 {is_inferred="true"} ! cellular response to lipoprotein particle stimulus + +[Term] id: GO:0055107 ! Golgi to secretory granule transport is_a: GO:0046907 {is_inferred="true"} ! intracellular transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42609) +++ go_inferences.obo (working copy) @@ -61646,6 +61646,21 @@ is_a: GO:0071421 {is_inferred="true"} ! manganese ion transmembrane transport [Term] +id: GO:0140049 ! regulation of endocardial cushion to mesenchymal transition +is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition +is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis + +[Term] +id: GO:0140050 ! negative regulation of endocardial cushion to mesenchymal transition +is_a: GO:0010719 {is_inferred="true"} ! negative regulation of epithelial to mesenchymal transition +is_a: GO:0140049 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition + +[Term] +id: GO:0140051 ! positive regulation of endocardial cushion to mesenchymal transition +is_a: GO:0010718 {is_inferred="true"} ! positive regulation of epithelial to mesenchymal transition +is_a: GO:0140049 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -95634,17 +95649,16 @@ [Term] id: GO:2000800 ! regulation of endocardial cushion to mesenchymal transition involved in heart valve formation -is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition -is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis +is_a: GO:0140049 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition [Term] id: GO:2000801 ! negative regulation of endocardial cushion to mesenchymal transition involved in heart valve formation -is_a: GO:0010719 {is_inferred="true"} ! negative regulation of epithelial to mesenchymal transition +is_a: GO:0140050 {is_inferred="true"} ! negative regulation of endocardial cushion to mesenchymal transition is_a: GO:2000800 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition involved in heart valve formation [Term] id: GO:2000802 ! positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation -is_a: GO:0010718 {is_inferred="true"} ! positive regulation of epithelial to mesenchymal transition +is_a: GO:0140051 {is_inferred="true"} ! positive regulation of endocardial cushion to mesenchymal transition is_a: GO:2000800 {is_inferred="true"} ! regulation of endocardial cushion to mesenchymal transition involved in heart valve formation [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42528) +++ go_inferences.obo (working copy) @@ -61642,6 +61642,10 @@ is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] +id: GO:0140048 ! manganese ion export from cell +is_a: GO:0071421 {is_inferred="true"} ! manganese ion transmembrane transport + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42508) +++ go_inferences.obo (working copy) @@ -49438,6 +49438,23 @@ is_a: GO:0001775 {is_inferred="true"} ! cell activation [Term] +id: GO:0061901 ! regulation of 1-phosphatidylinositol-3-kinase activity +is_a: GO:0010511 {is_inferred="true"} ! regulation of phosphatidylinositol biosynthetic process +is_a: GO:0043551 {is_inferred="true"} ! regulation of phosphatidylinositol 3-kinase activity + +[Term] +id: GO:0061902 ! negative regulation of 1-phosphatidylinositol-3-kinase activity +is_a: GO:0010512 {is_inferred="true"} ! negative regulation of phosphatidylinositol biosynthetic process +is_a: GO:0043553 {is_inferred="true"} ! negative regulation of phosphatidylinositol 3-kinase activity +is_a: GO:0061901 {is_inferred="true"} ! regulation of 1-phosphatidylinositol-3-kinase activity + +[Term] +id: GO:0061903 ! positive regulation of 1-phosphatidylinositol-3-kinase activity +is_a: GO:0010513 {is_inferred="true"} ! positive regulation of phosphatidylinositol biosynthetic process +is_a: GO:0043552 {is_inferred="true"} ! positive regulation of phosphatidylinositol 3-kinase activity +is_a: GO:0061901 {is_inferred="true"} ! regulation of 1-phosphatidylinositol-3-kinase activity + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42504) +++ go_inferences.obo (working copy) @@ -8074,11 +8074,6 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] -id: GO:0007101 ! male meiosis centrosome cycle -is_a: GO:0007098 {is_inferred="true"} ! centrosome cycle -is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process - -[Term] id: GO:0007116 ! regulation of cell budding is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division is_a: GO:1903664 {is_inferred="true"} ! regulation of asexual reproduction ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42450) +++ go_inferences.obo (working copy) @@ -46393,9 +46393,9 @@ [Term] id: GO:0060297 ! regulation of sarcomere organization is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:0110020 {is_inferred="true"} ! regulation of actomyosin structure organization is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] @@ -61361,6 +61361,10 @@ is_a: GO:0044452 {is_inferred="true"} ! nucleolar part [Term] +id: GO:0110020 ! regulation of actomyosin structure organization +is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -87515,8 +87519,8 @@ [Term] id: GO:1905304 ! regulation of cardiac myofibril assembly is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:0110020 {is_inferred="true"} ! regulation of actomyosin structure organization is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation @@ -93819,8 +93823,8 @@ [Term] id: GO:2000431 ! regulation of cytokinesis, actomyosin contractile ring assembly is_a: GO:0032954 {is_inferred="true"} ! regulation of cytokinetic process -is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:0110020 {is_inferred="true"} ! regulation of actomyosin structure organization [Term] id: GO:2000432 ! negative regulation of cytokinesis, actomyosin contractile ring assembly ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42446) +++ go_inferences.obo (working copy) @@ -6544,17 +6544,15 @@ is_a: GO:0051170 {is_inferred="true"} ! nuclear import [Term] -id: GO:0006406 ! mRNA export from nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport +id: GO:0006407 ! rRNA export from nucleus +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] -id: GO:0006407 ! rRNA export from nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport +id: GO:0006408 ! snRNA export from nucleus is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0006409 ! tRNA export from nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -6969,9 +6967,8 @@ is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0017038 {is_inferred="true"} ! protein import is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] id: GO:0006608 ! snRNP protein import into nucleus @@ -6978,10 +6975,6 @@ is_a: GO:0071167 {is_inferred="true"} ! ribonucleoprotein complex import into nucleus [Term] -id: GO:0006611 ! protein export from nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport - -[Term] id: GO:0006612 ! protein targeting to membrane is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane @@ -30746,6 +30739,10 @@ is_a: GO:0044423 {is_inferred="true"} ! virion part [Term] +id: GO:0039674 ! exit of virus from host cell nucleus +is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport + +[Term] id: GO:0039708 ! nuclear capsid assembly is_a: GO:0019069 {is_inferred="true"} ! viral capsid assembly @@ -31265,6 +31262,7 @@ [Term] id: GO:0042306 ! regulation of protein import into nucleus +is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport is_a: GO:1900180 {is_inferred="true"} ! regulation of protein localization to nucleus is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting is_a: GO:1904589 {is_inferred="true"} ! regulation of protein import @@ -31272,6 +31270,7 @@ [Term] id: GO:0042307 ! positive regulation of protein import into nucleus is_a: GO:0042306 {is_inferred="true"} ! regulation of protein import into nucleus +is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport is_a: GO:1900182 {is_inferred="true"} ! positive regulation of protein localization to nucleus is_a: GO:1904591 {is_inferred="true"} ! positive regulation of protein import @@ -31279,6 +31278,7 @@ [Term] id: GO:0042308 ! negative regulation of protein import into nucleus is_a: GO:0042306 {is_inferred="true"} ! regulation of protein import into nucleus +is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport is_a: GO:1900181 {is_inferred="true"} ! negative regulation of protein localization to nucleus is_a: GO:1904590 {is_inferred="true"} ! negative regulation of protein import @@ -34911,6 +34911,7 @@ [Term] id: GO:0044744 ! protein targeting to nucleus +is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus is_a: GO:0051169 {is_inferred="true"} ! nuclear transport is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle @@ -40613,29 +40614,35 @@ [Term] id: GO:0046828 ! regulation of RNA import into nucleus is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport +is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046829 ! negative regulation of RNA import into nucleus is_a: GO:0032240 {is_inferred="true"} ! negative regulation of nucleobase-containing compound transport +is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046828 {is_inferred="true"} ! regulation of RNA import into nucleus [Term] id: GO:0046830 ! positive regulation of RNA import into nucleus is_a: GO:0032241 {is_inferred="true"} ! positive regulation of nucleobase-containing compound transport +is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046828 {is_inferred="true"} ! regulation of RNA import into nucleus [Term] id: GO:0046831 ! regulation of RNA export from nucleus is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport +is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046832 ! negative regulation of RNA export from nucleus is_a: GO:0032240 {is_inferred="true"} ! negative regulation of nucleobase-containing compound transport +is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus [Term] id: GO:0046833 ! positive regulation of RNA export from nucleus is_a: GO:0032241 {is_inferred="true"} ! positive regulation of nucleobase-containing compound transport +is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus [Term] @@ -43449,18 +43456,10 @@ is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] -id: GO:0051168 ! nuclear export -is_a: GO:0006810 {is_inferred="true"} ! transport - -[Term] id: GO:0051169 ! nuclear transport is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] -id: GO:0051170 ! nuclear import -is_a: GO:0006810 {is_inferred="true"} ! transport - -[Term] id: GO:0051174 ! regulation of phosphorus metabolic process is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process @@ -44273,25 +44272,17 @@ is_a: GO:0051516 {is_inferred="true"} ! regulation of bipolar cell growth [Term] -id: GO:0051531 ! NFAT protein import into nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport -is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import - -[Term] id: GO:0051532 ! regulation of NFAT protein import into nucleus is_a: GO:0042990 {is_inferred="true"} ! regulation of transcription factor import into nucleus -is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0051533 ! positive regulation of NFAT protein import into nucleus is_a: GO:0042993 {is_inferred="true"} ! positive regulation of transcription factor import into nucleus -is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus [Term] id: GO:0051534 ! negative regulation of NFAT protein import into nucleus is_a: GO:0042992 {is_inferred="true"} ! negative regulation of transcription factor import into nucleus -is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus [Term] @@ -51812,8 +51803,8 @@ [Term] id: GO:0071167 ! ribonucleoprotein complex import into nucleus +is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus -is_a: GO:0050658 {is_inferred="true"} ! RNA transport [Term] id: GO:0071169 ! establishment of protein localization to chromatin @@ -74679,13 +74670,13 @@ [Term] id: GO:1902593 ! single-organism nuclear import -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0051170 {is_inferred="true"} ! nuclear import +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1902594 ! multi-organism nuclear import -is_a: GO:0044766 {is_inferred="true"} ! multi-organism transport is_a: GO:0051170 {is_inferred="true"} ! nuclear import +is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport [Term] id: GO:1902595 ! regulation of DNA replication origin binding @@ -90971,9 +90962,7 @@ [Term] id: GO:1990236 ! proteasome core complex import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus -is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:0031503 {is_inferred="true"} ! protein complex localization -is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] id: GO:1990237 ! sequestration of proteasome core complex in proteasome storage granule ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42444) +++ go_inferences.obo (working copy) @@ -20267,6 +20267,10 @@ is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] +id: GO:0030382 ! sperm mitochondrion organization +is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization + +[Term] id: GO:0030386 ! ferredoxin:thioredoxin reductase complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42441) +++ go_inferences.obo (working copy) @@ -13683,7 +13683,7 @@ is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] -id: GO:0014069 ! postsynaptic density +id: GO:0014069 ! postsynaptic density of dendrite is_a: GO:0099572 {is_inferred="true"} ! postsynaptic specialization [Term] @@ -58482,6 +58482,10 @@ is_a: GO:0051402 {is_inferred="true"} ! neuron apoptotic process [Term] +id: GO:0097482 ! muscle cell postsynaptic density +is_a: GO:0099572 {is_inferred="true"} ! postsynaptic specialization + +[Term] id: GO:0097488 ! multivesicular body, internal vesicle membrane is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42435) +++ go_inferences.obo (working copy) @@ -22533,7 +22533,7 @@ is_a: GO:0031779 {is_inferred="true"} ! melanocortin receptor binding [Term] -id: GO:0031887 ! lipid particle transport along microtubule +id: GO:0031887 ! lipid droplet transport along microtubule is_a: GO:0072384 {is_inferred="true"} ! organelle transport along microtubule [Term] @@ -61623,6 +61623,10 @@ is_a: GO:1990748 {is_inferred="true"} ! cellular detoxification [Term] +id: GO:0140042 ! lipid droplet formation +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -89349,7 +89353,7 @@ is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] -id: GO:1905691 ! lipid particle disassembly +id: GO:1905691 ! lipid droplet disassembly is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -90722,7 +90726,7 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] -id: GO:1990044 ! protein localization to lipid particle +id: GO:1990044 ! protein localization to lipid droplet is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42424) +++ go_inferences.obo (working copy) @@ -61619,6 +61619,10 @@ is_a: GO:0090615 {is_inferred="true"} ! mitochondrial mRNA processing [Term] +id: GO:0140041 ! cellular detoxification of methylglyoxal +is_a: GO:1990748 {is_inferred="true"} ! cellular detoxification + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42369) +++ go_inferences.obo (working copy) @@ -61614,6 +61614,11 @@ is_a: GO:0016337 {is_inferred="true"} ! single organismal cell-cell adhesion [Term] +id: GO:0140040 ! mitochondrial polycistronic RNA processing +is_a: GO:0031426 {is_inferred="true"} ! polycistronic mRNA processing +is_a: GO:0090615 {is_inferred="true"} ! mitochondrial mRNA processing + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42353) +++ go_inferences.obo (working copy) @@ -83582,7 +83582,7 @@ is_a: GO:0070869 {is_inferred="true"} ! heterochromatin assembly involved in chromatin silencing [Term] -id: GO:1904498 ! protein localization to actomyosin contractile ring involved in mitotic cytokinesis +id: GO:1904498 ! protein localization to mitotic actomyosin contractile ring is_a: GO:1990179 {is_inferred="true"} ! protein localization to actomyosin contractile ring [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42325) +++ go_inferences.obo (working copy) @@ -61514,6 +61514,62 @@ is_a: GO:0120046 {is_inferred="true"} ! regulation of protein localization to medial cortical node [Term] +id: GO:0120057 ! regulation of small intestinal transit +is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process + +[Term] +id: GO:0120058 ! positive regulation of small intestinal transit +is_a: GO:0060456 {is_inferred="true"} ! positive regulation of digestive system process +is_a: GO:0120057 {is_inferred="true"} ! regulation of small intestinal transit + +[Term] +id: GO:0120059 ! negative regulation of small intestinal transit +is_a: GO:0060457 {is_inferred="true"} ! negative regulation of digestive system process +is_a: GO:0120057 {is_inferred="true"} ! regulation of small intestinal transit + +[Term] +id: GO:0120060 ! regulation of gastric emptying +is_a: GO:1905333 {is_inferred="true"} ! regulation of gastric motility + +[Term] +id: GO:0120061 ! negative regulation of gastric emptying +is_a: GO:0060457 {is_inferred="true"} ! negative regulation of digestive system process +is_a: GO:0120060 {is_inferred="true"} ! regulation of gastric emptying + +[Term] +id: GO:0120062 ! positive regulation of gastric emptying +is_a: GO:0060456 {is_inferred="true"} ! positive regulation of digestive system process +is_a: GO:0120060 {is_inferred="true"} ! regulation of gastric emptying + +[Term] +id: GO:0120068 ! regulation of stomach fundus smooth muscle contraction +is_a: GO:1904304 {is_inferred="true"} ! regulation of gastro-intestinal system smooth muscle contraction + +[Term] +id: GO:0120069 ! positive regulation of stomach fundus smooth muscle contraction +is_a: GO:0120068 {is_inferred="true"} ! regulation of stomach fundus smooth muscle contraction +is_a: GO:1904306 {is_inferred="true"} ! positive regulation of gastro-intestinal system smooth muscle contraction + +[Term] +id: GO:0120070 ! negative regulation of stomach fundus smooth muscle contraction +is_a: GO:0120068 {is_inferred="true"} ! regulation of stomach fundus smooth muscle contraction +is_a: GO:1904305 {is_inferred="true"} ! negative regulation of gastro-intestinal system smooth muscle contraction + +[Term] +id: GO:0120071 ! regulation of pyloric antrum smooth muscle contraction +is_a: GO:1904304 {is_inferred="true"} ! regulation of gastro-intestinal system smooth muscle contraction + +[Term] +id: GO:0120072 ! positive regulation of pyloric antrum smooth muscle contraction +is_a: GO:0120071 {is_inferred="true"} ! regulation of pyloric antrum smooth muscle contraction +is_a: GO:1904306 {is_inferred="true"} ! positive regulation of gastro-intestinal system smooth muscle contraction + +[Term] +id: GO:0120073 ! negative regulation of pyloric antrum smooth muscle contraction +is_a: GO:0120071 {is_inferred="true"} ! regulation of pyloric antrum smooth muscle contraction +is_a: GO:1904305 {is_inferred="true"} ! negative regulation of gastro-intestinal system smooth muscle contraction + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42298) +++ go_inferences.obo (working copy) @@ -38863,6 +38863,7 @@ id: GO:0046216 ! indole phytoalexin catabolic process is_a: GO:0042436 {is_inferred="true"} ! indole-containing compound catabolic process is_a: GO:0046217 {is_inferred="true"} ! indole phytoalexin metabolic process +is_a: GO:0051410 {is_inferred="true"} ! detoxification of nitrogen compound [Term] id: GO:0046217 ! indole phytoalexin metabolic process @@ -38903,6 +38904,7 @@ id: GO:0046225 ! bacteriocin catabolic process is_a: GO:0030652 {is_inferred="true"} ! peptide antibiotic catabolic process is_a: GO:0046224 {is_inferred="true"} ! bacteriocin metabolic process +is_a: GO:0051410 {is_inferred="true"} ! detoxification of nitrogen compound [Term] id: GO:0046226 ! coumarin catabolic process @@ -98015,6 +98017,7 @@ is_a: GO:0043171 {is_inferred="true"} ! peptide catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:0051410 {is_inferred="true"} ! detoxification of nitrogen compound is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:2001308 {is_inferred="true"} ! gliotoxin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42294) +++ go_inferences.obo (working copy) @@ -59109,6 +59109,11 @@ is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] +id: GO:0098699 ! structural constituent of presynaptic actin cytoskeleton +is_a: GO:0005200 {is_inferred="true"} ! structural constituent of cytoskeleton +is_a: GO:0098918 {is_inferred="true"} ! structural constituent of synapse + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -59551,6 +59556,7 @@ [Term] id: GO:0098871 ! postsynaptic actin cytoskeleton +is_a: GO:0015629 {is_inferred="true"} ! actin cytoskeleton is_a: GO:0099571 {is_inferred="true"} ! postsynaptic cytoskeleton [Term] @@ -59981,6 +59987,7 @@ [Term] id: GO:0098973 ! structural constituent of postsynaptic actin cytoskeleton is_a: GO:0005200 {is_inferred="true"} ! structural constituent of cytoskeleton +is_a: GO:0098918 {is_inferred="true"} ! structural constituent of synapse [Term] id: GO:0098974 ! postsynaptic actin cytoskeleton organization @@ -60493,6 +60500,26 @@ is_a: GO:0099131 {is_inferred="true"} ! ATP hydrolysis coupled ion transmembrane transport [Term] +id: GO:0099140 ! presynaptic actin cytoskeleton organization +is_a: GO:0030036 {is_inferred="true"} ! actin cytoskeleton organization + +[Term] +id: GO:0099143 ! presynaptic actin cytoskeleton +is_a: GO:0015629 {is_inferred="true"} ! actin cytoskeleton +is_a: GO:0099569 {is_inferred="true"} ! presynaptic cytoskeleton + +[Term] +id: GO:0099145 ! regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane +is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis +is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality +is_a: GO:1902473 {is_inferred="true"} ! regulation of protein localization to synapse +is_a: GO:1902683 {is_inferred="true"} ! regulation of receptor localization to synapse +is_a: GO:1904375 {is_inferred="true"} ! regulation of protein localization to cell periphery +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 42292) +++ go_inferences.obo (working copy) @@ -1469,6 +1469,7 @@ [Term] id: GO:0001774 ! microglial cell activation is_a: GO:0042116 {is_inferred="true"} ! macrophage activation +is_a: GO:0061900 {is_inferred="true"} ! glial cell activation [Term] id: GO:0001781 ! neutrophil apoptotic process @@ -41125,6 +41126,10 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] +id: GO:0048143 ! astrocyte activation +is_a: GO:0061900 {is_inferred="true"} ! glial cell activation + +[Term] id: GO:0048145 ! regulation of fibroblast proliferation is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation @@ -49437,6 +49442,10 @@ is_a: GO:0061888 {is_inferred="true"} ! regulation of astrocyte activation [Term] +id: GO:0061900 ! glial cell activation +is_a: GO:0001775 {is_inferred="true"} ! cell activation + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41936) +++ go_inferences.obo (working copy) @@ -48114,8 +48114,8 @@ is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] -id: GO:0061016 ! snRNA import into Cajal body -is_a: GO:0051030 {is_inferred="true"} ! snRNA transport +id: GO:0061016 ! snRNA localization to Cajal body +is_a: GO:0090670 {is_inferred="true"} ! RNA localization to Cajal body [Term] id: GO:0061017 ! hepatoblast differentiation @@ -57889,6 +57889,10 @@ is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] +id: GO:0090670 ! RNA localization to Cajal body +is_a: GO:0090685 {is_inferred="true"} ! RNA localization to nucleus + +[Term] id: GO:0090679 ! cell differentiation involved in phenotypic switching is_a: GO:0030154 {is_inferred="true"} ! cell differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41926) +++ go_inferences.obo (working copy) @@ -6538,15 +6538,22 @@ is_a: GO:0016071 {is_inferred="true"} ! mRNA metabolic process [Term] +id: GO:0006404 ! RNA import into nucleus +is_a: GO:0050658 {is_inferred="true"} ! RNA transport +is_a: GO:0051170 {is_inferred="true"} ! nuclear import + +[Term] id: GO:0006406 ! mRNA export from nucleus -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport [Term] id: GO:0006407 ! rRNA export from nucleus +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0006409 ! tRNA export from nucleus +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -6961,6 +6968,7 @@ is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0017038 {is_inferred="true"} ! protein import is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus +is_a: GO:0051169 {is_inferred="true"} ! nuclear transport is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -6970,7 +6978,7 @@ [Term] id: GO:0006611 ! protein export from nucleus -is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport [Term] id: GO:0006612 ! protein targeting to membrane @@ -7813,6 +7821,10 @@ is_a: GO:0099024 {is_inferred="true"} ! plasma membrane invagination [Term] +id: GO:0006913 ! nucleocytoplasmic transport +is_a: GO:0051169 {is_inferred="true"} ! nuclear transport + +[Term] id: GO:0006921 ! cellular component disassembly involved in execution phase of apoptosis is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly @@ -22802,7 +22814,7 @@ [Term] id: GO:0032066 ! nucleolus to nucleoplasm transport -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:0051169 {is_inferred="true"} ! nuclear transport [Term] id: GO:0032068 ! Type IV site-specific deoxyribonuclease complex @@ -29557,6 +29569,8 @@ [Term] id: GO:0035719 ! tRNA import into nucleus +is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus +is_a: GO:0051031 {is_inferred="true"} ! tRNA transport is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] @@ -34625,11 +34639,6 @@ is_a: GO:0044468 {is_inferred="true"} ! envenomation resulting in modulation of blood coagulation in other organism [Term] -id: GO:0044376 ! RNA polymerase II complex import to nucleus -is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host -is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import - -[Term] id: GO:0044379 ! protein localization to actin cortical patch is_a: GO:0072697 {is_inferred="true"} ! protein localization to cell cortex is_a: GO:1903119 {is_inferred="true"} ! protein localization to actin cytoskeleton @@ -34898,6 +34907,7 @@ [Term] id: GO:0044744 ! protein targeting to nucleus is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus +is_a: GO:0051169 {is_inferred="true"} ! nuclear transport is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle [Term] @@ -40564,27 +40574,25 @@ [Term] id: GO:0046822 ! regulation of nucleocytoplasmic transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport [Term] id: GO:0046823 ! negative regulation of nucleocytoplasmic transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport [Term] id: GO:0046824 ! positive regulation of nucleocytoplasmic transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport [Term] id: GO:0046825 ! regulation of protein export from nucleus is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport -is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046826 ! negative regulation of protein export from nucleus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport @@ -40591,7 +40599,6 @@ [Term] id: GO:0046827 ! positive regulation of protein export from nucleus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport @@ -40599,35 +40606,29 @@ [Term] id: GO:0046828 ! regulation of RNA import into nucleus is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport -is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046829 ! negative regulation of RNA import into nucleus is_a: GO:0032240 {is_inferred="true"} ! negative regulation of nucleobase-containing compound transport -is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046828 {is_inferred="true"} ! regulation of RNA import into nucleus [Term] id: GO:0046830 ! positive regulation of RNA import into nucleus is_a: GO:0032241 {is_inferred="true"} ! positive regulation of nucleobase-containing compound transport -is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046828 {is_inferred="true"} ! regulation of RNA import into nucleus [Term] id: GO:0046831 ! regulation of RNA export from nucleus is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport -is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046832 ! negative regulation of RNA export from nucleus is_a: GO:0032240 {is_inferred="true"} ! negative regulation of nucleobase-containing compound transport -is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus [Term] id: GO:0046833 ! positive regulation of RNA export from nucleus is_a: GO:0032241 {is_inferred="true"} ! positive regulation of nucleobase-containing compound transport -is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus [Term] @@ -43437,7 +43438,15 @@ is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] +id: GO:0051168 ! nuclear export +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] id: GO:0051169 ! nuclear transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport + +[Term] +id: GO:0051170 ! nuclear import is_a: GO:0006810 {is_inferred="true"} ! transport [Term] @@ -44254,20 +44263,17 @@ [Term] id: GO:0051531 ! NFAT protein import into nucleus -is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import -is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import [Term] id: GO:0051532 ! regulation of NFAT protein import into nucleus is_a: GO:0042990 {is_inferred="true"} ! regulation of transcription factor import into nucleus -is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0051533 ! positive regulation of NFAT protein import into nucleus is_a: GO:0042993 {is_inferred="true"} ! positive regulation of transcription factor import into nucleus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus @@ -44274,7 +44280,6 @@ [Term] id: GO:0051534 ! negative regulation of NFAT protein import into nucleus is_a: GO:0042992 {is_inferred="true"} ! negative regulation of transcription factor import into nucleus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus @@ -48104,9 +48109,15 @@ [Term] id: GO:0061015 ! snRNA import into nucleus +is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus +is_a: GO:0051030 {is_inferred="true"} ! snRNA transport is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] +id: GO:0061016 ! snRNA import into Cajal body +is_a: GO:0051030 {is_inferred="true"} ! snRNA transport + +[Term] id: GO:0061017 ! hepatoblast differentiation is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation @@ -51786,11 +51797,8 @@ [Term] id: GO:0071167 ! ribonucleoprotein complex import into nucleus -is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus -is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host -is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import -is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import +is_a: GO:0050658 {is_inferred="true"} ! RNA transport [Term] id: GO:0071169 ! establishment of protein localization to chromatin @@ -90844,10 +90852,9 @@ [Term] id: GO:1990236 ! proteasome core complex import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus -is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:0006913 {is_inferred="true"} ! nucleocytoplasmic transport is_a: GO:0031503 {is_inferred="true"} ! protein complex localization is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import -is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import [Term] id: GO:1990237 ! sequestration of proteasome core complex in proteasome storage granule ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41900) +++ go_inferences.obo (working copy) @@ -61215,6 +61215,11 @@ is_a: GO:1904776 {is_inferred="true"} ! regulation of protein localization to cell cortex [Term] +id: GO:0106012 ! positive regulation of protein localization to medial cortex +is_a: GO:0106011 {is_inferred="true"} ! regulation of protein localization to medial cortex +is_a: GO:1904778 {is_inferred="true"} ! positive regulation of protein localization to cell cortex + +[Term] id: GO:0106014 ! regulation of inflammatory response to wounding is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response is_a: GO:1903034 {is_inferred="true"} ! regulation of response to wounding @@ -61450,6 +61455,15 @@ is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] +id: GO:0120046 ! regulation of protein localization to medial cortical node +is_a: GO:0106011 {is_inferred="true"} ! regulation of protein localization to medial cortex + +[Term] +id: GO:0120047 ! positive regulation of protein localization to medial cortical node +is_a: GO:0106012 {is_inferred="true"} ! positive regulation of protein localization to medial cortex +is_a: GO:0120046 {is_inferred="true"} ! regulation of protein localization to medial cortical node + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41882) +++ go_inferences.obo (working copy) @@ -8667,6 +8667,7 @@ [Term] id: GO:0008333 ! endosome to lysosome transport is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport [Term] @@ -35592,6 +35593,8 @@ [Term] id: GO:0045324 ! late endosome to vacuole transport +is_a: GO:0007034 {is_inferred="true"} ! vacuolar transport +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport [Term] @@ -49217,6 +49220,10 @@ is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion [Term] +id: GO:0061764 ! late endosome to lysosome transport via multivesicular body sorting pathway +is_a: GO:0045324 {is_inferred="true"} ! late endosome to vacuole transport + +[Term] id: GO:0061768 ! magnesium:sodium antiporter activity is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity @@ -59802,7 +59809,6 @@ [Term] id: GO:0098943 ! neurotransmitter receptor transport, postsynaptic endosome to lysosome is_a: GO:0008333 {is_inferred="true"} ! endosome to lysosome transport -is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0061462 {is_inferred="true"} ! protein localization to lysosome is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport @@ -75361,8 +75367,8 @@ [Term] id: GO:1902774 ! late endosome to lysosome transport -is_a: GO:0008333 {is_inferred="true"} ! endosome to lysosome transport -is_a: GO:0045324 {is_inferred="true"} ! late endosome to vacuole transport +is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0016197 {is_inferred="true"} ! endosomal transport [Term] id: GO:1902775 ! mitochondrial large ribosomal subunit assembly ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41877) +++ go_inferences.obo (working copy) @@ -49402,6 +49402,23 @@ is_a: GO:0090394 {is_inferred="true"} ! negative regulation of excitatory postsynaptic potential [Term] +id: GO:0061888 ! regulation of astrocyte activation +is_a: GO:0048710 {is_inferred="true"} ! regulation of astrocyte differentiation +is_a: GO:0050865 {is_inferred="true"} ! regulation of cell activation + +[Term] +id: GO:0061889 ! negative regulation of astrocyte activation +is_a: GO:0048712 {is_inferred="true"} ! negative regulation of astrocyte differentiation +is_a: GO:0050866 {is_inferred="true"} ! negative regulation of cell activation +is_a: GO:0061888 {is_inferred="true"} ! regulation of astrocyte activation + +[Term] +id: GO:0061890 ! positive regulation of astrocyte activation +is_a: GO:0048711 {is_inferred="true"} ! positive regulation of astrocyte differentiation +is_a: GO:0050867 {is_inferred="true"} ! positive regulation of cell activation +is_a: GO:0061888 {is_inferred="true"} ! regulation of astrocyte activation + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41875) +++ go_inferences.obo (working copy) @@ -1281,9 +1281,10 @@ is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity [Term] -id: GO:0001407 ! glycerophosphodiester transport +id: GO:0001407 ! glycerophosphodiester transmembrane transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0001408 ! guanine nucleotide transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41816) +++ go_inferences.obo (working copy) @@ -49387,6 +49387,20 @@ is_a: GO:0072583 {is_inferred="true"} ! clathrin-dependent endocytosis [Term] +id: GO:0061884 ! regulation of mini excitatory postsynaptic potential +is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential + +[Term] +id: GO:0061885 ! positive regulation of mini excitatory postsynaptic potential +is_a: GO:0061884 {is_inferred="true"} ! regulation of mini excitatory postsynaptic potential +is_a: GO:2000463 {is_inferred="true"} ! positive regulation of excitatory postsynaptic potential + +[Term] +id: GO:0061886 ! negative regulation of mini excitatory postsynaptic potential +is_a: GO:0061884 {is_inferred="true"} ! regulation of mini excitatory postsynaptic potential +is_a: GO:0090394 {is_inferred="true"} ! negative regulation of excitatory postsynaptic potential + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41814) +++ go_inferences.obo (working copy) @@ -49366,6 +49366,27 @@ is_a: GO:0061873 {is_inferred="true"} ! regulation of hepatic stellate cell contraction [Term] +id: GO:0061880 ! regulation of anterograde axonal transport of mitochondrion +is_a: GO:1902513 {is_inferred="true"} ! regulation of organelle transport along microtubule + +[Term] +id: GO:0061881 ! positive regulation of anterograde axonal transport of mitochondrion +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport +is_a: GO:0051272 {is_inferred="true"} ! positive regulation of cellular component movement +is_a: GO:0061880 {is_inferred="true"} ! regulation of anterograde axonal transport of mitochondrion + +[Term] +id: GO:0061882 ! negative regulation of anterograde axonal transport of mitochondrion +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport +is_a: GO:0051271 {is_inferred="true"} ! negative regulation of cellular component movement +is_a: GO:0061880 {is_inferred="true"} ! regulation of anterograde axonal transport of mitochondrion + +[Term] +id: GO:0061883 ! clathrin-dependent endocytosis involved in vitellogenesis +is_a: GO:0022414 {is_inferred="true"} ! reproductive process +is_a: GO:0072583 {is_inferred="true"} ! clathrin-dependent endocytosis + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41738) +++ go_inferences.obo (working copy) @@ -7695,7 +7695,6 @@ [Term] id: GO:0006851 ! mitochondrial calcium ion transmembrane transport is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0006853 ! carnitine shuttle @@ -19986,7 +19985,6 @@ id: GO:0030150 ! protein import into mitochondrial matrix is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0030151 ! molybdenum ion binding @@ -30434,6 +30432,7 @@ is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transmembrane transport is_a: GO:0060401 {is_inferred="true"} ! cytosolic calcium ion transport is_a: GO:0070509 {is_inferred="true"} ! calcium ion import +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0036502 ! Derlin-1-VIMP complex @@ -32187,7 +32186,6 @@ id: GO:0042776 ! mitochondrial ATP synthesis coupled proton transport is_a: GO:0015986 {is_inferred="true"} ! ATP synthesis coupled proton transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0042780 ! tRNA 3'-end processing @@ -35112,7 +35110,6 @@ [Term] id: GO:0045039 ! protein import into mitochondrial inner membrane -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0044743 {is_inferred="true"} ! protein transmembrane import into intracellular organelle is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -35121,13 +35118,11 @@ id: GO:0045040 ! protein import into mitochondrial outer membrane is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0045041 ! protein import into mitochondrial intermembrane space is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0045046 ! protein import into peroxisome membrane @@ -57451,7 +57446,6 @@ [Term] id: GO:0090374 ! oligopeptide export from mitochondrion is_a: GO:0035672 {is_inferred="true"} ! oligopeptide transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0090379 ! secondary cell wall biogenesis involved in seed trichome differentiation @@ -61427,7 +61421,6 @@ is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0140025 ! contractile vacuole tethering involved in discharge @@ -73457,7 +73450,6 @@ id: GO:1902361 ! mitochondrial pyruvate transmembrane transport is_a: GO:0006850 {is_inferred="true"} ! mitochondrial pyruvate transport is_a: GO:1901475 {is_inferred="true"} ! pyruvate transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1902363 ! regulation of protein localization to spindle pole body @@ -85594,7 +85586,6 @@ is_a: GO:0015884 {is_inferred="true"} ! folic acid transport is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1904948 ! midbrain dopaminergic neuron differentiation @@ -85768,7 +85759,6 @@ is_a: GO:0015816 {is_inferred="true"} ! glycine transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1904984 ! regulation of quinolinate biosynthetic process @@ -89355,7 +89345,6 @@ [Term] id: GO:1905743 ! mitochondrial calcium uptake involved in negative regulation of presynaptic cytosolic calcium concentration is_a: GO:0036444 {is_inferred="true"} ! mitochondrial calcium uptake -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell [Term] id: GO:1905744 ! regulation of mRNA cis splicing, via spliceosome @@ -91038,6 +91027,7 @@ is_a: GO:0006864 {is_inferred="true"} ! pyrimidine nucleotide transport is_a: GO:0072531 {is_inferred="true"} ! pyrimidine-containing compound transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91070,7 +91060,6 @@ [Term] id: GO:1990540 ! mitochondrial manganese ion transmembrane transport is_a: GO:0071421 {is_inferred="true"} ! manganese ion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990541 ! mitochondrial citrate transmembrane transport @@ -91084,7 +91073,6 @@ [Term] id: GO:1990543 ! mitochondrial S-adenosyl-L-methionine transmembrane transport is_a: GO:1901962 {is_inferred="true"} ! S-adenosyl-L-methionine transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990544 ! mitochondrial ATP transmembrane transport @@ -91092,7 +91080,6 @@ is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990545 ! mitochondrial thiamine pyrophosphate transmembrane transport @@ -91100,74 +91087,60 @@ is_a: GO:0072531 {is_inferred="true"} ! pyrimidine-containing compound transmembrane transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990546 ! mitochondrial tricarboxylic acid transmembrane transport is_a: GO:0035674 {is_inferred="true"} ! tricarboxylic acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990547 ! mitochondrial phosphate ion transmembrane transport is_a: GO:0035435 {is_inferred="true"} ! phosphate ion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990548 ! mitochondrial FAD transmembrane transport is_a: GO:0035350 {is_inferred="true"} ! FAD transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990549 ! mitochondrial NAD transmembrane transport is_a: GO:0035352 {is_inferred="true"} ! NAD transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990550 ! mitochondrial alpha-ketoglutarate transmembrane transport is_a: GO:0015742 {is_inferred="true"} ! alpha-ketoglutarate transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990551 ! mitochondrial 2-oxoadipate transmembrane transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990553 ! mitochondrial 5'-adenylyl sulfate transmembrane transport is_a: GO:1902558 {is_inferred="true"} ! 5'-adenylyl sulfate transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990554 ! mitochondrial 3'-phospho-5'-adenylyl sulfate transmembrane transport is_a: GO:1902559 {is_inferred="true"} ! 3'-phospho-5'-adenylyl sulfate transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990555 ! mitochondrial oxaloacetate transmembrane transport is_a: GO:1902356 {is_inferred="true"} ! oxaloacetate(2-) transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990556 ! mitochondrial isopropylmalate transmembrane transport is_a: GO:1902357 {is_inferred="true"} ! 2-isopropylmalate(2-) transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990557 ! mitochondrial sulfate transmembrane transport is_a: GO:1902358 {is_inferred="true"} ! sulfate transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990558 ! mitochondrial malonate(1-) transmembrane transport is_a: GO:1901553 {is_inferred="true"} ! malonic acid transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990559 ! mitochondrial coenzyme A transmembrane transport is_a: GO:0035349 {is_inferred="true"} ! coenzyme A transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990563 ! extracellular exosome complex @@ -91197,7 +91170,6 @@ id: GO:1990575 ! mitochondrial L-ornithine transmembrane transport is_a: GO:0000066 {is_inferred="true"} ! mitochondrial ornithine transport is_a: GO:1903352 {is_inferred="true"} ! L-ornithine transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990578 ! perinuclear endoplasmic reticulum membrane @@ -91247,7 +91219,6 @@ id: GO:1990614 ! mitochondrial magnesium ion transmembrane transport is_a: GO:0045016 {is_inferred="true"} ! mitochondrial magnesium ion transport is_a: GO:1903830 {is_inferred="true"} ! magnesium ion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990616 ! magnesium ion export from mitochondrion @@ -91545,7 +91516,6 @@ id: GO:1990925 ! mitochondrial iron ion transmembrane transport is_a: GO:0034755 {is_inferred="true"} ! iron ion transmembrane transport is_a: GO:0048250 {is_inferred="true"} ! mitochondrial iron ion transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990953 ! intramanchette transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41722) +++ go_inferences.obo (working copy) @@ -61250,6 +61250,10 @@ is_a: GO:1903020 {is_inferred="true"} ! positive regulation of glycoprotein metabolic process [Term] +id: GO:0110016 ! B-WICH complex +is_a: GO:0044452 {is_inferred="true"} ! nucleolar part + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41661) +++ go_inferences.obo (working copy) @@ -61193,6 +61193,20 @@ is_a: GO:0106020 {is_inferred="true"} ! regulation of vesicle docking [Term] +id: GO:0106023 ! regulation of pupariation +is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development + +[Term] +id: GO:0106024 ! negative regulation of pupariation +is_a: GO:0048581 {is_inferred="true"} ! negative regulation of post-embryonic development +is_a: GO:0106023 {is_inferred="true"} ! regulation of pupariation + +[Term] +id: GO:0106025 ! positive regulation of pupariation +is_a: GO:0048582 {is_inferred="true"} ! positive regulation of post-embryonic development +is_a: GO:0106023 {is_inferred="true"} ! regulation of pupariation + +[Term] id: GO:0110001 ! toxin-antitoxin complex is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41652) +++ go_inferences.obo (working copy) @@ -61420,6 +61420,10 @@ is_a: GO:0009987 {is_inferred="true"} ! cellular process [Term] +id: GO:0140039 ! cell-cell adhesion in response to extracellular stimulus +is_a: GO:0016337 {is_inferred="true"} ! single organismal cell-cell adhesion + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41625) +++ go_inferences.obo (working copy) @@ -42242,7 +42242,7 @@ is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process [Term] -id: GO:0050435 ! beta-amyloid metabolic process +id: GO:0050435 ! amyloid-beta metabolic process is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process [Term] @@ -62470,18 +62470,18 @@ is_a: GO:0071526 {is_inferred="true"} ! semaphorin-plexin signaling pathway [Term] -id: GO:1900221 ! regulation of beta-amyloid clearance +id: GO:1900221 ! regulation of amyloid-beta clearance is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process [Term] -id: GO:1900222 ! negative regulation of beta-amyloid clearance +id: GO:1900222 ! negative regulation of amyloid-beta clearance is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1900221 {is_inferred="true"} ! regulation of beta-amyloid clearance +is_a: GO:1900221 {is_inferred="true"} ! regulation of amyloid-beta clearance [Term] -id: GO:1900223 ! positive regulation of beta-amyloid clearance +id: GO:1900223 ! positive regulation of amyloid-beta clearance is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1900221 {is_inferred="true"} ! regulation of beta-amyloid clearance +is_a: GO:1900221 {is_inferred="true"} ! regulation of amyloid-beta clearance [Term] id: GO:1900224 ! positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry @@ -71662,14 +71662,14 @@ is_a: GO:0006468 {is_inferred="true"} ! protein phosphorylation [Term] -id: GO:1902003 ! regulation of beta-amyloid formation +id: GO:1902003 ! regulation of amyloid-beta formation is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process is_a: GO:1902991 {is_inferred="true"} ! regulation of amyloid precursor protein catabolic process [Term] -id: GO:1902004 ! positive regulation of beta-amyloid formation +id: GO:1902004 ! positive regulation of amyloid-beta formation is_a: GO:0034250 {is_inferred="true"} ! positive regulation of cellular amide metabolic process -is_a: GO:1902003 {is_inferred="true"} ! regulation of beta-amyloid formation +is_a: GO:1902003 {is_inferred="true"} ! regulation of amyloid-beta formation is_a: GO:1902993 {is_inferred="true"} ! positive regulation of amyloid precursor protein catabolic process [Term] @@ -73764,9 +73764,9 @@ is_a: GO:1902427 {is_inferred="true"} ! regulation of water channel activity [Term] -id: GO:1902430 ! negative regulation of beta-amyloid formation +id: GO:1902430 ! negative regulation of amyloid-beta formation is_a: GO:0034249 {is_inferred="true"} ! negative regulation of cellular amide metabolic process -is_a: GO:1902003 {is_inferred="true"} ! regulation of beta-amyloid formation +is_a: GO:1902003 {is_inferred="true"} ! regulation of amyloid-beta formation is_a: GO:1902992 {is_inferred="true"} ! negative regulation of amyloid precursor protein catabolic process [Term] @@ -84105,13 +84105,13 @@ is_a: GO:1904643 {is_inferred="true"} ! response to curcumin [Term] -id: GO:1904645 ! response to beta-amyloid +id: GO:1904645 ! response to amyloid-beta is_a: GO:1901652 {is_inferred="true"} ! response to peptide [Term] -id: GO:1904646 ! cellular response to beta-amyloid +id: GO:1904646 ! cellular response to amyloid-beta is_a: GO:1901653 {is_inferred="true"} ! cellular response to peptide -is_a: GO:1904645 {is_inferred="true"} ! response to beta-amyloid +is_a: GO:1904645 {is_inferred="true"} ! response to amyloid-beta [Term] id: GO:1904647 ! response to rotenone ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41469) +++ go_inferences.obo (working copy) @@ -6537,11 +6537,11 @@ is_a: GO:0016071 {is_inferred="true"} ! mRNA metabolic process [Term] -id: GO:0006407 ! rRNA export from nucleus -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +id: GO:0006406 ! mRNA export from nucleus +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] -id: GO:0006408 ! snRNA export from nucleus +id: GO:0006407 ! rRNA export from nucleus is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -6961,7 +6961,7 @@ is_a: GO:0017038 {is_inferred="true"} ! protein import is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle -is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0006608 ! snRNP protein import into nucleus @@ -6968,6 +6968,10 @@ is_a: GO:0071167 {is_inferred="true"} ! ribonucleoprotein complex import into nucleus [Term] +id: GO:0006611 ! protein export from nucleus +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host + +[Term] id: GO:0006612 ! protein targeting to membrane is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane @@ -22798,7 +22802,7 @@ [Term] id: GO:0032066 ! nucleolus to nucleoplasm transport -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0032068 ! Type IV site-specific deoxyribonuclease complex @@ -31241,7 +31245,6 @@ [Term] id: GO:0042306 ! regulation of protein import into nucleus -is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport is_a: GO:1900180 {is_inferred="true"} ! regulation of protein localization to nucleus is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting is_a: GO:1904589 {is_inferred="true"} ! regulation of protein import @@ -31249,7 +31252,6 @@ [Term] id: GO:0042307 ! positive regulation of protein import into nucleus is_a: GO:0042306 {is_inferred="true"} ! regulation of protein import into nucleus -is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport is_a: GO:1900182 {is_inferred="true"} ! positive regulation of protein localization to nucleus is_a: GO:1904591 {is_inferred="true"} ! positive regulation of protein import @@ -31257,7 +31259,6 @@ [Term] id: GO:0042308 ! negative regulation of protein import into nucleus is_a: GO:0042306 {is_inferred="true"} ! regulation of protein import into nucleus -is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport is_a: GO:1900181 {is_inferred="true"} ! negative regulation of protein localization to nucleus is_a: GO:1904590 {is_inferred="true"} ! negative regulation of protein import @@ -34624,6 +34625,11 @@ is_a: GO:0044468 {is_inferred="true"} ! envenomation resulting in modulation of blood coagulation in other organism [Term] +id: GO:0044376 ! RNA polymerase II complex import to nucleus +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import + +[Term] id: GO:0044379 ! protein localization to actin cortical patch is_a: GO:0072697 {is_inferred="true"} ! protein localization to cell cortex is_a: GO:1903119 {is_inferred="true"} ! protein localization to actin cytoskeleton @@ -34892,7 +34898,6 @@ [Term] id: GO:0044744 ! protein targeting to nucleus is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle [Term] @@ -40520,7 +40525,6 @@ [Term] id: GO:0046752 ! viral capsid precursor transport to host cell nucleus is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host -is_a: GO:0075733 {is_inferred="true"} ! intracellular transport of virus [Term] id: GO:0046760 ! viral budding from Golgi membrane @@ -40561,25 +40565,27 @@ [Term] id: GO:0046822 ! regulation of nucleocytoplasmic transport -is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport +is_a: GO:0051049 {is_inferred="true"} ! regulation of transport [Term] id: GO:0046823 ! negative regulation of nucleocytoplasmic transport -is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport +is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport [Term] id: GO:0046824 ! positive regulation of nucleocytoplasmic transport -is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport +is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport [Term] id: GO:0046825 ! regulation of protein export from nucleus is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport +is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0046826 ! negative regulation of protein export from nucleus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport @@ -40586,6 +40592,7 @@ [Term] id: GO:0046827 ! positive regulation of protein export from nucleus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport @@ -43432,7 +43439,7 @@ [Term] id: GO:0051169 ! nuclear transport -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:0006810 {is_inferred="true"} ! transport [Term] id: GO:0051174 ! regulation of phosphorus metabolic process @@ -44247,17 +44254,29 @@ is_a: GO:0051516 {is_inferred="true"} ! regulation of bipolar cell growth [Term] +id: GO:0051531 ! NFAT protein import into nucleus +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import +is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import + +[Term] id: GO:0051532 ! regulation of NFAT protein import into nucleus is_a: GO:0042990 {is_inferred="true"} ! regulation of transcription factor import into nucleus +is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism +is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport [Term] id: GO:0051533 ! positive regulation of NFAT protein import into nucleus is_a: GO:0042993 {is_inferred="true"} ! positive regulation of transcription factor import into nucleus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus [Term] id: GO:0051534 ! negative regulation of NFAT protein import into nucleus is_a: GO:0042992 {is_inferred="true"} ! negative regulation of transcription factor import into nucleus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport is_a: GO:0051532 {is_inferred="true"} ! regulation of NFAT protein import into nucleus [Term] @@ -51714,6 +51733,9 @@ id: GO:0071167 ! ribonucleoprotein complex import into nucleus is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host +is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import +is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import [Term] id: GO:0071169 ! establishment of protein localization to chromatin @@ -55511,12 +55533,8 @@ is_a: GO:1903665 {is_inferred="true"} ! negative regulation of asexual reproduction [Term] -id: GO:0075521 ! microtubule-dependent intracellular transport of viral material towards nucleus -is_a: GO:0051169 {is_inferred="true"} ! nuclear transport - -[Term] id: GO:0075733 ! intracellular transport of virus -is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport +is_a: GO:0046794 {is_inferred="true"} ! transport of virus [Term] id: GO:0080003 ! thalianol metabolic process @@ -67903,18 +67921,18 @@ [Term] id: GO:1901252 ! regulation of intracellular transport of viral material -is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport +is_a: GO:0051049 {is_inferred="true"} ! regulation of transport is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle [Term] id: GO:1901253 ! negative regulation of intracellular transport of viral material -is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport +is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:1901252 {is_inferred="true"} ! regulation of intracellular transport of viral material is_a: GO:1903901 {is_inferred="true"} ! negative regulation of viral life cycle [Term] id: GO:1901254 ! positive regulation of intracellular transport of viral material -is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport +is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:1901252 {is_inferred="true"} ! regulation of intracellular transport of viral material is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle @@ -74447,13 +74465,13 @@ [Term] id: GO:1902593 ! single-organism nuclear import +is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0051170 {is_inferred="true"} ! nuclear import -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1902594 ! multi-organism nuclear import +is_a: GO:0044766 {is_inferred="true"} ! multi-organism transport is_a: GO:0051170 {is_inferred="true"} ! nuclear import -is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport [Term] id: GO:1902595 ! regulation of DNA replication origin binding @@ -90742,7 +90760,10 @@ [Term] id: GO:1990236 ! proteasome core complex import into nucleus is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host is_a: GO:0031503 {is_inferred="true"} ! protein complex localization +is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import +is_a: GO:1902594 {is_inferred="true"} ! multi-organism nuclear import [Term] id: GO:1990237 ! sequestration of proteasome core complex in proteasome storage granule ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41460) +++ go_inferences.obo (working copy) @@ -28616,6 +28616,11 @@ is_a: GO:0030575 {is_inferred="true"} ! nuclear body organization [Term] +id: GO:0035064 ! methylated histone binding +is_a: GO:0042393 {is_inferred="true"} ! histone binding +is_a: GO:0140034 {is_inferred="true"} ! methylation-dependent protein binding + +[Term] id: GO:0035065 ! regulation of histone acetylation is_a: GO:0031056 {is_inferred="true"} ! regulation of histone modification is_a: GO:2000756 {is_inferred="true"} ! regulation of peptidyl-lysine acetylation @@ -49063,6 +49068,11 @@ is_a: GO:0071168 {is_inferred="true"} ! protein localization to chromatin [Term] +id: GO:0061649 ! ubiquitin modification-dependent histone binding +is_a: GO:0042393 {is_inferred="true"} ! histone binding +is_a: GO:0140036 {is_inferred="true"} ! ubiquitin-dependent protein binding + +[Term] id: GO:0061672 ! glutathione hydrolase complex is_a: GO:1905368 {is_inferred="true"} ! peptidase complex @@ -50435,6 +50445,11 @@ is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport [Term] +id: GO:0070577 ! lysine-acetylated histone binding +is_a: GO:0042393 {is_inferred="true"} ! histone binding +is_a: GO:0140033 {is_inferred="true"} ! acetylation-dependent protein binding + +[Term] id: GO:0070578 ! RISC-loading complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41423) +++ go_inferences.obo (working copy) @@ -25899,7 +25899,7 @@ [Term] id: GO:0033162 ! melanosome membrane -is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle +is_a: GO:0090741 {is_inferred="true"} ! pigment granule membrane is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] @@ -57822,6 +57822,15 @@ is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component [Term] +id: GO:0090740 ! integral component of pigment granule membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane +is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part + +[Term] +id: GO:0090741 ! pigment granule membrane +is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41413) +++ go_inferences.obo (working copy) @@ -1749,6 +1749,7 @@ id: GO:0001928 ! regulation of exocyst assembly is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly +is_a: GO:0106020 {is_inferred="true"} ! regulation of vesicle docking [Term] id: GO:0001929 ! negative regulation of exocyst assembly @@ -1755,6 +1756,7 @@ is_a: GO:0001928 {is_inferred="true"} ! regulation of exocyst assembly is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly is_a: GO:0045920 {is_inferred="true"} ! negative regulation of exocytosis +is_a: GO:0106021 {is_inferred="true"} ! negative regulation of vesicle docking [Term] id: GO:0001930 ! positive regulation of exocyst assembly @@ -1761,6 +1763,7 @@ is_a: GO:0001928 {is_inferred="true"} ! regulation of exocyst assembly is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly is_a: GO:0045921 {is_inferred="true"} ! positive regulation of exocytosis +is_a: GO:0106022 {is_inferred="true"} ! positive regulation of vesicle docking [Term] id: GO:0001931 ! uropod @@ -61132,6 +61135,22 @@ is_a: GO:1903036 {is_inferred="true"} ! positive regulation of response to wounding [Term] +id: GO:0106020 ! regulation of vesicle docking +is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport + +[Term] +id: GO:0106021 ! negative regulation of vesicle docking +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:0106020 {is_inferred="true"} ! regulation of vesicle docking + +[Term] +id: GO:0106022 ! positive regulation of vesicle docking +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:0106020 {is_inferred="true"} ! regulation of vesicle docking + +[Term] id: GO:0110001 ! toxin-antitoxin complex is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41391) +++ go_inferences.obo (working copy) @@ -61306,6 +61306,18 @@ is_a: GO:0120040 {is_inferred="true"} ! regulation of macrophage proliferation [Term] +id: GO:0120043 ! stereocilium shaft +is_a: GO:0044422 {is_inferred="true"} ! organelle part +is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] +id: GO:0120044 ! stereocilium base +is_a: GO:0044422 {is_inferred="true"} ! organelle part +is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41384) +++ go_inferences.obo (working copy) @@ -1742,6 +1742,10 @@ is_a: GO:0045579 {is_inferred="true"} ! positive regulation of B cell differentiation [Term] +id: GO:0001927 ! exocyst assembly +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] id: GO:0001928 ! regulation of exocyst assembly is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly @@ -2496,13 +2500,31 @@ [Term] id: GO:0002552 ! serotonin secretion by mast cell +is_a: GO:0140029 {is_inferred="true"} ! exocytic process is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0002553 ! histamine secretion by mast cell +is_a: GO:0140029 {is_inferred="true"} ! exocytic process is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] +id: GO:0002554 ! serotonin secretion by platelet +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] +id: GO:0002555 ! histamine secretion by platelet +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] +id: GO:0002556 ! serotonin secretion by basophil +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] +id: GO:0002557 ! histamine secretion by basophil +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] id: GO:0002575 ! basophil chemotaxis is_a: GO:0071621 {is_inferred="true"} ! granulocyte chemotaxis @@ -7773,6 +7795,7 @@ [Term] id: GO:0006904 ! vesicle docking involved in exocytosis is_a: GO:0048278 {is_inferred="true"} ! vesicle docking +is_a: GO:0140029 {is_inferred="true"} ! exocytic process [Term] id: GO:0006910 ! phagocytosis, recognition @@ -16199,6 +16222,7 @@ id: GO:0016080 ! synaptic vesicle targeting is_a: GO:0006903 {is_inferred="true"} ! vesicle targeting is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission +is_a: GO:0140029 {is_inferred="true"} ! exocytic process [Term] id: GO:0016081 ! synaptic vesicle docking @@ -16207,6 +16231,7 @@ [Term] id: GO:0016082 ! synaptic vesicle priming is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission +is_a: GO:0140029 {is_inferred="true"} ! exocytic process [Term] id: GO:0016090 ! prenol metabolic process @@ -19676,6 +19701,10 @@ is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus [Term] +id: GO:0022402 ! cell cycle process +is_a: GO:0009987 {is_inferred="true"} ! cellular process + +[Term] id: GO:0022604 ! regulation of cell morphogenesis is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization @@ -49173,6 +49202,10 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:0061789 ! dense core granule priming +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] id: GO:0061792 ! secretory granule maturation is_a: GO:0021700 {is_inferred="true"} ! developmental maturation is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization @@ -50358,6 +50391,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0070560 ! protein secretion by platelet +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] id: GO:0070562 ! regulation of vitamin D receptor signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels @@ -57679,6 +57716,7 @@ [Term] id: GO:0090522 ! vesicle tethering involved in exocytosis is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering +is_a: GO:0140029 {is_inferred="true"} ! exocytic process [Term] id: GO:0090525 ! regulation of glycolysis involved in cellular glucose homeostasis @@ -59381,6 +59419,7 @@ [Term] id: GO:0098866 ! multivesicular body fusion to apical plasma membrane is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion +is_a: GO:0140029 {is_inferred="true"} ! exocytic process [Term] id: GO:0098867 ! intramembranous bone growth @@ -59422,6 +59461,7 @@ [Term] id: GO:0098881 ! exocytic insertion of neurotransmitter receptor to plasma membrane +is_a: GO:0006887 {is_inferred="true"} ! exocytosis is_a: GO:0051668 {is_inferred="true"} ! localization within membrane is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -60338,6 +60378,10 @@ is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] +id: GO:0099500 ! vesicle fusion to plasma membrane +is_a: GO:0140029 {is_inferred="true"} ! exocytic process + +[Term] id: GO:0099501 ! exocytic vesicle membrane is_a: GO:0030658 {is_inferred="true"} ! transport vesicle membrane @@ -61299,6 +61343,10 @@ is_a: GO:0006903 {is_inferred="true"} ! vesicle targeting [Term] +id: GO:0140029 ! exocytic process +is_a: GO:0009987 {is_inferred="true"} ! cellular process + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41305) +++ go_inferences.obo (working copy) @@ -7673,6 +7673,10 @@ is_a: GO:1902001 {is_inferred="true"} ! fatty acid transmembrane transport [Term] +id: GO:0006855 ! drug transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:0006857 ! oligopeptide transport is_a: GO:0015833 {is_inferred="true"} ! peptide transport @@ -13827,7 +13831,8 @@ [Term] id: GO:0014808 ! release of sequestered calcium ion into cytosol by sarcoplasmic reticulum -is_a: GO:1903514 {is_inferred="true"} ! calcium ion transport from endoplasmic reticulum to cytosol +is_a: GO:0070296 {is_inferred="true"} ! sarcoplasmic reticulum calcium ion transport +is_a: GO:1903514 {is_inferred="true"} ! release of sequestered calcium ion into cytosol by endoplasmic reticulum [Term] id: GO:0014813 ! skeletal muscle satellite cell commitment @@ -30000,12 +30005,12 @@ [Term] id: GO:0036084 ! GDP-fucose import into endoplasmic reticulum lumen is_a: GO:0015783 {is_inferred="true"} ! GDP-fucose transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:0090480 {is_inferred="true"} ! purine nucleotide-sugar transmembrane transport [Term] id: GO:0036085 ! GDP-fucose import into Golgi lumen is_a: GO:0015783 {is_inferred="true"} ! GDP-fucose transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:0090480 {is_inferred="true"} ! purine nucleotide-sugar transmembrane transport [Term] id: GO:0036087 ! glutathione synthase complex @@ -43490,6 +43495,14 @@ is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process [Term] +id: GO:0051208 ! sequestering of calcium ion +is_a: GO:0051235 {is_inferred="true"} ! maintenance of location + +[Term] +id: GO:0051209 ! release of sequestered calcium ion into cytosol +is_a: GO:0097553 {is_inferred="true"} ! calcium ion transmembrane import into cytosol + +[Term] id: GO:0051212 ! vanadium ion binding is_a: GO:0046914 {is_inferred="true"} ! transition metal ion binding @@ -43587,7 +43600,6 @@ id: GO:0051279 ! regulation of release of sequestered calcium ion into cytosol is_a: GO:0010522 {is_inferred="true"} ! regulation of calcium ion transport into cytosol is_a: GO:0051282 {is_inferred="true"} ! regulation of sequestering of calcium ion -is_a: GO:0090279 {is_inferred="true"} ! regulation of calcium ion import is_a: GO:1903169 {is_inferred="true"} ! regulation of calcium ion transmembrane transport [Term] @@ -43596,7 +43608,6 @@ is_a: GO:0051279 {is_inferred="true"} ! regulation of release of sequestered calcium ion into cytosol is_a: GO:0051283 {is_inferred="true"} ! negative regulation of sequestering of calcium ion is_a: GO:0051284 {is_inferred="true"} ! positive regulation of sequestering of calcium ion -is_a: GO:0090281 {is_inferred="true"} ! negative regulation of calcium ion import is_a: GO:1903170 {is_inferred="true"} ! negative regulation of calcium ion transmembrane transport [Term] @@ -43603,7 +43614,6 @@ id: GO:0051281 ! positive regulation of release of sequestered calcium ion into cytosol is_a: GO:0010524 {is_inferred="true"} ! positive regulation of calcium ion transport into cytosol is_a: GO:0051279 {is_inferred="true"} ! regulation of release of sequestered calcium ion into cytosol -is_a: GO:0090280 {is_inferred="true"} ! positive regulation of calcium ion import is_a: GO:1904427 {is_inferred="true"} ! positive regulation of calcium ion transmembrane transport [Term] @@ -48810,9 +48820,9 @@ is_a: GO:0060563 {is_inferred="true"} ! neuroepithelial cell differentiation [Term] -id: GO:0061454 ! Golgi calcium ion export +id: GO:0061454 ! release of sequestered calcium ion into cytosol by Golgi +is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol is_a: GO:0061856 {is_inferred="true"} ! Golgi calcium ion transmembrane transport -is_a: GO:1901660 {is_inferred="true"} ! calcium ion export [Term] id: GO:0061455 ! integral component of muscle cell projection membrane @@ -54423,11 +54433,15 @@ [Term] id: GO:0072530 ! purine-containing compound transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0072531 ! pyrimidine-containing compound transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0072536 ! interleukin-23 receptor complex @@ -57584,6 +57598,11 @@ is_a: GO:0090478 {is_inferred="true"} ! serine import [Term] +id: GO:0090480 ! purine nucleotide-sugar transmembrane transport +is_a: GO:0036079 {is_inferred="true"} ! purine nucleotide-sugar transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:0090494 ! dopamine uptake is_a: GO:0090493 {is_inferred="true"} ! catecholamine uptake @@ -58337,6 +58356,11 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0097553 ! calcium ion transmembrane import into cytosol +is_a: GO:0060402 {is_inferred="true"} ! calcium ion transport into cytosol +is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport + +[Term] id: GO:0097576 ! vacuole fusion is_a: GO:0048284 {is_inferred="true"} ! organelle fusion @@ -58946,6 +58970,7 @@ id: GO:0098703 ! calcium ion import across plasma membrane is_a: GO:0097553 {is_inferred="true"} ! calcium ion transmembrane import into cytosol is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane +is_a: GO:1902656 {is_inferred="true"} ! calcium ion import into cytosol [Term] id: GO:0098704 ! carbohydrate import across plasma membrane @@ -58971,6 +58996,7 @@ [Term] id: GO:0098708 ! glucose import across plasma membrane +is_a: GO:0098704 {is_inferred="true"} ! carbohydrate import across plasma membrane is_a: GO:1904659 {is_inferred="true"} ! glucose transmembrane transport [Term] @@ -60160,7 +60186,7 @@ [Term] id: GO:0099093 ! mitochondrial calcium release is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transmembrane transport -is_a: GO:0097553 {is_inferred="true"} ! calcium ion transmembrane import into cytosol +is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol is_a: GO:1901660 {is_inferred="true"} ! calcium ion export [Term] @@ -60520,6 +60546,7 @@ [Term] id: GO:0099585 ! release of sequestered calcium ion into presynaptic cytosol +is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol is_a: GO:0099533 {is_inferred="true"} ! positive regulation of presynaptic cytosolic calcium concentration [Term] @@ -78530,12 +78557,13 @@ is_a: GO:0097089 {is_inferred="true"} ! methyl-branched fatty acid metabolic process [Term] -id: GO:1903514 ! calcium ion transport from endoplasmic reticulum to cytosol -is_a: GO:0060402 {is_inferred="true"} ! calcium ion transport into cytosol +id: GO:1903514 ! release of sequestered calcium ion into cytosol by endoplasmic reticulum +is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol [Term] id: GO:1903515 ! calcium ion transport from cytosol to endoplasmic reticulum is_a: GO:0060401 {is_inferred="true"} ! cytosolic calcium ion transport +is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport [Term] id: GO:1903516 ! regulation of single strand break repair @@ -91010,6 +91038,11 @@ is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] +id: GO:1990570 ! GDP-mannose transmembrane transport +is_a: GO:0015784 {is_inferred="true"} ! GDP-mannose transport +is_a: GO:0090480 {is_inferred="true"} ! purine nucleotide-sugar transmembrane transport + +[Term] id: GO:1990573 ! potassium ion import across plasma membrane is_a: GO:0071805 {is_inferred="true"} ! potassium ion transmembrane transport is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane @@ -91040,7 +91073,6 @@ [Term] id: GO:1990591 ! asparagine transmembrane import into vacuole is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0090469 {is_inferred="true"} ! asparagine import is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41276) +++ go_inferences.obo (working copy) @@ -197,10 +197,6 @@ is_a: GO:0006605 {is_inferred="true"} ! protein targeting [Term] -id: GO:0000045 ! autophagosome assembly -is_a: GO:1905037 {is_inferred="true"} ! autophagosome organization - -[Term] id: GO:0000049 ! tRNA binding is_a: GO:0003723 {is_inferred="true"} ! RNA binding @@ -367,7 +363,6 @@ [Term] id: GO:0000147 ! actin cortical patch assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044396 {is_inferred="true"} ! actin cortical patch organization [Term] id: GO:0000148 ! 1,3-beta-D-glucan synthase complex @@ -1066,7 +1061,6 @@ [Term] id: GO:0000921 ! septin ring assembly -is_a: GO:0031106 {is_inferred="true"} ! septin ring organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -1432,9 +1426,7 @@ [Term] id: GO:0001675 ! acrosome assembly -is_a: GO:0033363 {is_inferred="true"} ! secretory granule organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0001676 ! long-chain fatty acid metabolic process @@ -1613,11 +1605,6 @@ is_a: GO:0051204 {is_inferred="true"} ! protein insertion into mitochondrial membrane [Term] -id: GO:0001845 ! phagolysosome assembly -is_a: GO:0007040 {is_inferred="true"} ! lysosome organization -is_a: GO:0016050 {is_inferred="true"} ! vesicle organization - -[Term] id: GO:0001868 ! regulation of complement activation, lectin pathway is_a: GO:0030449 {is_inferred="true"} ! regulation of complement activation is_a: GO:0045088 {is_inferred="true"} ! regulation of innate immune response @@ -7860,7 +7847,6 @@ [Term] id: GO:0007019 ! microtubule depolymerization -is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] @@ -7868,13 +7854,10 @@ is_a: GO:0031111 {is_inferred="true"} ! negative regulation of microtubule polymerization or depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization is_a: GO:1901880 {is_inferred="true"} ! negative regulation of protein depolymerization -is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0007027 ! negative regulation of axonemal microtubule depolymerization is_a: GO:0007026 {is_inferred="true"} ! negative regulation of microtubule depolymerization -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization -is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0007028 ! cytoplasm organization @@ -8199,7 +8182,6 @@ [Term] id: GO:0007287 ! Nebenkern assembly -is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -8340,7 +8322,6 @@ [Term] id: GO:0007416 ! synapse assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0050808 {is_inferred="true"} ! synapse organization [Term] id: GO:0007444 ! imaginal disc development @@ -13192,6 +13173,7 @@ [Term] id: GO:0010937 ! regulation of cytoplasmic microtubule depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0010938 ! cytoplasmic microtubule depolymerization @@ -20131,7 +20113,6 @@ [Term] id: GO:0030239 ! myofibril assembly is_a: GO:0070925 {is_inferred="true"} ! organelle assembly -is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:0030243 ! cellulose metabolic process @@ -20344,7 +20325,6 @@ [Term] id: GO:0030474 ! spindle pole body duplication is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0051300 {is_inferred="true"} ! spindle pole body organization [Term] id: GO:0030476 ! ascospore wall assembly @@ -21250,7 +21230,6 @@ [Term] id: GO:0031025 ! equatorial microtubule organizing center disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly -is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] @@ -21354,7 +21333,6 @@ [Term] id: GO:0031107 ! septin ring disassembly -is_a: GO:0031106 {is_inferred="true"} ! septin ring organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -21379,13 +21357,11 @@ id: GO:0031113 ! regulation of microtubule polymerization is_a: GO:0031110 {is_inferred="true"} ! regulation of microtubule polymerization or depolymerization is_a: GO:0032271 {is_inferred="true"} ! regulation of protein polymerization -is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0031114 ! regulation of microtubule depolymerization is_a: GO:0031110 {is_inferred="true"} ! regulation of microtubule polymerization or depolymerization is_a: GO:1901879 {is_inferred="true"} ! regulation of protein depolymerization -is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0031115 ! negative regulation of microtubule polymerization @@ -21392,7 +21368,6 @@ is_a: GO:0031111 {is_inferred="true"} ! negative regulation of microtubule polymerization or depolymerization is_a: GO:0031113 {is_inferred="true"} ! regulation of microtubule polymerization is_a: GO:0032272 {is_inferred="true"} ! negative regulation of protein polymerization -is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0031116 ! positive regulation of microtubule polymerization @@ -21399,7 +21374,6 @@ is_a: GO:0031112 {is_inferred="true"} ! positive regulation of microtubule polymerization or depolymerization is_a: GO:0031113 {is_inferred="true"} ! regulation of microtubule polymerization is_a: GO:0032273 {is_inferred="true"} ! positive regulation of protein polymerization -is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0031117 ! positive regulation of microtubule depolymerization @@ -21406,7 +21380,6 @@ is_a: GO:0031112 {is_inferred="true"} ! positive regulation of microtubule polymerization or depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization is_a: GO:1901881 {is_inferred="true"} ! positive regulation of protein depolymerization -is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0031122 ! cytoplasmic microtubule organization @@ -21604,6 +21577,7 @@ [Term] id: GO:0031272 ! regulation of pseudopodium assembly is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0031273 ! negative regulation of pseudopodium assembly @@ -25192,6 +25166,7 @@ is_a: GO:0007026 {is_inferred="true"} ! negative regulation of microtubule depolymerization is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process is_a: GO:0090224 {is_inferred="true"} ! regulation of spindle organization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0032934 ! sterol binding @@ -28580,10 +28555,6 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] -id: GO:0035045 ! sperm plasma membrane disassembly -is_a: GO:0007009 {is_inferred="true"} ! plasma membrane organization - -[Term] id: GO:0035046 ! pronuclear migration is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -30282,10 +30253,6 @@ is_a: GO:0071418 {is_inferred="true"} ! cellular response to amine stimulus [Term] -id: GO:0036258 ! multivesicular body assembly -is_a: GO:0036257 {is_inferred="true"} ! multivesicular body organization - -[Term] id: GO:0036266 ! Cdc48p-Npl4p-Vms1p AAA ATPase complex is_a: GO:0098799 {is_inferred="true"} ! outer mitochondrial membrane protein complex @@ -33033,7 +33000,6 @@ [Term] id: GO:0043149 ! stress fiber assembly is_a: GO:0030038 {is_inferred="true"} ! contractile actin filament bundle assembly -is_a: GO:0031032 {is_inferred="true"} ! actomyosin structure organization [Term] id: GO:0043150 ! DNA synthesis involved in double-strand break repair via homologous recombination @@ -35015,10 +34981,6 @@ is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] -id: GO:0044854 ! plasma membrane raft assembly -is_a: GO:0044857 {is_inferred="true"} ! plasma membrane raft organization - -[Term] id: GO:0044859 ! protein insertion into plasma membrane raft is_a: GO:0044860 {is_inferred="true"} ! protein localization to plasma membrane raft is_a: GO:0071210 {is_inferred="true"} ! protein insertion into membrane raft @@ -40547,11 +40509,6 @@ is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] -id: GO:0046785 ! microtubule polymerization -is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization - -[Term] id: GO:0046807 ! viral scaffold assembly and maintenance is_a: GO:0016032 {is_inferred="true"} ! viral process @@ -43553,6 +43510,7 @@ [Term] id: GO:0051230 ! spindle disassembly +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -45180,13 +45138,13 @@ [Term] id: GO:0051963 ! regulation of synapse assembly is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis -is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:0051960 {is_inferred="true"} ! regulation of nervous system development [Term] id: GO:0051964 ! negative regulation of synapse assembly +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly -is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:0051965 ! positive regulation of synapse assembly @@ -46312,7 +46270,6 @@ [Term] id: GO:0060271 ! cilium assembly -is_a: GO:0044782 {is_inferred="true"} ! cilium organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly @@ -46368,7 +46325,6 @@ is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly -is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0060298 ! positive regulation of sarcomere organization @@ -46377,7 +46333,6 @@ is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization is_a: GO:0060297 {is_inferred="true"} ! regulation of sarcomere organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly -is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0060299 ! negative regulation of sarcomere organization @@ -46386,7 +46341,6 @@ is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization is_a: GO:0060297 {is_inferred="true"} ! regulation of sarcomere organization is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly -is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0060300 ! regulation of cytokine activity @@ -48964,7 +48918,6 @@ [Term] id: GO:0061523 ! cilium disassembly -is_a: GO:0044782 {is_inferred="true"} ! cilium organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -49156,10 +49109,6 @@ is_a: GO:0005980 {is_inferred="true"} ! glycogen catabolic process [Term] -id: GO:0061726 ! mitochondrion disassembly -is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization - -[Term] id: GO:0061727 ! methylglyoxal catabolic process to lactate is_a: GO:0006089 {is_inferred="true"} ! lactate metabolic process @@ -50708,10 +50657,6 @@ is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] -id: GO:0070726 ! cell wall assembly -is_a: GO:0071555 {is_inferred="true"} ! cell wall organization - -[Term] id: GO:0070728 ! leucine binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding is_a: GO:0043169 {is_inferred="true"} ! cation binding @@ -51176,10 +51121,6 @@ is_a: GO:0070869 {is_inferred="true"} ! heterochromatin assembly involved in chromatin silencing [Term] -id: GO:0070925 ! organelle assembly -is_a: GO:0006996 {is_inferred="true"} ! organelle organization - -[Term] id: GO:0070926 ! regulation of ATP:ADP antiporter activity is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity @@ -53441,10 +53382,6 @@ is_a: GO:0050660 {is_inferred="true"} ! flavin adenine dinucleotide binding [Term] -id: GO:0071971 ! extracellular exosome assembly -is_a: GO:0016050 {is_inferred="true"} ! vesicle organization - -[Term] id: GO:0071986 ! Ragulator complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex @@ -56594,6 +56531,7 @@ [Term] id: GO:0090166 ! Golgi disassembly +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -57950,13 +57888,11 @@ [Term] id: GO:0097104 ! postsynaptic membrane assembly -is_a: GO:0001941 {is_inferred="true"} ! postsynaptic membrane organization is_a: GO:0071709 {is_inferred="true"} ! membrane assembly [Term] id: GO:0097105 ! presynaptic membrane assembly is_a: GO:0071709 {is_inferred="true"} ! membrane assembly -is_a: GO:0097090 {is_inferred="true"} ! presynaptic membrane organization [Term] id: GO:0097106 ! postsynaptic density organization @@ -57964,7 +57900,6 @@ [Term] id: GO:0097107 ! postsynaptic density assembly -is_a: GO:0097106 {is_inferred="true"} ! postsynaptic density organization is_a: GO:0098698 {is_inferred="true"} ! postsynaptic specialization assembly [Term] @@ -58990,7 +58925,6 @@ [Term] id: GO:0098698 ! postsynaptic specialization assembly is_a: GO:0070925 {is_inferred="true"} ! organelle assembly -is_a: GO:0099084 {is_inferred="true"} ! postsynaptic specialization organization [Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle @@ -59208,12 +59142,10 @@ [Term] id: GO:0098785 ! biofilm matrix assembly is_a: GO:0085029 {is_inferred="true"} ! extracellular matrix assembly -is_a: GO:0098784 {is_inferred="true"} ! biofilm matrix organization [Term] id: GO:0098786 ! biofilm matrix disassembly is_a: GO:0022617 {is_inferred="true"} ! extracellular matrix disassembly -is_a: GO:0098784 {is_inferred="true"} ! biofilm matrix organization [Term] id: GO:0098791 ! Golgi subcompartment @@ -61268,12 +61200,10 @@ [Term] id: GO:0120031 ! plasma membrane bounded cell projection assembly is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly -is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly -is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly @@ -61472,6 +61402,7 @@ [Term] id: GO:1900027 ! regulation of ruffle assembly is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1900028 ! negative regulation of ruffle assembly @@ -72133,18 +72064,18 @@ [Term] id: GO:1902115 ! regulation of organelle assembly -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1902116 ! negative regulation of organelle assembly -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] id: GO:1902117 ! positive regulation of organelle assembly -is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] @@ -72608,11 +72539,13 @@ [Term] id: GO:1902208 ! regulation of bacterial-type flagellum assembly +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] id: GO:1902209 ! negative regulation of bacterial-type flagellum assembly +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly is_a: GO:1902208 {is_inferred="true"} ! regulation of bacterial-type flagellum assembly @@ -72619,6 +72552,7 @@ [Term] id: GO:1902210 ! positive regulation of bacterial-type flagellum assembly +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly is_a: GO:1902208 {is_inferred="true"} ! regulation of bacterial-type flagellum assembly @@ -74520,7 +74454,6 @@ [Term] id: GO:1902621 ! actomyosin contractile ring disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly -is_a: GO:0044837 {is_inferred="true"} ! actomyosin contractile ring organization [Term] id: GO:1902622 ! regulation of neutrophil migration @@ -75795,7 +75728,6 @@ [Term] id: GO:1902896 ! terminal web assembly -is_a: GO:0030866 {is_inferred="true"} ! cortical actin cytoskeleton organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -75815,7 +75747,6 @@ [Term] id: GO:1902900 ! gut granule assembly -is_a: GO:0016050 {is_inferred="true"} ! vesicle organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -75824,7 +75755,6 @@ [Term] id: GO:1902902 ! negative regulation of autophagosome assembly -is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly is_a: GO:2000785 {is_inferred="true"} ! regulation of autophagosome assembly @@ -76339,7 +76269,6 @@ [Term] id: GO:1903008 ! organelle disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:1903009 ! proteasome complex disassembly @@ -76926,12 +76855,12 @@ [Term] id: GO:1903146 ! regulation of mitophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy -is_a: GO:0010821 {is_inferred="true"} ! regulation of mitochondrion organization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1903147 ! negative regulation of mitophagy is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy -is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903146 {is_inferred="true"} ! regulation of mitophagy [Term] @@ -77276,7 +77205,6 @@ [Term] id: GO:1903232 ! melanosome assembly -is_a: GO:0032438 {is_inferred="true"} ! melanosome organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -78869,10 +78797,6 @@ is_a: GO:1903832 {is_inferred="true"} ! regulation of cellular response to amino acid starvation [Term] -id: GO:1903575 ! cornified envelope assembly -is_a: GO:0007009 {is_inferred="true"} ! plasma membrane organization - -[Term] id: GO:1903576 ! response to L-arginine is_a: GO:0043200 {is_inferred="true"} ! response to amino acid @@ -79009,7 +78933,7 @@ [Term] id: GO:1903599 ! positive regulation of mitophagy is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy -is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903146 {is_inferred="true"} ! regulation of mitophagy [Term] @@ -80254,13 +80178,10 @@ [Term] id: GO:1903863 ! P granule assembly is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly -is_a: GO:0030719 {is_inferred="true"} ! P granule organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:1903864 ! P granule disassembly -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0030719 {is_inferred="true"} ! P granule organization is_a: GO:0032988 {is_inferred="true"} ! ribonucleoprotein complex disassembly is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly @@ -81778,7 +81699,6 @@ [Term] id: GO:1904185 ! equatorial microtubule organizing center assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization [Term] id: GO:1904186 ! post-anaphase microtubule array organization @@ -82121,7 +82041,6 @@ [Term] id: GO:1904258 ! nuclear dicing body assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0030575 {is_inferred="true"} ! nuclear body organization [Term] id: GO:1904259 ! regulation of basement membrane assembly involved in embryonic body morphogenesis @@ -84882,7 +84801,6 @@ [Term] id: GO:1904821 ! chloroplast disassembly -is_a: GO:0009658 {is_inferred="true"} ! chloroplast organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -86134,7 +86052,6 @@ [Term] id: GO:1905071 ! occluding junction disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly -is_a: GO:0045216 {is_inferred="true"} ! cell-cell junction organization [Term] id: GO:1905072 ! cardiac jelly development @@ -87249,7 +87166,6 @@ is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly -is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation [Term] @@ -87257,7 +87173,6 @@ is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly -is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation @@ -87266,7 +87181,6 @@ is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly -is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation @@ -88273,6 +88187,7 @@ [Term] id: GO:1905518 ! regulation of presynaptic active zone assembly +is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization is_a: GO:1905606 {is_inferred="true"} ! regulation of presynapse assembly [Term] @@ -88279,6 +88194,7 @@ id: GO:1905519 ! negative regulation of presynaptic active zone assembly is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly is_a: GO:1905607 {is_inferred="true"} ! negative regulation of presynapse assembly +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:1905520 ! positive regulation of presynaptic active zone assembly @@ -88438,7 +88354,6 @@ [Term] id: GO:1905556 ! ciliary vesicle assembly -is_a: GO:0016050 {is_inferred="true"} ! vesicle organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -89047,7 +88962,6 @@ [Term] id: GO:1905683 ! peroxisome disassembly -is_a: GO:0007031 {is_inferred="true"} ! peroxisome organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -89083,17 +88997,14 @@ [Term] id: GO:1905690 ! nucleus disassembly -is_a: GO:0006997 {is_inferred="true"} ! nucleus organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] id: GO:1905691 ! lipid particle disassembly -is_a: GO:0034389 {is_inferred="true"} ! lipid particle organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] id: GO:1905692 ! endoplasmic reticulum disassembly -is_a: GO:0007029 {is_inferred="true"} ! endoplasmic reticulum organization is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] @@ -89888,7 +89799,6 @@ [Term] id: GO:1905861 ! intranuclear rod assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:1905862 ! ferroxidase complex @@ -89964,12 +89874,10 @@ [Term] id: GO:1905877 ! invadopodium assembly is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly -is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization [Term] id: GO:1905878 ! invadopodium disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly -is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization [Term] id: GO:1905879 ! regulation of oogenesis @@ -90223,16 +90131,16 @@ [Term] id: GO:1905927 ! regulation of invadopodium disassembly -is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1905928 ! negative regulation of invadopodium disassembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1905927 {is_inferred="true"} ! regulation of invadopodium disassembly [Term] id: GO:1905929 ! positive regulation of invadopodium disassembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1905927 {is_inferred="true"} ! regulation of invadopodium disassembly [Term] @@ -95288,14 +95196,10 @@ [Term] id: GO:2000785 ! regulation of autophagosome assembly -is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy -is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] id: GO:2000786 ! positive regulation of autophagosome assembly -is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy -is_a: GO:0044090 {is_inferred="true"} ! positive regulation of vacuole organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly is_a: GO:2000785 {is_inferred="true"} ! regulation of autophagosome assembly ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41254) +++ go_inferences.obo (working copy) @@ -50645,6 +50645,10 @@ is_a: GO:0070656 {is_inferred="true"} ! mechanoreceptor differentiation involved in mechanosensory epithelium regeneration [Term] +id: GO:0070664 ! negative regulation of leukocyte proliferation +is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation + +[Term] id: GO:0070666 ! regulation of mast cell proliferation is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation @@ -61287,6 +61291,20 @@ is_a: GO:0030030 {is_inferred="true"} ! cell projection organization [Term] +id: GO:0120040 ! regulation of macrophage proliferation +is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation + +[Term] +id: GO:0120041 ! positive regulation of macrophage proliferation +is_a: GO:0070665 {is_inferred="true"} ! positive regulation of leukocyte proliferation +is_a: GO:0120040 {is_inferred="true"} ! regulation of macrophage proliferation + +[Term] +id: GO:0120042 ! negative regulation of macrophage proliferation +is_a: GO:0070664 {is_inferred="true"} ! negative regulation of leukocyte proliferation +is_a: GO:0120040 {is_inferred="true"} ! regulation of macrophage proliferation + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41250) +++ go_inferences.obo (working copy) @@ -10234,10 +10234,6 @@ is_a: GO:0098543 {is_inferred="true"} ! detection of other organism [Term] -id: GO:0009615 ! response to virus -is_a: GO:0016032 {is_inferred="true"} ! viral process - -[Term] id: GO:0009654 ! photosystem II oxygen evolving complex is_a: GO:0044436 {is_inferred="true"} ! thylakoid part is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex @@ -11743,6 +11739,10 @@ is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process [Term] +id: GO:0010497 ! plasmodesmata-mediated intercellular transport +is_a: GO:0010496 {is_inferred="true"} ! intercellular transport + +[Term] id: GO:0010498 ! proteasomal protein catabolic process is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process @@ -17415,24 +17415,10 @@ is_a: GO:0019015 {is_inferred="true"} ! viral genome [Term] -id: GO:0019068 ! virion assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0019069 ! viral capsid assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] -id: GO:0019073 ! viral DNA genome packaging -is_a: GO:1902590 {is_inferred="true"} ! multi-organism organelle organization - -[Term] -id: GO:0019080 ! viral gene expression -is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process - -[Term] id: GO:0019090 ! mitochondrial rRNA export from mitochondrion is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -25096,10 +25082,8 @@ [Term] id: GO:0032897 ! negative regulation of viral transcription -is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression is_a: GO:0046782 {is_inferred="true"} ! regulation of viral transcription -is_a: GO:1902679 {is_inferred="true"} ! negative regulation of RNA biosynthetic process -is_a: GO:1903901 {is_inferred="true"} ! negative regulation of viral life cycle +is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process [Term] id: GO:0032899 ! regulation of neurotrophin production @@ -29788,10 +29772,6 @@ is_a: GO:0031221 {is_inferred="true"} ! arabinan metabolic process [Term] -id: GO:0035915 ! pore formation in membrane of other organism -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0035923 ! flurbiprofen binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding @@ -30711,15 +30691,6 @@ is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway [Term] -id: GO:0039537 ! suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway -is_a: GO:0044831 {is_inferred="true"} ! modulation by virus of host cytokine production - -[Term] -id: GO:0039567 ! suppression by virus of host STAT1 activity by negative regulation of STAT protein import into nucleus -is_a: GO:0044833 {is_inferred="true"} ! modulation by virus of host protein transport -is_a: GO:1990215 {is_inferred="true"} ! negative regulation by symbiont of host intracellular transport - -[Term] id: GO:0039570 ! suppression by virus of host STAT2 activity by negative regulation of STAT protein import into nucleus is_a: GO:0044833 {is_inferred="true"} ! modulation by virus of host protein transport is_a: GO:1990215 {is_inferred="true"} ! negative regulation by symbiont of host intracellular transport @@ -30729,10 +30700,6 @@ is_a: GO:0039588 {is_inferred="true"} ! suppression by virus of host antigen processing and presentation [Term] -id: GO:0039599 ! cleavage by virus of host mRNA -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0039631 ! DNA translocase activity involved in viral DNA genome packaging is_a: GO:0015616 {is_inferred="true"} ! DNA translocase activity @@ -30741,57 +30708,27 @@ is_a: GO:0039630 {is_inferred="true"} ! RNA translocase activity [Term] -id: GO:0039637 ! catabolism by virus of host DNA -is_a: GO:0044035 {is_inferred="true"} ! multi-organism catabolic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0039642 ! virion nucleoid is_a: GO:0009295 {is_inferred="true"} ! nucleoid is_a: GO:0044423 {is_inferred="true"} ! virion part [Term] -id: GO:0039667 ! viral entry into host cell via pilus retraction -is_a: GO:0016032 {is_inferred="true"} ! viral process +id: GO:0039708 ! nuclear capsid assembly +is_a: GO:0019069 {is_inferred="true"} ! viral capsid assembly [Term] -id: GO:0039688 ! viral double stranded DNA replication via reverse transcription -is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process +id: GO:0039709 ! cytoplasmic capsid assembly +is_a: GO:0019069 {is_inferred="true"} ! viral capsid assembly [Term] -id: GO:0039689 ! negative stranded viral RNA replication -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process +id: GO:0039710 ! cytoplasmic icosahedral capsid assembly +is_a: GO:0039709 {is_inferred="true"} ! cytoplasmic capsid assembly [Term] -id: GO:0039690 ! positive stranded viral RNA replication -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process +id: GO:0039711 ! cytoplasmic helical capsid assembly +is_a: GO:0039709 {is_inferred="true"} ! cytoplasmic capsid assembly [Term] -id: GO:0039691 ! double stranded viral RNA replication -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process - -[Term] -id: GO:0039692 ! single stranded viral RNA replication via double stranded DNA intermediate -is_a: GO:0006259 {is_inferred="true"} ! DNA metabolic process - -[Term] -id: GO:0039693 ! viral DNA genome replication -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] -id: GO:0039694 ! viral RNA genome replication -is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] -id: GO:0039699 ! viral mRNA cap methylation -is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound -is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process -is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound - -[Term] id: GO:0040001 ! establishment of mitotic spindle localization is_a: GO:0051293 {is_inferred="true"} ! establishment of spindle localization is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis @@ -34411,7 +34348,7 @@ [Term] id: GO:0043948 ! positive regulation by symbiont of host catalytic activity -is_a: GO:0043947 {is_inferred="true"} ! positive regulation by host of symbiont catalytic activity +is_a: GO:0043085 {is_inferred="true"} ! positive regulation of catalytic activity [Term] id: GO:0043949 ! regulation of cAMP-mediated signaling @@ -35053,10 +34990,6 @@ is_a: GO:0045070 {is_inferred="true"} ! positive regulation of viral genome replication [Term] -id: GO:0044830 ! modulation by host of viral RNA genome replication -is_a: GO:0051252 {is_inferred="true"} ! regulation of RNA metabolic process - -[Term] id: GO:0044831 ! modulation by virus of host cytokine production is_a: GO:0001817 {is_inferred="true"} ! regulation of cytokine production @@ -35107,9 +35040,14 @@ [Term] id: GO:0044866 ! modulation by host of viral exo-alpha-sialidase activity +is_a: GO:0044867 {is_inferred="true"} ! modulation by host of viral catalytic activity is_a: GO:1903015 {is_inferred="true"} ! regulation of exo-alpha-sialidase activity [Term] +id: GO:0044867 ! modulation by host of viral catalytic activity +is_a: GO:0044868 {is_inferred="true"} ! modulation by host of viral molecular function + +[Term] id: GO:0044869 ! negative regulation by host of viral exo-alpha-sialidase activity is_a: GO:1903016 {is_inferred="true"} ! negative regulation of exo-alpha-sialidase activity @@ -35304,8 +35242,6 @@ [Term] id: GO:0045091 ! regulation of single stranded viral RNA replication via double stranded DNA intermediate is_a: GO:0045069 {is_inferred="true"} ! regulation of viral genome replication -is_a: GO:0051052 {is_inferred="true"} ! regulation of DNA metabolic process -is_a: GO:0051252 {is_inferred="true"} ! regulation of RNA metabolic process [Term] id: GO:0045092 ! interleukin-18 receptor complex @@ -37556,15 +37492,11 @@ id: GO:0045869 ! negative regulation of single stranded viral RNA replication via double stranded DNA intermediate is_a: GO:0045071 {is_inferred="true"} ! negative regulation of viral genome replication is_a: GO:0045091 {is_inferred="true"} ! regulation of single stranded viral RNA replication via double stranded DNA intermediate -is_a: GO:0051053 {is_inferred="true"} ! negative regulation of DNA metabolic process -is_a: GO:0051253 {is_inferred="true"} ! negative regulation of RNA metabolic process [Term] id: GO:0045870 ! positive regulation of single stranded viral RNA replication via double stranded DNA intermediate is_a: GO:0045070 {is_inferred="true"} ! positive regulation of viral genome replication is_a: GO:0045091 {is_inferred="true"} ! regulation of single stranded viral RNA replication via double stranded DNA intermediate -is_a: GO:0051054 {is_inferred="true"} ! positive regulation of DNA metabolic process -is_a: GO:0051254 {is_inferred="true"} ! positive regulation of RNA metabolic process [Term] id: GO:0045873 ! negative regulation of sevenless signaling pathway @@ -40583,23 +40515,36 @@ [Term] id: GO:0046752 ! viral capsid precursor transport to host cell nucleus -is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport +is_a: GO:0030581 {is_inferred="true"} ! symbiont intracellular protein transport in host is_a: GO:0075733 {is_inferred="true"} ! intracellular transport of virus [Term] -id: GO:0046773 ! suppression by virus of host translation termination -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +id: GO:0046760 ! viral budding from Golgi membrane +is_a: GO:0046755 {is_inferred="true"} ! viral budding [Term] +id: GO:0046762 ! viral budding from ER membrane +is_a: GO:0046755 {is_inferred="true"} ! viral budding + +[Term] +id: GO:0046765 ! viral budding from nuclear membrane +is_a: GO:0046755 {is_inferred="true"} ! viral budding + +[Term] +id: GO:0046771 ! viral budding from inner nuclear membrane +is_a: GO:0046765 {is_inferred="true"} ! viral budding from nuclear membrane + +[Term] +id: GO:0046772 ! viral budding from outer nuclear membrane +is_a: GO:0046765 {is_inferred="true"} ! viral budding from nuclear membrane + +[Term] id: GO:0046776 ! suppression by virus of host antigen processing and presentation of peptide antigen via MHC class I is_a: GO:0002590 {is_inferred="true"} ! negative regulation of antigen processing and presentation of peptide antigen via MHC class I [Term] id: GO:0046782 ! regulation of viral transcription -is_a: GO:0010468 {is_inferred="true"} ! regulation of gene expression -is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle -is_a: GO:2001141 {is_inferred="true"} ! regulation of RNA biosynthetic process +is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:0046785 ! microtubule polymerization @@ -40608,8 +40553,7 @@ [Term] id: GO:0046807 ! viral scaffold assembly and maintenance -is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] id: GO:0046819 ! protein secretion by the type V secretion system @@ -42288,10 +42232,8 @@ [Term] id: GO:0050434 ! positive regulation of viral transcription -is_a: GO:0010628 {is_inferred="true"} ! positive regulation of gene expression is_a: GO:0046782 {is_inferred="true"} ! regulation of viral transcription -is_a: GO:1902680 {is_inferred="true"} ! positive regulation of RNA biosynthetic process -is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process [Term] id: GO:0050435 ! beta-amyloid metabolic process @@ -42439,7 +42381,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0050688 {is_inferred="true"} ! regulation of defense response to virus [Term] @@ -42448,7 +42390,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:0050696 ! trichloroethylene catabolic process @@ -44803,7 +44745,6 @@ id: GO:0051709 ! regulation of killing of cells of other organism is_a: GO:0031341 {is_inferred="true"} ! regulation of cell killing is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality [Term] id: GO:0051710 ! regulation of cytolysis in other organism @@ -45350,14 +45291,37 @@ is_a: GO:0010113 {is_inferred="true"} ! negative regulation of systemic acquired resistance [Term] +id: GO:0052053 ! negative regulation by symbiont of host catalytic activity +is_a: GO:0052148 {is_inferred="true"} ! modulation by symbiont of host catalytic activity + +[Term] +id: GO:0052054 ! negative regulation by symbiont of host peptidase activity +is_a: GO:0052053 {is_inferred="true"} ! negative regulation by symbiont of host catalytic activity +is_a: GO:0052149 {is_inferred="true"} ! modulation by symbiont of host peptidase activity + +[Term] +id: GO:0052056 ! negative regulation by symbiont of host molecular function +is_a: GO:0052055 {is_inferred="true"} ! modulation by symbiont of host molecular function + +[Term] id: GO:0052074 ! positive regulation by symbiont of host salicylic acid-mediated defense response is_a: GO:1901672 {is_inferred="true"} ! positive regulation of systemic acquired resistance [Term] id: GO:0052148 ! modulation by symbiont of host catalytic activity -is_a: GO:0052422 {is_inferred="true"} ! modulation by host of symbiont catalytic activity +is_a: GO:0052055 {is_inferred="true"} ! modulation by symbiont of host molecular function [Term] +id: GO:0052149 ! modulation by symbiont of host peptidase activity +is_a: GO:0052148 {is_inferred="true"} ! modulation by symbiont of host catalytic activity +is_a: GO:0052547 {is_inferred="true"} ! regulation of peptidase activity + +[Term] +id: GO:0052199 ! negative regulation of catalytic activity in other organism involved in symbiotic interaction +is_a: GO:0043086 {is_inferred="true"} ! negative regulation of catalytic activity +is_a: GO:0052203 {is_inferred="true"} ! modulation of catalytic activity in other organism involved in symbiotic interaction + +[Term] id: GO:0052314 ! phytoalexin metabolic process is_a: GO:0009404 {is_inferred="true"} ! toxin metabolic process @@ -45416,6 +45380,18 @@ is_a: GO:0044179 {is_inferred="true"} ! hemolysis in other organism [Term] +id: GO:0052403 ! negative regulation by host of symbiont catalytic activity +is_a: GO:0052422 {is_inferred="true"} ! modulation by host of symbiont catalytic activity + +[Term] +id: GO:0052404 ! negative regulation by host of symbiont peptidase activity +is_a: GO:0052403 {is_inferred="true"} ! negative regulation by host of symbiont catalytic activity + +[Term] +id: GO:0052405 ! negative regulation by host of symbiont molecular function +is_a: GO:0052428 {is_inferred="true"} ! modulation by host of symbiont molecular function + +[Term] id: GO:0052409 ! metabolism by organism of cell wall cellulose in other organism involved in symbiotic interaction is_a: GO:0044043 {is_inferred="true"} ! multi-organism glucan metabolic process @@ -45425,9 +45401,13 @@ [Term] id: GO:0052422 ! modulation by host of symbiont catalytic activity -is_a: GO:0052055 {is_inferred="true"} ! modulation by symbiont of host molecular function +is_a: GO:0052428 {is_inferred="true"} ! modulation by host of symbiont molecular function [Term] +id: GO:0052427 ! modulation by host of symbiont peptidase activity +is_a: GO:0052547 {is_inferred="true"} ! regulation of peptidase activity + +[Term] id: GO:0052543 ! callose deposition in cell wall is_a: GO:0052545 {is_inferred="true"} ! callose localization @@ -55063,6 +55043,27 @@ is_a: GO:0006914 {is_inferred="true"} ! autophagy [Term] +id: GO:0075075 ! modulation by host of symbiont adenylate cyclase activity +is_a: GO:0045761 {is_inferred="true"} ! regulation of adenylate cyclase activity +is_a: GO:0052422 {is_inferred="true"} ! modulation by host of symbiont catalytic activity + +[Term] +id: GO:0075076 ! positive regulation by host of symbiont adenylate cyclase activity +is_a: GO:0045762 {is_inferred="true"} ! positive regulation of adenylate cyclase activity + +[Term] +id: GO:0075077 ! negative regulation by host of symbiont adenylate cyclase activity +is_a: GO:0007194 {is_inferred="true"} ! negative regulation of adenylate cyclase activity + +[Term] +id: GO:0075107 ! positive regulation by symbiont of host adenylate cyclase activity +is_a: GO:0045762 {is_inferred="true"} ! positive regulation of adenylate cyclase activity + +[Term] +id: GO:0075108 ! negative regulation by symbiont of host adenylate cyclase activity +is_a: GO:0007194 {is_inferred="true"} ! negative regulation of adenylate cyclase activity + +[Term] id: GO:0075184 ! regulation of infection cushion formation on or near host is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism @@ -55504,21 +55505,6 @@ is_a: GO:0051169 {is_inferred="true"} ! nuclear transport [Term] -id: GO:0075522 ! IRES-dependent viral translational initiation -is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] -id: GO:0075523 ! viral translational frameshifting -is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] -id: GO:0075527 ! viral RNA editing -is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0075733 ! intracellular transport of virus is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport @@ -57479,11 +57465,6 @@ is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential [Term] -id: GO:0090401 ! viral-induced premature senescence -is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0090404 ! pollen tube tip is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part @@ -58545,23 +58526,19 @@ [Term] id: GO:0098003 ! viral tail assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] id: GO:0098004 ! virus tail fiber assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] id: GO:0098009 ! viral terminase, large subunit -is_a: GO:0044815 {is_inferred="true"} ! DNA packaging complex is_a: GO:1904949 {is_inferred="true"} ! ATPase complex [Term] id: GO:0098045 ! virus baseplate assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] id: GO:0098501 ! polynucleotide dephosphorylation @@ -61171,6 +61148,26 @@ is_a: GO:0110004 {is_inferred="true"} ! positive regulation of tRNA methylation [Term] +id: GO:0110013 ! positive regulation of aggregation involved in sorocarp development +is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication +is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process + +[Term] +id: GO:0110014 ! negative regulation of aggregation involved in sorocarp development +is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication +is_a: GO:0032108 {is_inferred="true"} ! negative regulation of response to nutrient levels +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process + +[Term] +id: GO:0110015 ! positive regulation of elastin catabolic process +is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process +is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process +is_a: GO:1903020 {is_inferred="true"} ! positive regulation of glycoprotein metabolic process + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -62500,8 +62497,8 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039533 {is_inferred="true"} ! regulation of MDA-5 signaling pathway +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response -is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -62511,8 +62508,8 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response -is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -67661,15 +67658,15 @@ [Term] id: GO:1901217 ! regulation of holin activity -is_a: GO:0001898 {is_inferred="true"} ! regulation of cytolysis by symbiont of host cells is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity +is_a: GO:0051709 {is_inferred="true"} ! regulation of killing of cells of other organism is_a: GO:1902186 {is_inferred="true"} ! regulation of viral release from host cell [Term] id: GO:1901218 ! negative regulation of holin activity -is_a: GO:0001899 {is_inferred="true"} ! negative regulation of cytolysis by symbiont of host cells is_a: GO:0032410 {is_inferred="true"} ! negative regulation of transporter activity is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0051711 {is_inferred="true"} ! negative regulation of killing of cells of other organism is_a: GO:1901217 {is_inferred="true"} ! regulation of holin activity is_a: GO:1902187 {is_inferred="true"} ! negative regulation of viral release from host cell @@ -74345,12 +74342,6 @@ is_a: GO:0044765 {is_inferred="true"} ! single-organism transport [Term] -id: GO:1902586 ! multi-organism intercellular transport -is_a: GO:0010496 {is_inferred="true"} ! intercellular transport -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process -is_a: GO:0044766 {is_inferred="true"} ! multi-organism transport - -[Term] id: GO:1902587 ! single-organism plasmodesmata-mediated intercellular transport is_a: GO:0010497 {is_inferred="true"} ! plasmodesmata-mediated intercellular transport is_a: GO:1902585 {is_inferred="true"} ! single-organism intercellular transport @@ -74358,7 +74349,8 @@ [Term] id: GO:1902588 ! multi-organism plasmodesmata-mediated intercellular transport is_a: GO:0010497 {is_inferred="true"} ! plasmodesmata-mediated intercellular transport -is_a: GO:1902586 {is_inferred="true"} ! multi-organism intercellular transport +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0044766 {is_inferred="true"} ! multi-organism transport [Term] id: GO:1902590 ! multi-organism organelle organization @@ -74372,12 +74364,6 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] -id: GO:1902592 ! multi-organism membrane budding -is_a: GO:0006900 {is_inferred="true"} ! membrane budding -is_a: GO:0044803 {is_inferred="true"} ! multi-organism membrane organization -is_a: GO:1902590 {is_inferred="true"} ! multi-organism organelle organization - -[Term] id: GO:1902593 ! single-organism nuclear import is_a: GO:0051170 {is_inferred="true"} ! nuclear import is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -79815,23 +79801,15 @@ [Term] id: GO:1903772 ! regulation of viral budding via host ESCRT complex -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization -is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis -is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle [Term] id: GO:1903773 ! negative regulation of viral budding via host ESCRT complex -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:1903772 {is_inferred="true"} ! regulation of viral budding via host ESCRT complex is_a: GO:1903901 {is_inferred="true"} ! negative regulation of viral life cycle [Term] id: GO:1903774 ! positive regulation of viral budding via host ESCRT complex -is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:1903772 {is_inferred="true"} ! regulation of viral budding via host ESCRT complex is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle @@ -81791,7 +81769,6 @@ [Term] id: GO:1904187 ! regulation of transformation of host cell by virus is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process -is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality [Term] id: GO:1904188 ! negative regulation of transformation of host cell by virus @@ -85626,19 +85603,16 @@ [Term] id: GO:1904971 ! regulation of viral translation -is_a: GO:0006417 {is_inferred="true"} ! regulation of translation -is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle +is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:1904972 ! negative regulation of viral translation -is_a: GO:0017148 {is_inferred="true"} ! negative regulation of translation -is_a: GO:1903901 {is_inferred="true"} ! negative regulation of viral life cycle +is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process is_a: GO:1904971 {is_inferred="true"} ! regulation of viral translation [Term] id: GO:1904973 ! positive regulation of viral translation -is_a: GO:0045727 {is_inferred="true"} ! positive regulation of translation -is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1904971 {is_inferred="true"} ! regulation of viral translation [Term] @@ -86470,16 +86444,12 @@ [Term] id: GO:1905137 ! regulation of viral DNA genome packaging via site-specific sequence recognition -is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization -is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle [Term] id: GO:1905138 ! positive regulation of viral DNA genome packaging via site-specific sequence recognition -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle is_a: GO:1905137 {is_inferred="true"} ! regulation of viral DNA genome packaging via site-specific sequence recognition -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1905139 ! apical ectodermal ridge formation @@ -91495,6 +91465,10 @@ is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process [Term] +id: GO:1990969 ! modulation by host of viral RNA-binding transcription factor activity +is_a: GO:0052428 {is_inferred="true"} ! modulation by host of symbiont molecular function + +[Term] id: GO:1990971 ! EMILIN complex is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component is_a: GO:0098637 {is_inferred="true"} ! protein complex involved in cell-matrix adhesion ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 41209) +++ go_inferences.obo (working copy) @@ -60896,11 +60896,6 @@ is_a: GO:0045739 {is_inferred="true"} ! positive regulation of DNA repair [Term] -id: GO:0100027 ! regulation of cell separation after cytokinesis by transcription from RNA polymerase II promoter -is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0010590 {is_inferred="true"} ! regulation of cell separation after cytokinesis - -[Term] id: GO:0100028 ! regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion @@ -63317,11 +63312,6 @@ is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter [Term] -id: GO:1900405 ! regulation of cell separation after cytokinesis by regulation of transcription from RNA polymerase II promoter -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter -is_a: GO:0010590 {is_inferred="true"} ! regulation of cell separation after cytokinesis - -[Term] id: GO:1900406 ! regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40993) +++ go_inferences.obo (working copy) @@ -17417,10 +17417,12 @@ [Term] id: GO:0019068 ! virion assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0019069 ! viral capsid assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0019073 ! viral DNA genome packaging @@ -30675,6 +30677,7 @@ [Term] id: GO:0039528 ! cytoplasmic pattern recognition receptor signaling pathway in response to virus is_a: GO:0002753 {is_inferred="true"} ! cytoplasmic pattern recognition receptor signaling pathway +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0039531 ! regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway @@ -30726,6 +30729,10 @@ is_a: GO:0039588 {is_inferred="true"} ! suppression by virus of host antigen processing and presentation [Term] +id: GO:0039599 ! cleavage by virus of host mRNA +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process + +[Term] id: GO:0039631 ! DNA translocase activity involved in viral DNA genome packaging is_a: GO:0015616 {is_inferred="true"} ! DNA translocase activity @@ -30736,6 +30743,7 @@ [Term] id: GO:0039637 ! catabolism by virus of host DNA is_a: GO:0044035 {is_inferred="true"} ! multi-organism catabolic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0039642 ! virion nucleoid @@ -30769,15 +30777,18 @@ [Term] id: GO:0039693 ! viral DNA genome replication is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0039694 ! viral RNA genome replication is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0039699 ! viral mRNA cap methylation is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound [Term] @@ -40578,6 +40589,7 @@ [Term] id: GO:0046773 ! suppression by virus of host translation termination is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0046776 ! suppression by virus of host antigen processing and presentation of peptide antigen via MHC class I @@ -40597,6 +40609,7 @@ [Term] id: GO:0046807 ! viral scaffold assembly and maintenance is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0046819 ! protein secretion by the type V secretion system @@ -41683,13 +41696,11 @@ [Term] id: GO:0048524 ! positive regulation of viral process is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:0048525 ! negative regulation of viral process is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] @@ -42704,7 +42715,6 @@ [Term] id: GO:0050792 ! regulation of viral process is_a: GO:0043903 {is_inferred="true"} ! regulation of symbiosis, encompassing mutualism through parasitism -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] id: GO:0050799 ! cocaine biosynthetic process @@ -55496,14 +55506,17 @@ [Term] id: GO:0075522 ! IRES-dependent viral translational initiation is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0075523 ! viral translational frameshifting is_a: GO:0044034 {is_inferred="true"} ! multi-organism biosynthetic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0075527 ! viral RNA editing is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0075733 ! intracellular transport of virus @@ -58533,10 +58546,12 @@ [Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0098004 ! virus tail fiber assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0098009 ! viral terminase, large subunit @@ -58546,6 +58561,7 @@ [Term] id: GO:0098045 ! virus baseplate assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] id: GO:0098501 ! polynucleotide dephosphorylation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40950) +++ go_inferences.obo (working copy) @@ -266,7 +266,6 @@ id: GO:0000086 ! G2/M transition of mitotic cell cycle is_a: GO:0044772 {is_inferred="true"} ! mitotic cell cycle phase transition is_a: GO:0044839 {is_inferred="true"} ! cell cycle G2/M phase transition -is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division [Term] id: GO:0000087 ! mitotic M phase @@ -8035,6 +8034,10 @@ is_a: GO:0071174 {is_inferred="true"} ! mitotic spindle checkpoint [Term] +id: GO:0007095 ! mitotic G2 DNA damage checkpoint +is_a: GO:0031572 {is_inferred="true"} ! G2 DNA damage checkpoint + +[Term] id: GO:0007096 ! regulation of exit from mitosis is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division @@ -11594,7 +11597,6 @@ [Term] id: GO:0010389 ! regulation of G2/M transition of mitotic cell cycle -is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division is_a: GO:1901990 {is_inferred="true"} ! regulation of mitotic cell cycle phase transition is_a: GO:1902749 {is_inferred="true"} ! regulation of cell cycle G2/M phase transition @@ -13324,7 +13326,6 @@ [Term] id: GO:0010971 ! positive regulation of G2/M transition of mitotic cell cycle is_a: GO:0010389 {is_inferred="true"} ! regulation of G2/M transition of mitotic cell cycle -is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:1901992 {is_inferred="true"} ! positive regulation of mitotic cell cycle phase transition is_a: GO:1902751 {is_inferred="true"} ! positive regulation of cell cycle G2/M phase transition ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40949) +++ go_inferences.obo (working copy) @@ -61311,6 +61311,10 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] +id: GO:0140025 ! contractile vacuole tethering involved in discharge +is_a: GO:0006903 {is_inferred="true"} ! vesicle targeting + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40934) +++ go_inferences.obo (working copy) @@ -49324,6 +49324,38 @@ is_a: GO:0033137 {is_inferred="true"} ! negative regulation of peptidyl-serine phosphorylation [Term] +id: GO:0061868 ! hepatic stellate cell migration +is_a: GO:0010761 {is_inferred="true"} ! fibroblast migration + +[Term] +id: GO:0061869 ! regulation of hepatic stellate cell migration +is_a: GO:0010762 {is_inferred="true"} ! regulation of fibroblast migration + +[Term] +id: GO:0061870 ! positive regulation of hepatic stellate cell migration +is_a: GO:0010763 {is_inferred="true"} ! positive regulation of fibroblast migration +is_a: GO:0061869 {is_inferred="true"} ! regulation of hepatic stellate cell migration + +[Term] +id: GO:0061871 ! negative regulation of hepatic stellate cell migration +is_a: GO:0010764 {is_inferred="true"} ! negative regulation of fibroblast migration +is_a: GO:0061869 {is_inferred="true"} ! regulation of hepatic stellate cell migration + +[Term] +id: GO:0061873 ! regulation of hepatic stellate cell contraction +is_a: GO:1903115 {is_inferred="true"} ! regulation of actin filament-based movement + +[Term] +id: GO:0061874 ! positive regulation of hepatic stellate cell contraction +is_a: GO:0061873 {is_inferred="true"} ! regulation of hepatic stellate cell contraction +is_a: GO:1903116 {is_inferred="true"} ! positive regulation of actin filament-based movement + +[Term] +id: GO:0061875 ! negative regulation of hepatic stellate cell contraction +is_a: GO:0051271 {is_inferred="true"} ! negative regulation of cellular component movement +is_a: GO:0061873 {is_inferred="true"} ! regulation of hepatic stellate cell contraction + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40931) +++ go_inferences.obo (working copy) @@ -15436,6 +15436,7 @@ [Term] id: GO:0015810 ! aspartate transport is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport +is_a: GO:0015800 {is_inferred="true"} ! acidic amino acid transport [Term] id: GO:0015811 ! L-cystine transport @@ -15451,6 +15452,7 @@ [Term] id: GO:0015813 ! L-glutamate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0015800 {is_inferred="true"} ! acidic amino acid transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport [Term] @@ -45120,16 +45122,17 @@ [Term] id: GO:0051936 ! gamma-aminobutyric acid reuptake +is_a: GO:0015812 {is_inferred="true"} ! gamma-aminobutyric acid transport is_a: GO:0051933 {is_inferred="true"} ! amino acid neurotransmitter reuptake -is_a: GO:0051939 {is_inferred="true"} ! gamma-aminobutyric acid import [Term] id: GO:0051938 ! L-glutamate import -is_a: GO:0015813 {is_inferred="true"} ! L-glutamate transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] id: GO:0051939 ! gamma-aminobutyric acid import +is_a: GO:0015800 {is_inferred="true"} ! acidic amino acid transport is_a: GO:0015812 {is_inferred="true"} ! gamma-aminobutyric acid transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import @@ -48979,7 +48982,8 @@ [Term] id: GO:0061528 ! aspartate secretion -is_a: GO:0015810 {is_inferred="true"} ! aspartate transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] @@ -50778,13 +50782,13 @@ [Term] id: GO:0070777 ! D-aspartate transport -is_a: GO:0015810 {is_inferred="true"} ! aspartate transport +is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport [Term] id: GO:0070778 ! L-aspartate transport +is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport -is_a: GO:0015810 {is_inferred="true"} ! aspartate transport [Term] id: GO:0070779 ! D-aspartate import @@ -55995,10 +55999,11 @@ [Term] id: GO:0089704 ! L-glutamate transmembrane export from vacuole +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export -is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] id: GO:0089705 ! protein localization to outer membrane @@ -56034,6 +56039,7 @@ [Term] id: GO:0089711 ! L-glutamate transmembrane transport +is_a: GO:0015813 {is_inferred="true"} ! L-glutamate transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] @@ -57507,7 +57513,7 @@ [Term] id: GO:0090453 ! aspartate transmembrane import into vacuole -is_a: GO:0015810 {is_inferred="true"} ! aspartate transport +is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import @@ -57515,7 +57521,8 @@ [Term] id: GO:0090454 ! glutamate transmembrane import into vacuole is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0015800 {is_inferred="true"} ! acidic amino acid transport +is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole [Term] id: GO:0090455 ! ornithine transmembrane import into vacuole @@ -57656,6 +57663,7 @@ [Term] id: GO:0090515 ! L-glutamate transmembrane import into vacuole is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport +is_a: GO:0090454 {is_inferred="true"} ! glutamate transmembrane import into vacuole is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import across plasma membrane [Term] @@ -57666,8 +57674,9 @@ [Term] id: GO:0090517 ! L-lysine transmembrane import into vacuole -is_a: GO:0015819 {is_inferred="true"} ! lysine transport is_a: GO:0061461 {is_inferred="true"} ! L-lysine import +is_a: GO:0090456 {is_inferred="true"} ! lysine transmembrane import into vacuole +is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:0090518 ! L-arginine transmembrane import into vacuole @@ -59018,8 +59027,8 @@ [Term] id: GO:0098712 ! L-glutamate import across plasma membrane -is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import across plasma membrane [Term] @@ -66058,17 +66067,16 @@ [Term] id: GO:1900920 ! regulation of L-glutamate import -is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import [Term] id: GO:1900921 ! negative regulation of L-glutamate import -is_a: GO:0002037 {is_inferred="true"} ! negative regulation of L-glutamate transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import [Term] id: GO:1900922 ! positive regulation of L-glutamate import -is_a: GO:0002038 {is_inferred="true"} ! positive regulation of L-glutamate transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40906) +++ go_inferences.obo (working copy) @@ -40919,6 +40919,7 @@ [Term] id: GO:0047496 ! vesicle transport along microtubule +is_a: GO:0072384 {is_inferred="true"} ! organelle transport along microtubule is_a: GO:0099518 {is_inferred="true"} ! vesicle cytoskeletal trafficking [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40903) +++ go_inferences.obo (working copy) @@ -299,6 +299,11 @@ is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] +id: GO:0000100 ! S-methylmethionine transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity +is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity + +[Term] id: GO:0000101 ! sulfur amino acid transport is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport @@ -4760,6 +4765,7 @@ [Term] id: GO:0005308 ! creatine transmembrane transporter activity is_a: GO:0015171 {is_inferred="true"} ! amino acid transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity [Term] id: GO:0005309 ! creatine:sodium symporter activity @@ -14241,6 +14247,7 @@ id: GO:0015184 ! L-cystine transmembrane transporter activity is_a: GO:0000099 {is_inferred="true"} ! sulfur amino acid transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity [Term] id: GO:0015185 ! gamma-aminobutyric acid transmembrane transporter activity @@ -14418,6 +14425,7 @@ id: GO:0015233 ! pantothenate transmembrane transporter activity is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity [Term] id: GO:0015234 ! thiamine transmembrane transporter activity @@ -14719,6 +14727,7 @@ id: GO:0015569 ! p-aminobenzoyl-glutamate transmembrane transporter activity is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity is_a: GO:0071916 {is_inferred="true"} ! dipeptide transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity [Term] id: GO:0015571 ! N-acetylgalactosamine transmembrane transporter activity @@ -15401,6 +15410,7 @@ [Term] id: GO:0015805 ! S-adenosyl-L-methionine transport +is_a: GO:0051182 {is_inferred="true"} ! coenzyme transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport @@ -15421,6 +15431,7 @@ [Term] id: GO:0015809 ! arginine transport is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport [Term] id: GO:0015810 ! aspartate transport @@ -15456,6 +15467,7 @@ [Term] id: GO:0015817 ! histidine transport is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] @@ -15466,6 +15478,7 @@ [Term] id: GO:0015819 ! lysine transport is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport [Term] id: GO:0015820 ! leucine transport @@ -15672,6 +15685,7 @@ [Term] id: GO:0015876 ! acetyl-CoA transport is_a: GO:0015916 {is_inferred="true"} ! fatty-acyl-CoA transport +is_a: GO:0051182 {is_inferred="true"} ! coenzyme transport [Term] id: GO:0015877 ! biopterin transport @@ -15692,6 +15706,7 @@ id: GO:0015880 ! coenzyme A transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport +is_a: GO:0051182 {is_inferred="true"} ! coenzyme transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport [Term] @@ -15708,6 +15723,7 @@ id: GO:0015883 ! FAD transport is_a: GO:0006862 {is_inferred="true"} ! nucleotide transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0051182 {is_inferred="true"} ! coenzyme transport [Term] id: GO:0015884 ! folic acid transport @@ -15731,6 +15747,7 @@ id: GO:0015887 ! pantothenate transmembrane transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0051182 {is_inferred="true"} ! coenzyme transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport @@ -25317,13 +25334,11 @@ [Term] id: GO:0032974 ! amino acid transmembrane export from vacuole is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export [Term] id: GO:0032975 ! amino acid transmembrane import into vacuole is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import [Term] @@ -27641,7 +27656,7 @@ [Term] id: GO:0034226 ! lysine import -is_a: GO:0015819 {is_inferred="true"} ! lysine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -28106,15 +28121,22 @@ [Term] id: GO:0034488 ! basic amino acid transmembrane export from vacuole -is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:1990822 {is_inferred="true"} ! basic amino acid transmembrane transport [Term] id: GO:0034489 ! neutral amino acid transmembrane export from vacuole is_a: GO:0015804 {is_inferred="true"} ! neutral amino acid transport -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export [Term] +id: GO:0034490 ! basic amino acid transmembrane import into vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:1990822 {is_inferred="true"} ! basic amino acid transmembrane transport + +[Term] id: GO:0034496 ! multivesicular body membrane disassembly is_a: GO:0030397 {is_inferred="true"} ! membrane disassembly @@ -28166,6 +28188,10 @@ is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] +id: GO:0034590 ! L-hydroxyproline transmembrane transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity + +[Term] id: GO:0034592 ! synaptic vesicle lumen is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -28223,6 +28249,7 @@ is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0035673 {is_inferred="true"} ! oligopeptide transmembrane transporter activity is_a: GO:0042937 {is_inferred="true"} ! tripeptide transporter activity +is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] @@ -28880,18 +28907,18 @@ [Term] id: GO:0035348 ! acetyl-CoA transmembrane transport -is_a: GO:0015876 {is_inferred="true"} ! acetyl-CoA transport +is_a: GO:0015916 {is_inferred="true"} ! fatty-acyl-CoA transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0035349 ! coenzyme A transmembrane transport -is_a: GO:0015880 {is_inferred="true"} ! coenzyme A transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0071106 {is_inferred="true"} ! adenosine 3',5'-bisphosphate transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0035350 ! FAD transmembrane transport -is_a: GO:0015883 {is_inferred="true"} ! FAD transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport @@ -43476,6 +43503,10 @@ is_a: GO:0070192 {is_inferred="true"} ! chromosome organization involved in meiotic cell cycle [Term] +id: GO:0051182 ! coenzyme transport +is_a: GO:0051181 {is_inferred="true"} ! cofactor transport + +[Term] id: GO:0051183 ! vitamin transporter activity is_a: GO:0005215 {is_inferred="true"} ! transporter activity @@ -53414,6 +53445,7 @@ [Term] id: GO:0071996 ! glutathione transmembrane import into vacuole is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034775 {is_inferred="true"} ! glutathione transmembrane transport [Term] id: GO:0071998 ! ascospore release from ascus @@ -54027,6 +54059,10 @@ is_a: GO:0042493 {is_inferred="true"} ! response to drug [Term] +id: GO:0072349 ! modified amino acid transmembrane transporter activity +is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity + +[Term] id: GO:0072350 ! tricarboxylic acid metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process @@ -55951,12 +55987,16 @@ [Term] id: GO:0089703 ! L-aspartate transmembrane export from vacuole -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport [Term] id: GO:0089704 ! L-glutamate transmembrane export from vacuole -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport [Term] @@ -55966,16 +56006,22 @@ [Term] id: GO:0089706 ! L-ornithine transmembrane export from vacuole -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export is_a: GO:1903352 {is_inferred="true"} ! L-ornithine transmembrane transport [Term] id: GO:0089707 ! L-lysine transmembrane export from vacuole -is_a: GO:0034488 {is_inferred="true"} ! basic amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:0089708 ! L-histidine transmembrane export from vacuole +is_a: GO:0015817 {is_inferred="true"} ! histidine transport +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:0034488 {is_inferred="true"} ! basic amino acid transmembrane export from vacuole is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport @@ -57461,26 +57507,41 @@ [Term] id: GO:0090453 ! aspartate transmembrane import into vacuole is_a: GO:0015810 {is_inferred="true"} ! aspartate transport -is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import [Term] id: GO:0090454 ! glutamate transmembrane import into vacuole is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport [Term] id: GO:0090455 ! ornithine transmembrane import into vacuole +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:0090456 ! lysine transmembrane import into vacuole +is_a: GO:0015819 {is_inferred="true"} ! lysine transport +is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034226 {is_inferred="true"} ! lysine import +is_a: GO:0034490 {is_inferred="true"} ! basic amino acid transmembrane import into vacuole is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:0090457 ! histidine transmembrane import into vacuole +is_a: GO:0015817 {is_inferred="true"} ! histidine transport +is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034490 {is_inferred="true"} ! basic amino acid transmembrane import into vacuole +is_a: GO:0090466 {is_inferred="true"} ! histidine import is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:0090458 ! arginine transmembrane import into vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import +is_a: GO:0090467 {is_inferred="true"} ! arginine import is_a: GO:1903826 {is_inferred="true"} ! arginine transmembrane transport [Term] @@ -57505,12 +57566,13 @@ [Term] id: GO:0090466 ! histidine import -is_a: GO:0015817 {is_inferred="true"} ! histidine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import +is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] id: GO:0090467 ! arginine import -is_a: GO:0015809 {is_inferred="true"} ! arginine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -57581,9 +57643,11 @@ id: GO:0090513 ! L-histidine transmembrane import into vacuole is_a: GO:0061460 {is_inferred="true"} ! L-histidine import is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport +is_a: GO:0090457 {is_inferred="true"} ! histidine transmembrane import into vacuole [Term] id: GO:0090514 ! L-tyrosine transmembrane import into vacuole +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0036232 {is_inferred="true"} ! L-tyrosine import is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport @@ -57601,12 +57665,13 @@ [Term] id: GO:0090517 ! L-lysine transmembrane import into vacuole +is_a: GO:0015819 {is_inferred="true"} ! lysine transport is_a: GO:0061461 {is_inferred="true"} ! L-lysine import -is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:0090518 ! L-arginine transmembrane import into vacuole is_a: GO:0043091 {is_inferred="true"} ! L-arginine import +is_a: GO:0090458 {is_inferred="true"} ! arginine transmembrane import into vacuole is_a: GO:1903400 {is_inferred="true"} ! L-arginine transmembrane transport [Term] @@ -58979,9 +59044,9 @@ [Term] id: GO:0098717 ! pantothenate import across plasma membrane -is_a: GO:0015887 {is_inferred="true"} ! pantothenate transmembrane transport is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1901688 {is_inferred="true"} ! pantothenate import +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0098718 ! serine import across plasma membrane @@ -59207,6 +59272,7 @@ id: GO:0098829 ! intestinal folate absorption is_a: GO:0015884 {is_inferred="true"} ! folic acid transport is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process +is_a: GO:0050892 {is_inferred="true"} ! intestinal absorption [Term] id: GO:0098830 ! presynaptic endosome @@ -71238,7 +71304,6 @@ id: GO:1901962 ! S-adenosyl-L-methionine transmembrane transport is_a: GO:0015805 {is_inferred="true"} ! S-adenosyl-L-methionine transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport -is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:1901963 ! regulation of cell proliferation involved in outflow tract morphogenesis @@ -71539,18 +71604,19 @@ [Term] id: GO:1902022 ! L-lysine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport -is_a: GO:0015819 {is_inferred="true"} ! lysine transport [Term] id: GO:1902023 ! L-arginine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport -is_a: GO:0015809 {is_inferred="true"} ! arginine transport [Term] id: GO:1902024 ! L-histidine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport -is_a: GO:0015817 {is_inferred="true"} ! histidine transport +is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] id: GO:1902025 ! nitrate import @@ -77961,9 +78027,9 @@ [Term] id: GO:1903400 ! L-arginine transmembrane transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902023 {is_inferred="true"} ! L-arginine transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport -is_a: GO:1903826 {is_inferred="true"} ! arginine transmembrane transport [Term] id: GO:1903401 ! L-lysine transmembrane transport @@ -79963,9 +80029,9 @@ [Term] id: GO:1903826 ! arginine transmembrane transport -is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0015809 {is_inferred="true"} ! arginine transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:1990822 {is_inferred="true"} ! basic amino acid transmembrane transport [Term] id: GO:1903827 ! regulation of cellular protein localization @@ -90895,7 +90961,7 @@ [Term] id: GO:1990543 ! mitochondrial S-adenosyl-L-methionine transmembrane transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:1901962 {is_inferred="true"} ! S-adenosyl-L-methionine transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91026,6 +91092,7 @@ [Term] id: GO:1990591 ! asparagine transmembrane import into vacuole is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0090469 {is_inferred="true"} ! asparagine import is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport @@ -91250,6 +91317,7 @@ [Term] id: GO:1990818 ! L-arginine transmembrane export from vacuole +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:1903400 {is_inferred="true"} ! L-arginine transmembrane transport [Term] @@ -91260,6 +91328,7 @@ [Term] id: GO:1990822 ! basic amino acid transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport [Term] id: GO:1990849 ! maintenance of vacuolar location ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40891) +++ go_inferences.obo (working copy) @@ -4551,7 +4551,7 @@ [Term] id: GO:0003399 ! cytoneme morphogenesis -is_a: GO:0048858 {is_inferred="true"} ! cell projection morphogenesis +is_a: GO:0120039 {is_inferred="true"} ! plasma membrane bounded cell projection morphogenesis [Term] id: GO:0003400 ! regulation of COPII vesicle coating @@ -13340,8 +13340,8 @@ [Term] id: GO:0010975 ! regulation of neuron projection development -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0010976 ! positive regulation of neuron projection development @@ -21498,6 +21498,10 @@ is_a: GO:0031170 {is_inferred="true"} ! ferricrocin metabolic process [Term] +id: GO:0031175 ! neuron projection development +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization + +[Term] id: GO:0031177 ! phosphopantetheine binding is_a: GO:0033218 {is_inferred="true"} ! amide binding is_a: GO:0043168 {is_inferred="true"} ! anion binding @@ -42106,7 +42110,7 @@ [Term] id: GO:0048812 ! neuron projection morphogenesis -is_a: GO:0048858 {is_inferred="true"} ! cell projection morphogenesis +is_a: GO:0120039 {is_inferred="true"} ! plasma membrane bounded cell projection morphogenesis [Term] id: GO:0048813 ! dendrite morphogenesis @@ -45947,8 +45951,8 @@ is_a: GO:0002066 {is_inferred="true"} ! columnar/cuboidal epithelial cell development [Term] -id: GO:0060121 ! vestibular receptor cell stereocilium organization -is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization +id: GO:0060122 ! inner ear receptor stereocilium organization +is_a: GO:0031175 {is_inferred="true"} ! neuron projection development [Term] id: GO:0060123 ! regulation of growth hormone secretion @@ -47993,6 +47997,7 @@ [Term] id: GO:0060997 ! dendritic spine morphogenesis +is_a: GO:0031175 {is_inferred="true"} ! neuron projection development is_a: GO:0048812 {is_inferred="true"} ! neuron projection morphogenesis [Term] @@ -48013,7 +48018,6 @@ id: GO:0061001 ! regulation of dendritic spine morphogenesis is_a: GO:0048814 {is_inferred="true"} ! regulation of dendrite morphogenesis is_a: GO:0060998 {is_inferred="true"} ! regulation of dendritic spine development -is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0061002 ! negative regulation of dendritic spine morphogenesis @@ -54528,7 +54532,7 @@ [Term] id: GO:0072673 ! lamellipodium morphogenesis -is_a: GO:0048858 {is_inferred="true"} ! cell projection morphogenesis +is_a: GO:0120039 {is_inferred="true"} ! plasma membrane bounded cell projection morphogenesis [Term] id: GO:0072677 ! eosinophil migration ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40886) +++ go_inferences.obo (working copy) @@ -61009,6 +61009,21 @@ is_a: GO:1904776 {is_inferred="true"} ! regulation of protein localization to cell cortex [Term] +id: GO:0106014 ! regulation of inflammatory response to wounding +is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response +is_a: GO:1903034 {is_inferred="true"} ! regulation of response to wounding + +[Term] +id: GO:0106015 ! negative regulation of inflammatory response to wounding +is_a: GO:0050728 {is_inferred="true"} ! negative regulation of inflammatory response +is_a: GO:1903035 {is_inferred="true"} ! negative regulation of response to wounding + +[Term] +id: GO:0106016 ! positive regulation of inflammatory response to wounding +is_a: GO:0050729 {is_inferred="true"} ! positive regulation of inflammatory response +is_a: GO:1903036 {is_inferred="true"} ! positive regulation of response to wounding + +[Term] id: GO:0110001 ! toxin-antitoxin complex is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex @@ -83661,21 +83676,21 @@ [Term] id: GO:1904596 ! regulation of connective tissue replacement involved in inflammatory response wound healing -is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing +is_a: GO:0106014 {is_inferred="true"} ! regulation of inflammatory response to wounding is_a: GO:1905203 {is_inferred="true"} ! regulation of connective tissue replacement [Term] id: GO:1904597 ! negative regulation of connective tissue replacement involved in inflammatory response wound healing -is_a: GO:0050728 {is_inferred="true"} ! negative regulation of inflammatory response is_a: GO:0061045 {is_inferred="true"} ! negative regulation of wound healing +is_a: GO:0106015 {is_inferred="true"} ! negative regulation of inflammatory response to wounding is_a: GO:1904596 {is_inferred="true"} ! regulation of connective tissue replacement involved in inflammatory response wound healing is_a: GO:1905204 {is_inferred="true"} ! negative regulation of connective tissue replacement [Term] id: GO:1904598 ! positive regulation of connective tissue replacement involved in inflammatory response wound healing -is_a: GO:0050729 {is_inferred="true"} ! positive regulation of inflammatory response is_a: GO:0090303 {is_inferred="true"} ! positive regulation of wound healing +is_a: GO:0106016 {is_inferred="true"} ! positive regulation of inflammatory response to wounding is_a: GO:1904596 {is_inferred="true"} ! regulation of connective tissue replacement involved in inflammatory response wound healing is_a: GO:1905205 {is_inferred="true"} ! positive regulation of connective tissue replacement ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40884) +++ go_inferences.obo (working copy) @@ -1263,6 +1263,10 @@ is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] +id: GO:0001400 ! mating projection base +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0001401 ! mitochondrial sorting and assembly machinery complex is_a: GO:0098799 {is_inferred="true"} ! outer mitochondrial membrane protein complex @@ -7865,6 +7869,7 @@ id: GO:0007027 ! negative regulation of axonemal microtubule depolymerization is_a: GO:0007026 {is_inferred="true"} ! negative regulation of microtubule depolymerization is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0007028 ! cytoplasm organization @@ -16090,10 +16095,12 @@ [Term] id: GO:0016027 ! inaD signaling complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0016029 ! subrhabdomeral cisterna is_a: GO:0098827 {is_inferred="true"} ! endoplasmic reticulum subcompartment +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0016031 ! tRNA import into mitochondrion @@ -19745,6 +19752,10 @@ is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] +id: GO:0022857 ! transmembrane transporter activity +is_a: GO:0005215 {is_inferred="true"} ! transporter activity + +[Term] id: GO:0022858 ! alanine transmembrane transporter activity is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity @@ -20292,6 +20303,7 @@ [Term] id: GO:0030426 ! growth cone is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0030446 ! hyphal cell wall @@ -21571,7 +21583,7 @@ [Term] id: GO:0031268 ! pseudopodium organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0031269 ! pseudopodium assembly @@ -22112,7 +22124,7 @@ [Term] id: GO:0031529 ! ruffle organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0031536 ! positive regulation of exit from mitosis @@ -22199,7 +22211,7 @@ [Term] id: GO:0031563 ! mating projection tip polarisome is_a: GO:0000133 {is_inferred="true"} ! polarisome -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0031567 ! mitotic cell size control checkpoint @@ -22994,7 +23006,7 @@ [Term] id: GO:0032162 ! mating projection septin band is_a: GO:0032158 {is_inferred="true"} ! septin band -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0032168 ! hyphal septin ring @@ -23019,7 +23031,7 @@ [Term] id: GO:0032175 ! mating projection septin ring is_a: GO:0005940 {is_inferred="true"} ! septin ring -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0032177 ! cellular bud neck split septin rings @@ -23690,7 +23702,7 @@ [Term] id: GO:0032420 ! stereocilium -is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0043005 {is_inferred="true"} ! neuron projection [Term] id: GO:0032421 ! stereocilium bundle @@ -23713,8 +23725,8 @@ [Term] id: GO:0032426 ! stereocilium tip is_a: GO:0044422 {is_inferred="true"} ! organelle part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0032429 ! regulation of phospholipase A2 activity @@ -23726,6 +23738,10 @@ is_a: GO:0032429 {is_inferred="true"} ! regulation of phospholipase A2 activity [Term] +id: GO:0032433 ! filopodium tip +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0032434 ! regulation of proteasomal ubiquitin-dependent protein catabolic process is_a: GO:0061136 {is_inferred="true"} ! regulation of proteasomal protein catabolic process @@ -23896,11 +23912,11 @@ [Term] id: GO:0032528 ! microvillus organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0032530 ! regulation of microvillus organization -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0032531 ! regulation of follicle cell microvillus organization @@ -24752,7 +24768,7 @@ [Term] id: GO:0032796 ! uropod organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0032803 ! regulation of low-density lipoprotein particle receptor catabolic process @@ -24922,6 +24938,10 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] +id: GO:0032838 ! cell projection cytoplasm +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0032839 ! dendrite cytoplasm is_a: GO:0032838 {is_inferred="true"} ! cell projection cytoplasm is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -26070,6 +26090,10 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] +id: GO:0033267 ! axon part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0033271 ! myo-inositol phosphate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport @@ -28792,6 +28816,10 @@ is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] +id: GO:0035316 ! non-sensory hair organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization + +[Term] id: GO:0035322 ! mesenchymal cell migration involved in limb bud formation is_a: GO:0090497 {is_inferred="true"} ! mesenchymal cell migration @@ -29368,6 +29396,10 @@ is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection [Term] +id: GO:0035619 ! root hair tip +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0035622 ! intrahepatic bile duct development is_a: GO:0061009 {is_inferred="true"} ! common bile duct development @@ -29895,7 +29927,7 @@ [Term] id: GO:0035996 ! rhabdomere microvillus -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0035998 ! 7,8-dihydroneopterin 3'-triphosphate biosynthetic process @@ -32798,6 +32830,10 @@ is_a: GO:0042999 {is_inferred="true"} ! regulation of Golgi to plasma membrane CFTR protein transport [Term] +id: GO:0043005 ! neuron projection +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0043011 ! myeloid dendritic cell differentiation is_a: GO:0097028 {is_inferred="true"} ! dendritic cell differentiation @@ -33075,8 +33111,13 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0043197 ! dendritic spine +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0043198 ! dendritic shaft is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0043199 ! sulfate binding @@ -33390,7 +33431,7 @@ [Term] id: GO:0043332 ! mating projection tip is_a: GO:0030427 {is_inferred="true"} ! site of polarized growth -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0043370 ! regulation of CD4-positive, alpha-beta T cell differentiation @@ -34508,14 +34549,17 @@ [Term] id: GO:0044292 ! dendrite terminus is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0044306 ! neuron projection terminus is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0044307 ! dendritic branch is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0044319 ! wound healing, spreading of cells @@ -34525,11 +34569,13 @@ id: GO:0044326 ! dendritic spine neck is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0044327 ! dendritic spine head is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0044328 ! canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration @@ -34658,6 +34704,10 @@ is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part [Term] +id: GO:0044441 ! ciliary part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0044443 ! pilus part is_a: GO:0044463 {is_inferred="true"} ! cell projection part @@ -45849,7 +45899,7 @@ [Term] id: GO:0060091 ! kinocilium -is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0043005 {is_inferred="true"} ! neuron projection [Term] id: GO:0060092 ! regulation of synaptic transmission, glycinergic @@ -45897,6 +45947,10 @@ is_a: GO:0002066 {is_inferred="true"} ! columnar/cuboidal epithelial cell development [Term] +id: GO:0060121 ! vestibular receptor cell stereocilium organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization + +[Term] id: GO:0060123 ! regulation of growth hormone secretion is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion @@ -45989,8 +46043,7 @@ [Term] id: GO:0060171 ! stereocilium membrane -is_a: GO:0031253 {is_inferred="true"} ! cell projection membrane -is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0032589 {is_inferred="true"} ! neuron projection membrane [Term] id: GO:0060176 ! regulation of aggregation involved in sorocarp development @@ -47960,6 +48013,7 @@ id: GO:0061001 ! regulation of dendritic spine morphogenesis is_a: GO:0048814 {is_inferred="true"} ! regulation of dendrite morphogenesis is_a: GO:0060998 {is_inferred="true"} ! regulation of dendritic spine development +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0061002 ! negative regulation of dendritic spine morphogenesis @@ -48778,7 +48832,7 @@ [Term] id: GO:0061455 ! integral component of muscle cell projection membrane -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0061456 ! mesenchymal stem cell migration involved in uteric bud morphogenesis @@ -49178,6 +49232,7 @@ [Term] id: GO:0061845 ! neuron projection branch point is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0061846 ! dendritic spine cytoplasm @@ -49191,13 +49246,13 @@ [Term] id: GO:0061850 ! growth cone leading edge is_a: GO:0031252 {is_inferred="true"} ! cell leading edge -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0061851 ! leading edge of lamellipodium is_a: GO:0031252 {is_inferred="true"} ! cell leading edge -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0061853 ! regulation of neuroblast migration @@ -50549,6 +50604,10 @@ is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] +id: GO:0070687 ! macropinocytic cup cytoskeleton +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0070689 ! L-threonine catabolic process to propionate is_a: GO:0019541 {is_inferred="true"} ! propionate metabolic process @@ -50887,6 +50946,10 @@ is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport [Term] +id: GO:0070867 ! mating projection tip membrane +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0070868 ! heterochromatin organization involved in chromatin silencing is_a: GO:0070828 {is_inferred="true"} ! heterochromatin organization is_a: GO:0097549 {is_inferred="true"} ! chromatin organization involved in negative regulation of transcription @@ -52683,6 +52746,7 @@ [Term] id: GO:0071598 ! neuronal ribonucleoprotein granule is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0071599 ! otic vesicle development @@ -57317,6 +57381,10 @@ is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] +id: GO:0090404 ! pollen tube tip +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0090406 ! pollen tube is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection @@ -57634,6 +57702,10 @@ is_a: GO:0003002 {is_inferred="true"} ! regionalization [Term] +id: GO:0090723 ! growth cone part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:0090730 ! Las1 complex is_a: GO:0044445 {is_inferred="true"} ! cytosolic part @@ -57717,7 +57789,7 @@ [Term] id: GO:0097061 ! dendritic spine organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0097066 ! response to thyroid hormone @@ -58163,7 +58235,7 @@ [Term] id: GO:0097444 ! spine apparatus is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0097445 ! presynaptic active zone dense projection @@ -58228,6 +58300,10 @@ is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] +id: GO:0097581 ! lamellipodium organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization + +[Term] id: GO:0097606 ! positive regulation of nuclear envelope permeability is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport @@ -58317,6 +58393,10 @@ is_a: GO:0043229 {is_inferred="true"} ! intracellular organelle [Term] +id: GO:0097733 ! photoreceptor cell cilium +is_a: GO:0043005 {is_inferred="true"} ! neuron projection + +[Term] id: GO:0097740 ! paraflagellar rod is_a: GO:0044441 {is_inferred="true"} ! ciliary part @@ -59148,9 +59228,9 @@ [Term] id: GO:0098836 ! cytoskeleton of dendritic spine -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part is_a: GO:0099571 {is_inferred="true"} ! postsynaptic cytoskeleton +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098837 ! postsynaptic recycling endosome @@ -59214,7 +59294,8 @@ [Term] id: GO:0098859 ! actin filament bundle of actin-based cell projection -is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0097518 {is_inferred="true"} ! parallel actin filament bundle +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098860 ! actin filament bundle of stereocilium @@ -59340,10 +59421,10 @@ [Term] id: GO:0098897 ! spine apparatus membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle is_a: GO:0098805 {is_inferred="true"} ! whole membrane +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098898 ! dense core granule lumen @@ -59352,9 +59433,9 @@ [Term] id: GO:0098899 ! spine apparatus lumen is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic vesicle lumen is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098900 ! regulation of action potential @@ -59465,8 +59546,8 @@ id: GO:0098929 ! extrinsic component of spine apparatus membrane is_a: GO:0031312 {is_inferred="true"} ! extrinsic component of organelle membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098930 ! axonal transport @@ -59564,8 +59645,8 @@ id: GO:0098952 ! intrinsic component of spine apparatus membrane is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:0098953 ! receptor diffusion trapping @@ -61047,10 +61128,12 @@ [Term] id: GO:0120031 ! plasma membrane bounded cell projection assembly is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly @@ -61064,6 +61147,10 @@ is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] +id: GO:0120036 ! plasma membrane bounded cell projection organization +is_a: GO:0030030 {is_inferred="true"} ! cell projection organization + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport @@ -69223,6 +69310,10 @@ is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] +id: GO:1901588 ! dendritic microtubule +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part + +[Term] id: GO:1901589 ! axon microtubule bundle is_a: GO:0033267 {is_inferred="true"} ! axon part is_a: GO:0097427 {is_inferred="true"} ! microtubule bundle @@ -71128,6 +71219,7 @@ id: GO:1901962 ! S-adenosyl-L-methionine transmembrane transport is_a: GO:0015805 {is_inferred="true"} ! S-adenosyl-L-methionine transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:1901963 ! regulation of cell proliferation involved in outflow tract morphogenesis @@ -74817,8 +74909,8 @@ [Term] id: GO:1902737 ! dendritic filopodium is_a: GO:0030175 {is_inferred="true"} ! filopodium -is_a: GO:0044463 {is_inferred="true"} ! cell projection part -is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0043005 {is_inferred="true"} ! neuron projection +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:1902739 ! regulation of interferon-alpha secretion @@ -74843,7 +74935,7 @@ [Term] id: GO:1902743 ! regulation of lamellipodium organization -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1902744 ! negative regulation of lamellipodium organization @@ -75828,7 +75920,7 @@ [Term] id: GO:1902950 ! regulation of dendritic spine maintenance -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1902951 ! negative regulation of dendritic spine maintenance @@ -89318,10 +89410,10 @@ [Term] id: GO:1905796 ! regulation of intraciliary anterograde transport -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport is_a: GO:0060632 {is_inferred="true"} ! regulation of microtubule-based movement +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1905797 ! negative regulation of intraciliary anterograde transport @@ -89341,10 +89433,10 @@ [Term] id: GO:1905799 ! regulation of intraciliary retrograde transport -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport is_a: GO:0060632 {is_inferred="true"} ! regulation of microtubule-based movement +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1905800 ! negative regulation of intraciliary retrograde transport @@ -89680,7 +89772,7 @@ [Term] id: GO:1905863 ! invadopodium organization -is_a: GO:0030030 {is_inferred="true"} ! cell projection organization +is_a: GO:0120036 {is_inferred="true"} ! plasma membrane bounded cell projection organization [Term] id: GO:1905864 ! regulation of ATG1/ULK1 kinase complex assembly @@ -90006,7 +90098,7 @@ [Term] id: GO:1905927 ! regulation of invadopodium disassembly -is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0120035 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection organization [Term] id: GO:1905928 ! negative regulation of invadopodium disassembly @@ -90719,8 +90811,8 @@ [Term] id: GO:1990503 ! dendritic lamellar body -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:1990504 ! dense core granule exocytosis @@ -90963,6 +91055,7 @@ [Term] id: GO:1990635 ! proximal dendrite is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:1990658 ! transnitrosylase complex @@ -91070,6 +91163,10 @@ is_a: GO:0031134 {is_inferred="true"} ! sister chromatid biorientation [Term] +id: GO:1990761 ! growth cone lamellipodium +is_a: GO:0043005 {is_inferred="true"} ! neuron projection + +[Term] id: GO:1990771 ! clathrin-dependent extracellular exosome endocytosis is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization is_a: GO:0072583 {is_inferred="true"} ! clathrin-dependent endocytosis @@ -91081,8 +91178,8 @@ [Term] id: GO:1990780 ! cytoplasmic side of dendritic spine plasma membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:1990784 ! response to dsDNA @@ -91129,6 +91226,10 @@ is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] +id: GO:1990812 ! growth cone filopodium +is_a: GO:0043005 {is_inferred="true"} ! neuron projection + +[Term] id: GO:1990818 ! L-arginine transmembrane export from vacuole is_a: GO:1903400 {is_inferred="true"} ! L-arginine transmembrane transport @@ -91135,6 +91236,7 @@ [Term] id: GO:1990819 ! actin fusion focus is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part +is_a: GO:0120038 {is_inferred="true"} ! plasma membrane bounded cell projection part [Term] id: GO:1990822 ! basic amino acid transmembrane transport @@ -91200,6 +91302,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:1990906 ! accessory outer segment +is_a: GO:0043005 {is_inferred="true"} ! neuron projection + +[Term] id: GO:1990913 ! sperm head plasma membrane is_a: GO:0097223 {is_inferred="true"} ! sperm part is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40857) +++ go_inferences.obo (working copy) @@ -60923,6 +60923,11 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] +id: GO:0106011 ! regulation of protein localization to medial cortex +is_a: GO:1901900 {is_inferred="true"} ! regulation of protein localization to cell division site +is_a: GO:1904776 {is_inferred="true"} ! regulation of protein localization to cell cortex + +[Term] id: GO:0110001 ! toxin-antitoxin complex is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40843) +++ go_inferences.obo (working copy) @@ -241,7 +241,6 @@ [Term] id: GO:0000066 ! mitochondrial ornithine transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0015822 {is_inferred="true"} ! ornithine transport [Term] @@ -7642,7 +7641,7 @@ [Term] id: GO:0006839 ! mitochondrial transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0006842 ! tricarboxylic acid transport @@ -7650,7 +7649,6 @@ [Term] id: GO:0006843 ! mitochondrial citrate transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0015746 {is_inferred="true"} ! citrate transport [Term] @@ -7666,6 +7664,10 @@ is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport [Term] +id: GO:0006850 ! mitochondrial pyruvate transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0006851 ! mitochondrial calcium ion transmembrane transport is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -7769,10 +7771,6 @@ is_a: GO:0016482 {is_inferred="true"} ! cytosolic transport [Term] -id: GO:0006896 ! Golgi to vacuole transport -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport - -[Term] id: GO:0006904 ! vesicle docking involved in exocytosis is_a: GO:0048278 {is_inferred="true"} ! vesicle docking @@ -7894,11 +7892,11 @@ [Term] id: GO:0007034 ! vacuolar transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0007038 ! endocytosed protein transport to vacuole -is_a: GO:0015031 {is_inferred="true"} ! protein transport +is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport [Term] id: GO:0007040 ! lysosome organization @@ -8641,7 +8639,6 @@ id: GO:0008333 ! endosome to lysosome transport is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0008335 ! female germline ring canal stabilization @@ -16099,6 +16096,10 @@ is_a: GO:0098827 {is_inferred="true"} ! endoplasmic reticulum subcompartment [Term] +id: GO:0016031 ! tRNA import into mitochondrion +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0016042 ! lipid catabolic process is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process @@ -16487,7 +16488,7 @@ [Term] id: GO:0016197 ! endosomal transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0016202 ! regulation of striated muscle tissue development @@ -19941,6 +19942,7 @@ [Term] id: GO:0030150 ! protein import into mitochondrial matrix +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -23862,7 +23864,7 @@ is_a: GO:0045185 {is_inferred="true"} ! maintenance of protein location [Term] -id: GO:0032510 ! endosome to lysosome transport via multivesicular body sorting pathway +id: GO:0032509 ! endosome transport via multivesicular body sorting pathway is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -25290,11 +25292,13 @@ [Term] id: GO:0032974 ! amino acid transmembrane export from vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044746 {is_inferred="true"} ! amino acid transmembrane export [Term] id: GO:0032975 ! amino acid transmembrane import into vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import @@ -28071,7 +28075,6 @@ [Term] id: GO:0034487 ! vacuolar amino acid transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport -is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport [Term] id: GO:0034488 ! basic amino acid transmembrane export from vacuole @@ -29727,6 +29730,7 @@ [Term] id: GO:0035928 ! rRNA import into mitochondrion is_a: GO:0051029 {is_inferred="true"} ! rRNA transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0035934 ! corticosterone secretion @@ -33373,7 +33377,6 @@ [Term] id: GO:0043328 ! protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway is_a: GO:0006623 {is_inferred="true"} ! protein targeting to vacuole -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0043329 ! protein targeting to membrane involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway @@ -33931,7 +33934,7 @@ [Term] id: GO:0043574 ! peroxisomal transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0043579 ! elaioplast organization @@ -35049,6 +35052,7 @@ [Term] id: GO:0045022 ! early endosome to late endosome transport +is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0016482 {is_inferred="true"} ! cytosolic transport is_a: GO:0098927 {is_inferred="true"} ! vesicle-mediated transport between endosomal compartments @@ -35066,6 +35070,7 @@ [Term] id: GO:0045039 ! protein import into mitochondrial inner membrane +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0044743 {is_inferred="true"} ! protein transmembrane import into intracellular organelle is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -35072,11 +35077,13 @@ [Term] id: GO:0045040 ! protein import into mitochondrial outer membrane +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0045041 ! protein import into mitochondrial intermembrane space +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -41146,10 +41153,6 @@ is_a: GO:0048214 {is_inferred="true"} ! regulation of Golgi vesicle fusion to target membrane [Term] -id: GO:0048227 ! plasma membrane to endosome transport -is_a: GO:0016197 {is_inferred="true"} ! endosomal transport - -[Term] id: GO:0048235 ! pollen sperm cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism @@ -41187,7 +41190,6 @@ [Term] id: GO:0048250 ! mitochondrial iron ion transport is_a: GO:0006826 {is_inferred="true"} ! iron ion transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport [Term] id: GO:0048252 ! lauric acid metabolic process @@ -43393,6 +43395,10 @@ is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] +id: GO:0051169 ! nuclear transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport + +[Term] id: GO:0051174 ! regulation of phosphorus metabolic process is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process @@ -48850,6 +48856,7 @@ [Term] id: GO:0061502 ! early endosome to recycling endosome transport +is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0016482 {is_inferred="true"} ! cytosolic transport is_a: GO:0098927 {is_inferred="true"} ! vesicle-mediated transport between endosomal compartments @@ -49092,7 +49099,6 @@ [Term] id: GO:0061741 ! chaperone-mediated protein transport involved in chaperone-mediated autophagy -is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport [Term] @@ -57262,7 +57268,7 @@ [Term] id: GO:0090374 ! oligopeptide export from mitochondrion -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:0035672 {is_inferred="true"} ! oligopeptide transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -57560,6 +57566,10 @@ is_a: GO:0098533 {is_inferred="true"} ! ATPase dependent transmembrane transport complex [Term] +id: GO:0090539 ! peptide pheromone export by transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:0090554 ! phosphatidylcholine-translocating ATPase activity is_a: GO:0004012 {is_inferred="true"} ! phospholipid-translocating ATPase activity is_a: GO:0008525 {is_inferred="true"} ! phosphatidylcholine transporter activity @@ -59452,10 +59462,6 @@ is_a: GO:0099555 {is_inferred="true"} ! trans-synaptic signaling by nitric oxide, modulating synaptic transmission [Term] -id: GO:0098927 ! vesicle-mediated transport between endosomal compartments -is_a: GO:0016197 {is_inferred="true"} ! endosomal transport - -[Term] id: GO:0098929 ! extrinsic component of spine apparatus membrane is_a: GO:0031312 {is_inferred="true"} ! extrinsic component of organelle membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part @@ -59967,17 +59973,16 @@ [Term] id: GO:0099074 ! mitochondrion to lysosome transport +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport is_a: GO:0099075 {is_inferred="true"} ! mitochondrion-derived vesicle mediated transport [Term] id: GO:0099075 ! mitochondrion-derived vesicle mediated transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport [Term] id: GO:0099076 ! mitochondrion to peroxisome transport -is_a: GO:0043574 {is_inferred="true"} ! peroxisomal transport is_a: GO:0099075 {is_inferred="true"} ! mitochondrion-derived vesicle mediated transport [Term] @@ -60032,7 +60037,7 @@ [Term] id: GO:0099093 ! mitochondrial calcium release is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transmembrane transport -is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol +is_a: GO:0097553 {is_inferred="true"} ! calcium ion transmembrane import into cytosol is_a: GO:1901660 {is_inferred="true"} ! calcium ion export [Term] @@ -60267,10 +60272,6 @@ is_a: GO:0098960 {is_inferred="true"} ! postsynaptic neurotransmitter receptor activity [Term] -id: GO:0099532 ! synaptic vesicle endosomal processing -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0099533 ! positive regulation of presynaptic cytosolic calcium concentration is_a: GO:0007204 {is_inferred="true"} ! positive regulation of cytosolic calcium ion concentration is_a: GO:0099509 {is_inferred="true"} ! regulation of presynaptic cytosolic calcium ion concentration @@ -60420,10 +60421,6 @@ is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] -id: GO:0099592 ! endocytosed synaptic vesicle processing via endosome -is_a: GO:0046907 {is_inferred="true"} ! intracellular transport - -[Term] id: GO:0099601 ! regulation of neurotransmitter receptor activity is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity @@ -60507,9 +60504,9 @@ [Term] id: GO:0099638 ! endosome to plasma membrane protein transport -is_a: GO:0015031 {is_inferred="true"} ! protein transport -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport +is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1990126 {is_inferred="true"} ! retrograde transport, endosome to plasma membrane [Term] @@ -60545,6 +60542,7 @@ [Term] id: GO:0099646 ! neurotransmitter receptor transport, plasma membrane to endosome +is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0036010 {is_inferred="true"} ! protein localization to endosome is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle @@ -66496,14 +66494,14 @@ [Term] id: GO:1901028 ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:0010821 {is_inferred="true"} ! regulation of mitochondrion organization +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0046902 {is_inferred="true"} ! regulation of mitochondrial membrane permeability -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport is_a: GO:2001233 {is_inferred="true"} ! regulation of apoptotic signaling pathway [Term] id: GO:1901029 ! negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:2001234 {is_inferred="true"} ! negative regulation of apoptotic signaling pathway @@ -66510,7 +66508,7 @@ [Term] id: GO:1901030 ! positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:2001235 {is_inferred="true"} ! positive regulation of apoptotic signaling pathway @@ -71137,7 +71135,7 @@ [Term] id: GO:1901965 ! endoplasmic reticulum to chloroplast transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:1901966 ! regulation of cellular response to iron ion starvation @@ -72974,6 +72972,7 @@ [Term] id: GO:1902334 ! fructose export from vacuole to cytoplasm +is_a: GO:0007034 {is_inferred="true"} ! vacuolar transport is_a: GO:0015755 {is_inferred="true"} ! fructose transport is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -74976,7 +74975,7 @@ [Term] id: GO:1902774 ! late endosome to lysosome transport -is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0008333 {is_inferred="true"} ! endosome to lysosome transport is_a: GO:0045324 {is_inferred="true"} ! late endosome to vacuole transport [Term] @@ -77512,16 +77511,16 @@ [Term] id: GO:1903335 ! regulation of vacuolar transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport [Term] id: GO:1903336 ! negative regulation of vacuolar transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport [Term] id: GO:1903337 ! positive regulation of vacuolar transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport [Term] @@ -77921,7 +77920,6 @@ [Term] id: GO:1903415 ! flavonoid transport from endoplasmic reticulum to plant-type vacuole -is_a: GO:0007034 {is_inferred="true"} ! vacuolar transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] @@ -79732,7 +79730,7 @@ is_a: GO:2000637 {is_inferred="true"} ! positive regulation of gene silencing by miRNA [Term] -id: GO:1903801 ! L-leucine import across membrane +id: GO:1903801 ! L-leucine import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0098713 {is_inferred="true"} ! leucine import across plasma membrane is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport @@ -85123,23 +85121,31 @@ [Term] id: GO:1904916 ! transmembrane L-lysine transport from lysosomal lumen to cytosol is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:1904917 ! transmembrane L-arginine transport from lysosomal lumen to cytosol is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1903400 {is_inferred="true"} ! L-arginine transmembrane transport [Term] id: GO:1904918 ! transmembrane L-histidine transport from lysosomal lumen to cytosol is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1904919 ! transmembrane L-cystine transport from lysosomal lumen to cytosol is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport is_a: GO:0015811 {is_inferred="true"} ! L-cystine transport +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1904920 ! regulation of MAPK cascade involved in axon regeneration @@ -85267,8 +85273,10 @@ [Term] id: GO:1904947 ! folic acid import into mitochondrion -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0015884 {is_inferred="true"} ! folic acid transport +is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1904948 ! midbrain dopaminergic neuron differentiation @@ -89071,20 +89079,20 @@ [Term] id: GO:1905749 ! regulation of endosome to plasma membrane protein transport -is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport +is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane [Term] id: GO:1905750 ! negative regulation of endosome to plasma membrane protein transport -is_a: GO:0051224 {is_inferred="true"} ! negative regulation of protein transport is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane +is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport [Term] id: GO:1905751 ! positive regulation of endosome to plasma membrane protein transport -is_a: GO:0051222 {is_inferred="true"} ! positive regulation of protein transport is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane +is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport [Term] @@ -90767,11 +90775,11 @@ [Term] id: GO:1990542 ! mitochondrial transmembrane transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] id: GO:1990543 ! mitochondrial S-adenosyl-L-methionine transmembrane transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -90844,6 +90852,7 @@ [Term] id: GO:1990557 ! mitochondrial sulfate transmembrane transport +is_a: GO:1902358 {is_inferred="true"} ! sulfate transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -96703,16 +96712,17 @@ [Term] id: GO:2001135 ! regulation of endocytic recycling +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport [Term] id: GO:2001136 ! negative regulation of endocytic recycling -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:2001135 {is_inferred="true"} ! regulation of endocytic recycling [Term] id: GO:2001137 ! positive regulation of endocytic recycling -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:2001135 {is_inferred="true"} ! regulation of endocytic recycling [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40831) +++ go_inferences.obo (working copy) @@ -22209,7 +22209,7 @@ is_a: GO:2000134 {is_inferred="true"} ! negative regulation of G1/S transition of mitotic cell cycle [Term] -id: GO:0031569 ! G2 cell size control checkpoint +id: GO:0031569 ! mitotic G2 cell size control checkpoint is_a: GO:0010972 {is_inferred="true"} ! negative regulation of G2/M transition of mitotic cell cycle is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40818) +++ go_inferences.obo (working copy) @@ -11998,18 +11998,19 @@ [Term] id: GO:0010591 ! regulation of lamellipodium assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly is_a: GO:1902743 {is_inferred="true"} ! regulation of lamellipodium organization [Term] id: GO:0010592 ! positive regulation of lamellipodium assembly is_a: GO:0010591 {is_inferred="true"} ! regulation of lamellipodium assembly -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1902745 {is_inferred="true"} ! positive regulation of lamellipodium organization [Term] id: GO:0010593 ! negative regulation of lamellipodium assembly is_a: GO:0010591 {is_inferred="true"} ! regulation of lamellipodium assembly +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1902744 {is_inferred="true"} ! negative regulation of lamellipodium organization [Term] @@ -21576,18 +21577,17 @@ [Term] id: GO:0031272 ! regulation of pseudopodium assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0031273 ! negative regulation of pseudopodium assembly is_a: GO:0031272 {is_inferred="true"} ! regulation of pseudopodium assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0031274 ! positive regulation of pseudopodium assembly is_a: GO:0031272 {is_inferred="true"} ! regulation of pseudopodium assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0031275 ! regulation of lateral pseudopodium assembly @@ -21836,7 +21836,7 @@ [Term] id: GO:0031383 ! regulation of mating projection assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly is_a: GO:1905708 {is_inferred="true"} ! regulation of cell morphogenesis involved in conjugation with cellular fusion [Term] @@ -23911,7 +23911,7 @@ [Term] id: GO:0032534 ! regulation of microvillus assembly is_a: GO:0032530 {is_inferred="true"} ! regulation of microvillus organization -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0032538 ! regulation of host-seeking behavior @@ -36971,7 +36971,7 @@ [Term] id: GO:0045724 ! positive regulation of cilium assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly @@ -44093,18 +44093,17 @@ [Term] id: GO:0051489 ! regulation of filopodium assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0051490 ! negative regulation of filopodium assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization is_a: GO:0051489 {is_inferred="true"} ! regulation of filopodium assembly +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0051491 ! positive regulation of filopodium assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0051489 {is_inferred="true"} ! regulation of filopodium assembly +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly [Term] id: GO:0051492 ! regulation of stress fiber assembly @@ -61047,6 +61046,21 @@ is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly [Term] +id: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly +is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly + +[Term] +id: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly +is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly + +[Term] +id: GO:0120034 ! positive regulation of plasma membrane bounded cell projection assembly +is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport @@ -61209,17 +61223,16 @@ [Term] id: GO:1900027 ! regulation of ruffle assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1900028 ! negative regulation of ruffle assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1900027 {is_inferred="true"} ! regulation of ruffle assembly [Term] id: GO:1900029 ! positive regulation of ruffle assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1900027 {is_inferred="true"} ! regulation of ruffle assembly [Term] @@ -71388,12 +71401,12 @@ [Term] id: GO:1902017 ! regulation of cilium assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] id: GO:1902018 ! negative regulation of cilium assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly @@ -75646,11 +75659,10 @@ [Term] id: GO:1902917 ! positive regulation of mating projection assembly is_a: GO:0031139 {is_inferred="true"} ! positive regulation of conjugation with cellular fusion -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization is_a: GO:0031383 {is_inferred="true"} ! regulation of mating projection assembly -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1902918 ! poly(5-hydroxyvalerate) metabolic process @@ -79248,14 +79260,13 @@ [Term] id: GO:1903697 ! negative regulation of microvillus assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization is_a: GO:0032534 {is_inferred="true"} ! regulation of microvillus assembly +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1903698 ! positive regulation of microvillus assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization is_a: GO:0032534 {is_inferred="true"} ! regulation of microvillus assembly -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1903699 ! tarsal gland development @@ -81463,17 +81474,16 @@ [Term] id: GO:1904170 ! regulation of bleb assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1904171 ! negative regulation of bleb assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1904170 {is_inferred="true"} ! regulation of bleb assembly [Term] id: GO:1904172 ! positive regulation of bleb assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1904170 {is_inferred="true"} ! regulation of bleb assembly [Term] @@ -89969,17 +89979,16 @@ [Term] id: GO:1905924 ! regulation of invadopodium assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:1905925 ! negative regulation of invadopodium assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1905924 {is_inferred="true"} ! regulation of invadopodium assembly [Term] id: GO:1905926 ! positive regulation of invadopodium assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1905924 {is_inferred="true"} ! regulation of invadopodium assembly [Term] @@ -93851,17 +93860,16 @@ [Term] id: GO:2000547 ! regulation of dendritic cell dendrite assembly -is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:0120032 {is_inferred="true"} ! regulation of plasma membrane bounded cell projection assembly [Term] id: GO:2000548 ! negative regulation of dendritic cell dendrite assembly -is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0120033 {is_inferred="true"} ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:2000547 {is_inferred="true"} ! regulation of dendritic cell dendrite assembly [Term] id: GO:2000549 ! positive regulation of dendritic cell dendrite assembly -is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0120034 {is_inferred="true"} ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:2000547 {is_inferred="true"} ! regulation of dendritic cell dendrite assembly [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40806) +++ go_inferences.obo (working copy) @@ -8191,11 +8191,6 @@ is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] -id: GO:0007288 ! sperm axoneme assembly -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0007289 ! spermatid nucleus differentiation is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -19821,11 +19816,11 @@ [Term] id: GO:0030032 ! lamellipodium assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0030033 ! microvillus assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0030034 ! microvillar actin bundle assembly @@ -19833,7 +19828,7 @@ [Term] id: GO:0030035 ! microspike assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0030036 ! actin cytoskeleton organization @@ -21577,7 +21572,7 @@ [Term] id: GO:0031269 ! pseudopodium assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0031272 ! regulation of pseudopodium assembly @@ -21836,8 +21831,8 @@ id: GO:0031382 ! mating projection assembly is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0031383 ! regulation of mating projection assembly @@ -22758,7 +22753,7 @@ [Term] id: GO:0032060 ! bleb assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0032065 ! cortical protein anchoring @@ -23867,6 +23862,10 @@ is_a: GO:0045185 {is_inferred="true"} ! maintenance of protein location [Term] +id: GO:0032510 ! endosome to lysosome transport via multivesicular body sorting pathway +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0032515 ! negative regulation of phosphoprotein phosphatase activity is_a: GO:0010923 {is_inferred="true"} ! negative regulation of phosphatase activity is_a: GO:0035308 {is_inferred="true"} ! negative regulation of protein dephosphorylation @@ -28030,6 +28029,10 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:0034460 ! uropod assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly + +[Term] id: GO:0034462 ! small-subunit processome assembly is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly @@ -28582,7 +28585,7 @@ [Term] id: GO:0035082 ! axoneme assembly -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] id: GO:0035091 ! phosphatidylinositol binding @@ -28688,7 +28691,7 @@ [Term] id: GO:0035231 ! cytoneme assembly is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0035232 ! germ cell attraction @@ -33370,6 +33373,7 @@ [Term] id: GO:0043328 ! protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway is_a: GO:0006623 {is_inferred="true"} ! protein targeting to vacuole +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0043329 ! protein targeting to membrane involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway @@ -40588,7 +40592,7 @@ [Term] id: GO:0046847 ! filopodium assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0046848 ! hydroxyapatite binding @@ -46220,9 +46224,9 @@ [Term] id: GO:0060271 ! cilium assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly is_a: GO:0044782 {is_inferred="true"} ! cilium organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly [Term] id: GO:0060278 ! regulation of ovulation @@ -57647,6 +57651,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0097026 ! dendritic cell dendrite assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly + +[Term] id: GO:0097029 ! mature conventional dendritic cell differentiation is_a: GO:0002573 {is_inferred="true"} ! myeloid leukocyte differentiation @@ -57834,6 +57842,10 @@ is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] +id: GO:0097178 ! ruffle assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly + +[Term] id: GO:0097184 ! response to azide is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound @@ -61031,6 +61043,10 @@ is_a: GO:1902600 {is_inferred="true"} ! hydrogen ion transmembrane transport [Term] +id: GO:0120031 ! plasma membrane bounded cell projection assembly +is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport @@ -89707,7 +89723,7 @@ [Term] id: GO:1905877 ! invadopodium assembly -is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0120031 {is_inferred="true"} ! plasma membrane bounded cell projection assembly is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40803) +++ go_inferences.obo (working copy) @@ -20325,8 +20325,8 @@ [Term] id: GO:0030474 ! spindle pole body duplication +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly is_a: GO:0051300 {is_inferred="true"} ! spindle pole body organization -is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:0030476 ! ascospore wall assembly @@ -21223,16 +21223,17 @@ [Term] id: GO:0031023 ! microtubule organizing center organization -is_a: GO:0006996 {is_inferred="true"} ! organelle organization +is_a: GO:0016043 {is_inferred="true"} ! cellular component organization [Term] id: GO:0031024 ! interphase microtubule organizing center assembly -is_a: GO:0070925 {is_inferred="true"} ! organelle assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] id: GO:0031025 ! equatorial microtubule organizing center disassembly +is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization -is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0031026 ! glutamate synthase complex @@ -44542,6 +44543,7 @@ [Term] id: GO:0051642 ! centrosome localization +is_a: GO:0051640 {is_inferred="true"} ! organelle localization is_a: GO:0061842 {is_inferred="true"} ! microtubule organizing center localization [Term] @@ -49162,7 +49164,7 @@ [Term] id: GO:0061842 ! microtubule organizing center localization -is_a: GO:0051640 {is_inferred="true"} ! organelle localization +is_a: GO:0051179 {is_inferred="true"} ! localization [Term] id: GO:0061845 ! neuron projection branch point @@ -50462,7 +50464,6 @@ [Term] id: GO:0070632 ! establishment of spindle pole body localization -is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization is_a: GO:0070631 {is_inferred="true"} ! spindle pole body localization [Term] @@ -81522,8 +81523,8 @@ [Term] id: GO:1904185 ! equatorial microtubule organizing center assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization -is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:1904186 ! post-anaphase microtubule array organization ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40796) +++ go_inferences.obo (working copy) @@ -57608,14 +57608,6 @@ is_a: GO:0030154 {is_inferred="true"} ! cell differentiation [Term] -id: GO:0090688 ! cleavage furrow rim -is_a: GO:0032155 {is_inferred="true"} ! cell division site part - -[Term] -id: GO:0090689 ! cleavage furrow leading edge -is_a: GO:0032155 {is_inferred="true"} ! cell division site part - -[Term] id: GO:0090696 ! post-embryonic plant organ development is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40694) +++ go_inferences.obo (working copy) @@ -22204,6 +22204,15 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] +id: GO:0031567 ! mitotic cell size control checkpoint +is_a: GO:0007093 {is_inferred="true"} ! mitotic cell cycle checkpoint + +[Term] +id: GO:0031568 ! G1 cell size control checkpoint +is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint +is_a: GO:2000134 {is_inferred="true"} ! negative regulation of G1/S transition of mitotic cell cycle + +[Term] id: GO:0031569 ! G2 cell size control checkpoint is_a: GO:0010972 {is_inferred="true"} ! negative regulation of G2/M transition of mitotic cell cycle is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40679) +++ go_inferences.obo (working copy) @@ -22752,7 +22752,7 @@ [Term] id: GO:0032065 ! cortical protein anchoring -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein +is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell [Term] id: GO:0032066 ! nucleolus to nucleoplasm transport @@ -29063,10 +29063,6 @@ is_a: GO:0098661 {is_inferred="true"} ! inorganic anion transmembrane transport [Term] -id: GO:0035437 ! maintenance of protein localization in endoplasmic reticulum -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein - -[Term] id: GO:0035438 ! cyclic-di-GMP binding is_a: GO:0030551 {is_inferred="true"} ! cyclic nucleotide binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding @@ -43480,10 +43476,6 @@ is_a: GO:0046914 {is_inferred="true"} ! transition metal ion binding [Term] -id: GO:0051220 ! cytoplasmic sequestering of protein -is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell - -[Term] id: GO:0051223 ! regulation of protein transport is_a: GO:0090087 {is_inferred="true"} ! regulation of peptide transport @@ -54406,10 +54398,6 @@ is_a: GO:0072598 {is_inferred="true"} ! protein localization to chloroplast [Term] -id: GO:0072597 ! maintenance of protein location in chloroplast -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein - -[Term] id: GO:0072598 ! protein localization to chloroplast is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle @@ -54426,10 +54414,6 @@ is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion [Term] -id: GO:0072656 ! maintenance of protein location in mitochondrion -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein - -[Term] id: GO:0072659 ! protein localization to plasma membrane is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization @@ -54448,10 +54432,6 @@ is_a: GO:0072662 {is_inferred="true"} ! protein localization to peroxisome [Term] -id: GO:0072664 ! maintenance of protein location in peroxisome -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein - -[Term] id: GO:0072665 ! protein localization to vacuole is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle @@ -54460,10 +54440,6 @@ is_a: GO:0072665 {is_inferred="true"} ! protein localization to vacuole [Term] -id: GO:0072667 ! maintenance of protein location in vacuole -is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein - -[Term] id: GO:0072672 ! neutrophil extravasation is_a: GO:1990266 {is_inferred="true"} ! neutrophil migration @@ -87877,7 +87853,6 @@ [Term] id: GO:1905481 ! cytoplasmic sequestering of protein involved in mitotic DNA replication checkpoint is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:1905482 ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint @@ -87988,7 +87963,6 @@ [Term] id: GO:1905507 ! cytoplasmic sequestering of protein involved in mitotic G2 DNA damage checkpoint -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process is_a: GO:1905482 {is_inferred="true"} ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40522) +++ go_inferences.obo (working copy) @@ -81896,6 +81896,7 @@ id: GO:1904259 ! regulation of basement membrane assembly involved in embryonic body morphogenesis is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development +is_a: GO:0110011 {is_inferred="true"} ! regulation of basement membrane organization is_a: GO:1901201 {is_inferred="true"} ! regulation of extracellular matrix assembly [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40517) +++ go_inferences.obo (working copy) @@ -11853,24 +11853,12 @@ is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process [Term] -id: GO:0010532 ! regulation of activation of JAK1 kinase activity -is_a: GO:0010533 {is_inferred="true"} ! regulation of activation of Janus kinase activity - -[Term] id: GO:0010533 ! regulation of activation of Janus kinase activity is_a: GO:0045859 {is_inferred="true"} ! regulation of protein kinase activity +is_a: GO:0046425 {is_inferred="true"} ! regulation of JAK-STAT cascade is_a: GO:0050730 {is_inferred="true"} ! regulation of peptidyl-tyrosine phosphorylation [Term] -id: GO:0010534 ! regulation of activation of JAK2 kinase activity -is_a: GO:0010533 {is_inferred="true"} ! regulation of activation of Janus kinase activity - -[Term] -id: GO:0010535 ! positive regulation of activation of JAK2 kinase activity -is_a: GO:0010534 {is_inferred="true"} ! regulation of activation of JAK2 kinase activity -is_a: GO:0010536 {is_inferred="true"} ! positive regulation of activation of Janus kinase activity - -[Term] id: GO:0010536 ! positive regulation of activation of Janus kinase activity is_a: GO:0010533 {is_inferred="true"} ! regulation of activation of Janus kinase activity is_a: GO:0045860 {is_inferred="true"} ! positive regulation of protein kinase activity @@ -11878,11 +11866,6 @@ is_a: GO:0050731 {is_inferred="true"} ! positive regulation of peptidyl-tyrosine phosphorylation [Term] -id: GO:0010537 ! positive regulation of activation of JAK1 kinase activity -is_a: GO:0010532 {is_inferred="true"} ! regulation of activation of JAK1 kinase activity -is_a: GO:0010536 {is_inferred="true"} ! positive regulation of activation of Janus kinase activity - -[Term] id: GO:0010542 ! nitrate efflux transmembrane transporter activity is_a: GO:0015112 {is_inferred="true"} ! nitrate transmembrane transporter activity is_a: GO:0015562 {is_inferred="true"} ! efflux transmembrane transporter activity @@ -31747,111 +31730,15 @@ is_a: GO:0050730 {is_inferred="true"} ! regulation of peptidyl-tyrosine phosphorylation [Term] -id: GO:0042510 ! regulation of tyrosine phosphorylation of Stat1 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042511 ! positive regulation of tyrosine phosphorylation of Stat1 protein -is_a: GO:0042510 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat1 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042512 ! negative regulation of tyrosine phosphorylation of Stat1 protein -is_a: GO:0042510 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat1 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042513 ! regulation of tyrosine phosphorylation of Stat2 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042514 ! negative regulation of tyrosine phosphorylation of Stat2 protein -is_a: GO:0042513 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat2 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042515 ! positive regulation of tyrosine phosphorylation of Stat2 protein -is_a: GO:0042513 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat2 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042516 ! regulation of tyrosine phosphorylation of Stat3 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042517 ! positive regulation of tyrosine phosphorylation of Stat3 protein -is_a: GO:0042516 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat3 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042518 ! negative regulation of tyrosine phosphorylation of Stat3 protein -is_a: GO:0042516 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat3 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042519 ! regulation of tyrosine phosphorylation of Stat4 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042520 ! positive regulation of tyrosine phosphorylation of Stat4 protein -is_a: GO:0042519 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat4 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042521 ! negative regulation of tyrosine phosphorylation of Stat4 protein -is_a: GO:0042519 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat4 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042522 ! regulation of tyrosine phosphorylation of Stat5 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042523 ! positive regulation of tyrosine phosphorylation of Stat5 protein -is_a: GO:0042522 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat5 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042524 ! negative regulation of tyrosine phosphorylation of Stat5 protein -is_a: GO:0042522 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat5 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042525 ! regulation of tyrosine phosphorylation of Stat6 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042526 ! positive regulation of tyrosine phosphorylation of Stat6 protein -is_a: GO:0042525 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat6 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042527 ! negative regulation of tyrosine phosphorylation of Stat6 protein -is_a: GO:0042525 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat6 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042528 ! regulation of tyrosine phosphorylation of Stat7 protein -is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042529 ! positive regulation of tyrosine phosphorylation of Stat7 protein -is_a: GO:0042528 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat7 protein -is_a: GO:0042531 {is_inferred="true"} ! positive regulation of tyrosine phosphorylation of STAT protein - -[Term] -id: GO:0042530 ! negative regulation of tyrosine phosphorylation of Stat7 protein -is_a: GO:0042528 {is_inferred="true"} ! regulation of tyrosine phosphorylation of Stat7 protein -is_a: GO:0042532 {is_inferred="true"} ! negative regulation of tyrosine phosphorylation of STAT protein - -[Term] id: GO:0042531 ! positive regulation of tyrosine phosphorylation of STAT protein is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein +is_a: GO:0046427 {is_inferred="true"} ! positive regulation of JAK-STAT cascade is_a: GO:0050731 {is_inferred="true"} ! positive regulation of peptidyl-tyrosine phosphorylation [Term] id: GO:0042532 ! negative regulation of tyrosine phosphorylation of STAT protein is_a: GO:0042509 {is_inferred="true"} ! regulation of tyrosine phosphorylation of STAT protein +is_a: GO:0046426 {is_inferred="true"} ! negative regulation of JAK-STAT cascade is_a: GO:0050732 {is_inferred="true"} ! negative regulation of peptidyl-tyrosine phosphorylation [Term] @@ -74143,8 +74030,8 @@ is_a: GO:1902566 {is_inferred="true"} ! regulation of eosinophil activation [Term] -id: GO:1902569 ! negative regulation of activation of JAK2 kinase activity -is_a: GO:0010534 {is_inferred="true"} ! regulation of activation of JAK2 kinase activity +id: GO:1902569 ! negative regulation of activation of Janus kinase activity +is_a: GO:0010533 {is_inferred="true"} ! regulation of activation of Janus kinase activity is_a: GO:0050732 {is_inferred="true"} ! negative regulation of peptidyl-tyrosine phosphorylation [Term] @@ -77284,20 +77171,6 @@ is_a: GO:0008104 {is_inferred="true"} ! protein localization [Term] -id: GO:1903261 ! regulation of serine phosphorylation of STAT3 protein -is_a: GO:0033139 {is_inferred="true"} ! regulation of peptidyl-serine phosphorylation of STAT protein - -[Term] -id: GO:1903262 ! negative regulation of serine phosphorylation of STAT3 protein -is_a: GO:0033140 {is_inferred="true"} ! negative regulation of peptidyl-serine phosphorylation of STAT protein -is_a: GO:1903261 {is_inferred="true"} ! regulation of serine phosphorylation of STAT3 protein - -[Term] -id: GO:1903263 ! positive regulation of serine phosphorylation of STAT3 protein -is_a: GO:0033141 {is_inferred="true"} ! positive regulation of peptidyl-serine phosphorylation of STAT protein -is_a: GO:1903261 {is_inferred="true"} ! regulation of serine phosphorylation of STAT3 protein - -[Term] id: GO:1903264 ! nitrate reductase activity involved in anaerobic electron transport chain is_a: GO:0008940 {is_inferred="true"} ! nitrate reductase activity @@ -93142,11 +93015,13 @@ [Term] id: GO:2000365 ! negative regulation of STAT protein import into nucleus is_a: GO:0042308 {is_inferred="true"} ! negative regulation of protein import into nucleus +is_a: GO:0046426 {is_inferred="true"} ! negative regulation of JAK-STAT cascade is_a: GO:2000364 {is_inferred="true"} ! regulation of STAT protein import into nucleus [Term] id: GO:2000366 ! positive regulation of STAT protein import into nucleus is_a: GO:0042307 {is_inferred="true"} ! positive regulation of protein import into nucleus +is_a: GO:0046427 {is_inferred="true"} ! positive regulation of JAK-STAT cascade is_a: GO:2000364 {is_inferred="true"} ! regulation of STAT protein import into nucleus [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40491) +++ go_inferences.obo (working copy) @@ -7666,9 +7666,9 @@ is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport [Term] -id: GO:0006851 ! mitochondrial calcium ion transport -is_a: GO:0006816 {is_inferred="true"} ! calcium ion transport -is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport +id: GO:0006851 ! mitochondrial calcium ion transmembrane transport +is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0006853 ! carnitine shuttle @@ -15630,6 +15630,7 @@ [Term] id: GO:0015860 ! purine nucleoside transmembrane transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:1901642 {is_inferred="true"} ! nucleoside transmembrane transport [Term] @@ -30373,11 +30374,9 @@ [Term] id: GO:0036444 ! mitochondrial calcium uptake -is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transport +is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transmembrane transport is_a: GO:0060401 {is_inferred="true"} ! cytosolic calcium ion transport is_a: GO:0070509 {is_inferred="true"} ! calcium ion import -is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0036502 ! Derlin-1-VIMP complex @@ -60156,10 +60155,9 @@ [Term] id: GO:0099093 ! mitochondrial calcium release -is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transport +is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transmembrane transport is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol is_a: GO:1901660 {is_inferred="true"} ! calcium ion export -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0099094 ! ligand-gated cation channel activity @@ -61193,6 +61191,14 @@ is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane [Term] +id: GO:0140021 ! mitochondrial ADP transmembrane transport +is_a: GO:0015866 {is_inferred="true"} ! ADP transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -73203,6 +73209,8 @@ [Term] id: GO:1902361 ! mitochondrial pyruvate transmembrane transport +is_a: GO:0006850 {is_inferred="true"} ! mitochondrial pyruvate transport +is_a: GO:1901475 {is_inferred="true"} ! pyruvate transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -90874,6 +90882,7 @@ [Term] id: GO:1990540 ! mitochondrial manganese ion transmembrane transport +is_a: GO:0071421 {is_inferred="true"} ! manganese ion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -90882,11 +90891,17 @@ is_a: GO:1990546 {is_inferred="true"} ! mitochondrial tricarboxylic acid transmembrane transport [Term] +id: GO:1990542 ! mitochondrial transmembrane transport +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:1990543 ! mitochondrial S-adenosyl-L-methionine transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990544 ! mitochondrial ATP transmembrane transport +is_a: GO:0015867 {is_inferred="true"} ! ATP transport is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport @@ -90894,6 +90909,7 @@ [Term] id: GO:1990545 ! mitochondrial thiamine pyrophosphate transmembrane transport +is_a: GO:0030974 {is_inferred="true"} ! thiamine pyrophosphate transport is_a: GO:0072531 {is_inferred="true"} ! pyrimidine-containing compound transmembrane transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport @@ -90906,14 +90922,17 @@ [Term] id: GO:1990547 ! mitochondrial phosphate ion transmembrane transport +is_a: GO:0035435 {is_inferred="true"} ! phosphate ion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990548 ! mitochondrial FAD transmembrane transport +is_a: GO:0035350 {is_inferred="true"} ! FAD transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990549 ! mitochondrial NAD transmembrane transport +is_a: GO:0035352 {is_inferred="true"} ! NAD transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -90924,15 +90943,18 @@ [Term] id: GO:1990551 ! mitochondrial 2-oxoadipate transmembrane transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990553 ! mitochondrial 5'-adenylyl sulfate transmembrane transport +is_a: GO:1902558 {is_inferred="true"} ! 5'-adenylyl sulfate transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990554 ! mitochondrial 3'-phospho-5'-adenylyl sulfate transmembrane transport +is_a: GO:1902559 {is_inferred="true"} ! 3'-phospho-5'-adenylyl sulfate transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -90980,6 +91002,8 @@ [Term] id: GO:1990575 ! mitochondrial L-ornithine transmembrane transport +is_a: GO:0000066 {is_inferred="true"} ! mitochondrial ornithine transport +is_a: GO:1903352 {is_inferred="true"} ! L-ornithine transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91029,8 +91053,14 @@ [Term] id: GO:1990614 ! mitochondrial magnesium ion transmembrane transport is_a: GO:0045016 {is_inferred="true"} ! mitochondrial magnesium ion transport +is_a: GO:1903830 {is_inferred="true"} ! magnesium ion transmembrane transport +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] +id: GO:1990616 ! magnesium ion export from mitochondrion +is_a: GO:1990614 {is_inferred="true"} ! mitochondrial magnesium ion transmembrane transport + +[Term] id: GO:1990621 ! ESCRT IV complex is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40343) +++ go_inferences.obo (working copy) @@ -572,6 +572,10 @@ is_a: GO:0007049 {is_inferred="true"} ! cell cycle [Term] +id: GO:0000280 ! nuclear division +is_a: GO:0048285 {is_inferred="true"} ! organelle fission + +[Term] id: GO:0000281 ! mitotic cytokinesis is_a: GO:0061640 {is_inferred="true"} ! cytoskeleton-dependent cytokinesis is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -10860,6 +10864,10 @@ is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis [Term] +id: GO:0010020 ! chloroplast fission +is_a: GO:0043572 {is_inferred="true"} ! plastid fission + +[Term] id: GO:0010021 ! amylopectin biosynthetic process is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process @@ -16672,6 +16680,10 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] +id: GO:0016559 ! peroxisome fission +is_a: GO:0048285 {is_inferred="true"} ! organelle fission + +[Term] id: GO:0016562 ! protein import into peroxisome matrix, receptor recycling is_a: GO:0001881 {is_inferred="true"} ! receptor recycling @@ -34014,6 +34026,14 @@ is_a: GO:0043567 {is_inferred="true"} ! regulation of insulin-like growth factor receptor signaling pathway [Term] +id: GO:0043572 ! plastid fission +is_a: GO:0048285 {is_inferred="true"} ! organelle fission + +[Term] +id: GO:0043573 ! leucoplast fission +is_a: GO:0043572 {is_inferred="true"} ! plastid fission + +[Term] id: GO:0043574 ! peroxisomal transport is_a: GO:0006810 {is_inferred="true"} ! transport @@ -58210,6 +58230,10 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] +id: GO:0097352 ! autophagosome maturation +is_a: GO:0097576 {is_inferred="true"} ! vacuole fusion + +[Term] id: GO:0097355 ! protein localization to heterochromatin is_a: GO:0071168 {is_inferred="true"} ! protein localization to chromatin @@ -58311,6 +58335,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0097576 ! vacuole fusion +is_a: GO:0048284 {is_inferred="true"} ! organelle fusion + +[Term] id: GO:0097578 ! sequestering of copper ion is_a: GO:1902578 {is_inferred="true"} ! single-organism localization @@ -61150,7 +61178,13 @@ is_a: GO:0015556 {is_inferred="true"} ! C4-dicarboxylate transmembrane transporter activity [Term] +id: GO:0140013 ! meiotic nuclear division +is_a: GO:0000280 {is_inferred="true"} ! nuclear division +is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process + +[Term] id: GO:0140014 ! mitotic nuclear division +is_a: GO:0000280 {is_inferred="true"} ! nuclear division is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40271) +++ go_inferences.obo (working copy) @@ -49306,6 +49306,11 @@ is_a: GO:1905960 {is_inferred="true"} ! response to differentiation-inducing factor 2 [Term] +id: GO:0061866 ! negative regulation of histone H3-S10 phosphorylation +is_a: GO:0033128 {is_inferred="true"} ! negative regulation of histone phosphorylation +is_a: GO:0033137 {is_inferred="true"} ! negative regulation of peptidyl-serine phosphorylation + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40270) +++ go_inferences.obo (working copy) @@ -59308,6 +59308,10 @@ is_a: GO:0098859 {is_inferred="true"} ! actin filament bundle of actin-based cell projection [Term] +id: GO:0098863 ! nuclear migration by microtubule mediated pushing forces +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization + +[Term] id: GO:0098866 ! multivesicular body fusion to apical plasma membrane is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40269) +++ go_inferences.obo (working copy) @@ -49301,6 +49301,11 @@ is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport [Term] +id: GO:0061862 ! cellular response to differentiation-inducing factor 2 +is_a: GO:0051716 {is_inferred="true"} ! cellular response to stimulus +is_a: GO:1905960 {is_inferred="true"} ! response to differentiation-inducing factor 2 + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -76160,17 +76165,17 @@ is_a: GO:0043241 {is_inferred="true"} ! protein complex disassembly [Term] -id: GO:1903013 ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one +id: GO:1903013 ! response to differentiation-inducing factor 1 is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0045472 {is_inferred="true"} ! response to ether is_a: GO:1901654 {is_inferred="true"} ! response to ketone [Term] -id: GO:1903014 ! cellular response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one +id: GO:1903014 ! cellular response to differentiation-inducing factor 1 is_a: GO:0071362 {is_inferred="true"} ! cellular response to ether is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1901655 {is_inferred="true"} ! cellular response to ketone -is_a: GO:1903013 {is_inferred="true"} ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one +is_a: GO:1903013 {is_inferred="true"} ! response to differentiation-inducing factor 1 [Term] id: GO:1903015 ! regulation of exo-alpha-sialidase activity @@ -90243,7 +90248,7 @@ is_a: GO:1905957 {is_inferred="true"} ! regulation of cellular response to alcohol [Term] -id: GO:1905960 ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one +id: GO:1905960 ! response to differentiation-inducing factor 2 is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0045472 {is_inferred="true"} ! response to ether is_a: GO:1901654 {is_inferred="true"} ! response to ketone ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40268) +++ go_inferences.obo (working copy) @@ -254,11 +254,22 @@ is_a: GO:1904029 {is_inferred="true"} ! regulation of cyclin-dependent protein kinase activity [Term] +id: GO:0000082 ! G1/S transition of mitotic cell cycle +is_a: GO:0044772 {is_inferred="true"} ! mitotic cell cycle phase transition +is_a: GO:0044843 {is_inferred="true"} ! cell cycle G1/S phase transition + +[Term] id: GO:0000083 ! regulation of transcription involved in G1/S transition of mitotic cell cycle is_a: GO:0006355 {is_inferred="true"} ! regulation of transcription, DNA-templated is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] +id: GO:0000086 ! G2/M transition of mitotic cell cycle +is_a: GO:0044772 {is_inferred="true"} ! mitotic cell cycle phase transition +is_a: GO:0044839 {is_inferred="true"} ! cell cycle G2/M phase transition +is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division + +[Term] id: GO:0000087 ! mitotic M phase is_a: GO:0098763 {is_inferred="true"} ! mitotic cell cycle phase @@ -562,6 +573,7 @@ [Term] id: GO:0000281 ! mitotic cytokinesis +is_a: GO:0061640 {is_inferred="true"} ! cytoskeleton-dependent cytokinesis is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] @@ -7929,6 +7941,10 @@ is_a: GO:0007056 {is_inferred="true"} ! spindle assembly involved in female meiosis [Term] +id: GO:0007060 ! male meiosis chromosome segregation +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism + +[Term] id: GO:0007063 ! regulation of sister chromatid cohesion is_a: GO:0033045 {is_inferred="true"} ! regulation of sister chromatid segregation @@ -7992,6 +8008,10 @@ is_a: GO:0051783 {is_inferred="true"} ! regulation of nuclear division [Term] +id: GO:0007091 ! metaphase/anaphase transition of mitotic cell cycle +is_a: GO:0044784 {is_inferred="true"} ! metaphase/anaphase transition of cell cycle + +[Term] id: GO:0007093 ! mitotic cell cycle checkpoint is_a: GO:0000075 {is_inferred="true"} ! cell cycle checkpoint is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -8006,6 +8026,10 @@ is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division [Term] +id: GO:0007098 ! centrosome cycle +is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization + +[Term] id: GO:0007100 ! mitotic centrosome separation is_a: GO:0051299 {is_inferred="true"} ! centrosome separation is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -8053,6 +8077,22 @@ is_a: GO:0098765 {is_inferred="true"} ! meiosis II cell cycle phase [Term] +id: GO:0007141 ! male meiosis I +is_a: GO:0007127 {is_inferred="true"} ! meiosis I + +[Term] +id: GO:0007142 ! male meiosis II +is_a: GO:0007135 {is_inferred="true"} ! meiosis II + +[Term] +id: GO:0007144 ! female meiosis I +is_a: GO:0007127 {is_inferred="true"} ! meiosis I + +[Term] +id: GO:0007147 ! female meiosis II +is_a: GO:0007135 {is_inferred="true"} ! meiosis II + +[Term] id: GO:0007175 ! negative regulation of epidermal growth factor-activated receptor activity is_a: GO:0007176 {is_inferred="true"} ! regulation of epidermal growth factor-activated receptor activity is_a: GO:0061099 {is_inferred="true"} ! negative regulation of protein tyrosine kinase activity @@ -8592,7 +8632,6 @@ [Term] id: GO:0008328 ! ionotropic glutamate receptor complex is_a: GO:0034702 {is_inferred="true"} ! ion channel complex -is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex is_a: GO:0098878 {is_inferred="true"} ! neurotransmitter receptor complex [Term] @@ -11544,6 +11583,7 @@ [Term] id: GO:0010389 ! regulation of G2/M transition of mitotic cell cycle +is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division is_a: GO:1901990 {is_inferred="true"} ! regulation of mitotic cell cycle phase transition is_a: GO:1902749 {is_inferred="true"} ! regulation of cell cycle G2/M phase transition @@ -13289,6 +13329,7 @@ [Term] id: GO:0010971 ! positive regulation of G2/M transition of mitotic cell cycle is_a: GO:0010389 {is_inferred="true"} ! regulation of G2/M transition of mitotic cell cycle +is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:1901992 {is_inferred="true"} ! positive regulation of mitotic cell cycle phase transition is_a: GO:1902751 {is_inferred="true"} ! positive regulation of cell cycle G2/M phase transition @@ -16510,6 +16551,7 @@ [Term] id: GO:0016321 ! female meiosis chromosome segregation +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0045132 {is_inferred="true"} ! meiotic chromosome segregation [Term] @@ -16541,10 +16583,12 @@ [Term] id: GO:0016345 ! female meiotic chromosome movement towards spindle pole is_a: GO:0016344 {is_inferred="true"} ! meiotic chromosome movement towards spindle pole +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] id: GO:0016346 ! male meiotic chromosome movement towards spindle pole is_a: GO:0016344 {is_inferred="true"} ! meiotic chromosome movement towards spindle pole +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] id: GO:0016360 ! sensory organ precursor cell fate determination @@ -20285,8 +20329,8 @@ [Term] id: GO:0030474 ! spindle pole body duplication -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly is_a: GO:0051300 {is_inferred="true"} ! spindle pole body organization +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:0030476 ! ascospore wall assembly @@ -21141,7 +21185,7 @@ [Term] id: GO:0030997 ! regulation of centriole-centriole cohesion -is_a: GO:0070507 {is_inferred="true"} ! regulation of microtubule cytoskeleton organization +is_a: GO:0046605 {is_inferred="true"} ! regulation of centrosome cycle [Term] id: GO:0030999 ! linear element assembly @@ -21182,14 +21226,17 @@ is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] +id: GO:0031023 ! microtubule organizing center organization +is_a: GO:0006996 {is_inferred="true"} ! organelle organization + +[Term] id: GO:0031024 ! interphase microtubule organizing center assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:0031025 ! equatorial microtubule organizing center disassembly -is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization +is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] id: GO:0031026 ! glutamate synthase complex @@ -25878,6 +25925,7 @@ [Term] id: GO:0033206 ! meiotic cytokinesis +is_a: GO:0061640 {is_inferred="true"} ! cytoskeleton-dependent cytokinesis is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -29909,6 +29957,10 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] +id: GO:0036064 ! ciliary basal body +is_a: GO:0005815 {is_inferred="true"} ! microtubule organizing center + +[Term] id: GO:0036079 ! purine nucleotide-sugar transport is_a: GO:0015780 {is_inferred="true"} ! nucleotide-sugar transport @@ -40136,11 +40188,13 @@ id: GO:0046603 ! negative regulation of mitotic centrosome separation is_a: GO:0045839 {is_inferred="true"} ! negative regulation of mitotic nuclear division is_a: GO:0046602 {is_inferred="true"} ! regulation of mitotic centrosome separation +is_a: GO:0046606 {is_inferred="true"} ! negative regulation of centrosome cycle [Term] id: GO:0046604 ! positive regulation of mitotic centrosome separation is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:0046602 {is_inferred="true"} ! regulation of mitotic centrosome separation +is_a: GO:0046607 {is_inferred="true"} ! positive regulation of centrosome cycle [Term] id: GO:0046605 ! regulation of centrosome cycle @@ -43672,18 +43726,6 @@ is_a: GO:0051295 {is_inferred="true"} ! establishment of meiotic spindle localization [Term] -id: GO:0051297 ! centrosome organization -is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization - -[Term] -id: GO:0051298 ! centrosome duplication -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process - -[Term] -id: GO:0051299 ! centrosome separation -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process - -[Term] id: GO:0051300 ! spindle pole body organization is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization @@ -44593,7 +44635,6 @@ [Term] id: GO:0051642 ! centrosome localization -is_a: GO:0051640 {is_inferred="true"} ! organelle localization is_a: GO:0061842 {is_inferred="true"} ! microtubule organizing center localization [Term] @@ -48915,10 +48956,6 @@ is_a: GO:1902440 {is_inferred="true"} ! protein localization to mitotic spindle pole body [Term] -id: GO:0061511 ! centriole elongation -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process - -[Term] id: GO:0061519 ! macrophage homeostasis is_a: GO:0001776 {is_inferred="true"} ! leukocyte homeostasis @@ -49218,7 +49255,7 @@ [Term] id: GO:0061842 ! microtubule organizing center localization -is_a: GO:0051179 {is_inferred="true"} ! localization +is_a: GO:0051640 {is_inferred="true"} ! organelle localization [Term] id: GO:0061845 ! neuron projection branch point @@ -50508,6 +50545,7 @@ [Term] id: GO:0070632 ! establishment of spindle pole body localization +is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization is_a: GO:0070631 {is_inferred="true"} ! spindle pole body localization [Term] @@ -57833,8 +57871,8 @@ [Term] id: GO:0097107 ! postsynaptic density assembly -is_a: GO:0070925 {is_inferred="true"} ! organelle assembly is_a: GO:0097106 {is_inferred="true"} ! postsynaptic density organization +is_a: GO:0098698 {is_inferred="true"} ! postsynaptic specialization assembly [Term] id: GO:0097120 ! receptor localization to synapse @@ -58812,6 +58850,37 @@ is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] +id: GO:0098693 ! regulation of synaptic vesicle cycle +is_a: GO:0051049 {is_inferred="true"} ! regulation of transport +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization + +[Term] +id: GO:0098694 ! regulation of synaptic vesicle budding from presynaptic endocytic zone membrane +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization +is_a: GO:1900242 {is_inferred="true"} ! regulation of synaptic vesicle endocytosis + +[Term] +id: GO:0098695 ! inositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels +is_a: GO:0005220 {is_inferred="true"} ! inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity + +[Term] +id: GO:0098696 ! regulation of neurotransmitter receptor localization to postsynaptic specialization membrane +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality +is_a: GO:1902473 {is_inferred="true"} ! regulation of protein localization to synapse +is_a: GO:1902683 {is_inferred="true"} ! regulation of receptor localization to synapse +is_a: GO:1904375 {is_inferred="true"} ! regulation of protein localization to cell periphery +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane + +[Term] +id: GO:0098697 ! ryanodine-sensitive calcium-release channel activity involved in regulation of postsynaptic cytosolic calcium levels +is_a: GO:0005219 {is_inferred="true"} ! ryanodine-sensitive calcium-release channel activity + +[Term] +id: GO:0098698 ! postsynaptic specialization assembly +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly +is_a: GO:0099084 {is_inferred="true"} ! postsynaptic specialization organization + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -59265,7 +59334,7 @@ [Term] id: GO:0098878 ! neurotransmitter receptor complex -is_a: GO:0043235 {is_inferred="true"} ! receptor complex +is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] id: GO:0098879 ! structural constituent of postsynaptic specialization @@ -59276,6 +59345,11 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] +id: GO:0098881 ! exocytic insertion of neurotransmitter receptor to plasma membrane +is_a: GO:0051668 {is_inferred="true"} ! localization within membrane +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0098882 ! structural constituent of presynaptic active zone is_a: GO:0098918 {is_inferred="true"} ! structural constituent of synapse @@ -59523,9 +59597,8 @@ [Term] id: GO:0098943 ! neurotransmitter receptor transport, postsynaptic endosome to lysosome -is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0008333 {is_inferred="true"} ! endosome to lysosome transport is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport -is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0061462 {is_inferred="true"} ! protein localization to lysosome is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport @@ -59649,11 +59722,13 @@ is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle +is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport is_a: GO:1902946 {is_inferred="true"} ! protein localization to early endosome [Term] id: GO:0098969 ! neurotransmitter receptor transport to postsynaptic membrane +is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0098877 {is_inferred="true"} ! neurotransmitter receptor transport to plasma membrane is_a: GO:1903540 {is_inferred="true"} ! establishment of protein localization to postsynaptic membrane @@ -59664,6 +59739,7 @@ [Term] id: GO:0098971 ! anterograde dendritic transport of neurotransmitter receptor complex +is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0098937 {is_inferred="true"} ! anterograde dendritic transport [Term] @@ -60422,6 +60498,12 @@ is_a: GO:0099566 {is_inferred="true"} ! regulation of postsynaptic cytosolic calcium ion concentration [Term] +id: GO:0099590 ! neurotransmitter receptor internalization +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:0051668 {is_inferred="true"} ! localization within membrane +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization + +[Term] id: GO:0099592 ! endocytosed synaptic vesicle processing via endosome is_a: GO:0046907 {is_inferred="true"} ! intracellular transport @@ -60482,10 +60564,6 @@ is_a: GO:0098953 {is_inferred="true"} ! receptor diffusion trapping [Term] -id: GO:0099630 ! postsynaptic neurotransmitter receptor cycle -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0099631 ! postsynaptic endocytic zone cytoplasmic component is_a: GO:0044456 {is_inferred="true"} ! synapse part @@ -60508,6 +60586,10 @@ is_a: GO:0099626 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels [Term] +id: GO:0099637 ! neurotransmitter receptor transport +is_a: GO:0099632 {is_inferred="true"} ! protein transport within plasma membrane + +[Term] id: GO:0099638 ! endosome to plasma membrane protein transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport @@ -60542,6 +60624,7 @@ [Term] id: GO:0099645 ! neurotransmitter receptor localization to postsynaptic specialization membrane +is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0099633 {is_inferred="true"} ! protein localization to postsynaptic specialization membrane [Term] @@ -69005,8 +69088,7 @@ is_a: GO:0032847 {is_inferred="true"} ! regulation of cellular pH reduction is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization +is_a: GO:0098693 {is_inferred="true"} ! regulation of synaptic vesicle cycle [Term] id: GO:1901547 ! negative regulation of synaptic vesicle lumen acidification @@ -76574,12 +76656,12 @@ [Term] id: GO:1903126 ! negative regulation of centriole-centriole cohesion is_a: GO:0030997 {is_inferred="true"} ! regulation of centriole-centriole cohesion -is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization +is_a: GO:0046606 {is_inferred="true"} ! negative regulation of centrosome cycle [Term] id: GO:1903127 ! positive regulation of centriole-centriole cohesion is_a: GO:0030997 {is_inferred="true"} ! regulation of centriole-centriole cohesion -is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:0046607 {is_inferred="true"} ! positive regulation of centrosome cycle [Term] id: GO:1903131 ! mononuclear cell differentiation @@ -77929,6 +78011,7 @@ [Term] id: GO:1903421 ! regulation of synaptic vesicle recycling +is_a: GO:0098693 {is_inferred="true"} ! regulation of synaptic vesicle cycle is_a: GO:1902803 {is_inferred="true"} ! regulation of synaptic vesicle transport [Term] @@ -81533,8 +81616,8 @@ [Term] id: GO:1904185 ! equatorial microtubule organizing center assembly -is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] id: GO:1904186 ! post-anaphase microtubule array organization @@ -92634,6 +92717,7 @@ id: GO:2000300 ! regulation of synaptic vesicle exocytosis is_a: GO:0017158 {is_inferred="true"} ! regulation of calcium ion-dependent exocytosis is_a: GO:0046928 {is_inferred="true"} ! regulation of neurotransmitter secretion +is_a: GO:0098693 {is_inferred="true"} ! regulation of synaptic vesicle cycle is_a: GO:1902803 {is_inferred="true"} ! regulation of synaptic vesicle transport [Term] @@ -95118,8 +95202,7 @@ [Term] id: GO:2000807 ! regulation of synaptic vesicle clustering -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization +is_a: GO:0098693 {is_inferred="true"} ! regulation of synaptic vesicle cycle [Term] id: GO:2000808 ! negative regulation of synaptic vesicle clustering ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40241) +++ go_inferences.obo (working copy) @@ -759,6 +759,12 @@ is_a: GO:1905369 {is_inferred="true"} ! endopeptidase complex [Term] +id: GO:0000506 ! glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part +is_a: GO:1990234 {is_inferred="true"} ! transferase complex + +[Term] id: GO:0000706 ! meiotic DNA double-strand break processing is_a: GO:0000729 {is_inferred="true"} ! DNA double-strand break processing is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40228) +++ go_inferences.obo (working copy) @@ -8570,6 +8570,11 @@ is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] +id: GO:0008315 ! G2/MI transition of meiotic cell cycle +is_a: GO:0044771 {is_inferred="true"} ! meiotic cell cycle phase transition +is_a: GO:0044839 {is_inferred="true"} ! cell cycle G2/M phase transition + +[Term] id: GO:0008320 ! protein transmembrane transporter activity is_a: GO:0008565 {is_inferred="true"} ! protein transporter activity is_a: GO:1904680 {is_inferred="true"} ! peptide transmembrane transporter activity ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40206) +++ go_inferences.obo (working copy) @@ -60920,6 +60920,24 @@ is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex [Term] +id: GO:0110002 ! regulation of tRNA methylation +is_a: GO:2000235 {is_inferred="true"} ! regulation of tRNA processing + +[Term] +id: GO:0110003 ! regulation of tRNA C5-cytosine methylation +is_a: GO:0110002 {is_inferred="true"} ! regulation of tRNA methylation + +[Term] +id: GO:0110004 ! positive regulation of tRNA methylation +is_a: GO:0110002 {is_inferred="true"} ! regulation of tRNA methylation +is_a: GO:2000237 {is_inferred="true"} ! positive regulation of tRNA processing + +[Term] +id: GO:0110005 ! positive regulation of tRNA C5-cytosine methylation +is_a: GO:0110003 {is_inferred="true"} ! regulation of tRNA C5-cytosine methylation +is_a: GO:0110004 {is_inferred="true"} ! positive regulation of tRNA methylation + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -69305,11 +69323,6 @@ is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity [Term] -id: GO:1901619 ! tRNA methylation in response to nitrogen starvation -is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound -is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound - -[Term] id: GO:1901620 ! regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning is_a: GO:0008589 {is_inferred="true"} ! regulation of smoothened signaling pathway is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development @@ -69408,20 +69421,6 @@ is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] -id: GO:1901643 ! regulation of tRNA methylation in response to nitrogen starvation -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress -is_a: GO:2000235 {is_inferred="true"} ! regulation of tRNA processing - -[Term] -id: GO:1901644 ! positive regulation of tRNA methylation in response to nitrogen starvation -is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication -is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels -is_a: GO:1901643 {is_inferred="true"} ! regulation of tRNA methylation in response to nitrogen starvation -is_a: GO:2000237 {is_inferred="true"} ! positive regulation of tRNA processing - -[Term] id: GO:1901645 ! regulation of synoviocyte proliferation is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40203) +++ go_inferences.obo (working copy) @@ -60293,18 +60293,18 @@ is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission [Term] -id: GO:0099550 ! trans-synaptic signalling, modulating synaptic transmission +id: GO:0099550 ! trans-synaptic signaling, modulating synaptic transmission is_a: GO:0050804 {is_inferred="true"} ! modulation of synaptic transmission [Term] id: GO:0099551 ! trans-synaptic signaling by neuropeptide, modulating synaptic transmission is_a: GO:0099540 {is_inferred="true"} ! trans-synaptic signaling by neuropeptide -is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission +is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signaling, modulating synaptic transmission [Term] id: GO:0099552 ! trans-synaptic signaling by lipid, modulating synaptic transmission is_a: GO:0099541 {is_inferred="true"} ! trans-synaptic signaling by lipid -is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission +is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signaling, modulating synaptic transmission [Term] id: GO:0099553 ! trans-synaptic signaling by endocannabinoid, modulating synaptic transmission @@ -60313,7 +60313,7 @@ [Term] id: GO:0099554 ! trans-synaptic signaling by soluble gas, modulating synaptic transmission -is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission +is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signaling, modulating synaptic transmission [Term] id: GO:0099555 ! trans-synaptic signaling by nitric oxide, modulating synaptic transmission @@ -60326,7 +60326,7 @@ [Term] id: GO:0099557 ! trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission is_a: GO:0099545 {is_inferred="true"} ! trans-synaptic signaling by trans-synaptic complex -is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission +is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signaling, modulating synaptic transmission [Term] id: GO:0099564 ! modification of synaptic structure, modulating synaptic transmission ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40094) +++ go_inferences.obo (working copy) @@ -398,8 +398,7 @@ [Term] id: GO:0000169 ! activation of MAPK activity involved in osmosensory signaling pathway -is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:0120027 {is_inferred="true"} ! regulation of osmosensory signaling pathway [Term] id: GO:0000172 ! ribonuclease MRP complex @@ -407,8 +406,7 @@ [Term] id: GO:0000173 ! inactivation of MAPK activity involved in osmosensory signaling pathway -is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:0120028 {is_inferred="true"} ! negative regulation of osmosensory signaling pathway [Term] id: GO:0000176 ! nuclear exosome (RNase complex) @@ -61001,6 +60999,21 @@ is_a: GO:0042995 {is_inferred="true"} ! cell projection [Term] +id: GO:0120027 ! regulation of osmosensory signaling pathway +is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction +is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress + +[Term] +id: GO:0120028 ! negative regulation of osmosensory signaling pathway +is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction +is_a: GO:0120027 {is_inferred="true"} ! regulation of osmosensory signaling pathway + +[Term] +id: GO:0120029 ! hydrogen ion export across plasma membrane +is_a: GO:1902600 {is_inferred="true"} ! hydrogen ion transmembrane transport + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40092) +++ go_inferences.obo (working copy) @@ -90998,8 +90998,8 @@ [Term] id: GO:1990771 ! clathrin-dependent extracellular exosome endocytosis -is_a: GO:0006858 {is_inferred="true"} ! extracellular transport is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization +is_a: GO:0072583 {is_inferred="true"} ! clathrin-dependent endocytosis [Term] id: GO:1990779 ! glycoprotein Ib-IX-V complex ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40064) +++ go_inferences.obo (working copy) @@ -30257,11 +30257,6 @@ is_a: GO:1901367 {is_inferred="true"} ! response to L-cysteine [Term] -id: GO:0036347 ! glutathione import into cell -is_a: GO:0034635 {is_inferred="true"} ! glutathione transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:0036375 ! Kibra-Ex-Mer complex is_a: GO:0044464 {is_inferred="true"} ! cell part @@ -34895,18 +34890,6 @@ is_a: GO:0000175 {is_inferred="true"} ! 3'-5'-exoribonuclease activity [Term] -id: GO:0044755 ! pantothenate import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] -id: GO:0044756 ! biotin import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] -id: GO:0044757 ! dethiobiotin import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:0044764 ! multi-organism cellular process is_a: GO:0009987 {is_inferred="true"} ! cellular process is_a: GO:0051704 {is_inferred="true"} ! multi-organism process @@ -48891,15 +48874,6 @@ is_a: GO:0006270 {is_inferred="true"} ! DNA replication initiation [Term] -id: GO:0061488 ! adenine import into cell -is_a: GO:0015853 {is_inferred="true"} ! adenine transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] -id: GO:0061489 ! guanine import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:0061494 ! gamma-tubulin large complex, mitotic spindle pole body is_a: GO:0055032 {is_inferred="true"} ! gamma-tubulin large complex, spindle pole body @@ -58114,10 +58088,6 @@ is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound [Term] -id: GO:0097319 ! carbohydrate import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:0097327 ! response to antineoplastic agent is_a: GO:0042493 {is_inferred="true"} ! response to drug @@ -58208,21 +58178,6 @@ is_a: GO:1901545 {is_inferred="true"} ! response to raffinose [Term] -id: GO:0097404 ! succinate import into cell -is_a: GO:0015744 {is_inferred="true"} ! succinate transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] -id: GO:0097405 ! malate import into cell -is_a: GO:0015743 {is_inferred="true"} ! malate transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] -id: GO:0097406 ! malonic acid import into cell -is_a: GO:0098657 {is_inferred="true"} ! import into cell -is_a: GO:1900752 {is_inferred="true"} ! malonic acid transport - -[Term] id: GO:0097410 ! hippocampal interneuron differentiation is_a: GO:0021879 {is_inferred="true"} ! forebrain neuron differentiation is_a: GO:0021895 {is_inferred="true"} ! cerebral cortex neuron differentiation @@ -58253,10 +58208,6 @@ is_a: GO:0097386 {is_inferred="true"} ! glial cell projection [Term] -id: GO:0097459 ! iron ion import into cell -is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell - -[Term] id: GO:0097466 ! ubiquitin-dependent glycoprotein ERAD pathway is_a: GO:1904587 {is_inferred="true"} ! response to glycoprotein @@ -58775,13 +58726,14 @@ is_a: GO:0006810 {is_inferred="true"} ! transport [Term] -id: GO:0098658 ! inorganic anion import into cell -is_a: GO:0099587 {is_inferred="true"} ! inorganic ion import into cell +id: GO:0098658 ! inorganic anion import across plasma membrane +is_a: GO:0098661 {is_inferred="true"} ! inorganic anion transmembrane transport +is_a: GO:0099587 {is_inferred="true"} ! inorganic ion import across plasma membrane [Term] -id: GO:0098659 ! inorganic cation import into cell -is_a: GO:0006812 {is_inferred="true"} ! cation transport -is_a: GO:0099587 {is_inferred="true"} ! inorganic ion import into cell +id: GO:0098659 ! inorganic cation import across plasma membrane +is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport +is_a: GO:0099587 {is_inferred="true"} ! inorganic ion import across plasma membrane [Term] id: GO:0098660 ! inorganic ion transmembrane transport @@ -58862,7 +58814,7 @@ [Term] id: GO:0098702 ! adenine import across plasma membrane -is_a: GO:0061488 {is_inferred="true"} ! adenine import into cell +is_a: GO:0015853 {is_inferred="true"} ! adenine transport is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1904823 {is_inferred="true"} ! purine nucleobase transmembrane transport @@ -58869,46 +58821,41 @@ [Term] id: GO:0098703 ! calcium ion import across plasma membrane is_a: GO:0097553 {is_inferred="true"} ! calcium ion transmembrane import into cytosol -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane -is_a: GO:1990035 {is_inferred="true"} ! calcium ion import into cell +is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane [Term] id: GO:0098704 ! carbohydrate import across plasma membrane is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport -is_a: GO:0097319 {is_inferred="true"} ! carbohydrate import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] id: GO:0098705 ! copper ion import across plasma membrane +is_a: GO:0015677 {is_inferred="true"} ! copper ion import is_a: GO:0015679 {is_inferred="true"} ! plasma membrane copper ion transport -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane -is_a: GO:1902861 {is_inferred="true"} ! copper ion import into cell +is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane [Term] id: GO:0098706 ! ferric iron import across plasma membrane +is_a: GO:0033216 {is_inferred="true"} ! ferric iron import is_a: GO:0098711 {is_inferred="true"} ! iron ion import across plasma membrane [Term] id: GO:0098707 ! ferrous iron import across plasma membrane -is_a: GO:0097460 {is_inferred="true"} ! ferrous iron import into cell +is_a: GO:0070627 {is_inferred="true"} ! ferrous iron import is_a: GO:0098711 {is_inferred="true"} ! iron ion import across plasma membrane is_a: GO:1903874 {is_inferred="true"} ! ferrous iron transmembrane transport [Term] id: GO:0098708 ! glucose import across plasma membrane -is_a: GO:0061490 {is_inferred="true"} ! glucose import into cell -is_a: GO:0098704 {is_inferred="true"} ! carbohydrate import across plasma membrane is_a: GO:1904659 {is_inferred="true"} ! glucose transmembrane transport [Term] id: GO:0098709 ! glutathione import across plasma membrane is_a: GO:0034775 {is_inferred="true"} ! glutathione transmembrane transport -is_a: GO:0036347 {is_inferred="true"} ! glutathione import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] id: GO:0098710 ! guanine import across plasma membrane -is_a: GO:0061489 {is_inferred="true"} ! guanine import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1903716 {is_inferred="true"} ! guanine transmembrane transport @@ -58915,8 +58862,8 @@ [Term] id: GO:0098711 ! iron ion import across plasma membrane is_a: GO:0034755 {is_inferred="true"} ! iron ion transmembrane transport -is_a: GO:0097459 {is_inferred="true"} ! iron ion import into cell -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:0097286 {is_inferred="true"} ! iron ion import +is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane [Term] id: GO:0098712 ! L-glutamate import across plasma membrane @@ -58926,33 +58873,30 @@ [Term] id: GO:0098713 ! leucine import across plasma membrane +is_a: GO:0060356 {is_inferred="true"} ! leucine import is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport -is_a: GO:1990122 {is_inferred="true"} ! leucine import into cell [Term] id: GO:0098714 ! malate import across plasma membrane is_a: GO:0071423 {is_inferred="true"} ! malate transmembrane transport -is_a: GO:0097405 {is_inferred="true"} ! malate import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] id: GO:0098715 ! malonic acid import across plasma membrane -is_a: GO:0097406 {is_inferred="true"} ! malonic acid import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1901553 {is_inferred="true"} ! malonic acid transmembrane transport [Term] id: GO:0098716 ! nickel cation import across plasma membrane -is_a: GO:0090509 {is_inferred="true"} ! nickel cation import into cell -is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:0035444 {is_inferred="true"} ! nickel cation transmembrane transport +is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane [Term] id: GO:0098717 ! pantothenate import across plasma membrane is_a: GO:0015887 {is_inferred="true"} ! pantothenate transmembrane transport -is_a: GO:0044755 {is_inferred="true"} ! pantothenate import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:1901688 {is_inferred="true"} ! pantothenate import [Term] id: GO:0098718 ! serine import across plasma membrane @@ -58962,20 +58906,17 @@ [Term] id: GO:0098719 ! sodium ion import across plasma membrane -is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane -is_a: GO:1990118 {is_inferred="true"} ! sodium ion import into cell +is_a: GO:0097369 {is_inferred="true"} ! sodium ion import +is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import across plasma membrane [Term] id: GO:0098720 ! succinate import across plasma membrane is_a: GO:0071422 {is_inferred="true"} ! succinate transmembrane transport -is_a: GO:0097404 {is_inferred="true"} ! succinate import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] id: GO:0098721 ! uracil import across plasma membrane is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane -is_a: GO:1902431 {is_inferred="true"} ! uracil import into cell is_a: GO:1903791 {is_inferred="true"} ! uracil transmembrane transport [Term] @@ -60462,9 +60403,9 @@ is_a: GO:0099588 {is_inferred="true"} ! positive regulation of postsynaptic cytosolic calcium concentration [Term] -id: GO:0099587 ! inorganic ion import into cell -is_a: GO:0006811 {is_inferred="true"} ! ion transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell +id: GO:0099587 ! inorganic ion import across plasma membrane +is_a: GO:0098660 {is_inferred="true"} ! inorganic ion transmembrane transport +is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] id: GO:0099588 ! positive regulation of postsynaptic cytosolic calcium concentration @@ -73444,17 +73385,13 @@ is_a: GO:1902992 {is_inferred="true"} ! negative regulation of amyloid precursor protein catabolic process [Term] -id: GO:1902431 ! uracil import into cell -is_a: GO:0015857 {is_inferred="true"} ! uracil transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:1902433 ! positive regulation of water channel activity involved in maintenance of lens transparency is_a: GO:1902429 {is_inferred="true"} ! positive regulation of water channel activity [Term] -id: GO:1902434 ! sulfate import into cell -is_a: GO:0008272 {is_inferred="true"} ! sulfate transport +id: GO:1902434 ! sulfate import across plasma membrane +is_a: GO:0098658 {is_inferred="true"} ! inorganic anion import across plasma membrane +is_a: GO:1902358 {is_inferred="true"} ! sulfate transmembrane transport [Term] id: GO:1902435 ! regulation of male mating behavior @@ -75384,11 +75321,6 @@ is_a: GO:1902858 {is_inferred="true"} ! propionyl-CoA metabolic process [Term] -id: GO:1902861 ! copper ion import into cell -is_a: GO:0015677 {is_inferred="true"} ! copper ion import -is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell - -[Term] id: GO:1902863 ! regulation of embryonic camera-type eye development is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development @@ -76363,8 +76295,9 @@ is_a: GO:0071550 {is_inferred="true"} ! death-inducing signaling complex assembly [Term] -id: GO:1903075 ! pyridoxine import into cell -is_a: GO:0031923 {is_inferred="true"} ! pyridoxine transport +id: GO:1903075 ! pyridoxine import across plasma membrane +is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:1903092 {is_inferred="true"} ! pyridoxine transmembrane transport [Term] id: GO:1903076 ! regulation of protein localization to plasma membrane @@ -76626,15 +76559,6 @@ is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization [Term] -id: GO:1903129 ! negative regulation of leucine import into cell -is_a: GO:0060358 {is_inferred="true"} ! negative regulation of leucine import - -[Term] -id: GO:1903130 ! positive regulation of leucine import into cell -is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import - -[Term] id: GO:1903131 ! mononuclear cell differentiation is_a: GO:0002521 {is_inferred="true"} ! leukocyte differentiation @@ -77186,8 +77110,9 @@ is_a: GO:1903256 {is_inferred="true"} ! selenoneine metabolic process [Term] -id: GO:1903258 ! sorbose import into cell -is_a: GO:0008645 {is_inferred="true"} ! hexose transport +id: GO:1903258 ! sorbose import across plasma membrane +is_a: GO:0035428 {is_inferred="true"} ! hexose transmembrane transport +is_a: GO:0098704 {is_inferred="true"} ! carbohydrate import across plasma membrane [Term] id: GO:1903259 ! exon-exon junction complex disassembly @@ -80679,20 +80604,6 @@ is_a: GO:1903414 {is_inferred="true"} ! iron cation export [Term] -id: GO:1903989 ! regulation of ferrous iron import into cell -is_a: GO:1900390 {is_inferred="true"} ! regulation of iron ion import - -[Term] -id: GO:1903990 ! negative regulation of ferrous iron import into cell -is_a: GO:0034757 {is_inferred="true"} ! negative regulation of iron ion transport -is_a: GO:1903989 {is_inferred="true"} ! regulation of ferrous iron import into cell - -[Term] -id: GO:1903991 ! positive regulation of ferrous iron import into cell -is_a: GO:0034758 {is_inferred="true"} ! positive regulation of iron ion transport -is_a: GO:1903989 {is_inferred="true"} ! regulation of ferrous iron import into cell - -[Term] id: GO:1903995 ! regulation of non-membrane spanning protein tyrosine kinase activity is_a: GO:0061097 {is_inferred="true"} ! regulation of protein tyrosine kinase activity @@ -82830,18 +82741,16 @@ [Term] id: GO:1904438 ! regulation of ferrous iron import across plasma membrane is_a: GO:0034759 {is_inferred="true"} ! regulation of iron ion transmembrane transport -is_a: GO:1903989 {is_inferred="true"} ! regulation of ferrous iron import into cell +is_a: GO:1900390 {is_inferred="true"} ! regulation of iron ion import [Term] id: GO:1904439 ! negative regulation of ferrous iron import across plasma membrane is_a: GO:0034760 {is_inferred="true"} ! negative regulation of iron ion transmembrane transport -is_a: GO:1903990 {is_inferred="true"} ! negative regulation of ferrous iron import into cell is_a: GO:1904438 {is_inferred="true"} ! regulation of ferrous iron import across plasma membrane [Term] id: GO:1904440 ! positive regulation of ferrous iron import across plasma membrane is_a: GO:0034761 {is_inferred="true"} ! positive regulation of iron ion transmembrane transport -is_a: GO:1903991 {is_inferred="true"} ! positive regulation of ferrous iron import into cell is_a: GO:1904438 {is_inferred="true"} ! regulation of ferrous iron import across plasma membrane [Term] @@ -82884,8 +82793,11 @@ is_a: GO:2000020 {is_inferred="true"} ! positive regulation of male gonad development [Term] -id: GO:1904447 ! folic acid import into cell +id: GO:1904447 ! folic acid import across plasma membrane is_a: GO:0015884 {is_inferred="true"} ! folic acid transport +is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport +is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1904448 ! regulation of aspartate secretion @@ -84014,7 +83926,7 @@ [Term] id: GO:1904679 ! myo-inositol import across plasma membrane -is_a: GO:0097357 {is_inferred="true"} ! myo-inositol import into cell +is_a: GO:0015798 {is_inferred="true"} ! myo-inositol transport is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] @@ -85636,7 +85548,7 @@ [Term] id: GO:1905011 ! transmembrane phosphate ion transport from cytosol to vacuole -is_a: GO:0007034 {is_inferred="true"} ! vacuolar transport +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0035435 {is_inferred="true"} ! phosphate ion transmembrane transport [Term] @@ -86264,14 +86176,14 @@ [Term] id: GO:1905135 ! biotin import across plasma membrane is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport -is_a: GO:0044756 {is_inferred="true"} ! biotin import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:1901689 {is_inferred="true"} ! biotin import is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1905136 ! dethiobiotin import across plasma membrane -is_a: GO:0044757 {is_inferred="true"} ! dethiobiotin import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:1901690 {is_inferred="true"} ! dethiobiotin import is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] @@ -88160,7 +88072,7 @@ [Term] id: GO:1905533 ! negative regulation of leucine import across plasma membrane -is_a: GO:1903129 {is_inferred="true"} ! negative regulation of leucine import into cell +is_a: GO:0060358 {is_inferred="true"} ! negative regulation of leucine import is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane @@ -88167,7 +88079,7 @@ [Term] id: GO:1905534 ! positive regulation of leucine import across plasma membrane -is_a: GO:1903130 {is_inferred="true"} ! positive regulation of leucine import into cell +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane @@ -90273,11 +90185,6 @@ is_a: GO:1901660 {is_inferred="true"} ! calcium ion export [Term] -id: GO:1990035 ! calcium ion import into cell -is_a: GO:0070509 {is_inferred="true"} ! calcium ion import -is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell - -[Term] id: GO:1990036 ! calcium ion import into sarcoplasmic reticulum is_a: GO:0046907 {is_inferred="true"} ! intracellular transport is_a: GO:0070296 {is_inferred="true"} ! sarcoplasmic reticulum calcium ion transport @@ -90387,11 +90294,6 @@ is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] -id: GO:1990122 ! leucine import into cell -is_a: GO:0060356 {is_inferred="true"} ! leucine import -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:1990126 ! retrograde transport, endosome to plasma membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40034) +++ go_inferences.obo (working copy) @@ -45069,8 +45069,8 @@ [Term] id: GO:0051933 ! amino acid neurotransmitter reuptake +is_a: GO:0043090 {is_inferred="true"} ! amino acid import is_a: GO:0098810 {is_inferred="true"} ! neurotransmitter reuptake -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell [Term] id: GO:0051934 ! catecholamine uptake involved in synaptic transmission @@ -45080,7 +45080,6 @@ [Term] id: GO:0051935 ! glutamate reuptake is_a: GO:0051933 {is_inferred="true"} ! amino acid neurotransmitter reuptake -is_a: GO:1990123 {is_inferred="true"} ! L-glutamate import into cell [Term] id: GO:0051936 ! gamma-aminobutyric acid reuptake @@ -45134,6 +45133,7 @@ id: GO:0051946 ! regulation of glutamate uptake involved in transmission of nerve impulse is_a: GO:0051941 {is_inferred="true"} ! regulation of amino acid uptake involved in synaptic transmission is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport [Term] id: GO:0051947 ! regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse @@ -45144,6 +45144,7 @@ is_a: GO:0051942 {is_inferred="true"} ! negative regulation of amino acid uptake involved in synaptic transmission is_a: GO:0051946 {is_inferred="true"} ! regulation of glutamate uptake involved in transmission of nerve impulse is_a: GO:1900921 {is_inferred="true"} ! negative regulation of L-glutamate import +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport [Term] id: GO:0051949 ! negative regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse @@ -45160,6 +45161,7 @@ is_a: GO:0051943 {is_inferred="true"} ! positive regulation of amino acid uptake involved in synaptic transmission is_a: GO:0051946 {is_inferred="true"} ! regulation of glutamate uptake involved in transmission of nerve impulse is_a: GO:1900922 {is_inferred="true"} ! positive regulation of L-glutamate import +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport [Term] id: GO:0051955 ! regulation of amino acid transport @@ -48898,10 +48900,6 @@ is_a: GO:0098657 {is_inferred="true"} ! import into cell [Term] -id: GO:0061491 ! serine import into cell -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell - -[Term] id: GO:0061494 ! gamma-tubulin large complex, mitotic spindle pole body is_a: GO:0055032 {is_inferred="true"} ! gamma-tubulin large complex, spindle pole body @@ -55999,7 +55997,6 @@ id: GO:0089718 ! amino acid import across plasma membrane is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell [Term] id: GO:0089721 ! phosphoenolpyruvate transmembrane transporter activity @@ -57460,8 +57457,7 @@ [Term] id: GO:0090453 ! aspartate transmembrane import into vacuole is_a: GO:0015810 {is_inferred="true"} ! aspartate transport -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport -is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import +is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole [Term] id: GO:0090454 ! glutamate transmembrane import into vacuole @@ -57579,25 +57575,25 @@ [Term] id: GO:0090513 ! L-histidine transmembrane import into vacuole +is_a: GO:0061460 {is_inferred="true"} ! L-histidine import is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport -is_a: GO:1903810 {is_inferred="true"} ! L-histidine import into cell [Term] id: GO:0090514 ! L-tyrosine transmembrane import into vacuole +is_a: GO:0036232 {is_inferred="true"} ! L-tyrosine import is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport -is_a: GO:1903808 {is_inferred="true"} ! L-tyrosine import into cell [Term] id: GO:0090515 ! L-glutamate transmembrane import into vacuole is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport -is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import into cell +is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import across plasma membrane [Term] id: GO:0090516 ! L-serine transmembrane import into vacuole +is_a: GO:0090479 {is_inferred="true"} ! L-serine import is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport -is_a: GO:1903812 {is_inferred="true"} ! L-serine import into cell [Term] id: GO:0090517 ! L-lysine transmembrane import into vacuole @@ -58363,15 +58359,21 @@ [Term] id: GO:0097638 ! L-arginine import across plasma membrane +is_a: GO:0043091 {is_inferred="true"} ! L-arginine import is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1903400 {is_inferred="true"} ! L-arginine transmembrane transport [Term] id: GO:0097639 ! L-lysine import across plasma membrane +is_a: GO:0061461 {is_inferred="true"} ! L-lysine import is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:0097640 ! L-ornithine import across plasma membrane +is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1903352 {is_inferred="true"} ! L-ornithine transmembrane transport [Term] id: GO:0097648 ! G-protein coupled receptor complex @@ -58920,7 +58922,7 @@ id: GO:0098712 ! L-glutamate import across plasma membrane is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane -is_a: GO:1990123 {is_inferred="true"} ! L-glutamate import into cell +is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import across plasma membrane [Term] id: GO:0098713 ! leucine import across plasma membrane @@ -58954,8 +58956,8 @@ [Term] id: GO:0098718 ! serine import across plasma membrane -is_a: GO:0061491 {is_inferred="true"} ! serine import into cell is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0090478 {is_inferred="true"} ! serine import is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] @@ -61061,6 +61063,7 @@ id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane [Term] id: GO:0140010 ! D-aspartate transmembrane transporter activity @@ -61071,6 +61074,11 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] +id: GO:0140016 ! D-aspartate import across plasma membrane +is_a: GO:0070779 {is_inferred="true"} ! D-aspartate import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -74941,11 +74949,6 @@ is_a: GO:1902762 {is_inferred="true"} ! regulation of embryonic skeletal joint development [Term] -id: GO:1902765 ! L-arginine import into cell -is_a: GO:0043091 {is_inferred="true"} ! L-arginine import -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell - -[Term] id: GO:1902766 ! skeletal muscle satellite cell migration is_a: GO:0016477 {is_inferred="true"} ! cell migration @@ -75224,25 +75227,6 @@ is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport [Term] -id: GO:1902825 ! proline import into cell -is_a: GO:0015824 {is_inferred="true"} ! proline transport -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell - -[Term] -id: GO:1902826 ! regulation of L-arginine import into cell -is_a: GO:0010963 {is_inferred="true"} ! regulation of L-arginine import - -[Term] -id: GO:1902827 ! negative regulation of L-arginine import into cell -is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport -is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell - -[Term] -id: GO:1902828 ! positive regulation of L-arginine import into cell -is_a: GO:1901042 {is_inferred="true"} ! positive regulation of L-arginine import -is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell - -[Term] id: GO:1902829 ! regulation of spinal cord association neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -75267,26 +75251,27 @@ is_a: GO:2000179 {is_inferred="true"} ! positive regulation of neural precursor cell proliferation [Term] -id: GO:1902834 ! regulation of proline import into cell +id: GO:1902834 ! regulation of proline import across plasma membrane is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import is_a: GO:0070881 {is_inferred="true"} ! regulation of proline transport +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] -id: GO:1902835 ! negative regulation of proline import into cell +id: GO:1902835 ! negative regulation of proline import across plasma membrane is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport -is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell +is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import across plasma membrane +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport [Term] -id: GO:1902836 ! positive regulation of proline import into cell +id: GO:1902836 ! positive regulation of proline import across plasma membrane is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell +is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import across plasma membrane +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport [Term] -id: GO:1902837 ! amino acid import into cell -is_a: GO:0043090 {is_inferred="true"} ! amino acid import -is_a: GO:0098657 {is_inferred="true"} ! import into cell - -[Term] id: GO:1902838 ! regulation of nuclear migration along microtubule is_a: GO:1902513 {is_inferred="true"} ! regulation of organelle transport along microtubule @@ -76641,18 +76626,13 @@ is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization [Term] -id: GO:1903128 ! regulation of leucine import into cell -is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import - -[Term] id: GO:1903129 ! negative regulation of leucine import into cell is_a: GO:0060358 {is_inferred="true"} ! negative regulation of leucine import -is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell [Term] id: GO:1903130 ! positive regulation of leucine import into cell is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell +is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import [Term] id: GO:1903131 ! mononuclear cell differentiation @@ -77956,15 +77936,6 @@ is_a: GO:0072593 {is_inferred="true"} ! reactive oxygen species metabolic process [Term] -id: GO:1903410 ! L-lysine import into cell -is_a: GO:0061461 {is_inferred="true"} ! L-lysine import - -[Term] -id: GO:1903411 ! L-ornithine import into cell -is_a: GO:0015822 {is_inferred="true"} ! ornithine transport -is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import - -[Term] id: GO:1903412 ! response to bile acid is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound @@ -79297,8 +79268,10 @@ is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] -id: GO:1903692 ! methionine import into cell +id: GO:1903692 ! methionine import across plasma membrane is_a: GO:0044690 {is_inferred="true"} ! methionine import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:1903693 ! regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation @@ -79794,63 +79767,75 @@ is_a: GO:2000637 {is_inferred="true"} ! positive regulation of gene silencing by miRNA [Term] -id: GO:1903801 ! L-leucine import into cell +id: GO:1903801 ! L-leucine import across membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import -is_a: GO:0060356 {is_inferred="true"} ! leucine import +is_a: GO:0098713 {is_inferred="true"} ! leucine import across plasma membrane +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] -id: GO:1903802 ! L-glutamate(1-) import into cell +id: GO:1903802 ! L-glutamate(1-) import across plasma membrane is_a: GO:0051938 {is_inferred="true"} ! L-glutamate import [Term] -id: GO:1903803 ! L-glutamine import into cell +id: GO:1903803 ! L-glutamine import across plasma membrane is_a: GO:0036229 {is_inferred="true"} ! L-glutamine import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] -id: GO:1903804 ! glycine import into cell +id: GO:1903804 ! glycine import into across plasma membrane is_a: GO:0036233 {is_inferred="true"} ! glycine import [Term] -id: GO:1903805 ! L-valine import into cell +id: GO:1903805 ! L-valine import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane is_a: GO:0090468 {is_inferred="true"} ! valine import +is_a: GO:1903785 {is_inferred="true"} ! L-valine transmembrane transport [Term] -id: GO:1903806 ! L-isoleucine import into cell +id: GO:1903806 ! L-isoleucine import across plasma membrane +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane is_a: GO:0090477 {is_inferred="true"} ! L-isoleucine import +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport +is_a: GO:1903714 {is_inferred="true"} ! isoleucine transmembrane transport [Term] -id: GO:1903807 ! L-threonine import into cell +id: GO:1903807 ! L-threonine import across plasma membrane is_a: GO:0036231 {is_inferred="true"} ! L-threonine import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] -id: GO:1903808 ! L-tyrosine import into cell +id: GO:1903808 ! L-tyrosine import across plasma membrane is_a: GO:0036232 {is_inferred="true"} ! L-tyrosine import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] -id: GO:1903809 ! L-proline import into cell -is_a: GO:0015824 {is_inferred="true"} ! proline transport -is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import - -[Term] -id: GO:1903810 ! L-histidine import into cell +id: GO:1903810 ! L-histidine import across plasma membrane is_a: GO:0061460 {is_inferred="true"} ! L-histidine import +is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane [Term] -id: GO:1903811 ! L-asparagine import into cell +id: GO:1903811 ! L-asparagine import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane is_a: GO:0090469 {is_inferred="true"} ! asparagine import +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport +is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport [Term] -id: GO:1903812 ! L-serine import into cell +id: GO:1903812 ! L-serine import across plasma membrane is_a: GO:0090479 {is_inferred="true"} ! L-serine import +is_a: GO:0098718 {is_inferred="true"} ! serine import across plasma membrane +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] -id: GO:1903813 ! L-methionine import into cell -is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import -is_a: GO:1903692 {is_inferred="true"} ! methionine import into cell - -[Term] id: GO:1903814 ! regulation of collecting lymphatic vessel constriction is_a: GO:0044057 {is_inferred="true"} ! regulation of system process is_a: GO:0090066 {is_inferred="true"} ! regulation of anatomical structure size @@ -82020,7 +82005,7 @@ [Term] id: GO:1904271 ! L-proline import across plasma membrane -is_a: GO:1903809 {is_inferred="true"} ! L-proline import into cell +is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:1904555 {is_inferred="true"} ! L-proline transmembrane transport is_a: GO:1905647 {is_inferred="true"} ! proline import across plasma membrane @@ -85630,18 +85615,24 @@ is_a: GO:1905005 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition involved in endocardial cushion formation [Term] -id: GO:1905008 ! regulation of L-lysine import into cell +id: GO:1905008 ! regulation of L-lysine import across plasma membrane is_a: GO:0010805 {is_inferred="true"} ! regulation of lysine import +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] -id: GO:1905009 ! negative regulation of L-lysine import into cell +id: GO:1905009 ! negative regulation of L-lysine import across plasma membrane is_a: GO:0010806 {is_inferred="true"} ! negative regulation of lysine import -is_a: GO:1905008 {is_inferred="true"} ! regulation of L-lysine import into cell +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1905008 {is_inferred="true"} ! regulation of L-lysine import across plasma membrane [Term] -id: GO:1905010 ! positive regulation of L-lysine import into cell +id: GO:1905010 ! positive regulation of L-lysine import across plasma membrane is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:1905008 {is_inferred="true"} ! regulation of L-lysine import into cell +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport +is_a: GO:1905008 {is_inferred="true"} ! regulation of L-lysine import across plasma membrane [Term] id: GO:1905011 ! transmembrane phosphate ion transport from cytosol to vacuole @@ -88163,7 +88154,7 @@ [Term] id: GO:1905532 ! regulation of leucine import across plasma membrane -is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell +is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport @@ -88210,13 +88201,13 @@ [Term] id: GO:1905541 ! regulation of L-arginine import across plasma membrane -is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell +is_a: GO:0010963 {is_inferred="true"} ! regulation of L-arginine import is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1905542 ! negative regulation of L-arginine import across plasma membrane -is_a: GO:1902827 {is_inferred="true"} ! negative regulation of L-arginine import into cell +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane @@ -88228,10 +88219,9 @@ [Term] id: GO:1905544 ! L-methionine import across plasma membrane -is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane -is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport -is_a: GO:1903813 {is_inferred="true"} ! L-methionine import into cell +is_a: GO:1903692 {is_inferred="true"} ! methionine import across plasma membrane [Term] id: GO:1905546 ! cellular response to phenylpropanoid @@ -88425,7 +88415,7 @@ [Term] id: GO:1905589 ! positive regulation of L-arginine import across plasma membrane -is_a: GO:1902828 {is_inferred="true"} ! positive regulation of L-arginine import into cell +is_a: GO:1901042 {is_inferred="true"} ! positive regulation of L-arginine import is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane @@ -88722,7 +88712,6 @@ id: GO:1905647 ! proline import across plasma membrane is_a: GO:0035524 {is_inferred="true"} ! proline transmembrane transport is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane -is_a: GO:1902825 {is_inferred="true"} ! proline import into cell [Term] id: GO:1905648 ! regulation of shell calcification @@ -89080,22 +89069,16 @@ [Term] id: GO:1905735 ! regulation of L-proline import across plasma membrane -is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell -is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport -is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport +is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import across plasma membrane [Term] id: GO:1905736 ! negative regulation of L-proline import across plasma membrane -is_a: GO:1902835 {is_inferred="true"} ! negative regulation of proline import into cell -is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport -is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1902835 {is_inferred="true"} ! negative regulation of proline import across plasma membrane is_a: GO:1905735 {is_inferred="true"} ! regulation of L-proline import across plasma membrane [Term] id: GO:1905737 ! positive regulation of L-proline import across plasma membrane -is_a: GO:1902836 {is_inferred="true"} ! positive regulation of proline import into cell -is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport -is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport +is_a: GO:1902836 {is_inferred="true"} ! positive regulation of proline import across plasma membrane is_a: GO:1905735 {is_inferred="true"} ! regulation of L-proline import across plasma membrane [Term] @@ -90406,14 +90389,9 @@ [Term] id: GO:1990122 ! leucine import into cell is_a: GO:0060356 {is_inferred="true"} ! leucine import -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell +is_a: GO:0098657 {is_inferred="true"} ! import into cell [Term] -id: GO:1990123 ! L-glutamate import into cell -is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell -is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import into cell - -[Term] id: GO:1990126 ! retrograde transport, endosome to plasma membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane @@ -90967,8 +90945,7 @@ [Term] id: GO:1990591 ! asparagine transmembrane import into vacuole -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport -is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import +is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole is_a: GO:0090469 {is_inferred="true"} ! asparagine import is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40027) +++ go_inferences.obo (working copy) @@ -60988,7 +60988,7 @@ is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation [Term] -id: GO:0120008 ! positive regulation of glutamatergic neuron differentiation +id: GO:0120008 ! positive regulation of glutamatergic neuron differentiation is_a: GO:0045666 {is_inferred="true"} ! positive regulation of neuron differentiation is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40006) +++ go_inferences.obo (working copy) @@ -559,6 +559,10 @@ is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex [Term] +id: GO:0000278 ! mitotic cell cycle +is_a: GO:0007049 {is_inferred="true"} ! cell cycle + +[Term] id: GO:0000281 ! mitotic cytokinesis is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -7930,10 +7934,6 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] -id: GO:0007067 ! mitotic nuclear division -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process - -[Term] id: GO:0007072 ! positive regulation of transcription involved in exit from mitosis is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -30654,7 +30654,7 @@ [Term] id: GO:0040001 ! establishment of mitotic spindle localization is_a: GO:0051293 {is_inferred="true"} ! establishment of spindle localization -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process +is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:0040014 ! regulation of multicellular organism growth @@ -30676,6 +30676,7 @@ [Term] id: GO:0040020 ! regulation of meiotic nuclear division is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process +is_a: GO:0051445 {is_inferred="true"} ! regulation of meiotic cell cycle [Term] id: GO:0040023 ! establishment of nucleus localization @@ -43736,6 +43737,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0051321 ! meiotic cell cycle +is_a: GO:0007049 {is_inferred="true"} ! cell cycle + +[Term] id: GO:0051327 ! meiotic M phase is_a: GO:0098762 {is_inferred="true"} ! meiotic cell cycle phase @@ -46148,7 +46153,7 @@ [Term] id: GO:0060236 ! regulation of mitotic spindle organization -is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division +is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle is_a: GO:0090224 {is_inferred="true"} ! regulation of spindle organization [Term] @@ -60949,6 +60954,10 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] +id: GO:0101026 ! nuclear membrane biogenesis involved in mitotic nuclear division +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process + +[Term] id: GO:0101028 ! positive regulation of liquid surface tension is_a: GO:0050828 {is_inferred="true"} ! regulation of liquid surface tension @@ -61058,6 +61067,10 @@ is_a: GO:0015556 {is_inferred="true"} ! C4-dicarboxylate transmembrane transporter activity [Term] +id: GO:0140014 ! mitotic nuclear division +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -69585,6 +69598,7 @@ [Term] id: GO:1901673 ! regulation of mitotic spindle assembly +is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division is_a: GO:0060236 {is_inferred="true"} ! regulation of mitotic spindle organization is_a: GO:0090169 {is_inferred="true"} ! regulation of spindle assembly @@ -84055,8 +84069,9 @@ [Term] id: GO:1904687 ! positive regulation of mitotic spindle disassembly -is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division +is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process is_a: GO:1904686 {is_inferred="true"} ! regulation of mitotic spindle disassembly [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 40003) +++ go_inferences.obo (working copy) @@ -60965,6 +60965,11 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] +id: GO:0110001 ! toxin-antitoxin complex +is_a: GO:0005667 {is_inferred="true"} ! transcription factor complex +is_a: GO:0017053 {is_inferred="true"} ! transcriptional repressor complex + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39907) +++ go_inferences.obo (working copy) @@ -390,13 +390,11 @@ [Term] id: GO:0000167 ! activation of MAPKKK activity involved in osmosensory signaling pathway -is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:0000168 {is_inferred="true"} ! activation of MAPKK activity involved in osmosensory signaling pathway [Term] id: GO:0000168 ! activation of MAPKK activity involved in osmosensory signaling pathway -is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:0000169 {is_inferred="true"} ! activation of MAPK activity involved in osmosensory signaling pathway [Term] id: GO:0000169 ! activation of MAPK activity involved in osmosensory signaling pathway @@ -424,14 +422,11 @@ [Term] id: GO:0000185 ! activation of MAPKKK activity -is_a: GO:0043405 {is_inferred="true"} ! regulation of MAP kinase activity -is_a: GO:0043410 {is_inferred="true"} ! positive regulation of MAPK cascade -is_a: GO:0071902 {is_inferred="true"} ! positive regulation of protein serine/threonine kinase activity +is_a: GO:0043406 {is_inferred="true"} ! positive regulation of MAP kinase activity [Term] id: GO:0000186 ! activation of MAPKK activity -is_a: GO:0043405 {is_inferred="true"} ! regulation of MAP kinase activity -is_a: GO:0043410 {is_inferred="true"} ! positive regulation of MAPK cascade +is_a: GO:0043406 {is_inferred="true"} ! positive regulation of MAP kinase activity [Term] id: GO:0000196 ! MAPK cascade involved in cell wall organization or biogenesis @@ -439,11 +434,11 @@ [Term] id: GO:0000197 ! activation of MAPKKK activity involved in cell wall organization or biogenesis -is_a: GO:1903139 {is_inferred="true"} ! positive regulation of MAPK cascade involved in cell wall organization or biogenesis +is_a: GO:0000198 {is_inferred="true"} ! activation of MAPKK activity involved in cell wall organization or biogenesis [Term] id: GO:0000198 ! activation of MAPKK activity involved in cell wall organization or biogenesis -is_a: GO:1903139 {is_inferred="true"} ! positive regulation of MAPK cascade involved in cell wall organization or biogenesis +is_a: GO:0000199 {is_inferred="true"} ! activation of MAPK activity involved in cell wall organization or biogenesis [Term] id: GO:0000199 ! activation of MAPK activity involved in cell wall organization or biogenesis @@ -8102,8 +8097,7 @@ [Term] id: GO:0007256 ! activation of JNKK activity -is_a: GO:0043506 {is_inferred="true"} ! regulation of JUN kinase activity -is_a: GO:0046330 {is_inferred="true"} ! positive regulation of JNK cascade +is_a: GO:0043507 {is_inferred="true"} ! positive regulation of JUN kinase activity [Term] id: GO:0007267 ! cell-cell signaling @@ -8724,9 +8718,8 @@ [Term] id: GO:0008588 ! release of cytoplasmic sequestered NF-kappaB -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0042347 {is_inferred="true"} ! negative regulation of NF-kappaB import into nucleus is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality -is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization [Term] id: GO:0008589 ! regulation of smoothened signaling pathway @@ -11768,6 +11761,7 @@ [Term] id: GO:0010524 ! positive regulation of calcium ion transport into cytosol +is_a: GO:0007204 {is_inferred="true"} ! positive regulation of cytosolic calcium ion concentration is_a: GO:0010522 {is_inferred="true"} ! regulation of calcium ion transport into cytosol is_a: GO:0032846 {is_inferred="true"} ! positive regulation of homeostatic process is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process @@ -11822,6 +11816,8 @@ [Term] id: GO:0010536 ! positive regulation of activation of Janus kinase activity is_a: GO:0010533 {is_inferred="true"} ! regulation of activation of Janus kinase activity +is_a: GO:0045860 {is_inferred="true"} ! positive regulation of protein kinase activity +is_a: GO:0046427 {is_inferred="true"} ! positive regulation of JAK-STAT cascade is_a: GO:0050731 {is_inferred="true"} ! positive regulation of peptidyl-tyrosine phosphorylation [Term] @@ -20605,6 +20601,7 @@ [Term] id: GO:0030712 ! negative regulation of border follicle cell delamination +is_a: GO:0022408 {is_inferred="true"} ! negative regulation of cell-cell adhesion is_a: GO:0022409 {is_inferred="true"} ! positive regulation of cell-cell adhesion is_a: GO:0030710 {is_inferred="true"} ! regulation of border follicle cell delamination is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation @@ -22511,6 +22508,7 @@ [Term] id: GO:0031936 ! negative regulation of chromatin silencing is_a: GO:0031935 {is_inferred="true"} ! regulation of chromatin silencing +is_a: GO:0045892 {is_inferred="true"} ! negative regulation of transcription, DNA-templated is_a: GO:0060969 {is_inferred="true"} ! negative regulation of gene silencing is_a: GO:1905268 {is_inferred="true"} ! negative regulation of chromatin organization @@ -24876,6 +24874,7 @@ is_a: GO:0032845 {is_inferred="true"} ! negative regulation of homeostatic process is_a: GO:0032847 {is_inferred="true"} ! regulation of cellular pH reduction is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0051452 {is_inferred="true"} ! intracellular pH reduction is_a: GO:0051454 {is_inferred="true"} ! intracellular pH elevation [Term] @@ -27239,9 +27238,9 @@ [Term] id: GO:0034123 ! positive regulation of toll-like receptor signaling pathway -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction is_a: GO:0034121 {is_inferred="true"} ! regulation of toll-like receptor signaling pathway +is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response [Term] id: GO:0034124 ! regulation of MyD88-dependent toll-like receptor signaling pathway @@ -28947,6 +28946,14 @@ is_a: GO:0000165 {is_inferred="true"} ! MAPK cascade [Term] +id: GO:0035421 ! activation of MAPKK activity involved in innate immune response +is_a: GO:0035419 {is_inferred="true"} ! activation of MAPK activity involved in innate immune response + +[Term] +id: GO:0035422 ! activation of MAPKKK activity involved in innate immune response +is_a: GO:0035421 {is_inferred="true"} ! activation of MAPKK activity involved in innate immune response + +[Term] id: GO:0035423 ! inactivation of MAPK activity involved in innate immune response is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response @@ -30509,6 +30516,10 @@ is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] +id: GO:0038176 ! positive regulation of SREBP signaling pathway in response to decreased oxygen levels +is_a: GO:1901522 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus + +[Term] id: GO:0038197 ! type I interferon receptor complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -31967,8 +31978,7 @@ [Term] id: GO:0042655 ! activation of JNKKK activity -is_a: GO:0043506 {is_inferred="true"} ! regulation of JUN kinase activity -is_a: GO:0046330 {is_inferred="true"} ! positive regulation of JNK cascade +is_a: GO:0043507 {is_inferred="true"} ! positive regulation of JUN kinase activity [Term] id: GO:0042659 ! regulation of cell fate specification @@ -37133,6 +37143,7 @@ [Term] id: GO:0045756 ! positive regulation of initiation of acetate catabolic process by acetate is_a: GO:0045147 {is_inferred="true"} ! regulation of initiation of acetate catabolic process by acetate +is_a: GO:0045754 {is_inferred="true"} ! positive regulation of acetate catabolic process is_a: GO:1901459 {is_inferred="true"} ! positive regulation of response to acetate [Term] @@ -37600,6 +37611,7 @@ id: GO:0045906 ! negative regulation of vasoconstriction is_a: GO:0019229 {is_inferred="true"} ! regulation of vasoconstriction is_a: GO:0097755 {is_inferred="true"} ! positive regulation of blood vessel diameter +is_a: GO:0097756 {is_inferred="true"} ! negative regulation of blood vessel diameter is_a: GO:1903523 {is_inferred="true"} ! negative regulation of blood circulation [Term] @@ -42756,8 +42768,8 @@ [Term] id: GO:0050857 ! positive regulation of antigen receptor-mediated signaling pathway -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction +is_a: GO:0050778 {is_inferred="true"} ! positive regulation of immune response is_a: GO:0050854 {is_inferred="true"} ! regulation of antigen receptor-mediated signaling pathway [Term] @@ -43257,8 +43269,8 @@ [Term] id: GO:0051127 ! positive regulation of actin nucleation +is_a: GO:0030838 {is_inferred="true"} ! positive regulation of actin filament polymerization is_a: GO:0051125 {is_inferred="true"} ! regulation of actin nucleation -is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0051133 ! regulation of NK T cell activation @@ -43618,6 +43630,7 @@ id: GO:0051280 ! negative regulation of release of sequestered calcium ion into cytosol is_a: GO:0010523 {is_inferred="true"} ! negative regulation of calcium ion transport into cytosol is_a: GO:0051279 {is_inferred="true"} ! regulation of release of sequestered calcium ion into cytosol +is_a: GO:0051283 {is_inferred="true"} ! negative regulation of sequestering of calcium ion is_a: GO:0051284 {is_inferred="true"} ! positive regulation of sequestering of calcium ion is_a: GO:0090281 {is_inferred="true"} ! negative regulation of calcium ion import is_a: GO:1903170 {is_inferred="true"} ! negative regulation of calcium ion transmembrane transport @@ -45026,8 +45039,8 @@ [Term] id: GO:0051918 ! negative regulation of fibrinolysis +is_a: GO:0030195 {is_inferred="true"} ! negative regulation of blood coagulation is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process is_a: GO:0051917 {is_inferred="true"} ! regulation of fibrinolysis [Term] @@ -46513,8 +46526,8 @@ [Term] id: GO:0060369 ! positive regulation of Fc receptor mediated stimulatory signaling pathway -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction +is_a: GO:0050778 {is_inferred="true"} ! positive regulation of immune response is_a: GO:0060368 {is_inferred="true"} ! regulation of Fc receptor mediated stimulatory signaling pathway [Term] @@ -46842,8 +46855,10 @@ [Term] id: GO:0060520 ! activation of prostate induction by androgen receptor signaling pathway -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development is_a: GO:0060685 {is_inferred="true"} ! regulation of prostatic bud formation +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] id: GO:0060521 ! mesenchymal-epithelial cell signaling involved in prostate induction @@ -47894,6 +47909,7 @@ [Term] id: GO:0060965 ! negative regulation of gene silencing by miRNA +is_a: GO:0017148 {is_inferred="true"} ! negative regulation of translation is_a: GO:0045727 {is_inferred="true"} ! positive regulation of translation is_a: GO:0060149 {is_inferred="true"} ! negative regulation of posttranscriptional gene silencing is_a: GO:0060964 {is_inferred="true"} ! regulation of gene silencing by miRNA @@ -47915,6 +47931,7 @@ [Term] id: GO:0060969 ! negative regulation of gene silencing +is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:0060968 {is_inferred="true"} ! regulation of gene silencing @@ -50066,7 +50083,7 @@ [Term] id: GO:0070426 ! positive regulation of nucleotide-binding oligomerization domain containing signaling pathway -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process +is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response is_a: GO:0070424 {is_inferred="true"} ! regulation of nucleotide-binding oligomerization domain containing signaling pathway is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction @@ -52553,11 +52570,11 @@ [Term] id: GO:0071509 ! activation of MAPKK activity involved in conjugation with cellular fusion -is_a: GO:0090028 {is_inferred="true"} ! positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion +is_a: GO:0071508 {is_inferred="true"} ! activation of MAPK activity involved in conjugation with cellular fusion [Term] id: GO:0071510 ! activation of MAPKKK activity involved in conjugation with cellular fusion -is_a: GO:0090028 {is_inferred="true"} ! positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion +is_a: GO:0071509 {is_inferred="true"} ! activation of MAPKK activity involved in conjugation with cellular fusion [Term] id: GO:0071511 ! inactivation of MAPK activity involved in conjugation with cellular fusion @@ -62165,8 +62182,7 @@ [Term] id: GO:1900237 ! positive regulation of induction of conjugation with cellular fusion -is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:0031139 {is_inferred="true"} ! positive regulation of conjugation with cellular fusion [Term] id: GO:1900238 ! regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway @@ -62206,21 +62222,23 @@ [Term] id: GO:1900245 ! positive regulation of MDA-5 signaling pathway +is_a: GO:0001819 {is_inferred="true"} ! positive regulation of cytokine production is_a: GO:0002699 {is_inferred="true"} ! positive regulation of immune effector process is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus -is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039533 {is_inferred="true"} ! regulation of MDA-5 signaling pathway +is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] id: GO:1900246 ! positive regulation of RIG-I signaling pathway +is_a: GO:0001819 {is_inferred="true"} ! positive regulation of cytokine production is_a: GO:0002699 {is_inferred="true"} ! positive regulation of immune effector process is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus -is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway +is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction @@ -62331,7 +62349,7 @@ [Term] id: GO:1900273 ! positive regulation of long-term synaptic potentiation -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:0050806 {is_inferred="true"} ! positive regulation of synaptic transmission is_a: GO:1900271 {is_inferred="true"} ! regulation of long-term synaptic potentiation [Term] @@ -62373,6 +62391,7 @@ [Term] id: GO:1900281 ! positive regulation of CD4-positive, alpha-beta T cell costimulation is_a: GO:1900279 {is_inferred="true"} ! regulation of CD4-positive, alpha-beta T cell costimulation +is_a: GO:2000516 {is_inferred="true"} ! positive regulation of CD4-positive, alpha-beta T cell activation is_a: GO:2000525 {is_inferred="true"} ! positive regulation of T cell costimulation [Term] @@ -63016,7 +63035,7 @@ [Term] id: GO:1900404 ! positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0006282 {is_inferred="true"} ! regulation of DNA repair +is_a: GO:0045739 {is_inferred="true"} ! positive regulation of DNA repair is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter [Term] @@ -63063,6 +63082,7 @@ [Term] id: GO:1900417 ! negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:1900392 {is_inferred="true"} ! regulation of transport by negative regulation of transcription from RNA polymerase II promoter @@ -63088,12 +63108,12 @@ [Term] id: GO:1900422 ! positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter -is_a: GO:1900419 {is_inferred="true"} ! regulation of cellular alcohol catabolic process +is_a: GO:1900421 {is_inferred="true"} ! positive regulation of cellular alcohol catabolic process [Term] id: GO:1900423 ! positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter +is_a: GO:1900374 {is_inferred="true"} ! positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900424 ! regulation of defense response to bacterium @@ -63254,7 +63274,7 @@ [Term] id: GO:1900453 ! negative regulation of long term synaptic depression -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:0050805 {is_inferred="true"} ! negative regulation of synaptic transmission is_a: GO:0050806 {is_inferred="true"} ! positive regulation of synaptic transmission is_a: GO:1900452 {is_inferred="true"} ! regulation of long term synaptic depression @@ -63311,7 +63331,7 @@ is_a: GO:0033243 {is_inferred="true"} ! positive regulation of cellular amine catabolic process is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:0072365 {is_inferred="true"} ! regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:1900081 {is_inferred="true"} ! regulation of arginine catabolic process +is_a: GO:1900082 {is_inferred="true"} ! negative regulation of arginine catabolic process [Term] id: GO:1900466 ! positive regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter @@ -63646,6 +63666,7 @@ [Term] id: GO:1900526 ! negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter +is_a: GO:1900469 {is_inferred="true"} ! negative regulation of phosphatidylserine biosynthetic process is_a: GO:1900470 {is_inferred="true"} ! positive regulation of phosphatidylserine biosynthetic process [Term] @@ -67868,6 +67889,7 @@ [Term] id: GO:1901321 ! positive regulation of heart induction is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0090381 {is_inferred="true"} ! regulation of heart induction [Term] @@ -71160,8 +71182,8 @@ [Term] id: GO:1901977 ! negative regulation of cell cycle checkpoint +is_a: GO:0045786 {is_inferred="true"} ! negative regulation of cell cycle is_a: GO:0045787 {is_inferred="true"} ! positive regulation of cell cycle -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint [Term] @@ -73116,6 +73138,7 @@ [Term] id: GO:1902373 ! negative regulation of mRNA catabolic process is_a: GO:0010628 {is_inferred="true"} ! positive regulation of gene expression +is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression is_a: GO:0061013 {is_inferred="true"} ! regulation of mRNA catabolic process is_a: GO:1902369 {is_inferred="true"} ! negative regulation of RNA catabolic process is_a: GO:1903312 {is_inferred="true"} ! negative regulation of mRNA metabolic process @@ -73366,9 +73389,8 @@ [Term] id: GO:1902426 ! deactivation of mitotic spindle assembly checkpoint -is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0045841 {is_inferred="true"} ! negative regulation of mitotic metaphase/anaphase transition is_a: GO:0045842 {is_inferred="true"} ! positive regulation of mitotic metaphase/anaphase transition -is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle is_a: GO:0090233 {is_inferred="true"} ! negative regulation of spindle checkpoint is_a: GO:0090266 {is_inferred="true"} ! regulation of mitotic cell cycle spindle assembly checkpoint @@ -73687,6 +73709,7 @@ [Term] id: GO:1902505 ! negative regulation of signal transduction involved in mitotic G2 DNA damage checkpoint is_a: GO:0010971 {is_inferred="true"} ! positive regulation of G2/M transition of mitotic cell cycle +is_a: GO:0010972 {is_inferred="true"} ! negative regulation of G2/M transition of mitotic cell cycle is_a: GO:1902504 {is_inferred="true"} ! regulation of signal transduction involved in mitotic G2 DNA damage checkpoint is_a: GO:1902532 {is_inferred="true"} ! negative regulation of intracellular signal transduction is_a: GO:1904290 {is_inferred="true"} ! negative regulation of mitotic DNA damage checkpoint @@ -75448,6 +75471,7 @@ [Term] id: GO:1902879 ! negative regulation of BMP signaling pathway involved in spinal cord association neuron specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification +is_a: GO:0021914 {is_inferred="true"} ! negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning is_a: GO:0030514 {is_inferred="true"} ! negative regulation of BMP signaling pathway is_a: GO:0045880 {is_inferred="true"} ! positive regulation of smoothened signaling pathway is_a: GO:0051962 {is_inferred="true"} ! positive regulation of nervous system development @@ -75489,7 +75513,7 @@ [Term] id: GO:1902887 ! positive regulation of proteasome-activating ATPase activity is_a: GO:0032781 {is_inferred="true"} ! positive regulation of ATPase activity -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1901800 {is_inferred="true"} ! positive regulation of proteasomal protein catabolic process is_a: GO:1902885 {is_inferred="true"} ! regulation of proteasome-activating ATPase activity [Term] @@ -77108,9 +77132,9 @@ [Term] id: GO:1903247 ! positive regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate +is_a: GO:0045823 {is_inferred="true"} ! positive regulation of heart contraction is_a: GO:1901206 {is_inferred="true"} ! positive regulation of adrenergic receptor signaling pathway involved in heart process is_a: GO:1903245 {is_inferred="true"} ! regulation of adrenergic receptor signaling pathway involved in positive regulation of heart rate -is_a: GO:1903524 {is_inferred="true"} ! positive regulation of blood circulation [Term] id: GO:1903248 ! regulation of citrulline biosynthetic process @@ -79309,7 +79333,6 @@ [Term] id: GO:1903704 ! negative regulation of production of siRNA involved in RNA interference -is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus is_a: GO:0051253 {is_inferred="true"} ! negative regulation of RNA metabolic process is_a: GO:0090065 {is_inferred="true"} ! regulation of production of siRNA involved in RNA interference @@ -79738,7 +79761,6 @@ [Term] id: GO:1903799 ! negative regulation of production of miRNAs involved in gene silencing by miRNA -is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus is_a: GO:0051253 {is_inferred="true"} ! negative regulation of RNA metabolic process is_a: GO:0060965 {is_inferred="true"} ! negative regulation of gene silencing by miRNA @@ -80697,7 +80719,7 @@ [Term] id: GO:1904001 ! positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter -is_a: GO:1903930 {is_inferred="true"} ! regulation of pyrimidine-containing compound salvage +is_a: GO:1903931 {is_inferred="true"} ! positive regulation of pyrimidine-containing compound salvage [Term] id: GO:1904002 ! regulation of sebum secreting cell proliferation @@ -80785,6 +80807,7 @@ [Term] id: GO:1904021 ! negative regulation of G-protein coupled receptor internalization is_a: GO:0002091 {is_inferred="true"} ! negative regulation of receptor internalization +is_a: GO:0045744 {is_inferred="true"} ! negative regulation of G-protein coupled receptor protein signaling pathway is_a: GO:0045745 {is_inferred="true"} ! positive regulation of G-protein coupled receptor protein signaling pathway is_a: GO:1904020 {is_inferred="true"} ! regulation of G-protein coupled receptor internalization @@ -82250,6 +82273,7 @@ [Term] id: GO:1904324 ! negative regulation of inhibitory G-protein coupled receptor phosphorylation is_a: GO:0001933 {is_inferred="true"} ! negative regulation of protein phosphorylation +is_a: GO:0045744 {is_inferred="true"} ! negative regulation of G-protein coupled receptor protein signaling pathway is_a: GO:0045745 {is_inferred="true"} ! positive regulation of G-protein coupled receptor protein signaling pathway is_a: GO:1904323 {is_inferred="true"} ! regulation of inhibitory G-protein coupled receptor phosphorylation @@ -83129,6 +83153,7 @@ [Term] id: GO:1904501 ! positive regulation of chromatin-mediated maintenance of transcription +is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated is_a: GO:1904499 {is_inferred="true"} ! regulation of chromatin-mediated maintenance of transcription is_a: GO:1905269 {is_inferred="true"} ! positive regulation of chromatin organization @@ -86014,8 +86039,8 @@ [Term] id: GO:1905091 ! positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1901526 {is_inferred="true"} ! positive regulation of macromitophagy is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization [Term] @@ -86053,14 +86078,14 @@ [Term] id: GO:1905098 ! negative regulation of guanyl-nucleotide exchange factor activity -is_a: GO:0044092 {is_inferred="true"} ! negative regulation of molecular function is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process is_a: GO:0051099 {is_inferred="true"} ! positive regulation of binding +is_a: GO:0051100 {is_inferred="true"} ! negative regulation of binding is_a: GO:1905097 {is_inferred="true"} ! regulation of guanyl-nucleotide exchange factor activity [Term] id: GO:1905099 ! positive regulation of guanyl-nucleotide exchange factor activity -is_a: GO:0044093 {is_inferred="true"} ! positive regulation of molecular function +is_a: GO:0043547 {is_inferred="true"} ! positive regulation of GTPase activity is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process is_a: GO:1905097 {is_inferred="true"} ! regulation of guanyl-nucleotide exchange factor activity @@ -87065,6 +87090,7 @@ [Term] id: GO:1905309 ! positive regulation of cohesin loading +is_a: GO:0043388 {is_inferred="true"} ! positive regulation of DNA binding is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion is_a: GO:0071922 {is_inferred="true"} ! regulation of cohesin loading is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization @@ -87195,8 +87221,9 @@ [Term] id: GO:1905338 ! negative regulation of cohesin unloading is_a: GO:0043388 {is_inferred="true"} ! positive regulation of DNA binding +is_a: GO:0043392 {is_inferred="true"} ! negative regulation of DNA binding +is_a: GO:0045875 {is_inferred="true"} ! negative regulation of sister chromatid cohesion is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process is_a: GO:1905343 {is_inferred="true"} ! regulation of cohesin unloading [Term] @@ -93780,7 +93807,7 @@ [Term] id: GO:2000525 ! positive regulation of T cell costimulation -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process +is_a: GO:0050870 {is_inferred="true"} ! positive regulation of T cell activation is_a: GO:2000523 {is_inferred="true"} ! regulation of T cell costimulation [Term] @@ -94311,6 +94338,7 @@ [Term] id: GO:2000640 ! positive regulation of SREBP signaling pathway is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter is_a: GO:2000638 {is_inferred="true"} ! regulation of SREBP signaling pathway [Term] @@ -95197,9 +95225,10 @@ [Term] id: GO:2000813 ! negative regulation of barbed-end actin filament capping +is_a: GO:0030835 {is_inferred="true"} ! negative regulation of actin filament depolymerization is_a: GO:0030836 {is_inferred="true"} ! positive regulation of actin filament depolymerization +is_a: GO:0030837 {is_inferred="true"} ! negative regulation of actin filament polymerization is_a: GO:0030838 {is_inferred="true"} ! positive regulation of actin filament polymerization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:2000812 {is_inferred="true"} ! regulation of barbed-end actin filament capping [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39852) +++ go_inferences.obo (working copy) @@ -1747,7 +1747,7 @@ [Term] id: GO:0001931 ! uropod -is_a: GO:0042995 {is_inferred="true"} ! cell projection +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection [Term] id: GO:0001932 ! regulation of protein phosphorylation @@ -29292,6 +29292,10 @@ is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] +id: GO:0035618 ! root hair +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0035622 ! intrahepatic bile duct development is_a: GO:0061009 {is_inferred="true"} ! common bile duct development @@ -30058,6 +30062,10 @@ is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] +id: GO:0036194 ! muscle cell projection +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0036196 ! zymosterol metabolic process is_a: GO:0016125 {is_inferred="true"} ! sterol metabolic process is_a: GO:1902652 {is_inferred="true"} ! secondary alcohol metabolic process @@ -57358,6 +57366,10 @@ is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] +id: GO:0090406 ! pollen tube +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0090407 ! organophosphate biosynthetic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process @@ -58169,6 +58181,10 @@ is_a: GO:0042493 {is_inferred="true"} ! response to drug [Term] +id: GO:0097386 ! glial cell projection +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0097403 ! cellular response to raffinose is_a: GO:0071322 {is_inferred="true"} ! cellular response to carbohydrate stimulus is_a: GO:1901545 {is_inferred="true"} ! response to raffinose @@ -58253,6 +58269,10 @@ is_a: GO:1903441 {is_inferred="true"} ! protein localization to ciliary membrane [Term] +id: GO:0097511 ! dendritic cell dendrite +is_a: GO:0120025 {is_inferred="true"} ! plasma membrane bounded cell projection + +[Term] id: GO:0097516 ! microvillar actin bundle is_a: GO:0098859 {is_inferred="true"} ! actin filament bundle of actin-based cell projection @@ -61003,6 +61023,10 @@ is_a: GO:0017046 {is_inferred="true"} ! peptide hormone binding [Term] +id: GO:0120025 ! plasma membrane bounded cell projection +is_a: GO:0042995 {is_inferred="true"} ! cell projection + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39811) +++ go_inferences.obo (working copy) @@ -76911,6 +76911,7 @@ [Term] id: GO:1903211 ! mitotic recombination involved in replication fork processing is_a: GO:0006312 {is_inferred="true"} ! mitotic recombination +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:1903212 ! protein localization to mating-type region heterochromatin @@ -76962,7 +76963,7 @@ [Term] id: GO:1903221 ! regulation of mitotic recombination involved in replication fork processing is_a: GO:0000019 {is_inferred="true"} ! regulation of mitotic recombination -is_a: GO:0090329 {is_inferred="true"} ! regulation of DNA-dependent DNA replication +is_a: GO:1903463 {is_inferred="true"} ! regulation of mitotic cell cycle DNA replication [Term] id: GO:1903222 ! quinolinic acid transmembrane transport @@ -90645,6 +90646,10 @@ is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part [Term] +id: GO:1990426 ! mitotic recombination-dependent replication fork processing +is_a: GO:1990505 {is_inferred="true"} ! mitotic DNA replication maintenance of fidelity + +[Term] id: GO:1990427 ! stereocilia tip-link density is_a: GO:0097458 {is_inferred="true"} ! neuron part ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39688) +++ go_inferences.obo (working copy) @@ -43957,6 +43957,10 @@ is_a: GO:0051421 {is_inferred="true"} ! regulation of endo-1,4-beta-xylanase activity [Term] +id: GO:0051424 ! corticotropin-releasing hormone binding +is_a: GO:0017046 {is_inferred="true"} ! peptide hormone binding + +[Term] id: GO:0051436 ! negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle is_a: GO:0051439 {is_inferred="true"} ! regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39687) +++ go_inferences.obo (working copy) @@ -60991,6 +60991,14 @@ is_a: GO:0120015 {is_inferred="true"} ! intermembrane sterol transfer activity [Term] +id: GO:0120022 ! glucagon binding +is_a: GO:0017046 {is_inferred="true"} ! peptide hormone binding + +[Term] +id: GO:0120023 ! somatostatin binding +is_a: GO:0017046 {is_inferred="true"} ! peptide hormone binding + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39686) +++ go_inferences.obo (working copy) @@ -60938,6 +60938,59 @@ is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation [Term] +id: GO:0120010 ! intermembrane phospholipid transfer +is_a: GO:0015914 {is_inferred="true"} ! phospholipid transport +is_a: GO:0120009 {is_inferred="true"} ! intermembrane lipid transfer + +[Term] +id: GO:0120011 ! intermembrane sterol transfer +is_a: GO:0015918 {is_inferred="true"} ! sterol transport +is_a: GO:0120009 {is_inferred="true"} ! intermembrane lipid transfer + +[Term] +id: GO:0120012 ! intermembrane sphingolipid transfer +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0120009 {is_inferred="true"} ! intermembrane lipid transfer + +[Term] +id: GO:0120014 ! intermembrane phospholipid transfer activity +is_a: GO:0005548 {is_inferred="true"} ! phospholipid transporter activity +is_a: GO:0120013 {is_inferred="true"} ! intermembrane lipid transfer activity + +[Term] +id: GO:0120015 ! intermembrane sterol transfer activity +is_a: GO:0015248 {is_inferred="true"} ! sterol transporter activity + +[Term] +id: GO:0120016 ! intermembrane sphingolipid transfer activity +is_a: GO:0046624 {is_inferred="true"} ! sphingolipid transporter activity +is_a: GO:0120013 {is_inferred="true"} ! intermembrane lipid transfer activity + +[Term] +id: GO:0120017 ! intermembrane ceramide transfer activity +is_a: GO:0035620 {is_inferred="true"} ! ceramide transporter activity +is_a: GO:0120016 {is_inferred="true"} ! intermembrane sphingolipid transfer activity + +[Term] +id: GO:0120018 ! intermembrane phosphotidylinositol transfer activity +is_a: GO:0008526 {is_inferred="true"} ! phosphatidylinositol transporter activity +is_a: GO:0120014 {is_inferred="true"} ! intermembrane phospholipid transfer activity + +[Term] +id: GO:0120019 ! intermembrane phosphotidylcholine transfer activity +is_a: GO:0008525 {is_inferred="true"} ! phosphatidylcholine transporter activity +is_a: GO:0120014 {is_inferred="true"} ! intermembrane phospholipid transfer activity + +[Term] +id: GO:0120020 ! intermembrane cholesterol transfer activity +is_a: GO:0017127 {is_inferred="true"} ! cholesterol transporter activity +is_a: GO:0120015 {is_inferred="true"} ! intermembrane sterol transfer activity + +[Term] +id: GO:0120021 ! intermembrane oxysterol transfer activity +is_a: GO:0120015 {is_inferred="true"} ! intermembrane sterol transfer activity + +[Term] id: GO:0140009 ! L-aspartate import across plasma membrane is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39529) +++ go_inferences.obo (working copy) @@ -60920,6 +60920,10 @@ is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process [Term] +id: GO:0106002 ! mCRD-mediated mRNA stability complex +is_a: GO:0044445 {is_inferred="true"} ! cytosolic part + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39526) +++ go_inferences.obo (working copy) @@ -1794,10 +1794,6 @@ is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding [Term] -id: GO:0001951 ! intestinal D-glucose absorption -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] id: GO:0001952 ! regulation of cell-matrix adhesion is_a: GO:0010810 {is_inferred="true"} ! regulation of cell-substrate adhesion @@ -12221,6 +12217,10 @@ is_a: GO:0010665 {is_inferred="true"} ! regulation of cardiac muscle cell apoptotic process [Term] +id: GO:0010674 ! negative regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle +is_a: GO:0051038 {is_inferred="true"} ! negative regulation of transcription involved in meiotic cell cycle + +[Term] id: GO:0010678 ! negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated is_a: GO:0010677 {is_inferred="true"} ! negative regulation of cellular carbohydrate metabolic process is_a: GO:0045892 {is_inferred="true"} ! negative regulation of transcription, DNA-templated @@ -48786,6 +48786,7 @@ [Term] id: GO:0061454 ! Golgi calcium ion export +is_a: GO:0061856 {is_inferred="true"} ! Golgi calcium ion transmembrane transport is_a: GO:1901660 {is_inferred="true"} ! calcium ion export [Term] @@ -49243,6 +49244,11 @@ is_a: GO:0061853 {is_inferred="true"} ! regulation of neuroblast migration [Term] +id: GO:0061856 ! Golgi calcium ion transmembrane transport +is_a: GO:0032472 {is_inferred="true"} ! Golgi calcium ion transport +is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -60910,6 +60916,10 @@ is_a: GO:0050828 {is_inferred="true"} ! regulation of liquid surface tension [Term] +id: GO:0106001 ! intestinal hexose absorption +is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process + +[Term] id: GO:0120006 ! regulation of glutamatergic neuron differentiation is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation @@ -60924,6 +60934,15 @@ is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation [Term] +id: GO:0140009 ! L-aspartate import across plasma membrane +is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import +is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport + +[Term] +id: GO:0140010 ! D-aspartate transmembrane transporter activity +is_a: GO:0015556 {is_inferred="true"} ! C4-dicarboxylate transmembrane transporter activity + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process @@ -62893,11 +62912,6 @@ is_a: GO:1900393 {is_inferred="true"} ! regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter [Term] -id: GO:1900401 ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter -is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division - -[Term] id: GO:1900402 ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter @@ -63251,16 +63265,6 @@ is_a: GO:0031495 {is_inferred="true"} ! negative regulation of mating type switching [Term] -id: GO:1900475 ! positive regulation of meiosis by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter -is_a: GO:1900401 {is_inferred="true"} ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter - -[Term] -id: GO:1900476 ! positive regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter -is_a: GO:1900401 {is_inferred="true"} ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter - -[Term] id: GO:1900477 ! negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter is_a: GO:2000134 {is_inferred="true"} ! negative regulation of G1/S transition of mitotic cell cycle ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39341) +++ go_inferences.obo (working copy) @@ -49229,6 +49229,20 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] +id: GO:0061853 ! regulation of neuroblast migration +is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration + +[Term] +id: GO:0061854 ! positive regulation of neuroblast migration +is_a: GO:0030335 {is_inferred="true"} ! positive regulation of cell migration +is_a: GO:0061853 {is_inferred="true"} ! regulation of neuroblast migration + +[Term] +id: GO:0061855 ! negative regulation of neuroblast migration +is_a: GO:0030336 {is_inferred="true"} ! negative regulation of cell migration +is_a: GO:0061853 {is_inferred="true"} ! regulation of neuroblast migration + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39337) +++ go_inferences.obo (working copy) @@ -14555,6 +14555,10 @@ is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity [Term] +id: GO:0015440 ! peptide-transporting ATPase activity +is_a: GO:1904680 {is_inferred="true"} ! peptide transmembrane transporter activity + +[Term] id: GO:0015444 ! magnesium-importing ATPase activity is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39197) +++ go_inferences.obo (working copy) @@ -77944,10 +77944,6 @@ is_a: GO:0090335 {is_inferred="true"} ! regulation of brown fat cell differentiation [Term] -id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane -is_a: GO:0032594 {is_inferred="true"} ! protein transport within lipid bilayer - -[Term] id: GO:1903446 ! geraniol metabolic process is_a: GO:0016093 {is_inferred="true"} ! polyprenol metabolic process is_a: GO:0016098 {is_inferred="true"} ! monoterpenoid metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39125) +++ go_inferences.obo (working copy) @@ -60892,6 +60892,20 @@ is_a: GO:0050828 {is_inferred="true"} ! regulation of liquid surface tension [Term] +id: GO:0120006 ! regulation of glutamatergic neuron differentiation +is_a: GO:0045664 {is_inferred="true"} ! regulation of neuron differentiation + +[Term] +id: GO:0120007 ! negative regulation of glutamatergic neuron differentiation +is_a: GO:0045665 {is_inferred="true"} ! negative regulation of neuron differentiation +is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation + +[Term] +id: GO:0120008 ! positive regulation of glutamatergic neuron differentiation +is_a: GO:0045666 {is_inferred="true"} ! positive regulation of neuron differentiation +is_a: GO:0120006 {is_inferred="true"} ! regulation of glutamatergic neuron differentiation + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39119) +++ go_inferences.obo (working copy) @@ -22281,20 +22281,20 @@ is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission [Term] -id: GO:0031630 ! regulation of synaptic vesicle fusion to presynaptic membrane +id: GO:0031630 ! regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:0031338 {is_inferred="true"} ! regulation of vesicle fusion is_a: GO:2000300 {is_inferred="true"} ! regulation of synaptic vesicle exocytosis [Term] -id: GO:0031631 ! negative regulation of synaptic vesicle fusion to presynaptic membrane +id: GO:0031631 ! negative regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:0031339 {is_inferred="true"} ! negative regulation of vesicle fusion -is_a: GO:0031630 {is_inferred="true"} ! regulation of synaptic vesicle fusion to presynaptic membrane +is_a: GO:0031630 {is_inferred="true"} ! regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:2000301 {is_inferred="true"} ! negative regulation of synaptic vesicle exocytosis [Term] -id: GO:0031632 ! positive regulation of synaptic vesicle fusion to presynaptic membrane +id: GO:0031632 ! positive regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:0031340 {is_inferred="true"} ! positive regulation of vesicle fusion -is_a: GO:0031630 {is_inferred="true"} ! regulation of synaptic vesicle fusion to presynaptic membrane +is_a: GO:0031630 {is_inferred="true"} ! regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:2000302 {is_inferred="true"} ! positive regulation of synaptic vesicle exocytosis [Term] @@ -60175,7 +60175,7 @@ [Term] id: GO:0099502 ! calcium-dependent activation of synaptic vesicle fusion -is_a: GO:0031632 {is_inferred="true"} ! positive regulation of synaptic vesicle fusion to presynaptic membrane +is_a: GO:0031632 {is_inferred="true"} ! positive regulation of synaptic vesicle fusion to presynaptic active zone membrane is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission [Term] ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39116) +++ go_inferences.obo (working copy) @@ -7220,7 +7220,6 @@ [Term] id: GO:0006691 ! leukotriene metabolic process is_a: GO:0006690 {is_inferred="true"} ! icosanoid metabolic process -is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process [Term] id: GO:0006692 ! prostanoid metabolic process @@ -17915,7 +17914,6 @@ [Term] id: GO:0019370 ! leukotriene biosynthetic process -is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:0046456 {is_inferred="true"} ! icosanoid biosynthetic process @@ -28236,6 +28234,7 @@ [Term] id: GO:0034695 ! response to prostaglandin E is_a: GO:0034694 {is_inferred="true"} ! response to prostaglandin +is_a: GO:0097305 {is_inferred="true"} ! response to alcohol is_a: GO:1901654 {is_inferred="true"} ! response to ketone [Term] @@ -29932,7 +29931,6 @@ [Term] id: GO:0036100 ! leukotriene catabolic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process -is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process [Term] @@ -29946,6 +29944,7 @@ id: GO:0036102 ! leukotriene B4 metabolic process is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] @@ -52186,6 +52185,7 @@ [Term] id: GO:0071380 ! cellular response to prostaglandin E stimulus +is_a: GO:0097306 {is_inferred="true"} ! cellular response to alcohol is_a: GO:1901655 {is_inferred="true"} ! cellular response to ketone [Term] @@ -52931,7 +52931,6 @@ [Term] id: GO:0071716 ! leukotriene transport -is_a: GO:0015908 {is_inferred="true"} ! fatty acid transport is_a: GO:0071715 {is_inferred="true"} ! icosanoid transport [Term] @@ -57944,6 +57943,7 @@ [Term] id: GO:0097251 ! leukotriene B4 biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process is_a: GO:0036102 {is_inferred="true"} ! leukotriene B4 metabolic process is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process @@ -69808,6 +69808,7 @@ [Term] id: GO:1901748 ! leukotriene D4 metabolic process +is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process @@ -69814,6 +69815,7 @@ [Term] id: GO:1901749 ! leukotriene D4 catabolic process is_a: GO:0036100 {is_inferred="true"} ! leukotriene catabolic process +is_a: GO:0043171 {is_inferred="true"} ! peptide catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:1901748 {is_inferred="true"} ! leukotriene D4 metabolic process @@ -69820,6 +69822,7 @@ [Term] id: GO:1901750 ! leukotriene D4 biosynthetic process is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process +is_a: GO:0043043 {is_inferred="true"} ! peptide biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process is_a: GO:1901748 {is_inferred="true"} ! leukotriene D4 metabolic process @@ -69828,6 +69831,7 @@ is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:0031407 {is_inferred="true"} ! oxylipin metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process is_a: GO:0097176 {is_inferred="true"} ! epoxide metabolic process [Term] @@ -69841,6 +69845,7 @@ [Term] id: GO:1901753 ! leukotriene A4 biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process is_a: GO:0031408 {is_inferred="true"} ! oxylipin biosynthetic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39079) +++ go_inferences.obo (working copy) @@ -58775,6 +58775,10 @@ is_a: GO:0060076 {is_inferred="true"} ! excitatory synapse [Term] +id: GO:0098689 ! latency-replication decision +is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -90104,10 +90108,6 @@ is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus [Term] -id: GO:1990032 ! parallel fiber -is_a: GO:0044302 {is_inferred="true"} ! dentate gyrus mossy fiber - -[Term] id: GO:1990034 ! calcium ion export from cell is_a: GO:1901660 {is_inferred="true"} ! calcium ion export ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39055) +++ go_inferences.obo (working copy) @@ -30761,18 +30761,6 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] -id: GO:0042091 ! interleukin-10 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042094 ! interleukin-2 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042097 ! interleukin-4 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0042101 ! T cell receptor complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -30800,10 +30788,6 @@ is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process [Term] -id: GO:0042109 ! lymphotoxin A biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0042119 ! neutrophil activation is_a: GO:0036230 {is_inferred="true"} ! granulocyte activation @@ -31111,74 +31095,6 @@ is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] -id: GO:0042222 ! interleukin-1 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042223 ! interleukin-3 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042225 ! interleukin-5 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042226 ! interleukin-6 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042227 ! interleukin-7 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042228 ! interleukin-8 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042229 ! interleukin-9 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042230 ! interleukin-11 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042231 ! interleukin-13 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042233 ! interleukin-15 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042234 ! interleukin-16 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042235 ! interleukin-17 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042236 ! interleukin-19 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042237 ! interleukin-20 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042238 ! interleukin-21 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042239 ! interleukin-22 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] -id: GO:0042241 ! interleukin-18 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0042243 ! asexual spore wall assembly is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process @@ -31187,10 +31103,6 @@ is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis [Term] -id: GO:0042253 ! granulocyte macrophage colony-stimulating factor biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0042255 ! ribosome assembly is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly @@ -35410,10 +35322,6 @@ is_a: GO:0034333 {is_inferred="true"} ! adherens junction assembly [Term] -id: GO:0045189 ! connective tissue growth factor biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0045190 ! isotype switching is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -35721,10 +35629,6 @@ is_a: GO:0045346 {is_inferred="true"} ! regulation of MHC class II biosynthetic process [Term] -id: GO:0045350 ! interferon-beta biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0045354 ! regulation of interferon-alpha biosynthetic process is_a: GO:0032647 {is_inferred="true"} ! regulation of interferon-alpha production is_a: GO:0042035 {is_inferred="true"} ! regulation of cytokine biosynthetic process @@ -36254,18 +36158,10 @@ is_a: GO:0019975 {is_inferred="true"} ! interleukin-17 binding [Term] -id: GO:0045524 ! interleukin-24 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0045525 ! interleukin-25 biosynthetic process is_a: GO:0042235 {is_inferred="true"} ! interleukin-17 biosynthetic process [Term] -id: GO:0045526 ! interleukin-26 biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0045528 ! regulation of interleukin-24 biosynthetic process is_a: GO:0032668 {is_inferred="true"} ! regulation of interleukin-24 production is_a: GO:0042035 {is_inferred="true"} ! regulation of cytokine biosynthetic process @@ -41202,10 +41098,6 @@ is_a: GO:0048145 {is_inferred="true"} ! regulation of fibroblast proliferation [Term] -id: GO:0048175 ! hepatocyte growth factor biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0048176 ! regulation of hepatocyte growth factor biosynthetic process is_a: GO:0032646 {is_inferred="true"} ! regulation of hepatocyte growth factor production is_a: GO:0042035 {is_inferred="true"} ! regulation of cytokine biosynthetic process @@ -42616,10 +42508,6 @@ is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process [Term] -id: GO:0050751 ! fractalkine biosynthetic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process - -[Term] id: GO:0050752 ! regulation of fractalkine biosynthetic process is_a: GO:0032644 {is_inferred="true"} ! regulation of fractalkine production is_a: GO:0045073 {is_inferred="true"} ! regulation of chemokine biosynthetic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 39012) +++ go_inferences.obo (working copy) @@ -90184,7 +90184,7 @@ [Term] id: GO:1905962 ! glutamatergic neuron differentiation -is_a: GO:0030154 {is_inferred="true"} ! cell differentiation +is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] id: GO:1905963 ! regulation of protein targeting to plasma membrane ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38983) +++ go_inferences.obo (working copy) @@ -32812,10 +32812,6 @@ is_a: GO:0015159 {is_inferred="true"} ! polysaccharide transmembrane transporter activity [Term] -id: GO:0042964 ! thioredoxin biosynthetic process -is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process - -[Term] id: GO:0042967 ! acyl-carrier-protein biosynthetic process is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38982) +++ go_inferences.obo (working copy) @@ -33165,10 +33165,6 @@ is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] -id: GO:0043172 ! ferredoxin biosynthetic process -is_a: GO:0006124 {is_inferred="true"} ! ferredoxin metabolic process - -[Term] id: GO:0043176 ! amine binding is_a: GO:0005488 {is_inferred="true"} ! binding ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38980) +++ go_inferences.obo (working copy) @@ -32816,10 +32816,6 @@ is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process [Term] -id: GO:0042965 ! glutaredoxin biosynthetic process -is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process - -[Term] id: GO:0042967 ! acyl-carrier-protein biosynthetic process is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process ------------------------------------------------------------------------ r38978 | cjm | 2017-02-24 10:23:11 -0800 (Fri, 24 Feb 2017) | 1 line synced changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38979) +++ go_inferences.obo (working copy) @@ -90199,6 +90199,23 @@ is_a: GO:0030154 {is_inferred="true"} ! cell differentiation [Term] +id: GO:1905963 ! regulation of protein targeting to plasma membrane +is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane +is_a: GO:0090313 {is_inferred="true"} ! regulation of protein targeting to membrane + +[Term] +id: GO:1905964 ! negative regulation of protein targeting to plasma membrane +is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane +is_a: GO:0090315 {is_inferred="true"} ! negative regulation of protein targeting to membrane +is_a: GO:1905963 {is_inferred="true"} ! regulation of protein targeting to plasma membrane + +[Term] +id: GO:1905965 ! positive regulation of protein targeting to plasma membrane +is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane +is_a: GO:0090314 {is_inferred="true"} ! positive regulation of protein targeting to membrane +is_a: GO:1905963 {is_inferred="true"} ! regulation of protein targeting to plasma membrane + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38972 | davidos | 2017-02-23 11:56:02 -0800 (Thu, 23 Feb 2017) | 1 line Added . Also some missing xrefs for BHF & delted some redundany axioms. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38972) +++ go_inferences.obo (working copy) @@ -58895,6 +58895,10 @@ is_a: GO:0044456 {is_inferred="true"} ! synapse part [Term] +id: GO:0098688 ! parallel fiber to Purkinje cell synapse +is_a: GO:0060076 {is_inferred="true"} ! excitatory synapse + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -90207,6 +90211,10 @@ is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus [Term] +id: GO:1990032 ! parallel fiber +is_a: GO:0044302 {is_inferred="true"} ! dentate gyrus mossy fiber + +[Term] id: GO:1990034 ! calcium ion export from cell is_a: GO:1901660 {is_inferred="true"} ! calcium ion export ------------------------------------------------------------------------ r38970 | termgenie | 2017-02-23 10:01:28 -0800 (Thu, 23 Feb 2017) | 2 lines TermGenie commit for user: slaulederkind reviewed by cmungall changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38970) +++ go_inferences.obo (working copy) @@ -90181,9 +90181,20 @@ [Term] id: GO:1905960 ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0045472 {is_inferred="true"} ! response to ether +is_a: GO:1901654 {is_inferred="true"} ! response to ketone [Term] +id: GO:1905961 ! protein-cysteine S-palmitoyltransferase complex +is_a: GO:0002178 {is_inferred="true"} ! palmitoyltransferase complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex + +[Term] +id: GO:1905962 ! glutamatergic neuron differentiation +is_a: GO:0030154 {is_inferred="true"} ! cell differentiation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38954 | tberardi | 2017-02-22 11:06:44 -0800 (Wed, 22 Feb 2017) | 6 lines Fixed bad PMID put in through TG: changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38954) +++ go_inferences.obo (working copy) @@ -10468,19 +10468,19 @@ [Term] id: GO:0009787 ! regulation of abscisic acid-activated signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction -is_a: GO:1901419 {is_inferred="true"} ! regulation of response to alcohol +is_a: GO:1905957 {is_inferred="true"} ! regulation of cellular response to alcohol [Term] id: GO:0009788 ! negative regulation of abscisic acid-activated signaling pathway is_a: GO:0009787 {is_inferred="true"} ! regulation of abscisic acid-activated signaling pathway is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction -is_a: GO:1901420 {is_inferred="true"} ! negative regulation of response to alcohol +is_a: GO:1905958 {is_inferred="true"} ! negative regulation of cellular response to alcohol [Term] id: GO:0009789 ! positive regulation of abscisic acid-activated signaling pathway is_a: GO:0009787 {is_inferred="true"} ! regulation of abscisic acid-activated signaling pathway is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction -is_a: GO:1901421 {is_inferred="true"} ! positive regulation of response to alcohol +is_a: GO:1905959 {is_inferred="true"} ! positive regulation of cellular response to alcohol [Term] id: GO:0009793 ! embryo development ending in seed dormancy @@ -12924,13 +12924,13 @@ [Term] id: GO:0010883 ! regulation of lipid storage -is_a: GO:0032879 {is_inferred="true"} ! regulation of localization is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality +is_a: GO:1905952 {is_inferred="true"} ! regulation of lipid localization [Term] id: GO:0010884 ! positive regulation of lipid storage is_a: GO:0010883 {is_inferred="true"} ! regulation of lipid storage -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905954 {is_inferred="true"} ! positive regulation of lipid localization [Term] id: GO:0010885 ! regulation of cholesterol storage @@ -12949,7 +12949,7 @@ [Term] id: GO:0010888 ! negative regulation of lipid storage is_a: GO:0010883 {is_inferred="true"} ! regulation of lipid storage -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905953 {is_inferred="true"} ! negative regulation of lipid localization [Term] id: GO:0010889 ! regulation of sequestering of triglyceride @@ -23456,6 +23456,18 @@ is_a: GO:0032366 {is_inferred="true"} ! intracellular sterol transport [Term] +id: GO:0032368 ! regulation of lipid transport +is_a: GO:1905952 {is_inferred="true"} ! regulation of lipid localization + +[Term] +id: GO:0032369 ! negative regulation of lipid transport +is_a: GO:1905953 {is_inferred="true"} ! negative regulation of lipid localization + +[Term] +id: GO:0032370 ! positive regulation of lipid transport +is_a: GO:1905954 {is_inferred="true"} ! positive regulation of lipid localization + +[Term] id: GO:0032371 ! regulation of sterol transport is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport @@ -28947,7 +28959,7 @@ [Term] id: GO:0035428 ! hexose transmembrane transport is_a: GO:0008645 {is_inferred="true"} ! hexose transport -is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport +is_a: GO:1905950 {is_inferred="true"} ! monosaccharide transmembrane transport [Term] id: GO:0035429 ! gluconate transmembrane transport @@ -90115,6 +90127,63 @@ is_a: GO:1905664 {is_inferred="true"} ! regulation of calcium ion import across plasma membrane [Term] +id: GO:1905950 ! monosaccharide transmembrane transport +is_a: GO:0015749 {is_inferred="true"} ! monosaccharide transport +is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport + +[Term] +id: GO:1905951 ! mitochondrion DNA recombination +is_a: GO:0006310 {is_inferred="true"} ! DNA recombination +is_a: GO:0032042 {is_inferred="true"} ! mitochondrial DNA metabolic process + +[Term] +id: GO:1905952 ! regulation of lipid localization +is_a: GO:0032879 {is_inferred="true"} ! regulation of localization + +[Term] +id: GO:1905953 ! negative regulation of lipid localization +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905952 {is_inferred="true"} ! regulation of lipid localization + +[Term] +id: GO:1905954 ! positive regulation of lipid localization +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905952 {is_inferred="true"} ! regulation of lipid localization + +[Term] +id: GO:1905955 ! negative regulation of endothelial tube morphogenesis +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1901509 {is_inferred="true"} ! regulation of endothelial tube morphogenesis +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium + +[Term] +id: GO:1905956 ! positive regulation of endothelial tube morphogenesis +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1901509 {is_inferred="true"} ! regulation of endothelial tube morphogenesis +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium + +[Term] +id: GO:1905957 ! regulation of cellular response to alcohol +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process +is_a: GO:1901419 {is_inferred="true"} ! regulation of response to alcohol + +[Term] +id: GO:1905958 ! negative regulation of cellular response to alcohol +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:1901420 {is_inferred="true"} ! negative regulation of response to alcohol +is_a: GO:1905957 {is_inferred="true"} ! regulation of cellular response to alcohol + +[Term] +id: GO:1905959 ! positive regulation of cellular response to alcohol +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:1901421 {is_inferred="true"} ! positive regulation of response to alcohol +is_a: GO:1905957 {is_inferred="true"} ! regulation of cellular response to alcohol + +[Term] +id: GO:1905960 ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one +is_a: GO:0050896 {is_inferred="true"} ! response to stimulus + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38941 | paola | 2017-02-22 02:07:51 -0800 (Wed, 22 Feb 2017) | 3 lines GH Export vs transmembrane export #11784 - closed - edited ‘ferrous iron export’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38941) +++ go_inferences.obo (working copy) @@ -2356,7 +2356,6 @@ [Term] id: GO:0002392 ! platelet activating factor secretion -is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015697 {is_inferred="true"} ! quaternary ammonium group transport is_a: GO:0015914 {is_inferred="true"} ! phospholipid transport @@ -4813,7 +4812,6 @@ is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] id: GO:0005350 ! pyrimidine nucleobase transmembrane transporter activity @@ -4941,7 +4939,6 @@ [Term] id: GO:0005524 ! ATP binding -is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding is_a: GO:0035639 {is_inferred="true"} ! purine ribonucleoside triphosphate binding @@ -5988,7 +5985,6 @@ is_a: GO:0009152 {is_inferred="true"} ! purine ribonucleotide biosynthetic process is_a: GO:0009168 {is_inferred="true"} ! purine ribonucleoside monophosphate biosynthetic process is_a: GO:0046033 {is_inferred="true"} ! AMP metabolic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process [Term] id: GO:0006170 ! dAMP biosynthetic process @@ -6008,7 +6004,6 @@ is_a: GO:0009168 {is_inferred="true"} ! purine ribonucleoside monophosphate biosynthetic process is_a: GO:0009180 {is_inferred="true"} ! purine ribonucleoside diphosphate biosynthetic process is_a: GO:0046031 {is_inferred="true"} ! ADP metabolic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process [Term] id: GO:0006173 ! dADP biosynthetic process @@ -6091,7 +6086,6 @@ is_a: GO:0009154 {is_inferred="true"} ! purine ribonucleotide catabolic process is_a: GO:0009169 {is_inferred="true"} ! purine ribonucleoside monophosphate catabolic process is_a: GO:0046033 {is_inferred="true"} ! AMP metabolic process -is_a: GO:0046130 {is_inferred="true"} ! purine ribonucleoside catabolic process [Term] id: GO:0006198 ! cAMP catabolic process @@ -7449,7 +7443,6 @@ is_a: GO:0009168 {is_inferred="true"} ! purine ribonucleoside monophosphate biosynthetic process is_a: GO:0009206 {is_inferred="true"} ! purine ribonucleoside triphosphate biosynthetic process is_a: GO:0046034 {is_inferred="true"} ! ATP metabolic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process [Term] id: GO:0006760 ! folic acid-containing compound metabolic process @@ -8592,6 +8585,7 @@ [Term] id: GO:0008320 ! protein transmembrane transporter activity is_a: GO:0008565 {is_inferred="true"} ! protein transporter activity +is_a: GO:1904680 {is_inferred="true"} ! peptide transmembrane transporter activity [Term] id: GO:0008324 ! cation transmembrane transporter activity @@ -8724,6 +8718,10 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] +id: GO:0008565 ! protein transporter activity +is_a: GO:0015197 {is_inferred="true"} ! peptide transporter activity + +[Term] id: GO:0008582 ! regulation of synaptic growth at neuromuscular junction is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly @@ -9833,6 +9831,10 @@ is_a: GO:0098781 {is_inferred="true"} ! ncRNA transcription [Term] +id: GO:0009306 ! protein secretion +is_a: GO:0002790 {is_inferred="true"} ! peptide secretion + +[Term] id: GO:0009309 ! amine biosynthetic process is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process @@ -13971,6 +13973,10 @@ is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] +id: GO:0015031 ! protein transport +is_a: GO:0015833 {is_inferred="true"} ! peptide transport + +[Term] id: GO:0015050 ! methane monooxygenase complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex @@ -14078,6 +14084,7 @@ [Term] id: GO:0015143 ! urate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:1901702 {is_inferred="true"} ! salt transmembrane transporter activity [Term] @@ -14272,7 +14279,6 @@ [Term] id: GO:0015199 ! amino-acid betaine transmembrane transporter activity -is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015651 {is_inferred="true"} ! quaternary ammonium group transmembrane transporter activity is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity @@ -14330,7 +14336,6 @@ is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] id: GO:0015218 ! pyrimidine nucleotide transmembrane transporter activity @@ -14787,6 +14792,10 @@ is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] +id: GO:0015651 ! quaternary ammonium group transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity + +[Term] id: GO:0015654 ! tellurite uptake transmembrane transporter activity is_a: GO:0015118 {is_inferred="true"} ! tellurite transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity @@ -14868,8 +14877,7 @@ [Term] id: GO:0015685 ! ferric-enterobactin transport -is_a: GO:0015688 {is_inferred="true"} ! iron chelate transport -is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0042930 {is_inferred="true"} ! enterobactin transport [Term] id: GO:0015686 ! ferric triacetylfusarinine C transport @@ -14877,6 +14885,11 @@ is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] +id: GO:0015687 ! ferric-hydroxamate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport + +[Term] id: GO:0015688 ! iron chelate transport is_a: GO:1901678 {is_inferred="true"} ! iron coordination entity transport @@ -14908,8 +14921,8 @@ [Term] id: GO:0015697 ! quaternary ammonium group transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015698 ! inorganic anion transport @@ -15585,7 +15598,6 @@ [Term] id: GO:0015866 ! ADP transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -15592,7 +15604,6 @@ [Term] id: GO:0015867 ! ATP transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -15636,13 +15647,11 @@ [Term] id: GO:0015879 ! carnitine transport -is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport [Term] id: GO:0015880 ! coenzyme A transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -15702,6 +15711,11 @@ is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] +id: GO:0015894 ! acriflavine transport +is_a: GO:0006821 {is_inferred="true"} ! chloride transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport + +[Term] id: GO:0015895 ! alkane transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport @@ -15815,7 +15829,6 @@ is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0033875 {is_inferred="true"} ! ribonucleoside bisphosphate metabolic process is_a: GO:0034032 {is_inferred="true"} ! purine nucleoside bisphosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0015937 ! coenzyme A biosynthetic process @@ -15823,7 +15836,6 @@ is_a: GO:0015936 {is_inferred="true"} ! coenzyme A metabolic process is_a: GO:0034030 {is_inferred="true"} ! ribonucleoside bisphosphate biosynthetic process is_a: GO:0034033 {is_inferred="true"} ! purine nucleoside bisphosphate biosynthetic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process [Term] id: GO:0015938 ! coenzyme A catabolic process @@ -15831,7 +15843,6 @@ is_a: GO:0015936 {is_inferred="true"} ! coenzyme A metabolic process is_a: GO:0034031 {is_inferred="true"} ! ribonucleoside bisphosphate catabolic process is_a: GO:0034034 {is_inferred="true"} ! purine nucleoside bisphosphate catabolic process -is_a: GO:0046130 {is_inferred="true"} ! purine ribonucleoside catabolic process [Term] id: GO:0015939 ! pantothenate metabolic process @@ -16447,7 +16458,6 @@ [Term] id: GO:0016208 ! AMP binding -is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0043169 {is_inferred="true"} ! cation binding @@ -17077,6 +17087,8 @@ [Term] id: GO:0018923 ! limonene metabolic process is_a: GO:0043692 {is_inferred="true"} ! monoterpene metabolic process +is_a: GO:1900673 {is_inferred="true"} ! olefin metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] id: GO:0018924 ! mandelate metabolic process @@ -17876,7 +17888,6 @@ id: GO:0019361 ! 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process is_a: GO:0009152 {is_inferred="true"} ! purine ribonucleotide biosynthetic process is_a: GO:0009168 {is_inferred="true"} ! purine ribonucleoside monophosphate biosynthetic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process is_a: GO:0046432 {is_inferred="true"} ! 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolic process [Term] @@ -19313,6 +19324,7 @@ [Term] id: GO:0020028 ! hemoglobin import +is_a: GO:0015886 {is_inferred="true"} ! heme transport is_a: GO:0017038 {is_inferred="true"} ! protein import [Term] @@ -19693,10 +19705,6 @@ is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity [Term] -id: GO:0022885 ! bacteriocin transmembrane transporter activity -is_a: GO:1904680 {is_inferred="true"} ! peptide transmembrane transporter activity - -[Term] id: GO:0022889 ! serine transmembrane transporter activity is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity @@ -19922,8 +19930,7 @@ [Term] id: GO:0030170 ! pyridoxal phosphate binding is_a: GO:0043168 {is_inferred="true"} ! anion binding -is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding -is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding +is_a: GO:0070279 {is_inferred="true"} ! vitamin B6 binding [Term] id: GO:0030173 ! integral component of Golgi membrane @@ -21979,7 +21986,6 @@ [Term] id: GO:0031460 ! glycine betaine transport -is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport @@ -22449,7 +22455,7 @@ is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0031919 {is_inferred="true"} ! vitamin B6 transport [Term] id: GO:0031922 ! pyridoxamine transport @@ -22473,6 +22479,8 @@ id: GO:0031926 ! pyridoxal phosphate transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity +is_a: GO:0031924 {is_inferred="true"} ! vitamin B6 transporter activity +is_a: GO:0090482 {is_inferred="true"} ! vitamin transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] @@ -23419,10 +23427,10 @@ [Term] id: GO:0032361 ! pyridoxal phosphate catabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process +is_a: GO:0042820 {is_inferred="true"} ! vitamin B6 catabolic process is_a: GO:0042822 {is_inferred="true"} ! pyridoxal phosphate metabolic process is_a: GO:0046185 {is_inferred="true"} ! aldehyde catabolic process is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process -is_a: GO:0072526 {is_inferred="true"} ! pyridine-containing compound catabolic process is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] @@ -27929,13 +27937,13 @@ is_a: GO:0050748 {is_inferred="true"} ! negative regulation of lipoprotein metabolic process [Term] -id: GO:0034444 ! regulation of plasma lipoprotein particle oxidation +id: GO:0034444 ! regulation of plasma lipoprotein oxidation is_a: GO:0034442 {is_inferred="true"} ! regulation of lipoprotein oxidation [Term] -id: GO:0034445 ! negative regulation of plasma lipoprotein particle oxidation +id: GO:0034445 ! negative regulation of plasma lipoprotein oxidation is_a: GO:0034443 {is_inferred="true"} ! negative regulation of lipoprotein oxidation -is_a: GO:0034444 {is_inferred="true"} ! regulation of plasma lipoprotein particle oxidation +is_a: GO:0034444 {is_inferred="true"} ! regulation of plasma lipoprotein oxidation [Term] id: GO:0034446 ! substrate adhesion-dependent cell spreading @@ -32312,15 +32320,15 @@ is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process -is_a: GO:0072524 {is_inferred="true"} ! pyridine-containing compound metabolic process +is_a: GO:0042816 {is_inferred="true"} ! vitamin B6 metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0042823 ! pyridoxal phosphate biosynthetic process is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process +is_a: GO:0042819 {is_inferred="true"} ! vitamin B6 biosynthetic process is_a: GO:0042822 {is_inferred="true"} ! pyridoxal phosphate metabolic process is_a: GO:0046184 {is_inferred="true"} ! aldehyde biosynthetic process -is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process @@ -33910,7 +33918,6 @@ [Term] id: GO:0043531 ! ADP binding -is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding is_a: GO:0043168 {is_inferred="true"} ! anion binding @@ -34530,10 +34537,6 @@ is_a: GO:0043097 {is_inferred="true"} ! pyrimidine nucleoside salvage [Term] -id: GO:0044209 ! AMP salvage -is_a: GO:0006166 {is_inferred="true"} ! purine ribonucleoside salvage - -[Term] id: GO:0044211 ! CTP salvage is_a: GO:0043097 {is_inferred="true"} ! pyrimidine nucleoside salvage @@ -38073,7 +38076,6 @@ is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process is_a: GO:0009179 {is_inferred="true"} ! purine ribonucleoside diphosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0046032 ! ADP catabolic process @@ -38081,13 +38083,11 @@ is_a: GO:0009169 {is_inferred="true"} ! purine ribonucleoside monophosphate catabolic process is_a: GO:0009181 {is_inferred="true"} ! purine ribonucleoside diphosphate catabolic process is_a: GO:0046031 {is_inferred="true"} ! ADP metabolic process -is_a: GO:0046130 {is_inferred="true"} ! purine ribonucleoside catabolic process [Term] id: GO:0046033 ! AMP metabolic process is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0046034 ! ATP metabolic process @@ -38094,7 +38094,6 @@ is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process is_a: GO:0009205 {is_inferred="true"} ! purine ribonucleoside triphosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0046035 ! CMP metabolic process @@ -39053,11 +39052,14 @@ id: GO:0046250 ! limonene biosynthetic process is_a: GO:0018923 {is_inferred="true"} ! limonene metabolic process is_a: GO:0043693 {is_inferred="true"} ! monoterpene biosynthetic process +is_a: GO:1900674 {is_inferred="true"} ! olefin biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0046251 ! limonene catabolic process is_a: GO:0018923 {is_inferred="true"} ! limonene metabolic process is_a: GO:0043694 {is_inferred="true"} ! monoterpene catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0046252 ! toluene biosynthetic process @@ -39736,7 +39738,6 @@ id: GO:0046432 ! 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolic process is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0046433 ! 2-aminoethylphosphonate metabolic process @@ -40908,7 +40909,6 @@ [Term] id: GO:0046963 ! 3'-phosphoadenosine 5'-phosphosulfate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport @@ -40918,7 +40918,6 @@ is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] @@ -42303,7 +42302,6 @@ is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0034035 {is_inferred="true"} ! purine ribonucleoside bisphosphate metabolic process is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:0050428 ! 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process @@ -42310,7 +42308,6 @@ is_a: GO:0009152 {is_inferred="true"} ! purine ribonucleotide biosynthetic process is_a: GO:0034036 {is_inferred="true"} ! purine ribonucleoside bisphosphate biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process -is_a: GO:0046129 {is_inferred="true"} ! purine ribonucleoside biosynthetic process is_a: GO:0050427 {is_inferred="true"} ! 3'-phosphoadenosine 5'-phosphosulfate metabolic process [Term] @@ -42384,7 +42381,6 @@ [Term] id: GO:0050656 ! 3'-phosphoadenosine 5'-phosphosulfate binding -is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -42504,6 +42500,14 @@ is_a: GO:0050708 {is_inferred="true"} ! regulation of protein secretion [Term] +id: GO:0050708 ! regulation of protein secretion +is_a: GO:0002791 {is_inferred="true"} ! regulation of peptide secretion + +[Term] +id: GO:0050709 ! negative regulation of protein secretion +is_a: GO:0002792 {is_inferred="true"} ! negative regulation of peptide secretion + +[Term] id: GO:0050710 ! negative regulation of cytokine secretion is_a: GO:0001818 {is_inferred="true"} ! negative regulation of cytokine production is_a: GO:0050707 {is_inferred="true"} ! regulation of cytokine secretion @@ -42525,6 +42529,10 @@ is_a: GO:0050711 {is_inferred="true"} ! negative regulation of interleukin-1 secretion [Term] +id: GO:0050714 ! positive regulation of protein secretion +is_a: GO:0002793 {is_inferred="true"} ! positive regulation of peptide secretion + +[Term] id: GO:0050715 ! positive regulation of cytokine secretion is_a: GO:0001819 {is_inferred="true"} ! positive regulation of cytokine production is_a: GO:0050707 {is_inferred="true"} ! regulation of cytokine secretion @@ -43612,6 +43620,10 @@ is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell [Term] +id: GO:0051223 ! regulation of protein transport +is_a: GO:0090087 {is_inferred="true"} ! regulation of peptide transport + +[Term] id: GO:0051228 ! mitotic spindle disassembly is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:0051230 {is_inferred="true"} ! spindle disassembly @@ -49136,6 +49148,7 @@ [Term] id: GO:0061684 ! chaperone-mediated autophagy +is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process [Term] @@ -51147,13 +51160,13 @@ [Term] id: GO:0070926 ! regulation of ATP:ADP antiporter activity -is_a: GO:0032242 {is_inferred="true"} ! regulation of nucleoside transport +is_a: GO:0032239 {is_inferred="true"} ! regulation of nucleobase-containing compound transport is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity is_a: GO:1903959 {is_inferred="true"} ! regulation of anion transmembrane transport [Term] id: GO:0070927 ! negative regulation of ATP:ADP antiporter activity -is_a: GO:0032243 {is_inferred="true"} ! negative regulation of nucleoside transport +is_a: GO:0032240 {is_inferred="true"} ! negative regulation of nucleobase-containing compound transport is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity is_a: GO:0070926 {is_inferred="true"} ! regulation of ATP:ADP antiporter activity is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport @@ -51522,9 +51535,9 @@ [Term] id: GO:0071106 ! adenosine 3',5'-bisphosphate transmembrane transport -is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport [Term] @@ -53384,11 +53397,13 @@ [Term] id: GO:0071938 ! vitamin A transport -is_a: GO:0046865 {is_inferred="true"} ! terpenoid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0034633 {is_inferred="true"} ! retinol transport [Term] id: GO:0071939 ! vitamin A import is_a: GO:0071938 {is_inferred="true"} ! vitamin A transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0071947 ! protein deubiquitination involved in ubiquitin-dependent protein catabolic process @@ -55483,7 +55498,6 @@ [Term] id: GO:0080020 ! regulation of coenzyme A biosynthetic process -is_a: GO:0009118 {is_inferred="true"} ! regulation of nucleoside metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process is_a: GO:1900371 {is_inferred="true"} ! regulation of purine nucleotide biosynthetic process @@ -55614,7 +55628,6 @@ id: GO:0080121 ! AMP transport is_a: GO:0015695 {is_inferred="true"} ! organic cation transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -55624,7 +55637,6 @@ is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity -is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] id: GO:0080126 ! ovary septum development @@ -64020,48 +64032,20 @@ is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] -id: GO:1900603 ! tensidol A metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:1900604 ! tensidol A catabolic process -is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900603 {is_inferred="true"} ! tensidol A metabolic process -is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:1900605 ! tensidol A biosynthetic process -is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:1900603 {is_inferred="true"} ! tensidol A metabolic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] -id: GO:1900606 ! tensidol B metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:1900607 ! tensidol B catabolic process -is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process -is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900606 {is_inferred="true"} ! tensidol B metabolic process -is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:1900608 ! tensidol B biosynthetic process -is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process -is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900606 {is_inferred="true"} ! tensidol B metabolic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:1900609 ! F-9775A metabolic process @@ -64609,41 +64593,29 @@ [Term] id: GO:1900707 ! regulation of tensidol A biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process is_a: GO:1900376 {is_inferred="true"} ! regulation of secondary metabolite biosynthetic process [Term] id: GO:1900708 ! negative regulation of tensidol A biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1900377 {is_inferred="true"} ! negative regulation of secondary metabolite biosynthetic process is_a: GO:1900707 {is_inferred="true"} ! regulation of tensidol A biosynthetic process [Term] id: GO:1900709 ! positive regulation of tensidol A biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1900378 {is_inferred="true"} ! positive regulation of secondary metabolite biosynthetic process is_a: GO:1900707 {is_inferred="true"} ! regulation of tensidol A biosynthetic process [Term] id: GO:1900710 ! regulation of tensidol B biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process is_a: GO:1900376 {is_inferred="true"} ! regulation of secondary metabolite biosynthetic process [Term] id: GO:1900711 ! negative regulation of tensidol B biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1900377 {is_inferred="true"} ! negative regulation of secondary metabolite biosynthetic process is_a: GO:1900710 {is_inferred="true"} ! regulation of tensidol B biosynthetic process [Term] id: GO:1900712 ! positive regulation of tensidol B biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1900378 {is_inferred="true"} ! positive regulation of secondary metabolite biosynthetic process is_a: GO:1900710 {is_inferred="true"} ! regulation of tensidol B biosynthetic process @@ -64839,7 +64811,6 @@ [Term] id: GO:1900751 ! 4-(trimethylammonio)butanoate transport -is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport [Term] @@ -64924,17 +64895,29 @@ [Term] id: GO:1900767 ! fonsecin metabolic process +is_a: GO:0006066 {is_inferred="true"} ! alcohol metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process is_a: GO:1900785 {is_inferred="true"} ! naphtho-gamma-pyrone metabolic process [Term] id: GO:1900768 ! fonsecin catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process +is_a: GO:0030640 {is_inferred="true"} ! polyketide catabolic process +is_a: GO:0046164 {is_inferred="true"} ! alcohol catabolic process is_a: GO:1900767 {is_inferred="true"} ! fonsecin metabolic process is_a: GO:1900786 {is_inferred="true"} ! naphtho-gamma-pyrone catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process [Term] id: GO:1900769 ! fonsecin biosynthetic process +is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process +is_a: GO:0046165 {is_inferred="true"} ! alcohol biosynthetic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1900767 {is_inferred="true"} ! fonsecin metabolic process is_a: GO:1900787 {is_inferred="true"} ! naphtho-gamma-pyrone biosynthetic process +is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process [Term] id: GO:1900770 ! fumitremorgin B metabolic process @@ -67454,7 +67437,6 @@ [Term] id: GO:1901236 ! 4-(trimethylammonio)butanoate transmembrane transporter activity -is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015651 {is_inferred="true"} ! quaternary ammonium group transmembrane transporter activity [Term] @@ -69198,7 +69180,9 @@ [Term] id: GO:1901598 ! (-)-pinoresinol metabolic process is_a: GO:0009806 {is_inferred="true"} ! lignan metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process [Term] @@ -69206,6 +69190,7 @@ is_a: GO:0009807 {is_inferred="true"} ! lignan biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process is_a: GO:1901598 {is_inferred="true"} ! (-)-pinoresinol metabolic process [Term] @@ -69681,7 +69666,8 @@ [Term] id: GO:1901702 ! salt transmembrane transporter activity -is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity +is_a: GO:0008509 {is_inferred="true"} ! anion transmembrane transporter activity [Term] id: GO:1901703 ! protein localization involved in auxin polar transport @@ -70806,13 +70792,11 @@ id: GO:1901910 ! adenosine 5'-(hexahydrogen pentaphosphate) metabolic process is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process -is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] id: GO:1901911 ! adenosine 5'-(hexahydrogen pentaphosphate) catabolic process is_a: GO:0009154 {is_inferred="true"} ! purine ribonucleotide catabolic process is_a: GO:0009169 {is_inferred="true"} ! purine ribonucleoside monophosphate catabolic process -is_a: GO:0046130 {is_inferred="true"} ! purine ribonucleoside catabolic process is_a: GO:1901910 {is_inferred="true"} ! adenosine 5'-(hexahydrogen pentaphosphate) metabolic process [Term] @@ -71872,12 +71856,15 @@ is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0046273 {is_inferred="true"} ! lignan catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process is_a: GO:1901598 {is_inferred="true"} ! (-)-pinoresinol metabolic process [Term] id: GO:1902124 ! (+)-pinoresinol metabolic process is_a: GO:0009806 {is_inferred="true"} ! lignan metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process [Term] @@ -71885,6 +71872,7 @@ is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0046273 {is_inferred="true"} ! lignan catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process is_a: GO:1902124 {is_inferred="true"} ! (+)-pinoresinol metabolic process [Term] @@ -71892,6 +71880,7 @@ is_a: GO:0009807 {is_inferred="true"} ! lignan biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process is_a: GO:1902124 {is_inferred="true"} ! (+)-pinoresinol metabolic process [Term] @@ -73916,23 +73905,22 @@ is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] id: GO:1902558 ! 5'-adenylyl sulfate transmembrane transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport [Term] id: GO:1902559 ! 3'-phospho-5'-adenylyl sulfate transmembrane transport -is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport is_a: GO:0046963 {is_inferred="true"} ! 3'-phosphoadenosine 5'-phosphosulfate transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport @@ -74199,7 +74187,7 @@ [Term] id: GO:1902616 ! acyl carnitine transmembrane transport is_a: GO:0006844 {is_inferred="true"} ! acyl carnitine transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0072488 {is_inferred="true"} ! ammonium transmembrane transport [Term] id: GO:1902617 ! response to fluoride @@ -78652,18 +78640,15 @@ [Term] id: GO:1903578 ! regulation of ATP metabolic process -is_a: GO:0009118 {is_inferred="true"} ! regulation of nucleoside metabolic process is_a: GO:1900542 {is_inferred="true"} ! regulation of purine nucleotide metabolic process [Term] id: GO:1903579 ! negative regulation of ATP metabolic process -is_a: GO:0045978 {is_inferred="true"} ! negative regulation of nucleoside metabolic process is_a: GO:1900543 {is_inferred="true"} ! negative regulation of purine nucleotide metabolic process is_a: GO:1903578 {is_inferred="true"} ! regulation of ATP metabolic process [Term] id: GO:1903580 ! positive regulation of ATP metabolic process -is_a: GO:0045979 {is_inferred="true"} ! positive regulation of nucleoside metabolic process is_a: GO:1900544 {is_inferred="true"} ! positive regulation of purine nucleotide metabolic process is_a: GO:1903578 {is_inferred="true"} ! regulation of ATP metabolic process @@ -80636,7 +80621,7 @@ is_a: GO:1904478 {is_inferred="true"} ! regulation of intestinal absorption [Term] -id: GO:1903988 ! ferrous iron export +id: GO:1903988 ! ferrous iron export across plasma membrane is_a: GO:0070839 {is_inferred="true"} ! divalent metal ion export is_a: GO:1903414 {is_inferred="true"} ! iron cation export @@ -84144,11 +84129,13 @@ [Term] id: GO:1904714 ! regulation of chaperone-mediated autophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process [Term] id: GO:1904715 ! negative regulation of chaperone-mediated autophagy is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0034249 {is_inferred="true"} ! negative regulation of cellular amide metabolic process is_a: GO:0042177 {is_inferred="true"} ! negative regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy @@ -84155,6 +84142,7 @@ [Term] id: GO:1904716 ! positive regulation of chaperone-mediated autophagy is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0034250 {is_inferred="true"} ! positive regulation of cellular amide metabolic process is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy @@ -90702,7 +90690,7 @@ [Term] id: GO:1990544 ! mitochondrial ATP transmembrane transport -is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport +is_a: GO:0072530 {is_inferred="true"} ! purine-containing compound transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport ------------------------------------------------------------------------ r38920 | mcourtot | 2017-02-20 01:04:16 -0800 (Mon, 20 Feb 2017) | 1 line plant related TCs and pollination as per https://github.com/geneontology/go-ontology/issues/11313#issuecomment-280715396 changes in entailments ------------------------------------------------------------------------ r38880 | termgenie | 2017-02-17 09:58:02 -0800 (Fri, 17 Feb 2017) | 2 lines TermGenie commit for user: bmeldal reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38880) +++ go_inferences.obo (working copy) @@ -90120,6 +90120,13 @@ is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity [Term] +id: GO:1905949 ! negative regulation of calcium ion import across plasma membrane +is_a: GO:0010523 {is_inferred="true"} ! negative regulation of calcium ion transport into cytosol +is_a: GO:0090281 {is_inferred="true"} ! negative regulation of calcium ion import +is_a: GO:1903170 {is_inferred="true"} ! negative regulation of calcium ion transmembrane transport +is_a: GO:1905664 {is_inferred="true"} ! regulation of calcium ion import across plasma membrane + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38878 | mcourtot | 2017-02-17 07:10:52 -0800 (Fri, 17 Feb 2017) | 1 line added id: GO:1905948 back which was not in gene_ontology_write.obo but was in validated file changes in entailments ------------------------------------------------------------------------ r38870 | paola | 2017-02-17 05:04:26 -0800 (Fri, 17 Feb 2017) | 3 lines GH NTR: children of cell pole #12007 - closed - edited defs of old/new cell pole terms changes in entailments ------------------------------------------------------------------------ r38863 | termgenie | 2017-02-16 09:36:59 -0800 (Thu, 16 Feb 2017) | 2 lines TermGenie commit for user: hattrill reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38863) +++ go_inferences.obo (working copy) @@ -90113,6 +90113,13 @@ is_a: GO:1905945 {is_inferred="true"} ! regulation of response to calcium ion [Term] +id: GO:1905948 ! 3',5'-cyclic GMP transmembrane-transporting ATPase activity +is_a: GO:0001409 {is_inferred="true"} ! guanine nucleotide transmembrane transporter activity +is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38856 | paola | 2017-02-16 03:26:31 -0800 (Thu, 16 Feb 2017) | 3 lines GH OBS: GO:0022405 ! hair cycle process and GO:0022404 ! molting cycle process #11123 - closed - see ticket for details changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38856) +++ go_inferences.obo (working copy) @@ -44919,16 +44919,16 @@ is_a: GO:0051791 {is_inferred="true"} ! medium-chain fatty acid metabolic process [Term] -id: GO:0051794 ! regulation of catagen +id: GO:0051794 ! regulation of timing of catagen is_a: GO:0048819 {is_inferred="true"} ! regulation of hair follicle maturation [Term] -id: GO:0051795 ! positive regulation of catagen -is_a: GO:0051794 {is_inferred="true"} ! regulation of catagen +id: GO:0051795 ! positive regulation of timing of catagen +is_a: GO:0051794 {is_inferred="true"} ! regulation of timing of catagen [Term] -id: GO:0051796 ! negative regulation of catagen -is_a: GO:0051794 {is_inferred="true"} ! regulation of catagen +id: GO:0051796 ! negative regulation of timing of catagen +is_a: GO:0051794 {is_inferred="true"} ! regulation of timing of catagen [Term] id: GO:0051797 ! regulation of hair follicle development @@ -45019,28 +45019,28 @@ is_a: GO:0051899 {is_inferred="true"} ! membrane depolarization [Term] -id: GO:0051884 ! regulation of anagen +id: GO:0051884 ! regulation of timing of anagen is_a: GO:0048819 {is_inferred="true"} ! regulation of hair follicle maturation [Term] -id: GO:0051885 ! positive regulation of anagen -is_a: GO:0051884 {is_inferred="true"} ! regulation of anagen +id: GO:0051885 ! positive regulation of timing of anagen +is_a: GO:0051884 {is_inferred="true"} ! regulation of timing of anagen [Term] -id: GO:0051886 ! negative regulation of anagen -is_a: GO:0051884 {is_inferred="true"} ! regulation of anagen +id: GO:0051886 ! negative regulation of timing of anagen +is_a: GO:0051884 {is_inferred="true"} ! regulation of timing of anagen [Term] -id: GO:0051887 ! regulation of exogen +id: GO:0051887 ! regulation of timing of exogen is_a: GO:0048819 {is_inferred="true"} ! regulation of hair follicle maturation [Term] -id: GO:0051888 ! positive regulation of exogen -is_a: GO:0051887 {is_inferred="true"} ! regulation of exogen +id: GO:0051888 ! positive regulation of timing of exogen +is_a: GO:0051887 {is_inferred="true"} ! regulation of timing of exogen [Term] -id: GO:0051889 ! negative regulation of exogen -is_a: GO:0051887 {is_inferred="true"} ! regulation of exogen +id: GO:0051889 ! negative regulation of timing of exogen +is_a: GO:0051887 {is_inferred="true"} ! regulation of timing of exogen [Term] id: GO:0051890 ! regulation of cardioblast differentiation ------------------------------------------------------------------------ r38854 | paola | 2017-02-16 00:17:16 -0800 (Thu, 16 Feb 2017) | 2 lines GH sympathetic neuron projection extension/guidance #10445 - closed - added logical def to ‘sympathetic neuron axon guidance’ changes in entailments ------------------------------------------------------------------------ r38765 | mcourtot | 2017-02-15 04:56:48 -0800 (Wed, 15 Feb 2017) | 1 line updated transcription antitermination definition to site(s) as per https://github.com/geneontology/go-ontology/issues/12178 changes in entailments ------------------------------------------------------------------------ r38760 | dph | 2017-02-14 09:34:24 -0800 (Tue, 14 Feb 2017) | 2 lines Tweaked the definition of chaperone-mediated autophagy and added a clause to the logical definition that it has an input of a protein. changes in entailments ------------------------------------------------------------------------ r38758 | mcourtot | 2017-02-14 06:32:40 -0800 (Tue, 14 Feb 2017) | 1 line fixed namespace changes in entailments ------------------------------------------------------------------------ r38746 | tberardi | 2017-02-13 16:17:14 -0800 (Mon, 13 Feb 2017) | 1 line GH13019 missing parent to GO:0090539 peptide pheromone export by transmembrane transport - closed changes in entailments ------------------------------------------------------------------------ r38746 | tberardi | 2017-02-13 16:17:14 -0800 (Mon, 13 Feb 2017) | 1 line GH13019 missing parent to GO:0090539 peptide pheromone export by transmembrane transport - closed changes in entailments ------------------------------------------------------------------------ r38744 | tberardi | 2017-02-13 16:08:18 -0800 (Mon, 13 Feb 2017) | 1 line GH12984 new term Telomere maintenance via telomere trimming - closed again changes in entailments ------------------------------------------------------------------------ r38742 | dph | 2017-02-13 06:39:18 -0800 (Mon, 13 Feb 2017) | 2 lines Added some logical defs for the differentiation in phenotypic switching terms that hopefully clarifies them and allows for good inference. GH13010-closed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38742) +++ go_inferences.obo (working copy) @@ -57725,6 +57725,10 @@ is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] +id: GO:0090679 ! cell differentiation involved in phenotypic switching +is_a: GO:0030154 {is_inferred="true"} ! cell differentiation + +[Term] id: GO:0090688 ! cleavage furrow rim is_a: GO:0032155 {is_inferred="true"} ! cell division site part @@ -87567,6 +87571,7 @@ [Term] id: GO:1905420 ! vascular smooth muscle cell differentiation involved in phenotypic switching is_a: GO:0035886 {is_inferred="true"} ! vascular smooth muscle cell differentiation +is_a: GO:0090679 {is_inferred="true"} ! cell differentiation involved in phenotypic switching [Term] id: GO:1905421 ! regulation of plant organ morphogenesis @@ -90008,19 +90013,19 @@ [Term] id: GO:1905930 ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching -is_a: GO:1900239 {is_inferred="true"} ! regulation of phenotypic switching is_a: GO:1905063 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation +is_a: GO:1905915 {is_inferred="true"} ! regulation of cell differentiation involved in phenotypic switching [Term] id: GO:1905931 ! negative regulation of vascular smooth muscle cell differentiation involved in phenotypic switching -is_a: GO:1900240 {is_inferred="true"} ! negative regulation of phenotypic switching is_a: GO:1905064 {is_inferred="true"} ! negative regulation of vascular smooth muscle cell differentiation +is_a: GO:1905916 {is_inferred="true"} ! negative regulation of cell differentiation involved in phenotypic switching is_a: GO:1905930 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching [Term] id: GO:1905932 ! positive regulation of vascular smooth muscle cell differentiation involved in phenotypic switching -is_a: GO:1900241 {is_inferred="true"} ! positive regulation of phenotypic switching is_a: GO:1905065 {is_inferred="true"} ! positive regulation of vascular smooth muscle cell differentiation +is_a: GO:1905917 {is_inferred="true"} ! positive regulation of cell differentiation involved in phenotypic switching is_a: GO:1905930 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching [Term] ------------------------------------------------------------------------ r38740 | termgenie | 2017-02-13 06:11:05 -0800 (Mon, 13 Feb 2017) | 4 lines TermGenie commit for user: BarbaraCzub reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38740) +++ go_inferences.obo (working copy) @@ -89930,6 +89930,23 @@ is_a: GO:1905912 {is_inferred="true"} ! regulation of calcium ion export from cell [Term] +id: GO:1905915 ! regulation of cell differentiation involved in phenotypic switching +is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:1900239 {is_inferred="true"} ! regulation of phenotypic switching + +[Term] +id: GO:1905916 ! negative regulation of cell differentiation involved in phenotypic switching +is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:1900240 {is_inferred="true"} ! negative regulation of phenotypic switching +is_a: GO:1905915 {is_inferred="true"} ! regulation of cell differentiation involved in phenotypic switching + +[Term] +id: GO:1905917 ! positive regulation of cell differentiation involved in phenotypic switching +is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:1900241 {is_inferred="true"} ! positive regulation of phenotypic switching +is_a: GO:1905915 {is_inferred="true"} ! regulation of cell differentiation involved in phenotypic switching + +[Term] id: GO:1905918 ! regulation of CoA-transferase activity is_a: GO:0051338 {is_inferred="true"} ! regulation of transferase activity @@ -89990,6 +90007,23 @@ is_a: GO:1905927 {is_inferred="true"} ! regulation of invadopodium disassembly [Term] +id: GO:1905930 ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching +is_a: GO:1900239 {is_inferred="true"} ! regulation of phenotypic switching +is_a: GO:1905063 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation + +[Term] +id: GO:1905931 ! negative regulation of vascular smooth muscle cell differentiation involved in phenotypic switching +is_a: GO:1900240 {is_inferred="true"} ! negative regulation of phenotypic switching +is_a: GO:1905064 {is_inferred="true"} ! negative regulation of vascular smooth muscle cell differentiation +is_a: GO:1905930 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching + +[Term] +id: GO:1905932 ! positive regulation of vascular smooth muscle cell differentiation involved in phenotypic switching +is_a: GO:1900241 {is_inferred="true"} ! positive regulation of phenotypic switching +is_a: GO:1905065 {is_inferred="true"} ! positive regulation of vascular smooth muscle cell differentiation +is_a: GO:1905930 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation involved in phenotypic switching + +[Term] id: GO:1905933 ! regulation of cell fate determination is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment @@ -90004,6 +90038,76 @@ is_a: GO:1905933 {is_inferred="true"} ! regulation of cell fate determination [Term] +id: GO:1905936 ! regulation of germ cell proliferation +is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process +is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process + +[Term] +id: GO:1905937 ! negative regulation of germ cell proliferation +is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905936 {is_inferred="true"} ! regulation of germ cell proliferation +is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process + +[Term] +id: GO:1905938 ! positive regulation of germ cell proliferation +is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905936 {is_inferred="true"} ! regulation of germ cell proliferation +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process + +[Term] +id: GO:1905939 ! regulation of gonad development +is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process + +[Term] +id: GO:1905940 ! negative regulation of gonad development +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905939 {is_inferred="true"} ! regulation of gonad development +is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process + +[Term] +id: GO:1905941 ! positive regulation of gonad development +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905939 {is_inferred="true"} ! regulation of gonad development +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process + +[Term] +id: GO:1905942 ! regulation of formation of growth cone in injured axon +is_a: GO:0048686 {is_inferred="true"} ! regulation of sprouting of injured axon + +[Term] +id: GO:1905943 ! negative regulation of formation of growth cone in injured axon +is_a: GO:0048688 {is_inferred="true"} ! negative regulation of sprouting of injured axon +is_a: GO:1905942 {is_inferred="true"} ! regulation of formation of growth cone in injured axon + +[Term] +id: GO:1905944 ! positive regulation of formation of growth cone in injured axon +is_a: GO:0048687 {is_inferred="true"} ! positive regulation of sprouting of injured axon +is_a: GO:1905942 {is_inferred="true"} ! regulation of formation of growth cone in injured axon + +[Term] +id: GO:1905945 ! regulation of response to calcium ion +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus + +[Term] +id: GO:1905946 ! negative regulation of response to calcium ion +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905945 {is_inferred="true"} ! regulation of response to calcium ion + +[Term] +id: GO:1905947 ! positive regulation of response to calcium ion +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905945 {is_inferred="true"} ! regulation of response to calcium ion + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -91129,22 +91233,17 @@ [Term] id: GO:2000018 ! regulation of male gonad development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905939 {is_inferred="true"} ! regulation of gonad development [Term] id: GO:2000019 ! negative regulation of male gonad development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905940 {is_inferred="true"} ! negative regulation of gonad development is_a: GO:2000018 {is_inferred="true"} ! regulation of male gonad development -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:2000020 ! positive regulation of male gonad development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905941 {is_inferred="true"} ! positive regulation of gonad development is_a: GO:2000018 {is_inferred="true"} ! regulation of male gonad development -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] id: GO:2000022 ! regulation of jasmonic acid mediated signaling pathway @@ -91968,6 +92067,18 @@ is_a: GO:2000191 {is_inferred="true"} ! regulation of fatty acid transport [Term] +id: GO:2000194 ! regulation of female gonad development +is_a: GO:1905939 {is_inferred="true"} ! regulation of gonad development + +[Term] +id: GO:2000195 ! negative regulation of female gonad development +is_a: GO:1905940 {is_inferred="true"} ! negative regulation of gonad development + +[Term] +id: GO:2000196 ! positive regulation of female gonad development +is_a: GO:1905941 {is_inferred="true"} ! positive regulation of gonad development + +[Term] id: GO:2000197 ! regulation of ribonucleoprotein complex localization is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization @@ -92240,23 +92351,16 @@ [Term] id: GO:2000254 ! regulation of male germ cell proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905936 {is_inferred="true"} ! regulation of germ cell proliferation [Term] id: GO:2000255 ! negative regulation of male germ cell proliferation -is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905937 {is_inferred="true"} ! negative regulation of germ cell proliferation is_a: GO:2000254 {is_inferred="true"} ! regulation of male germ cell proliferation [Term] id: GO:2000256 ! positive regulation of male germ cell proliferation -is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905938 {is_inferred="true"} ! positive regulation of germ cell proliferation is_a: GO:2000254 {is_inferred="true"} ! regulation of male germ cell proliferation [Term] ------------------------------------------------------------------------ r38733 | paola | 2017-02-13 04:02:06 -0800 (Mon, 13 Feb 2017) | 2 lines Fixed typo in def. comment of 'axoneme' changes in entailments ------------------------------------------------------------------------ r38699 | tberardi | 2017-02-10 15:20:27 -0800 (Fri, 10 Feb 2017) | 1 line GH12886 TPV protein import into nucleus, docking - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38699) +++ go_inferences.obo (working copy) @@ -1650,7 +1650,7 @@ [Term] id: GO:0001893 ! maternal placenta development -is_a: GO:0048608 {is_inferred="true"} ! reproductive structure development +is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction [Term] id: GO:0001898 ! regulation of cytolysis by symbiont of host cells @@ -4104,18 +4104,10 @@ is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] -id: GO:0003157 ! endocardium development -is_a: GO:0003158 {is_inferred="true"} ! endothelium development - -[Term] id: GO:0003158 ! endothelium development is_a: GO:0060429 {is_inferred="true"} ! epithelium development [Term] -id: GO:0003160 ! endocardium morphogenesis -is_a: GO:0003159 {is_inferred="true"} ! morphogenesis of an endothelium - -[Term] id: GO:0003161 ! cardiac conduction system development is_a: GO:0048738 {is_inferred="true"} ! cardiac muscle tissue development @@ -21010,6 +21002,10 @@ is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis [Term] +id: GO:0030916 ! otic vesicle formation +is_a: GO:0072175 {is_inferred="true"} ! epithelial tube formation + +[Term] id: GO:0030932 ! amyloplast ADPG pyrophosphorylase complex is_a: GO:0031009 {is_inferred="true"} ! plastid ADPG pyrophosphorylase complex @@ -52785,11 +52781,12 @@ [Term] id: GO:0071599 ! otic vesicle development +is_a: GO:0035295 {is_inferred="true"} ! tube development is_a: GO:0060429 {is_inferred="true"} ! epithelium development [Term] id: GO:0071600 ! otic vesicle morphogenesis -is_a: GO:0002009 {is_inferred="true"} ! morphogenesis of an epithelium +is_a: GO:0060562 {is_inferred="true"} ! epithelial tube morphogenesis [Term] id: GO:0071602 ! phytosphingosine biosynthetic process @@ -97827,10 +97824,6 @@ is_a: CHEBI:36080 {is_inferred="true"} ! protein [Term] -id: PR:000007499 ! fibroblast growth factor 8 -is_a: CHEBI:36080 {is_inferred="true"} ! protein - -[Term] id: PR:000007555 ! filamin-A is_a: CHEBI:36080 {is_inferred="true"} ! protein @@ -97847,10 +97840,6 @@ is_a: CHEBI:36080 {is_inferred="true"} ! protein [Term] -id: PR:000007636 ! forkhead box protein N1 -is_a: CHEBI:36080 {is_inferred="true"} ! protein - -[Term] id: PR:000007806 ! galanin is_a: CHEBI:36080 {is_inferred="true"} ! protein @@ -98079,18 +98068,10 @@ is_a: CHEBI:36080 {is_inferred="true"} ! protein [Term] -id: PR:000014841 ! sonic hedgehog protein -is_a: CHEBI:36080 {is_inferred="true"} ! protein - -[Term] id: PR:000015288 ! smoothened is_a: CHEBI:36080 {is_inferred="true"} ! protein [Term] -id: PR:000015557 ! spondin-1 -is_a: CHEBI:36080 {is_inferred="true"} ! protein - -[Term] id: PR:000015794 ! syntaxin-2 is_a: CHEBI:36080 {is_inferred="true"} ! protein @@ -98219,38 +98200,10 @@ is_a: CHEBI:33699 {is_inferred="true"} ! messenger RNA [Term] -id: UBERON:0001289 ! descending limb of loop of Henle -is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium - -[Term] id: UBERON:0003261 ! thyroid primordium endoderm is_a: UBERON:0004119 {is_inferred="true"} ! endoderm-derived structure [Term] -id: UBERON:0004134 ! proximal tubule -is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium - -[Term] -id: UBERON:0004136 ! intermediate tubule -is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium - -[Term] -id: UBERON:0005130 ! metanephric loop of Henle -is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium - -[Term] -id: UBERON:0005164 ! ascending limb of loop of Henle -is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium - -[Term] -id: UBERON:0005421 ! pectoral appendage apical ectodermal ridge -is_a: UBERON:0004121 {is_inferred="true"} ! ectoderm-derived structure - -[Term] -id: UBERON:0005422 ! pelvic appendage apical ectodermal ridge -is_a: UBERON:0004121 {is_inferred="true"} ! ectoderm-derived structure - -[Term] id: UBERON:0005721 ! pronephric mesoderm is_a: UBERON:0004120 {is_inferred="true"} ! mesoderm-derived structure ------------------------------------------------------------------------ r38694 | dph | 2017-02-10 10:45:21 -0800 (Fri, 10 Feb 2017) | 2 lines Asserted chemical classifications for estrogen and androgen. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38694) +++ go_inferences.obo (working copy) @@ -8505,6 +8505,14 @@ is_a: GO:0008207 {is_inferred="true"} ! C21-steroid hormone metabolic process [Term] +id: GO:0008209 ! androgen metabolic process +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] +id: GO:0008210 ! estrogen metabolic process +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0008215 ! spermine metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process @@ -81040,14 +81048,17 @@ [Term] id: GO:1904076 ! regulation of estrogen biosynthetic process is_a: GO:0046885 {is_inferred="true"} ! regulation of hormone biosynthetic process +is_a: GO:0050810 {is_inferred="true"} ! regulation of steroid biosynthetic process [Term] id: GO:1904077 ! negative regulation of estrogen biosynthetic process +is_a: GO:0010894 {is_inferred="true"} ! negative regulation of steroid biosynthetic process is_a: GO:0032353 {is_inferred="true"} ! negative regulation of hormone biosynthetic process is_a: GO:1904076 {is_inferred="true"} ! regulation of estrogen biosynthetic process [Term] id: GO:1904078 ! positive regulation of estrogen biosynthetic process +is_a: GO:0010893 {is_inferred="true"} ! positive regulation of steroid biosynthetic process is_a: GO:0046886 {is_inferred="true"} ! positive regulation of hormone biosynthetic process is_a: GO:1904076 {is_inferred="true"} ! regulation of estrogen biosynthetic process @@ -91894,6 +91905,7 @@ [Term] id: GO:2000180 ! negative regulation of androgen biosynthetic process +is_a: GO:0010894 {is_inferred="true"} ! negative regulation of steroid biosynthetic process is_a: GO:0032353 {is_inferred="true"} ! negative regulation of hormone biosynthetic process [Term] ------------------------------------------------------------------------ r38692 | dph | 2017-02-10 10:19:37 -0800 (Fri, 10 Feb 2017) | 2 lines Fixed bad PMID. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38692) +++ go_inferences.obo (working copy) @@ -49310,6 +49310,17 @@ is_a: GO:0061847 {is_inferred="true"} ! response to cholecystokinin [Term] +id: GO:0061850 ! growth cone leading edge +is_a: GO:0031252 {is_inferred="true"} ! cell leading edge +is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0097458 {is_inferred="true"} ! neuron part + +[Term] +id: GO:0061851 ! leading edge of lamellipodium +is_a: GO:0031252 {is_inferred="true"} ! cell leading edge +is_a: GO:0044463 {is_inferred="true"} ! cell projection part + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38689 | dph | 2017-02-10 08:40:51 -0800 (Fri, 10 Feb 2017) | 2 lines Lots of edits to the ERAD pathway and associated terms. GH12912-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38689) +++ go_inferences.obo (working copy) @@ -58275,7 +58275,7 @@ is_a: GO:0098659 {is_inferred="true"} ! inorganic cation import into cell [Term] -id: GO:0097466 ! glycoprotein ERAD pathway +id: GO:0097466 ! ubiquitin-dependent glycoprotein ERAD pathway is_a: GO:1904587 {is_inferred="true"} ! response to glycoprotein [Term] ------------------------------------------------------------------------ r38687 | dph | 2017-02-10 04:15:23 -0800 (Fri, 10 Feb 2017) | 2 lines GH1300-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38687) +++ go_inferences.obo (working copy) @@ -22144,6 +22144,7 @@ [Term] id: GO:0031569 ! G2 cell size control checkpoint +is_a: GO:0010972 {is_inferred="true"} ! negative regulation of G2/M transition of mitotic cell cycle is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint [Term] ------------------------------------------------------------------------ r38682 | tberardi | 2017-02-09 17:23:33 -0800 (Thu, 09 Feb 2017) | 1 line GH12991 mRNA metabolism parent? - closed again changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38682) +++ go_inferences.obo (working copy) @@ -48094,6 +48094,7 @@ [Term] id: GO:0061013 ! regulation of mRNA catabolic process +is_a: GO:0010468 {is_inferred="true"} ! regulation of gene expression is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process is_a: GO:1903311 {is_inferred="true"} ! regulation of mRNA metabolic process @@ -73074,6 +73075,7 @@ [Term] id: GO:1902373 ! negative regulation of mRNA catabolic process +is_a: GO:0010628 {is_inferred="true"} ! positive regulation of gene expression is_a: GO:0061013 {is_inferred="true"} ! regulation of mRNA catabolic process is_a: GO:1902369 {is_inferred="true"} ! negative regulation of RNA catabolic process is_a: GO:1903312 {is_inferred="true"} ! negative regulation of mRNA metabolic process ------------------------------------------------------------------------ r38673 | paola | 2017-02-09 07:49:30 -0800 (Thu, 09 Feb 2017) | 3 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress changes in entailments ------------------------------------------------------------------------ r38668 | dph | 2017-02-09 06:05:30 -0800 (Thu, 09 Feb 2017) | 2 lines GH13005-closed changes in entailments ------------------------------------------------------------------------ r38668 | dph | 2017-02-09 06:05:30 -0800 (Thu, 09 Feb 2017) | 2 lines GH13005-closed changes in entailments ------------------------------------------------------------------------ r38666 | dph | 2017-02-09 05:38:07 -0800 (Thu, 09 Feb 2017) | 2 lines GH13007-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38666) +++ go_inferences.obo (working copy) @@ -49319,6 +49319,10 @@ is_a: GO:0044456 {is_inferred="true"} ! synapse part [Term] +id: GO:0061848 ! cellular response to cholecystokinin +is_a: GO:0061847 {is_inferred="true"} ! response to cholecystokinin + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38664 | termgenie | 2017-02-09 04:17:44 -0800 (Thu, 09 Feb 2017) | 4 lines TermGenie commit for user: bmeldal reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38664) +++ go_inferences.obo (working copy) @@ -41455,20 +41455,20 @@ [Term] id: GO:0048334 ! regulation of mesodermal cell fate determination -is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation +is_a: GO:1905933 {is_inferred="true"} ! regulation of cell fate determination [Term] id: GO:0048335 ! negative regulation of mesodermal cell fate determination -is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0048334 {is_inferred="true"} ! regulation of mesodermal cell fate determination is_a: GO:1905771 {is_inferred="true"} ! negative regulation of mesodermal cell differentiation +is_a: GO:1905934 {is_inferred="true"} ! negative regulation of cell fate determination [Term] id: GO:0048336 ! positive regulation of mesodermal cell fate determination -is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:0048334 {is_inferred="true"} ! regulation of mesodermal cell fate determination is_a: GO:1905772 {is_inferred="true"} ! positive regulation of mesodermal cell differentiation +is_a: GO:1905935 {is_inferred="true"} ! positive regulation of cell fate determination [Term] id: GO:0048337 ! positive regulation of mesodermal cell fate specification @@ -84472,18 +84472,18 @@ [Term] id: GO:1904785 ! regulation of asymmetric protein localization involved in cell fate determination -is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment is_a: GO:0032880 {is_inferred="true"} ! regulation of protein localization +is_a: GO:1905933 {is_inferred="true"} ! regulation of cell fate determination [Term] id: GO:1904786 ! negative regulation of asymmetric protein localization involved in cell fate determination -is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:1904785 {is_inferred="true"} ! regulation of asymmetric protein localization involved in cell fate determination +is_a: GO:1905934 {is_inferred="true"} ! negative regulation of cell fate determination [Term] id: GO:1904787 ! positive regulation of asymmetric protein localization involved in cell fate determination -is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:1904785 {is_inferred="true"} ! regulation of asymmetric protein localization involved in cell fate determination +is_a: GO:1905935 {is_inferred="true"} ! positive regulation of cell fate determination [Term] id: GO:1904788 ! positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter @@ -89919,6 +89919,80 @@ is_a: GO:1905912 {is_inferred="true"} ! regulation of calcium ion export from cell [Term] +id: GO:1905918 ! regulation of CoA-transferase activity +is_a: GO:0051338 {is_inferred="true"} ! regulation of transferase activity + +[Term] +id: GO:1905919 ! negative regulation of CoA-transferase activity +is_a: GO:0051348 {is_inferred="true"} ! negative regulation of transferase activity +is_a: GO:1905918 {is_inferred="true"} ! regulation of CoA-transferase activity + +[Term] +id: GO:1905920 ! positive regulation of CoA-transferase activity +is_a: GO:0051347 {is_inferred="true"} ! positive regulation of transferase activity +is_a: GO:1905918 {is_inferred="true"} ! regulation of CoA-transferase activity + +[Term] +id: GO:1905921 ! regulation of acetylcholine biosynthetic process +is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0060408 {is_inferred="true"} ! regulation of acetylcholine metabolic process + +[Term] +id: GO:1905922 ! negative regulation of acetylcholine biosynthetic process +is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0060410 {is_inferred="true"} ! negative regulation of acetylcholine metabolic process +is_a: GO:1905921 {is_inferred="true"} ! regulation of acetylcholine biosynthetic process + +[Term] +id: GO:1905923 ! positive regulation of acetylcholine biosynthetic process +is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process +is_a: GO:0060409 {is_inferred="true"} ! positive regulation of acetylcholine metabolic process +is_a: GO:1905921 {is_inferred="true"} ! regulation of acetylcholine biosynthetic process + +[Term] +id: GO:1905924 ! regulation of invadopodium assembly +is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly + +[Term] +id: GO:1905925 ! negative regulation of invadopodium assembly +is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:1905924 {is_inferred="true"} ! regulation of invadopodium assembly + +[Term] +id: GO:1905926 ! positive regulation of invadopodium assembly +is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:1905924 {is_inferred="true"} ! regulation of invadopodium assembly + +[Term] +id: GO:1905927 ! regulation of invadopodium disassembly +is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization + +[Term] +id: GO:1905928 ! negative regulation of invadopodium disassembly +is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:1905927 {is_inferred="true"} ! regulation of invadopodium disassembly + +[Term] +id: GO:1905929 ! positive regulation of invadopodium disassembly +is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:1905927 {is_inferred="true"} ! regulation of invadopodium disassembly + +[Term] +id: GO:1905933 ! regulation of cell fate determination +is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment + +[Term] +id: GO:1905934 ! negative regulation of cell fate determination +is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment +is_a: GO:1905933 {is_inferred="true"} ! regulation of cell fate determination + +[Term] +id: GO:1905935 ! positive regulation of cell fate determination +is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment +is_a: GO:1905933 {is_inferred="true"} ! regulation of cell fate determination + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38658 | hjd | 2017-02-08 14:07:47 -0800 (Wed, 08 Feb 2017) | 2 lines retyped in def by hand changes in entailments ------------------------------------------------------------------------ r38653 | davidos | 2017-02-08 08:54:09 -0800 (Wed, 08 Feb 2017) | 1 line More global change of pattern for regulation of biological process. Diff is pretty huge. Expecting new inferences to result (although none happened in last commit!) see https://github.com/geneontology/go-ontology/issues/13006. changes in entailments ------------------------------------------------------------------------ r38651 | davidos | 2017-02-08 08:24:29 -0800 (Wed, 08 Feb 2017) | 1 line Global change of pattern for regulation of biological process. Diff is pretty huge. Expecting new inferences to result. see https://github.com/geneontology/go-ontology/issues/13006. changes in entailments ------------------------------------------------------------------------ r38649 | paola | 2017-02-08 07:40:13 -0800 (Wed, 08 Feb 2017) | 2 lines GH NTR: vasodilation by nitric oxide #12253 - more work changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38649) +++ go_inferences.obo (working copy) @@ -37689,6 +37689,7 @@ [Term] id: GO:0045906 ! negative regulation of vasoconstriction is_a: GO:0019229 {is_inferred="true"} ! regulation of vasoconstriction +is_a: GO:0097755 {is_inferred="true"} ! positive regulation of blood vessel diameter is_a: GO:1903523 {is_inferred="true"} ! negative regulation of blood circulation [Term] ------------------------------------------------------------------------ r38647 | paola | 2017-02-08 07:15:06 -0800 (Wed, 08 Feb 2017) | 2 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38647) +++ go_inferences.obo (working copy) @@ -88689,25 +88689,6 @@ is_a: GO:1905654 {is_inferred="true"} ! regulation of artery smooth muscle contraction [Term] -id: GO:1905657 ! regulation of relaxation of vascular smooth muscle -is_a: GO:0006940 {is_inferred="true"} ! regulation of smooth muscle contraction -is_a: GO:0042312 {is_inferred="true"} ! regulation of vasodilation -is_a: GO:1901080 {is_inferred="true"} ! regulation of relaxation of smooth muscle - -[Term] -id: GO:1905658 ! negative regulation of relaxation of vascular smooth muscle -is_a: GO:0045908 {is_inferred="true"} ! negative regulation of vasodilation -is_a: GO:0045987 {is_inferred="true"} ! positive regulation of smooth muscle contraction -is_a: GO:1901081 {is_inferred="true"} ! negative regulation of relaxation of smooth muscle -is_a: GO:1905657 {is_inferred="true"} ! regulation of relaxation of vascular smooth muscle - -[Term] -id: GO:1905659 ! positive regulation of relaxation of vascular smooth muscle -is_a: GO:0045909 {is_inferred="true"} ! positive regulation of vasodilation -is_a: GO:1901082 {is_inferred="true"} ! positive regulation of relaxation of smooth muscle -is_a: GO:1905657 {is_inferred="true"} ! regulation of relaxation of vascular smooth muscle - -[Term] id: GO:1905660 ! mitotic checkpoint complex assembly is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly ------------------------------------------------------------------------ r38643 | paola | 2017-02-08 06:45:10 -0800 (Wed, 08 Feb 2017) | 2 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress changes in entailments ------------------------------------------------------------------------ r38641 | mcourtot | 2017-02-08 06:06:44 -0800 (Wed, 08 Feb 2017) | 1 line modified lactation. Closes #12382 changes in entailments ------------------------------------------------------------------------ r38635 | paola | 2017-02-08 02:42:32 -0800 (Wed, 08 Feb 2017) | 2 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38635) +++ go_inferences.obo (working copy) @@ -34817,7 +34817,7 @@ is_a: GO:1902562 {is_inferred="true"} ! H4 histone acetyltransferase complex [Term] -id: GO:0044552 ! modulation of vasodilation in other organism +id: GO:0044552 ! vasodilation in other organism is_a: GO:0044706 {is_inferred="true"} ! multi-multicellular organism process [Term] ------------------------------------------------------------------------ r38632 | tberardi | 2017-02-07 17:03:47 -0800 (Tue, 07 Feb 2017) | 1 line GH12984 new term Telomere maintenance via telomere trimming - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38632) +++ go_inferences.obo (working copy) @@ -82730,6 +82730,7 @@ [Term] id: GO:1904429 ! regulation of t-circle formation is_a: GO:0032204 {is_inferred="true"} ! regulation of telomere maintenance +is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis [Term] id: GO:1904430 ! negative regulation of t-circle formation @@ -82739,6 +82740,7 @@ [Term] id: GO:1904431 ! positive regulation of t-circle formation is_a: GO:0032206 {is_inferred="true"} ! positive regulation of telomere maintenance +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:1904429 {is_inferred="true"} ! regulation of t-circle formation [Term] ------------------------------------------------------------------------ r38630 | tberardi | 2017-02-07 11:41:43 -0800 (Tue, 07 Feb 2017) | 1 line GH12980 NTR: replication fork processing at tRNA genes - closed changes in entailments ------------------------------------------------------------------------ r38628 | termgenie | 2017-02-07 07:44:26 -0800 (Tue, 07 Feb 2017) | 4 lines TermGenie commit for user: rachhuntley reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38628) +++ go_inferences.obo (working copy) @@ -89907,6 +89907,34 @@ is_a: GO:1905906 {is_inferred="true"} ! regulation of amyloid fibril formation [Term] +id: GO:1905909 ! regulation of dauer entry +is_a: GO:0061065 {is_inferred="true"} ! regulation of dauer larval development + +[Term] +id: GO:1905910 ! negative regulation of dauer entry +is_a: GO:0061067 {is_inferred="true"} ! negative regulation of dauer larval development +is_a: GO:1905909 {is_inferred="true"} ! regulation of dauer entry + +[Term] +id: GO:1905911 ! positive regulation of dauer entry +is_a: GO:0061066 {is_inferred="true"} ! positive regulation of dauer larval development +is_a: GO:1905909 {is_inferred="true"} ! regulation of dauer entry + +[Term] +id: GO:1905912 ! regulation of calcium ion export from cell +is_a: GO:0051924 {is_inferred="true"} ! regulation of calcium ion transport + +[Term] +id: GO:1905913 ! negative regulation of calcium ion export from cell +is_a: GO:0051926 {is_inferred="true"} ! negative regulation of calcium ion transport +is_a: GO:1905912 {is_inferred="true"} ! regulation of calcium ion export from cell + +[Term] +id: GO:1905914 ! positive regulation of calcium ion export from cell +is_a: GO:0051928 {is_inferred="true"} ! positive regulation of calcium ion transport +is_a: GO:1905912 {is_inferred="true"} ! regulation of calcium ion export from cell + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38625 | hjd | 2017-02-07 07:31:01 -0800 (Tue, 07 Feb 2017) | 2 lines drat that punctuation changes in entailments ------------------------------------------------------------------------ r38612 | tberardi | 2017-02-06 17:38:46 -0800 (Mon, 06 Feb 2017) | 1 line GH12990 Creation of MATH domain binding and addition of synonym - closed changes in entailments ------------------------------------------------------------------------ r38609 | tberardi | 2017-02-06 17:02:55 -0800 (Mon, 06 Feb 2017) | 1 line GH12991 mRNA metabolism parent? - closed changes in entailments ------------------------------------------------------------------------ r38608 | tberardi | 2017-02-06 16:57:33 -0800 (Mon, 06 Feb 2017) | 1 line GH12987 NTR DNA repair complex assembly - closed changes in entailments ------------------------------------------------------------------------ r38602 | davidos | 2017-02-06 06:00:17 -0800 (Mon, 06 Feb 2017) | 1 line fixed error linking pr ribbon synapse to compound eye pr changes in entailments ------------------------------------------------------------------------ r38600 | dph | 2017-02-06 05:46:14 -0800 (Mon, 06 Feb 2017) | 2 lines Relaxed taxon constriction for ovulation cycle process. GH12997-closed changes in entailments ------------------------------------------------------------------------ r38598 | mcourtot | 2017-02-06 05:35:55 -0800 (Mon, 06 Feb 2017) | 1 line closes #12533, redefine GO:0061487, DNA replication initiation from late origin, logically adding a restriction 'has participant some late origin'. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38598) +++ go_inferences.obo (working copy) @@ -48955,6 +48955,10 @@ is_a: GO:0042493 {is_inferred="true"} ! response to drug [Term] +id: GO:0061487 ! DNA replication initiation from late origin +is_a: GO:0006270 {is_inferred="true"} ! DNA replication initiation + +[Term] id: GO:0061488 ! adenine import into cell is_a: GO:0015853 {is_inferred="true"} ! adenine transport is_a: GO:0098657 {is_inferred="true"} ! import into cell ------------------------------------------------------------------------ r38596 | dph | 2017-02-06 05:26:10 -0800 (Mon, 06 Feb 2017) | 2 lines GH12865-closed. Removed regulation of immune and defense response parents from organism interaction terms. changes in entailments ------------------------------------------------------------------------ r38594 | dph | 2017-02-06 05:17:22 -0800 (Mon, 06 Feb 2017) | 2 lines Made autophagy and children types of catabolic processes. Also removed several asserted parents since they are now inferred by the reasoner. GH12943-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38594) +++ go_inferences.obo (working copy) @@ -699,6 +699,26 @@ is_a: GO:0031062 {is_inferred="true"} ! positive regulation of histone methylation [Term] +id: GO:0000422 ! mitophagy +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process + +[Term] +id: GO:0000423 ! macromitophagy +is_a: GO:0000422 {is_inferred="true"} ! mitophagy + +[Term] +id: GO:0000424 ! microautophagy of mitochondrion +is_a: GO:0000422 {is_inferred="true"} ! mitophagy + +[Term] +id: GO:0000425 ! macropexophagy +is_a: GO:0030242 {is_inferred="true"} ! pexophagy + +[Term] +id: GO:0000426 ! micropexophagy +is_a: GO:0030242 {is_inferred="true"} ! pexophagy + +[Term] id: GO:0000427 ! plastid-encoded plastid RNA polymerase complex is_a: GO:0000428 {is_inferred="true"} ! DNA-directed RNA polymerase complex is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -11676,17 +11696,17 @@ [Term] id: GO:0010506 ! regulation of autophagy -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process +is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process [Term] id: GO:0010507 ! negative regulation of autophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process [Term] id: GO:0010508 ! positive regulation of autophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process [Term] id: GO:0010509 ! polyamine homeostasis @@ -28210,6 +28230,10 @@ is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] +id: GO:0034727 ! piecemeal microautophagy of nucleus +is_a: GO:0044804 {is_inferred="true"} ! nucleophagy + +[Term] id: GO:0034728 ! nucleosome organization is_a: GO:0071824 {is_inferred="true"} ! protein-DNA complex subunit organization @@ -49115,6 +49139,10 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] +id: GO:0061684 ! chaperone-mediated autophagy +is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process + +[Term] id: GO:0061704 ! glycolytic process from sucrose is_a: GO:0005987 {is_inferred="true"} ! sucrose catabolic process @@ -49129,6 +49157,10 @@ is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] +id: GO:0061709 ! reticulophagy +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process + +[Term] id: GO:0061716 ! miRNA export from nucleus is_a: GO:1990428 {is_inferred="true"} ! miRNA transport @@ -49163,6 +49195,10 @@ is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] +id: GO:0061723 ! glycophagy +is_a: GO:0005980 {is_inferred="true"} ! glycogen catabolic process + +[Term] id: GO:0061726 ! mitochondrion disassembly is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization @@ -83065,13 +83101,11 @@ [Term] id: GO:1904502 ! regulation of lipophagy is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy -is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process [Term] id: GO:1904503 ! negative regulation of lipophagy is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy -is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process is_a: GO:1904502 {is_inferred="true"} ! regulation of lipophagy @@ -83078,7 +83112,6 @@ [Term] id: GO:1904504 ! positive regulation of lipophagy is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy -is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process is_a: GO:0050996 {is_inferred="true"} ! positive regulation of lipid catabolic process is_a: GO:1904502 {is_inferred="true"} ! regulation of lipophagy @@ -84089,15 +84122,18 @@ [Term] id: GO:1904714 ! regulation of chaperone-mediated autophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy +is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process [Term] id: GO:1904715 ! negative regulation of chaperone-mediated autophagy is_a: GO:0010507 {is_inferred="true"} ! negative regulation of autophagy +is_a: GO:0042177 {is_inferred="true"} ! negative regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy [Term] id: GO:1904716 ! positive regulation of chaperone-mediated autophagy is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy +is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process is_a: GO:1904714 {is_inferred="true"} ! regulation of chaperone-mediated autophagy [Term] ------------------------------------------------------------------------ r38589 | davidos | 2017-02-05 14:06:32 -0800 (Sun, 05 Feb 2017) | 1 line Added synapses as described in geneontology/synapse/issues/109. Also fixed #11218. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38589) +++ go_inferences.obo (working copy) @@ -3256,6 +3256,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0002920 {is_inferred="true"} ! regulation of humoral immune response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:0002760 ! positive regulation of antimicrobial humoral response @@ -3263,6 +3264,7 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0002922 {is_inferred="true"} ! positive regulation of humoral immune response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process [Term] id: GO:0002761 ! regulation of myeloid leukocyte differentiation @@ -8601,6 +8603,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0002921 {is_inferred="true"} ! negative regulation of humoral immune response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process [Term] id: GO:0008354 ! germ cell migration @@ -10163,7 +10166,7 @@ is_a: GO:0098543 {is_inferred="true"} ! detection of other organism [Term] -id: GO:0009616 ! virus induced gene silencing +id: GO:0009615 ! response to virus is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] @@ -11024,6 +11027,7 @@ id: GO:0010112 ! regulation of systemic acquired resistance is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process is_a: GO:0045088 {is_inferred="true"} ! regulation of innate immune response [Term] @@ -11031,6 +11035,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0010112 {is_inferred="true"} ! regulation of systemic acquired resistance is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response [Term] @@ -22338,6 +22343,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:0031665 ! negative regulation of lipopolysaccharide-mediated signaling pathway @@ -22345,6 +22351,7 @@ is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction is_a: GO:0031664 {is_inferred="true"} ! regulation of lipopolysaccharide-mediated signaling pathway is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process [Term] id: GO:0031666 ! positive regulation of lipopolysaccharide-mediated signaling pathway @@ -22352,6 +22359,7 @@ is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction is_a: GO:0031664 {is_inferred="true"} ! regulation of lipopolysaccharide-mediated signaling pathway is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process [Term] id: GO:0031670 ! cellular response to nutrient @@ -29632,7 +29640,7 @@ [Term] id: GO:0035947 ! regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter is_a: GO:0006111 {is_inferred="true"} ! regulation of gluconeogenesis -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:0035948 ! positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter @@ -29682,7 +29690,7 @@ [Term] id: GO:0035956 ! regulation of starch catabolic process by regulation of transcription from RNA polymerase II promoter -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0098679 {is_inferred="true"} ! regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter is_a: GO:2000881 {is_inferred="true"} ! regulation of starch catabolic process [Term] @@ -29694,6 +29702,7 @@ [Term] id: GO:0035958 ! regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter is_a: GO:0072364 {is_inferred="true"} ! regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter +is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter is_a: GO:2000874 {is_inferred="true"} ! regulation of glyoxylate cycle [Term] @@ -42443,6 +42452,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process is_a: GO:0050688 {is_inferred="true"} ! regulation of defense response to virus [Term] @@ -42451,6 +42461,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:0050696 ! trichloroethylene catabolic process @@ -54010,7 +54021,7 @@ [Term] id: GO:0072361 ! regulation of glycolytic process by regulation of transcription from RNA polymerase II promoter is_a: GO:0006110 {is_inferred="true"} ! regulation of glycolytic process -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0098679 {is_inferred="true"} ! regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:0072362 ! regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter @@ -57367,6 +57378,11 @@ is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential [Term] +id: GO:0090401 ! viral-induced premature senescence +is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process + +[Term] id: GO:0090407 ! organophosphate biosynthetic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process @@ -58442,6 +58458,7 @@ id: GO:0098522 ! neuromuscular junction of skeletal muscle fiber is_a: GO:0098520 {is_inferred="true"} ! excitatory neuromuscular junction is_a: GO:0098523 {is_inferred="true"} ! neuromuscular junction of myotube +is_a: GO:0098981 {is_inferred="true"} ! cholinergic synapse [Term] id: GO:0098523 ! neuromuscular junction of myotube @@ -58793,6 +58810,15 @@ is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] +id: GO:0098679 ! regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter +is_a: GO:0043470 {is_inferred="true"} ! regulation of carbohydrate catabolic process +is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter + +[Term] +id: GO:0098682 ! arciform density +is_a: GO:0044456 {is_inferred="true"} ! synapse part + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -61626,6 +61652,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1900151 ! regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay @@ -62080,6 +62107,7 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039533 {is_inferred="true"} ! regulation of MDA-5 signaling pathway +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -62089,6 +62117,7 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -62693,6 +62722,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:2000068 {is_inferred="true"} ! regulation of defense response to insect [Term] @@ -62700,6 +62730,7 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:2000068 {is_inferred="true"} ! regulation of defense response to insect [Term] @@ -62744,6 +62775,7 @@ id: GO:1900375 ! positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter is_a: GO:1900090 {is_inferred="true"} ! positive regulation of inositol biosynthetic process +is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900376 ! regulation of secondary metabolite biosynthetic process @@ -62969,6 +63001,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1900425 ! negative regulation of defense response to bacterium @@ -62975,6 +63008,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1900424 {is_inferred="true"} ! regulation of defense response to bacterium [Term] @@ -62982,6 +63016,7 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1900424 {is_inferred="true"} ! regulation of defense response to bacterium [Term] @@ -63206,6 +63241,7 @@ is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter is_a: GO:0010678 {is_inferred="true"} ! negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated is_a: GO:1900089 {is_inferred="true"} ! negative regulation of inositol biosynthetic process +is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900472 ! positive regulation of phosphatidylcholine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter @@ -69455,6 +69491,7 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0010112 {is_inferred="true"} ! regulation of systemic acquired resistance is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response [Term] @@ -72612,6 +72649,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1902289 ! negative regulation of defense response to oomycetes @@ -72618,6 +72656,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1902288 {is_inferred="true"} ! regulation of defense response to oomycetes [Term] @@ -72625,6 +72664,7 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1902288 {is_inferred="true"} ! regulation of defense response to oomycetes [Term] @@ -82574,6 +82614,7 @@ is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1904416 ! negative regulation of xenophagy @@ -82581,6 +82622,7 @@ is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1904415 {is_inferred="true"} ! regulation of xenophagy [Term] @@ -82589,6 +82631,7 @@ is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1904415 {is_inferred="true"} ! regulation of xenophagy [Term] @@ -85615,6 +85658,7 @@ id: GO:1905035 ! negative regulation of antifungal innate immune response is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response is_a: GO:1905034 {is_inferred="true"} ! regulation of antifungal innate immune response @@ -85622,6 +85666,7 @@ id: GO:1905036 ! positive regulation of antifungal innate immune response is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response is_a: GO:1905034 {is_inferred="true"} ! regulation of antifungal innate immune response @@ -91182,6 +91227,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:2000069 ! regulation of post-embryonic root development ------------------------------------------------------------------------ r38574 | tberardi | 2017-02-03 17:42:01 -0800 (Fri, 03 Feb 2017) | 1 line GH12986 NTR site of DNA damage - closed changes in entailments ------------------------------------------------------------------------ r38572 | tberardi | 2017-02-03 17:20:51 -0800 (Fri, 03 Feb 2017) | 1 line GH12994 add F-P link for molecular function regulator - closed changes in entailments ------------------------------------------------------------------------ r38570 | hjd | 2017-02-03 13:01:10 -0800 (Fri, 03 Feb 2017) | 2 lines removed term with duplicate name changes in entailments ------------------------------------------------------------------------ r38567 | termgenie | 2017-02-03 09:24:17 -0800 (Fri, 03 Feb 2017) | 4 lines TermGenie commit for user: BarbaraCzub reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38567) +++ go_inferences.obo (working copy) @@ -89091,23 +89091,20 @@ [Term] id: GO:1905770 ! regulation of mesodermal cell differentiation -is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development +is_a: GO:1905902 {is_inferred="true"} ! regulation of mesoderm formation [Term] id: GO:1905771 ! negative regulation of mesodermal cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation -is_a: GO:2000381 {is_inferred="true"} ! negative regulation of mesoderm development -is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation +is_a: GO:1905903 {is_inferred="true"} ! negative regulation of mesoderm formation [Term] id: GO:1905772 ! positive regulation of mesodermal cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation -is_a: GO:2000382 {is_inferred="true"} ! positive regulation of mesoderm development -is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation +is_a: GO:1905904 {is_inferred="true"} ! positive regulation of mesoderm formation [Term] id: GO:1905774 ! regulation of DNA helicase activity @@ -89787,6 +89784,44 @@ is_a: GO:1905899 {is_inferred="true"} ! regulation of smooth muscle tissue development [Term] +id: GO:1905902 ! regulation of mesoderm formation +is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation +is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development + +[Term] +id: GO:1905903 ! negative regulation of mesoderm formation +is_a: GO:1905902 {is_inferred="true"} ! regulation of mesoderm formation +is_a: GO:2000381 {is_inferred="true"} ! negative regulation of mesoderm development +is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation + +[Term] +id: GO:1905904 ! positive regulation of mesoderm formation +is_a: GO:1905902 {is_inferred="true"} ! regulation of mesoderm formation +is_a: GO:2000382 {is_inferred="true"} ! positive regulation of mesoderm development +is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation + +[Term] +id: GO:1905905 ! pharyngeal gland morphogenesis +is_a: GO:0022612 {is_inferred="true"} ! gland morphogenesis + +[Term] +id: GO:1905906 ! regulation of amyloid fibril formation +is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization + +[Term] +id: GO:1905907 ! negative regulation of amyloid fibril formation +is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization +is_a: GO:1905906 {is_inferred="true"} ! regulation of amyloid fibril formation + +[Term] +id: GO:1905908 ! positive regulation of amyloid fibril formation +is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization +is_a: GO:1905906 {is_inferred="true"} ! regulation of amyloid fibril formation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38557 | termgenie | 2017-02-02 12:28:56 -0800 (Thu, 02 Feb 2017) | 2 lines TermGenie commit for user: pgarmiri reviewed by tberardini changes in entailments ------------------------------------------------------------------------ r38555 | cjm | 2017-02-02 11:43:32 -0800 (Thu, 02 Feb 2017) | 1 line killing EC dashes forever, https://github.com/geneontology/go-ontology/issues/12988 changes in entailments ------------------------------------------------------------------------ r38542 | tberardi | 2017-02-01 17:29:17 -0800 (Wed, 01 Feb 2017) | 1 line GH12892 Transcription occurs_in nuclear chromatin - closed again changes in entailments ------------------------------------------------------------------------ r38540 | tberardi | 2017-02-01 16:49:24 -0800 (Wed, 01 Feb 2017) | 1 line GH12983 NTR: Tenascin complex - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38540) +++ go_inferences.obo (working copy) @@ -57685,6 +57685,10 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] +id: GO:0090733 ! tenascin complex +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate ------------------------------------------------------------------------ r38538 | termgenie | 2017-02-01 16:21:25 -0800 (Wed, 01 Feb 2017) | 3 lines TermGenie commit for user: BarbaraCzub reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38538) +++ go_inferences.obo (working copy) @@ -47504,6 +47504,7 @@ [Term] id: GO:0060734 ! regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation is_a: GO:0006446 {is_inferred="true"} ! regulation of translational initiation +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:0060735 ! regulation of eIF2 alpha phosphorylation by dsRNA @@ -61367,7 +61368,7 @@ [Term] id: GO:1900101 ! regulation of endoplasmic reticulum unfolded protein response is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:1900102 ! negative regulation of endoplasmic reticulum unfolded protein response @@ -61379,6 +61380,7 @@ id: GO:1900103 ! positive regulation of endoplasmic reticulum unfolded protein response is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction is_a: GO:1900101 {is_inferred="true"} ! regulation of endoplasmic reticulum unfolded protein response +is_a: GO:1905898 {is_inferred="true"} ! positive regulation of response to endoplasmic reticulum stress [Term] id: GO:1900104 ! regulation of hyaluranon cable assembly @@ -72340,7 +72342,7 @@ [Term] id: GO:1902235 ! regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress is_a: GO:2001242 {is_inferred="true"} ! regulation of intrinsic apoptotic signaling pathway [Term] @@ -72352,6 +72354,7 @@ [Term] id: GO:1902237 ! positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway is_a: GO:1902235 {is_inferred="true"} ! regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway +is_a: GO:1905898 {is_inferred="true"} ! positive regulation of response to endoplasmic reticulum stress is_a: GO:2001244 {is_inferred="true"} ! positive regulation of intrinsic apoptotic signaling pathway [Term] @@ -78529,7 +78532,7 @@ id: GO:1903573 ! negative regulation of response to endoplasmic reticulum stress is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:1903574 ! negative regulation of cellular response to amino acid starvation @@ -80172,14 +80175,14 @@ is_a: GO:0032535 {is_inferred="true"} ! regulation of cellular component size is_a: GO:0035304 {is_inferred="true"} ! regulation of protein dephosphorylation is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:1903917 ! positive regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation is_a: GO:0035307 {is_inferred="true"} ! positive regulation of protein dephosphorylation -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903916 {is_inferred="true"} ! regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation +is_a: GO:1905898 {is_inferred="true"} ! positive regulation of response to endoplasmic reticulum stress [Term] id: GO:1903918 ! regulation of actin filament severing @@ -81971,7 +81974,7 @@ [Term] id: GO:1904292 ! regulation of ERAD pathway is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress [Term] id: GO:1904293 ! negative regulation of ERAD pathway @@ -81982,9 +81985,8 @@ [Term] id: GO:1904294 ! positive regulation of ERAD pathway is_a: GO:0045732 {is_inferred="true"} ! positive regulation of protein catabolic process -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus is_a: GO:1904292 {is_inferred="true"} ! regulation of ERAD pathway +is_a: GO:1905898 {is_inferred="true"} ! positive regulation of response to endoplasmic reticulum stress [Term] id: GO:1904295 ! regulation of osmolarity-sensing cation channel activity @@ -89757,6 +89759,16 @@ is_a: GO:1905894 {is_inferred="true"} ! regulation of cellular response to tunicamycin [Term] +id: GO:1905897 ! regulation of response to endoplasmic reticulum stress +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress + +[Term] +id: GO:1905898 ! positive regulation of response to endoplasmic reticulum stress +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905897 {is_inferred="true"} ! regulation of response to endoplasmic reticulum stress + +[Term] id: GO:1905899 ! regulation of smooth muscle tissue development is_a: GO:1901861 {is_inferred="true"} ! regulation of muscle tissue development ------------------------------------------------------------------------ r38536 | tberardi | 2017-02-01 15:45:53 -0800 (Wed, 01 Feb 2017) | 1 line GH12977 cellular response to very-low-density lipoprotein particle stimulus - closed again changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38536) +++ go_inferences.obo (working copy) @@ -89702,9 +89702,75 @@ [Term] id: GO:1905887 ! autoinducer AI-2 transmembrane transport +is_a: GO:0015791 {is_inferred="true"} ! polyol transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] +id: GO:1905888 ! negative regulation of cellular response to very-low-density lipoprotein particle stimulus +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905890 {is_inferred="true"} ! regulation of cellular response to very-low-density lipoprotein particle stimulus + +[Term] +id: GO:1905889 ! positive regulation of cellular response to very-low-density lipoprotein particle stimulus +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905890 {is_inferred="true"} ! regulation of cellular response to very-low-density lipoprotein particle stimulus + +[Term] +id: GO:1905890 ! regulation of cellular response to very-low-density lipoprotein particle stimulus +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process + +[Term] +id: GO:1905891 ! regulation of cellular response to thapsigargin +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process + +[Term] +id: GO:1905892 ! negative regulation of cellular response to thapsigargin +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905891 {is_inferred="true"} ! regulation of cellular response to thapsigargin + +[Term] +id: GO:1905893 ! positive regulation of cellular response to thapsigargin +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905891 {is_inferred="true"} ! regulation of cellular response to thapsigargin + +[Term] +id: GO:1905894 ! regulation of cellular response to tunicamycin +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process + +[Term] +id: GO:1905895 ! negative regulation of cellular response to tunicamycin +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905894 {is_inferred="true"} ! regulation of cellular response to tunicamycin + +[Term] +id: GO:1905896 ! positive regulation of cellular response to tunicamycin +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905894 {is_inferred="true"} ! regulation of cellular response to tunicamycin + +[Term] +id: GO:1905899 ! regulation of smooth muscle tissue development +is_a: GO:1901861 {is_inferred="true"} ! regulation of muscle tissue development + +[Term] +id: GO:1905900 ! negative regulation of smooth muscle tissue development +is_a: GO:1901862 {is_inferred="true"} ! negative regulation of muscle tissue development +is_a: GO:1905899 {is_inferred="true"} ! regulation of smooth muscle tissue development + +[Term] +id: GO:1905901 ! positive regulation of smooth muscle tissue development +is_a: GO:1901863 {is_inferred="true"} ! positive regulation of muscle tissue development +is_a: GO:1905899 {is_inferred="true"} ! regulation of smooth muscle tissue development + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -91024,13 +91090,13 @@ [Term] id: GO:2000061 ! regulation of ureter smooth muscle cell differentiation is_a: GO:0051150 {is_inferred="true"} ! regulation of smooth muscle cell differentiation -is_a: GO:1901861 {is_inferred="true"} ! regulation of muscle tissue development +is_a: GO:1905899 {is_inferred="true"} ! regulation of smooth muscle tissue development [Term] id: GO:2000062 ! negative regulation of ureter smooth muscle cell differentiation is_a: GO:0051151 {is_inferred="true"} ! negative regulation of smooth muscle cell differentiation is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1901862 {is_inferred="true"} ! negative regulation of muscle tissue development +is_a: GO:1905900 {is_inferred="true"} ! negative regulation of smooth muscle tissue development is_a: GO:2000061 {is_inferred="true"} ! regulation of ureter smooth muscle cell differentiation [Term] @@ -91037,7 +91103,7 @@ id: GO:2000063 ! positive regulation of ureter smooth muscle cell differentiation is_a: GO:0051152 {is_inferred="true"} ! positive regulation of smooth muscle cell differentiation is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1901863 {is_inferred="true"} ! positive regulation of muscle tissue development +is_a: GO:1905901 {is_inferred="true"} ! positive regulation of smooth muscle tissue development is_a: GO:2000061 {is_inferred="true"} ! regulation of ureter smooth muscle cell differentiation [Term] @@ -92454,13 +92520,13 @@ id: GO:2000356 ! regulation of kidney smooth muscle cell differentiation is_a: GO:0051150 {is_inferred="true"} ! regulation of smooth muscle cell differentiation is_a: GO:0090183 {is_inferred="true"} ! regulation of kidney development -is_a: GO:1901861 {is_inferred="true"} ! regulation of muscle tissue development +is_a: GO:1905899 {is_inferred="true"} ! regulation of smooth muscle tissue development [Term] id: GO:2000357 ! negative regulation of kidney smooth muscle cell differentiation is_a: GO:0051151 {is_inferred="true"} ! negative regulation of smooth muscle cell differentiation is_a: GO:0090185 {is_inferred="true"} ! negative regulation of kidney development -is_a: GO:1901862 {is_inferred="true"} ! negative regulation of muscle tissue development +is_a: GO:1905900 {is_inferred="true"} ! negative regulation of smooth muscle tissue development is_a: GO:2000356 {is_inferred="true"} ! regulation of kidney smooth muscle cell differentiation [Term] @@ -92467,7 +92533,7 @@ id: GO:2000358 ! positive regulation of kidney smooth muscle cell differentiation is_a: GO:0051152 {is_inferred="true"} ! positive regulation of smooth muscle cell differentiation is_a: GO:0090184 {is_inferred="true"} ! positive regulation of kidney development -is_a: GO:1901863 {is_inferred="true"} ! positive regulation of muscle tissue development +is_a: GO:1905901 {is_inferred="true"} ! positive regulation of smooth muscle tissue development is_a: GO:2000356 {is_inferred="true"} ! regulation of kidney smooth muscle cell differentiation [Term] ------------------------------------------------------------------------ r38522 | tberardi | 2017-01-31 18:20:12 -0800 (Tue, 31 Jan 2017) | 1 line GH12981 xref to EC for ... - xrefs fixed changes in entailments ------------------------------------------------------------------------ r38518 | tberardi | 2017-01-31 17:51:47 -0800 (Tue, 31 Jan 2017) | 1 line GH12543 NTR: maintenance of differentiated cell state - almost closed changes in entailments ------------------------------------------------------------------------ r38516 | tberardi | 2017-01-31 17:46:18 -0800 (Tue, 31 Jan 2017) | 1 line GH12979 cofilin-actin rod - closed changes in entailments ------------------------------------------------------------------------ r38515 | tberardi | 2017-01-31 17:40:54 -0800 (Tue, 31 Jan 2017) | 1 line GH12972 Add taxon restriction for carotenoid/ pombe and S. cerevisae - closed changes in entailments ------------------------------------------------------------------------ r38513 | tberardi | 2017-01-31 17:20:55 -0800 (Tue, 31 Jan 2017) | 1 line GH12978 cell elongation - closed changes in entailments ------------------------------------------------------------------------ r38510 | tberardi | 2017-01-31 17:06:20 -0800 (Tue, 31 Jan 2017) | 1 line GH12971 Two contradictory meanings for lipoprotein in GO - closed changes in entailments ------------------------------------------------------------------------ r38508 | termgenie | 2017-01-31 16:40:09 -0800 (Tue, 31 Jan 2017) | 2 lines TermGenie commit for user: mah11 reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38508) +++ go_inferences.obo (working copy) @@ -20561,29 +20561,21 @@ id: GO:0030710 ! regulation of border follicle cell delamination is_a: GO:0022407 {is_inferred="true"} ! regulation of cell-cell adhesion is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis [Term] id: GO:0030711 ! positive regulation of border follicle cell delamination -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0030710 {is_inferred="true"} ! regulation of border follicle cell delamination is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process +is_a: GO:1905881 {is_inferred="true"} ! positive regulation of oogenesis [Term] id: GO:0030712 ! negative regulation of border follicle cell delamination -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0022409 {is_inferred="true"} ! positive regulation of cell-cell adhesion is_a: GO:0030710 {is_inferred="true"} ! regulation of border follicle cell delamination is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process +is_a: GO:1905880 {is_inferred="true"} ! negative regulation of oogenesis [Term] id: GO:0030713 ! ovarian follicle cell stalk formation @@ -36162,11 +36154,8 @@ [Term] id: GO:0045477 ! regulation of nurse cell apoptotic process -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:1904748 {is_inferred="true"} ! regulation of apoptotic process involved in development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis [Term] id: GO:0045478 ! fusome organization @@ -36474,25 +36463,22 @@ [Term] id: GO:0045592 ! regulation of cumulus cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis is_a: GO:2000387 {is_inferred="true"} ! regulation of antral ovarian follicle growth [Term] id: GO:0045593 ! negative regulation of cumulus cell differentiation -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045592 {is_inferred="true"} ! regulation of cumulus cell differentiation is_a: GO:0048640 {is_inferred="true"} ! negative regulation of developmental growth +is_a: GO:1905880 {is_inferred="true"} ! negative regulation of oogenesis is_a: GO:2000355 {is_inferred="true"} ! negative regulation of ovarian follicle development [Term] id: GO:0045594 ! positive regulation of cumulus cell differentiation -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045592 {is_inferred="true"} ! regulation of cumulus cell differentiation +is_a: GO:1905881 {is_inferred="true"} ! positive regulation of oogenesis is_a: GO:2000388 {is_inferred="true"} ! positive regulation of antral ovarian follicle growth [Term] @@ -37474,19 +37460,15 @@ [Term] id: GO:0045849 ! negative regulation of nurse cell apoptotic process -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045477 {is_inferred="true"} ! regulation of nurse cell apoptotic process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1904746 {is_inferred="true"} ! negative regulation of apoptotic process involved in development +is_a: GO:1905880 {is_inferred="true"} ! negative regulation of oogenesis [Term] id: GO:0045850 ! positive regulation of nurse cell apoptotic process -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045477 {is_inferred="true"} ! regulation of nurse cell apoptotic process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1904747 {is_inferred="true"} ! positive regulation of apoptotic process involved in development +is_a: GO:1905881 {is_inferred="true"} ! positive regulation of oogenesis [Term] id: GO:0045853 ! negative regulation of bicoid mRNA localization @@ -46359,26 +46341,17 @@ [Term] id: GO:0060281 ! regulation of oocyte development -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis [Term] id: GO:0060282 ! positive regulation of oocyte development -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0060281 {is_inferred="true"} ! regulation of oocyte development -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process +is_a: GO:1905881 {is_inferred="true"} ! positive regulation of oogenesis [Term] id: GO:0060283 ! negative regulation of oocyte development -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:0060281 {is_inferred="true"} ! regulation of oocyte development -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process +is_a: GO:1905880 {is_inferred="true"} ! negative regulation of oogenesis [Term] id: GO:0060287 ! epithelial cilium movement involved in determination of left/right asymmetry @@ -79132,27 +79105,21 @@ id: GO:1903684 ! regulation of border follicle cell migration is_a: GO:0010632 {is_inferred="true"} ! regulation of epithelial cell migration is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis [Term] id: GO:1903687 ! negative regulation of border follicle cell migration is_a: GO:0010633 {is_inferred="true"} ! negative regulation of epithelial cell migration -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1903684 {is_inferred="true"} ! regulation of border follicle cell migration -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process +is_a: GO:1905880 {is_inferred="true"} ! negative regulation of oogenesis [Term] id: GO:1903688 ! positive regulation of border follicle cell migration is_a: GO:0010634 {is_inferred="true"} ! positive regulation of epithelial cell migration -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1903684 {is_inferred="true"} ! regulation of border follicle cell migration -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process +is_a: GO:1905881 {is_inferred="true"} ! positive regulation of oogenesis [Term] id: GO:1903689 ! regulation of wound healing, spreading of epidermal cells @@ -89692,6 +89659,48 @@ is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization [Term] +id: GO:1905879 ! regulation of oogenesis +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process +is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process + +[Term] +id: GO:1905880 ! negative regulation of oogenesis +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis +is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process + +[Term] +id: GO:1905881 ! positive regulation of oogenesis +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905879 {is_inferred="true"} ! regulation of oogenesis +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process + +[Term] +id: GO:1905883 ! regulation of triglyceride transport +is_a: GO:1901506 {is_inferred="true"} ! regulation of acylglycerol transport + +[Term] +id: GO:1905884 ! negative regulation of triglyceride transport +is_a: GO:1901507 {is_inferred="true"} ! negative regulation of acylglycerol transport +is_a: GO:1905883 {is_inferred="true"} ! regulation of triglyceride transport + +[Term] +id: GO:1905885 ! positive regulation of triglyceride transport +is_a: GO:1901508 {is_inferred="true"} ! positive regulation of acylglycerol transport +is_a: GO:1905883 {is_inferred="true"} ! regulation of triglyceride transport + +[Term] +id: GO:1905886 ! chromatin remodeling involved in meiosis I +is_a: GO:0006338 {is_inferred="true"} ! chromatin remodeling +is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process + +[Term] id: GO:1905887 ! autoinducer AI-2 transmembrane transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport ------------------------------------------------------------------------ r38504 | termgenie | 2017-01-31 06:41:54 -0800 (Tue, 31 Jan 2017) | 2 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38504) +++ go_inferences.obo (working copy) @@ -89692,6 +89692,10 @@ is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization [Term] +id: GO:1905887 ! autoinducer AI-2 transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38498 | dph | 2017-01-31 05:55:35 -0800 (Tue, 31 Jan 2017) | 2 lines GH12966-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38498) +++ go_inferences.obo (working copy) @@ -27988,6 +27988,10 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] +id: GO:0034506 ! chromosome, centromeric core domain +is_a: GO:0098687 {is_inferred="true"} ! chromosomal region + +[Term] id: GO:0034507 ! chromosome, centromeric outer repeat region is_a: GO:0098687 {is_inferred="true"} ! chromosomal region ------------------------------------------------------------------------ r38486 | termgenie | 2017-01-30 16:37:12 -0800 (Mon, 30 Jan 2017) | 3 lines TermGenie commit for user: slaulederkind reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38486) +++ go_inferences.obo (working copy) @@ -75453,9 +75453,9 @@ [Term] id: GO:1902897 ! regulation of postsynaptic density protein 95 clustering -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:1901626 {is_inferred="true"} ! regulation of postsynaptic membrane organization is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane +is_a: GO:1905874 {is_inferred="true"} ! regulation of postsynaptic density organization [Term] id: GO:1902898 ! fatty acid methyl ester metabolic process @@ -89662,6 +89662,32 @@ is_a: GO:1905871 {is_inferred="true"} ! regulation of protein localization to cell leading edge [Term] +id: GO:1905874 ! regulation of postsynaptic density organization +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization +is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization + +[Term] +id: GO:1905875 ! negative regulation of postsynaptic density organization +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization +is_a: GO:1905874 {is_inferred="true"} ! regulation of postsynaptic density organization + +[Term] +id: GO:1905876 ! positive regulation of postsynaptic density organization +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization +is_a: GO:1905874 {is_inferred="true"} ! regulation of postsynaptic density organization + +[Term] +id: GO:1905877 ! invadopodium assembly +is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization + +[Term] +id: GO:1905878 ! invadopodium disassembly +is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly +is_a: GO:1905863 {is_inferred="true"} ! invadopodium organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38477 | dph | 2017-01-30 06:22:44 -0800 (Mon, 30 Jan 2017) | 2 lines GH12965-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38477) +++ go_inferences.obo (working copy) @@ -24814,6 +24814,11 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] +id: GO:0032839 ! dendrite cytoplasm +is_a: GO:0032838 {is_inferred="true"} ! cell projection cytoplasm +is_a: GO:0097458 {is_inferred="true"} ! neuron part + +[Term] id: GO:0032847 ! regulation of cellular pH reduction is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:0051453 {is_inferred="true"} ! regulation of intracellular pH @@ -49279,6 +49284,11 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] +id: GO:0061846 ! dendritic spine cytoplasm +is_a: GO:0032839 {is_inferred="true"} ! dendrite cytoplasm +is_a: GO:0044456 {is_inferred="true"} ! synapse part + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38441 | dph | 2017-01-27 12:47:13 -0800 (Fri, 27 Jan 2017) | 3 lines GH12964-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38441) +++ go_inferences.obo (working copy) @@ -27983,10 +27983,6 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] -id: GO:0034506 ! chromosome, centromeric core domain -is_a: GO:0000775 {is_inferred="true"} ! chromosome, centromeric region - -[Term] id: GO:0034507 ! chromosome, centromeric outer repeat region is_a: GO:0098687 {is_inferred="true"} ! chromosomal region @@ -49279,6 +49275,10 @@ is_a: GO:0051179 {is_inferred="true"} ! localization [Term] +id: GO:0061845 ! neuron projection branch point +is_a: GO:0097458 {is_inferred="true"} ! neuron part + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -89664,10 +89664,6 @@ is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus [Term] -id: GO:1990033 ! dendritic branch point -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:1990034 ! calcium ion export from cell is_a: GO:1901660 {is_inferred="true"} ! calcium ion export ------------------------------------------------------------------------ r38439 | dph | 2017-01-27 12:29:21 -0800 (Fri, 27 Jan 2017) | 2 lines GH12961-closed changes in entailments ------------------------------------------------------------------------ r38437 | dph | 2017-01-27 12:10:49 -0800 (Fri, 27 Jan 2017) | 2 lines GH12957-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38437) +++ go_inferences.obo (working copy) @@ -49270,7 +49270,7 @@ is_a: GO:0044427 {is_inferred="true"} ! chromosomal part [Term] -id: GO:0061841 ! high affinity iron exporter complex +id: GO:0061841 ! high-affinity iron exporter complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1902495 {is_inferred="true"} ! transmembrane transporter complex ------------------------------------------------------------------------ r38434 | termgenie | 2017-01-27 11:47:49 -0800 (Fri, 27 Jan 2017) | 4 lines TermGenie commit for user: slaulederkind reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38434) +++ go_inferences.obo (working copy) @@ -89602,6 +89602,10 @@ is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] +id: GO:1905863 ! invadopodium organization +is_a: GO:0030030 {is_inferred="true"} ! cell projection organization + +[Term] id: GO:1905864 ! regulation of ATG1/ULK1 kinase complex assembly is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly @@ -89616,6 +89620,38 @@ is_a: GO:1905864 {is_inferred="true"} ! regulation of ATG1/ULK1 kinase complex assembly [Term] +id: GO:1905867 ! epididymis development +is_a: GO:0048608 {is_inferred="true"} ! reproductive structure development + +[Term] +id: GO:1905868 ! regulation of 3'-UTR-mediated mRNA stabilization +is_a: GO:0043488 {is_inferred="true"} ! regulation of mRNA stability + +[Term] +id: GO:1905869 ! negative regulation of 3'-UTR-mediated mRNA stabilization +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905868 {is_inferred="true"} ! regulation of 3'-UTR-mediated mRNA stabilization + +[Term] +id: GO:1905870 ! positive regulation of 3'-UTR-mediated mRNA stabilization +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905868 {is_inferred="true"} ! regulation of 3'-UTR-mediated mRNA stabilization + +[Term] +id: GO:1905871 ! regulation of protein localization to cell leading edge +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] +id: GO:1905872 ! negative regulation of protein localization to cell leading edge +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization +is_a: GO:1905871 {is_inferred="true"} ! regulation of protein localization to cell leading edge + +[Term] +id: GO:1905873 ! positive regulation of protein localization to cell leading edge +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905871 {is_inferred="true"} ! regulation of protein localization to cell leading edge + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38424 | dph | 2017-01-26 12:48:48 -0800 (Thu, 26 Jan 2017) | 2 lines GH12960-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38424) +++ go_inferences.obo (working copy) @@ -44656,6 +44656,7 @@ [Term] id: GO:0051642 ! centrosome localization is_a: GO:0051640 {is_inferred="true"} ! organelle localization +is_a: GO:0061842 {is_inferred="true"} ! microtubule organizing center localization [Term] id: GO:0051644 ! plastid localization @@ -49274,6 +49275,10 @@ is_a: GO:1902495 {is_inferred="true"} ! transmembrane transporter complex [Term] +id: GO:0061842 ! microtubule organizing center localization +is_a: GO:0051179 {is_inferred="true"} ! localization + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -50513,6 +50518,10 @@ is_a: GO:0070629 {is_inferred="true"} ! (1->4)-alpha-glucan metabolic process [Term] +id: GO:0070631 ! spindle pole body localization +is_a: GO:0061842 {is_inferred="true"} ! microtubule organizing center localization + +[Term] id: GO:0070632 ! establishment of spindle pole body localization is_a: GO:0070631 {is_inferred="true"} ! spindle pole body localization ------------------------------------------------------------------------ r38421 | dph | 2017-01-26 11:58:40 -0800 (Thu, 26 Jan 2017) | 2 lines A whole bunch of iron transport edits and additions. GH12957-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38421) +++ go_inferences.obo (working copy) @@ -26614,6 +26614,7 @@ [Term] id: GO:0033573 ! high-affinity iron permease complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:1902495 {is_inferred="true"} ! transmembrane transporter complex [Term] id: GO:0033574 ! response to testosterone @@ -27983,7 +27984,7 @@ [Term] id: GO:0034506 ! chromosome, centromeric core domain -is_a: GO:0098687 {is_inferred="true"} ! chromosomal region +is_a: GO:0000775 {is_inferred="true"} ! chromosome, centromeric region [Term] id: GO:0034507 ! chromosome, centromeric outer repeat region @@ -49268,6 +49269,11 @@ is_a: GO:0044427 {is_inferred="true"} ! chromosomal part [Term] +id: GO:0061841 ! high affinity iron exporter complex +is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex +is_a: GO:1902495 {is_inferred="true"} ! transmembrane transporter complex + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -97803,6 +97809,18 @@ is_a: CHEBI:36080 {is_inferred="true"} ! protein [Term] +id: SO:0000651 ! large_subunit_rRNA +is_a: CHEBI:18111 {is_inferred="true"} ! ribosomal RNA + +[Term] +id: SO:0000862 ! capped_mRNA +is_a: CHEBI:33699 {is_inferred="true"} ! messenger RNA + +[Term] +id: SO:0000871 ! polyadenylated_mRNA +is_a: CHEBI:33699 {is_inferred="true"} ! messenger RNA + +[Term] id: UBERON:0001289 ! descending limb of loop of Henle is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium ------------------------------------------------------------------------ r38408 | termgenie | 2017-01-26 05:27:24 -0800 (Thu, 26 Jan 2017) | 4 lines TermGenie commit for user: paolaroncaglia reviewed by paolaroncaglia changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38408) +++ go_inferences.obo (working copy) @@ -89587,6 +89587,20 @@ is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] +id: GO:1905864 ! regulation of ATG1/ULK1 kinase complex assembly +is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly + +[Term] +id: GO:1905865 ! negative regulation of ATG1/ULK1 kinase complex assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:1905864 {is_inferred="true"} ! regulation of ATG1/ULK1 kinase complex assembly + +[Term] +id: GO:1905866 ! positive regulation of ATG1/ULK1 kinase complex assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:1905864 {is_inferred="true"} ! regulation of ATG1/ULK1 kinase complex assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38405 | dph | 2017-01-25 09:57:04 -0800 (Wed, 25 Jan 2017) | 2 lines Edits to N-glycan trimming and some other glycoprotein processing terms. GH12913-closed changes in entailments ------------------------------------------------------------------------ r38403 | cjm | 2017-01-25 08:27:36 -0800 (Wed, 25 Jan 2017) | 1 line melanosome part-of melanocyte, https://github.com/geneontology/go-ontology/issues/12699 changes in entailments ------------------------------------------------------------------------ r38400 | paola | 2017-01-25 07:44:45 -0800 (Wed, 25 Jan 2017) | 3 lines GH membrane tubulation/curvature #12387 - work in progress - see ticket for details changes in entailments ------------------------------------------------------------------------ r38397 | mcourtot | 2017-01-25 07:01:31 -0800 (Wed, 25 Jan 2017) | 1 line merged in regulation terms as per https://github.com/geneontology/go-ontology/issues/12771 changes in entailments ------------------------------------------------------------------------ r38396 | termgenie | 2017-01-25 06:58:54 -0800 (Wed, 25 Jan 2017) | 2 lines TermGenie commit for user: bmeldal reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38396) +++ go_inferences.obo (working copy) @@ -89582,6 +89582,11 @@ is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] +id: GO:1905862 ! ferroxidase complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38393 | mcourtot | 2017-01-25 06:48:45 -0800 (Wed, 25 Jan 2017) | 1 line merged in positive regulation terms as per https://github.com/geneontology/go-ontology/issues/12771 changes in entailments ------------------------------------------------------------------------ r38387 | mcourtot | 2017-01-25 06:07:52 -0800 (Wed, 25 Jan 2017) | 1 line Closes https://github.com/geneontology/go-ontology/issues/12727. Updated cytolysis by virus of host cell to be part_of viral release from host cell changes in entailments ------------------------------------------------------------------------ r38384 | dph | 2017-01-25 05:26:39 -0800 (Wed, 25 Jan 2017) | 2 lines GH12500-closed. Added gluconate pathway as a related synonym to the Entner-Doudoroff Pathway. changes in entailments ------------------------------------------------------------------------ r38381 | paola | 2017-01-25 00:38:07 -0800 (Wed, 25 Jan 2017) | 3 lines For cilia project: added missing dbxref GOC:cilia to 13 selected terms changes in entailments ------------------------------------------------------------------------ r38381 | paola | 2017-01-25 00:38:07 -0800 (Wed, 25 Jan 2017) | 3 lines For cilia project: added missing dbxref GOC:cilia to 13 selected terms changes in entailments ------------------------------------------------------------------------ r38374 | dph | 2017-01-24 11:09:18 -0800 (Tue, 24 Jan 2017) | 2 lines GH12951-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38374) +++ go_inferences.obo (working copy) @@ -54437,10 +54437,6 @@ is_a: GO:1904019 {is_inferred="true"} ! epithelial cell apoptotic process [Term] -id: GO:0072588 ! box H/ACA RNP complex -is_a: GO:0044428 {is_inferred="true"} ! nuclear part - -[Term] id: GO:0072589 ! box H/ACA scaRNP complex is_a: GO:1902494 {is_inferred="true"} ! catalytic complex @@ -57654,6 +57650,10 @@ is_a: GO:0008033 {is_inferred="true"} ! tRNA processing [Term] +id: GO:0090661 ! box H/ACA telomerase RNP complex +is_a: GO:0044428 {is_inferred="true"} ! nuclear part + +[Term] id: GO:0090662 ! ATP hydrolysis coupled transmembrane transport is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport ------------------------------------------------------------------------ r38372 | dph | 2017-01-24 11:00:45 -0800 (Tue, 24 Jan 2017) | 2 lines GH12952-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38372) +++ go_inferences.obo (working copy) @@ -49264,6 +49264,10 @@ is_a: GO:1902414 {is_inferred="true"} ! protein localization to cell junction [Term] +id: GO:0061838 ! CENP-T-W-S-X complex +is_a: GO:0044427 {is_inferred="true"} ! chromosomal part + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38370 | paola | 2017-01-24 07:57:27 -0800 (Tue, 24 Jan 2017) | 3 lines GH GO and vesicle nomenclature #11504 - work in progress - added has_parts to ‘ribonucleoprotein complex’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38370) +++ go_inferences.obo (working copy) @@ -6922,7 +6922,6 @@ [Term] id: GO:0006608 ! snRNP protein import into nucleus -is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus is_a: GO:0071167 {is_inferred="true"} ! ribonucleoprotein complex import into nucleus [Term] @@ -12603,6 +12602,7 @@ [Term] id: GO:0010793 ! regulation of mRNA export from nucleus is_a: GO:0010468 {is_inferred="true"} ! regulation of gene expression +is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus is_a: GO:2000197 {is_inferred="true"} ! regulation of ribonucleoprotein complex localization @@ -26880,11 +26880,13 @@ [Term] id: GO:0033750 ! ribosome localization +is_a: GO:0008104 {is_inferred="true"} ! protein localization is_a: GO:0051640 {is_inferred="true"} ! organelle localization [Term] id: GO:0033753 ! establishment of ribosome localization is_a: GO:0033750 {is_inferred="true"} ! ribosome localization +is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization [Term] id: GO:0033762 ! response to glucagon @@ -51605,7 +51607,8 @@ [Term] id: GO:0071167 ! ribonucleoprotein complex import into nucleus -is_a: GO:0051170 {is_inferred="true"} ! nuclear import +is_a: GO:0006404 {is_inferred="true"} ! RNA import into nucleus +is_a: GO:0006606 {is_inferred="true"} ! protein import into nucleus [Term] id: GO:0071169 ! establishment of protein localization to chromatin @@ -52430,7 +52433,8 @@ [Term] id: GO:0071426 ! ribonucleoprotein complex export from nucleus -is_a: GO:0051168 {is_inferred="true"} ! nuclear export +is_a: GO:0006405 {is_inferred="true"} ! RNA export from nucleus +is_a: GO:0006611 {is_inferred="true"} ! protein export from nucleus [Term] id: GO:0071432 ! peptide mating pheromone maturation involved in conjugation with cellular fusion @@ -59589,7 +59593,9 @@ [Term] id: GO:0098961 ! dendritic transport of ribonucleoprotein complex +is_a: GO:0050658 {is_inferred="true"} ! RNA transport is_a: GO:0098935 {is_inferred="true"} ! dendritic transport +is_a: GO:0099640 {is_inferred="true"} ! axo-dendritic protein transport [Term] id: GO:0098962 ! regulation of postsynaptic neurotransmitter receptor activity @@ -59601,6 +59607,7 @@ [Term] id: GO:0098964 ! anterograde dendritic transport of messenger ribonucleoprotein complex +is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0098937 {is_inferred="true"} ! anterograde dendritic transport is_a: GO:0098963 {is_inferred="true"} ! dendritic transport of messenger ribonucleoprotein complex @@ -59981,12 +59988,14 @@ [Term] id: GO:0099087 ! anterograde axonal transport of messenger ribonucleoprotein complex -is_a: GO:0008089 {is_inferred="true"} ! anterograde axonal transport is_a: GO:0099088 {is_inferred="true"} ! axonal transport of messenger ribonucleoprotein complex +is_a: GO:0099641 {is_inferred="true"} ! anterograde axonal protein transport [Term] id: GO:0099088 ! axonal transport of messenger ribonucleoprotein complex +is_a: GO:0050658 {is_inferred="true"} ! RNA transport is_a: GO:0098930 {is_inferred="true"} ! axonal transport +is_a: GO:0099640 {is_inferred="true"} ! axo-dendritic protein transport [Term] id: GO:0099089 ! establishment of endoplasmic reticulum localization to postsynapse @@ -91550,13 +91559,15 @@ [Term] id: GO:2000200 ! regulation of ribosomal subunit export from nucleus -is_a: GO:0046822 {is_inferred="true"} ! regulation of nucleocytoplasmic transport +is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus +is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus is_a: GO:0090069 {is_inferred="true"} ! regulation of ribosome biogenesis is_a: GO:2000197 {is_inferred="true"} ! regulation of ribonucleoprotein complex localization [Term] id: GO:2000201 ! negative regulation of ribosomal subunit export from nucleus -is_a: GO:0046823 {is_inferred="true"} ! negative regulation of nucleocytoplasmic transport +is_a: GO:0046826 {is_inferred="true"} ! negative regulation of protein export from nucleus +is_a: GO:0046832 {is_inferred="true"} ! negative regulation of RNA export from nucleus is_a: GO:0090071 {is_inferred="true"} ! negative regulation of ribosome biogenesis is_a: GO:2000198 {is_inferred="true"} ! negative regulation of ribonucleoprotein complex localization is_a: GO:2000200 {is_inferred="true"} ! regulation of ribosomal subunit export from nucleus @@ -91563,7 +91574,8 @@ [Term] id: GO:2000202 ! positive regulation of ribosomal subunit export from nucleus -is_a: GO:0046824 {is_inferred="true"} ! positive regulation of nucleocytoplasmic transport +is_a: GO:0046827 {is_inferred="true"} ! positive regulation of protein export from nucleus +is_a: GO:0046833 {is_inferred="true"} ! positive regulation of RNA export from nucleus is_a: GO:0090070 {is_inferred="true"} ! positive regulation of ribosome biogenesis is_a: GO:2000199 {is_inferred="true"} ! positive regulation of ribonucleoprotein complex localization is_a: GO:2000200 {is_inferred="true"} ! regulation of ribosomal subunit export from nucleus @@ -91737,11 +91749,13 @@ [Term] id: GO:2000238 ! regulation of tRNA export from nucleus +is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus is_a: GO:0046831 {is_inferred="true"} ! regulation of RNA export from nucleus is_a: GO:2000197 {is_inferred="true"} ! regulation of ribonucleoprotein complex localization [Term] id: GO:2000239 ! negative regulation of tRNA export from nucleus +is_a: GO:0046826 {is_inferred="true"} ! negative regulation of protein export from nucleus is_a: GO:0046832 {is_inferred="true"} ! negative regulation of RNA export from nucleus is_a: GO:2000198 {is_inferred="true"} ! negative regulation of ribonucleoprotein complex localization is_a: GO:2000238 {is_inferred="true"} ! regulation of tRNA export from nucleus @@ -91748,6 +91762,7 @@ [Term] id: GO:2000240 ! positive regulation of tRNA export from nucleus +is_a: GO:0046827 {is_inferred="true"} ! positive regulation of protein export from nucleus is_a: GO:0046833 {is_inferred="true"} ! positive regulation of RNA export from nucleus is_a: GO:2000199 {is_inferred="true"} ! positive regulation of ribonucleoprotein complex localization is_a: GO:2000238 {is_inferred="true"} ! regulation of tRNA export from nucleus ------------------------------------------------------------------------ r38367 | dph | 2017-01-24 06:54:39 -0800 (Tue, 24 Jan 2017) | 2 lines GH12949-closed changes in entailments ------------------------------------------------------------------------ r38361 | paola | 2017-01-24 03:46:55 -0800 (Tue, 24 Jan 2017) | 3 lines GH GO:0003729 mRNA binding is currently child of poly(A) RNA binding #11022 - work in progress - merged ‘poly(A) RNA binding’ into ‘RNA binding’ changes in entailments ------------------------------------------------------------------------ r38359 | paola | 2017-01-24 03:39:08 -0800 (Tue, 24 Jan 2017) | 3 lines GH GO:0003729 mRNA binding is currently child of poly(A) RNA binding #11022 - work in progress - moved ‘mRNA binding’ from under ‘poly(A) RNA binding’ to ‘RNA binding’ changes in entailments ------------------------------------------------------------------------ r38357 | paola | 2017-01-24 02:27:23 -0800 (Tue, 24 Jan 2017) | 3 lines Added GO:0097752 ‘regulation of DNA stability’ needed for an EFO mapping changes in entailments ------------------------------------------------------------------------ r38352 | termgenie | 2017-01-23 10:02:41 -0800 (Mon, 23 Jan 2017) | 2 lines TermGenie commit for user: ukemi reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38352) +++ go_inferences.obo (working copy) @@ -89504,6 +89504,71 @@ is_a: GO:1905846 {is_inferred="true"} ! regulation of cellular response to oxidopamine [Term] +id: GO:1905849 ! negative regulation of forward locomotion +is_a: GO:0040013 {is_inferred="true"} ! negative regulation of locomotion +is_a: GO:0043059 {is_inferred="true"} ! regulation of forward locomotion + +[Term] +id: GO:1905850 ! positive regulation of forward locomotion +is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion +is_a: GO:0043059 {is_inferred="true"} ! regulation of forward locomotion + +[Term] +id: GO:1905851 ! negative regulation of backward locomotion +is_a: GO:0040013 {is_inferred="true"} ! negative regulation of locomotion +is_a: GO:0043058 {is_inferred="true"} ! regulation of backward locomotion + +[Term] +id: GO:1905852 ! positive regulation of backward locomotion +is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion +is_a: GO:0043058 {is_inferred="true"} ! regulation of backward locomotion + +[Term] +id: GO:1905853 ! regulation of heparan sulfate binding +is_a: GO:0051098 {is_inferred="true"} ! regulation of binding + +[Term] +id: GO:1905854 ! negative regulation of heparan sulfate binding +is_a: GO:0051100 {is_inferred="true"} ! negative regulation of binding +is_a: GO:1905853 {is_inferred="true"} ! regulation of heparan sulfate binding + +[Term] +id: GO:1905855 ! positive regulation of heparan sulfate binding +is_a: GO:0051099 {is_inferred="true"} ! positive regulation of binding +is_a: GO:1905853 {is_inferred="true"} ! regulation of heparan sulfate binding + +[Term] +id: GO:1905856 ! negative regulation of pentose-phosphate shunt +is_a: GO:0043456 {is_inferred="true"} ! regulation of pentose-phosphate shunt +is_a: GO:0045980 {is_inferred="true"} ! negative regulation of nucleotide metabolic process +is_a: GO:0051198 {is_inferred="true"} ! negative regulation of coenzyme metabolic process + +[Term] +id: GO:1905857 ! positive regulation of pentose-phosphate shunt +is_a: GO:0043456 {is_inferred="true"} ! regulation of pentose-phosphate shunt +is_a: GO:0045981 {is_inferred="true"} ! positive regulation of nucleotide metabolic process +is_a: GO:0051197 {is_inferred="true"} ! positive regulation of coenzyme metabolic process + +[Term] +id: GO:1905858 ! regulation of heparan sulfate proteoglycan binding +is_a: GO:0043393 {is_inferred="true"} ! regulation of protein binding + +[Term] +id: GO:1905859 ! negative regulation of heparan sulfate proteoglycan binding +is_a: GO:0032091 {is_inferred="true"} ! negative regulation of protein binding +is_a: GO:1905858 {is_inferred="true"} ! regulation of heparan sulfate proteoglycan binding + +[Term] +id: GO:1905860 ! positive regulation of heparan sulfate proteoglycan binding +is_a: GO:0032092 {is_inferred="true"} ! positive regulation of protein binding +is_a: GO:1905858 {is_inferred="true"} ! regulation of heparan sulfate proteoglycan binding + +[Term] +id: GO:1905861 ! intranuclear rod assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38308 | hjd | 2017-01-20 12:31:56 -0800 (Fri, 20 Jan 2017) | 2 lines fixed a dup name that slipped by me changes in entailments ------------------------------------------------------------------------ r38302 | dph | 2017-01-20 11:51:04 -0800 (Fri, 20 Jan 2017) | 2 lines GH12932-closed changes in entailments ------------------------------------------------------------------------ r38300 | dph | 2017-01-20 09:48:08 -0800 (Fri, 20 Jan 2017) | 2 lines Very large and weird diff, but just made a single change to a logical def. GH12922-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38300) +++ go_inferences.obo (working copy) @@ -4745,10 +4745,6 @@ is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] -id: GO:0005315 ! inorganic phosphate transmembrane transporter activity -is_a: GO:1901677 {is_inferred="true"} ! phosphate transmembrane transporter activity - -[Term] id: GO:0005324 ! long-chain fatty acid transporter activity is_a: GO:0015245 {is_inferred="true"} ! fatty acid transporter activity @@ -13958,6 +13954,10 @@ is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity [Term] +id: GO:0015114 ! phosphate ion transmembrane transporter activity +is_a: GO:1901677 {is_inferred="true"} ! phosphate transmembrane transporter activity + +[Term] id: GO:0015116 ! sulfate transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity @@ -14454,10 +14454,6 @@ is_a: GO:0015665 {is_inferred="true"} ! alcohol transmembrane transporter activity [Term] -id: GO:0015317 ! phosphate:proton symporter activity -is_a: GO:1901677 {is_inferred="true"} ! phosphate transmembrane transporter activity - -[Term] id: GO:0015325 ! acetyl-CoA:CoA antiporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity @@ -14722,7 +14718,7 @@ [Term] id: GO:0015605 ! organophosphate ester transmembrane transporter activity -is_a: GO:1901677 {is_inferred="true"} ! phosphate transmembrane transporter activity +is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity [Term] id: GO:0015606 ! spermidine transmembrane transporter activity ------------------------------------------------------------------------ r38298 | paola | 2017-01-20 08:41:28 -0800 (Fri, 20 Jan 2017) | 2 lines Fixing more errors changes in entailments ------------------------------------------------------------------------ r38294 | davidos | 2017-01-20 07:48:31 -0800 (Fri, 20 Jan 2017) | 1 line More ViralZone terms (#11426). Changed colonial development to (#12357). Fixed duplicated po/is_a edges on establishment of protein localization resulting from pro-chebi protein equivalence axioms. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38294) +++ go_inferences.obo (working copy) @@ -58778,6 +58778,10 @@ is_a: GO:0098956 {is_inferred="true"} ! intrinsic component of dense core granule membrane [Term] +id: GO:0098676 ! modulation of host virulence by virus +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell ------------------------------------------------------------------------ r38292 | paola | 2017-01-20 07:20:59 -0800 (Fri, 20 Jan 2017) | 2 lines GH parentage: GO:0039702 viral budding via host ESCRT complex #12254 - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38292) +++ go_inferences.obo (working copy) @@ -90228,9 +90228,10 @@ is_a: GO:0045016 {is_inferred="true"} ! mitochondrial magnesium ion transport [Term] -id: GO:1990621 ! Vps4-Vta1 complex +id: GO:1990621 ! ESCRT IV complex is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex +is_a: GO:1904949 {is_inferred="true"} ! ATPase complex [Term] id: GO:1990629 ! phospholamban complex ------------------------------------------------------------------------ r38290 | paola | 2017-01-20 07:03:19 -0800 (Fri, 20 Jan 2017) | 2 lines GH Difference between GO:0070840 and GO:0045502 #12133 - work in progress - merged 'dynein binding' into 'dynein complex binding' changes in entailments ------------------------------------------------------------------------ r38288 | paola | 2017-01-20 06:41:53 -0800 (Fri, 20 Jan 2017) | 2 lines GH Difference between GO:0070840 and GO:0045502 #12133 - work in progress - see ticket changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38288) +++ go_inferences.obo (working copy) @@ -89462,11 +89462,11 @@ [Term] id: GO:1905841 ! response to oxidopamine -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0071869 {is_inferred="true"} ! response to catecholamine [Term] id: GO:1905842 ! cellular response to oxidopamine -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071870 {is_inferred="true"} ! cellular response to catecholamine stimulus is_a: GO:1905841 {is_inferred="true"} ! response to oxidopamine [Term] ------------------------------------------------------------------------ r38277 | hjd | 2017-01-19 12:00:34 -0800 (Thu, 19 Jan 2017) | 2 lines removed synonym from stress granuale and added synonym for Flemming body (GH:12945) changes in entailments ------------------------------------------------------------------------ r38267 | paola | 2017-01-19 08:03:20 -0800 (Thu, 19 Jan 2017) | 2 lines Removed odd remark line changes in entailments ------------------------------------------------------------------------ r38264 | termgenie | 2017-01-19 05:40:43 -0800 (Thu, 19 Jan 2017) | 4 lines TermGenie commit for user: rozaru reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38264) +++ go_inferences.obo (working copy) @@ -85889,6 +85889,7 @@ id: GO:1905092 ! response to diosgenin is_a: GO:0036314 {is_inferred="true"} ! response to sterol is_a: GO:0097305 {is_inferred="true"} ! response to alcohol +is_a: GO:1905836 {is_inferred="true"} ! response to triterpenoid [Term] id: GO:1905093 ! cellular response to diosgenin @@ -85895,6 +85896,7 @@ is_a: GO:0036315 {is_inferred="true"} ! cellular response to sterol is_a: GO:0097306 {is_inferred="true"} ! cellular response to alcohol is_a: GO:1905092 {is_inferred="true"} ! response to diosgenin +is_a: GO:1905837 {is_inferred="true"} ! cellular response to triterpenoid [Term] id: GO:1905094 ! regulation of apolipoprotein A-I-mediated signaling pathway @@ -89422,6 +89424,43 @@ is_a: GO:0031115 {is_inferred="true"} ! negative regulation of microtubule polymerization [Term] +id: GO:1905834 ! response to pyrimidine ribonucleotide +is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0046683 {is_inferred="true"} ! response to organophosphorus +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound + +[Term] +id: GO:1905835 ! cellular response to pyrimidine ribonucleotide +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:1905834 {is_inferred="true"} ! response to pyrimidine ribonucleotide + +[Term] +id: GO:1905836 ! response to triterpenoid +is_a: GO:0033993 {is_inferred="true"} ! response to lipid + +[Term] +id: GO:1905837 ! cellular response to triterpenoid +is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid +is_a: GO:1905836 {is_inferred="true"} ! response to triterpenoid + +[Term] +id: GO:1905838 ! regulation of telomeric D-loop disassembly +is_a: GO:1904533 {is_inferred="true"} ! regulation of telomeric loop disassembly + +[Term] +id: GO:1905839 ! negative regulation of telomeric D-loop disassembly +is_a: GO:1904534 {is_inferred="true"} ! negative regulation of telomeric loop disassembly +is_a: GO:1905838 {is_inferred="true"} ! regulation of telomeric D-loop disassembly + +[Term] +id: GO:1905840 ! positive regulation of telomeric D-loop disassembly +is_a: GO:1904535 {is_inferred="true"} ! positive regulation of telomeric loop disassembly +is_a: GO:1905838 {is_inferred="true"} ! regulation of telomeric D-loop disassembly + +[Term] id: GO:1905841 ! response to oxidopamine is_a: GO:0050896 {is_inferred="true"} ! response to stimulus @@ -89431,6 +89470,40 @@ is_a: GO:1905841 {is_inferred="true"} ! response to oxidopamine [Term] +id: GO:1905843 ! regulation of cellular response to gamma radiation +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process +is_a: GO:2001228 {is_inferred="true"} ! regulation of response to gamma radiation + +[Term] +id: GO:1905844 ! negative regulation of cellular response to gamma radiation +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:1905843 {is_inferred="true"} ! regulation of cellular response to gamma radiation +is_a: GO:2001229 {is_inferred="true"} ! negative regulation of response to gamma radiation + +[Term] +id: GO:1905845 ! positive regulation of cellular response to gamma radiation +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:1905843 {is_inferred="true"} ! regulation of cellular response to gamma radiation +is_a: GO:2001230 {is_inferred="true"} ! positive regulation of response to gamma radiation + +[Term] +id: GO:1905846 ! regulation of cellular response to oxidopamine +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process + +[Term] +id: GO:1905847 ! negative regulation of cellular response to oxidopamine +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905846 {is_inferred="true"} ! regulation of cellular response to oxidopamine + +[Term] +id: GO:1905848 ! positive regulation of cellular response to oxidopamine +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905846 {is_inferred="true"} ! regulation of cellular response to oxidopamine + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38258 | paola | 2017-01-19 04:12:04 -0800 (Thu, 19 Jan 2017) | 2 lines For autophagy project: changed scope of some synonyms of 'autophagosome membrane disassembly' changes in entailments ------------------------------------------------------------------------ r38256 | termgenie | 2017-01-19 01:53:14 -0800 (Thu, 19 Jan 2017) | 3 lines TermGenie commit for user: paolaroncaglia reviewed by paolaroncaglia changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38256) +++ go_inferences.obo (working copy) @@ -89422,6 +89422,15 @@ is_a: GO:0031115 {is_inferred="true"} ! negative regulation of microtubule polymerization [Term] +id: GO:1905841 ! response to oxidopamine +is_a: GO:0050896 {is_inferred="true"} ! response to stimulus + +[Term] +id: GO:1905842 ! cellular response to oxidopamine +is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:1905841 {is_inferred="true"} ! response to oxidopamine + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38234 | dph | 2017-01-18 13:41:56 -0800 (Wed, 18 Jan 2017) | 2 lines GH12930-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38234) +++ go_inferences.obo (working copy) @@ -49262,6 +49262,10 @@ is_a: GO:0035973 {is_inferred="true"} ! aggrephagy [Term] +id: GO:0061833 ! protein localization to tricellular tight junction +is_a: GO:1902414 {is_inferred="true"} ! protein localization to cell junction + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r38231 | dph | 2017-01-18 13:26:56 -0800 (Wed, 18 Jan 2017) | 2 lines GH11908-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38231) +++ go_inferences.obo (working copy) @@ -6933,7 +6933,6 @@ id: GO:0006612 ! protein targeting to membrane is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0006622 ! protein targeting to lysosome @@ -43586,6 +43585,7 @@ [Term] id: GO:0051204 ! protein insertion into mitochondrial membrane is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:0051206 ! silicate metabolic process @@ -54469,15 +54469,16 @@ is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein [Term] -id: GO:0072657 ! protein localization to membrane -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization - -[Term] id: GO:0072659 ! protein localization to plasma membrane is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] +id: GO:0072661 ! protein targeting to plasma membrane +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0072662 ! protein localization to peroxisome is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle @@ -56436,6 +56437,7 @@ id: GO:0090151 ! establishment of protein localization to mitochondrial membrane is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:0090152 ! establishment of protein localization to mitochondrial membrane involved in mitochondrial fission @@ -59230,7 +59232,6 @@ [Term] id: GO:0098877 ! neurotransmitter receptor transport to plasma membrane -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery @@ -76208,6 +76209,7 @@ [Term] id: GO:1903077 ! negative regulation of protein localization to plasma membrane +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane is_a: GO:1904376 {is_inferred="true"} ! negative regulation of protein localization to cell periphery is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane @@ -76214,6 +76216,7 @@ [Term] id: GO:1903078 ! positive regulation of protein localization to plasma membrane +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane is_a: GO:1904377 {is_inferred="true"} ! positive regulation of protein localization to cell periphery is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane @@ -87719,18 +87722,15 @@ [Term] id: GO:1905475 ! regulation of protein localization to membrane -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] id: GO:1905476 ! negative regulation of protein localization to membrane -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1905477 ! positive regulation of protein localization to membrane -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane ------------------------------------------------------------------------ r38229 | dph | 2017-01-18 13:09:07 -0800 (Wed, 18 Jan 2017) | 2 lines One last tweak to the logical definition of a regulation of mitophagy term. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38229) +++ go_inferences.obo (working copy) @@ -58977,7 +58977,7 @@ [Term] id: GO:0098779 ! positive regulation of macromitophagy in response to mitochondrial depolarization is_a: GO:1901526 {is_inferred="true"} ! positive regulation of macromitophagy -is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:1904925 {is_inferred="true"} ! positive regulation of mitophagy in response to mitochondrial depolarization [Term] id: GO:0098781 ! ncRNA transcription @@ -85052,10 +85052,8 @@ [Term] id: GO:1904925 ! positive regulation of mitophagy in response to mitochondrial depolarization -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress -is_a: GO:1901524 {is_inferred="true"} ! regulation of macromitophagy +is_a: GO:1903599 {is_inferred="true"} ! positive regulation of mitophagy +is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization [Term] id: GO:1904926 ! response to palmitoleic acid @@ -85876,7 +85874,8 @@ [Term] id: GO:1905091 ! positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization -is_a: GO:1904925 {is_inferred="true"} ! positive regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization [Term] ------------------------------------------------------------------------ r38227 | dph | 2017-01-18 12:57:42 -0800 (Wed, 18 Jan 2017) | 2 lines Fixed duplicate name by replacing mitophagy with macromitophagy. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38227) +++ go_inferences.obo (working copy) @@ -27611,6 +27611,11 @@ is_a: GO:0051346 {is_inferred="true"} ! negative regulation of hydrolase activity [Term] +id: GO:0034263 ! positive regulation of autophagy in response to ER overload +is_a: GO:0006983 {is_inferred="true"} ! ER overload response +is_a: GO:0010508 {is_inferred="true"} ! positive regulation of autophagy + +[Term] id: GO:0034264 ! isopentenyl adenine metabolic process is_a: GO:0072521 {is_inferred="true"} ! purine-containing compound metabolic process @@ -58970,6 +58975,11 @@ is_a: GO:0098776 {is_inferred="true"} ! protein transport across the cell outer membrane [Term] +id: GO:0098779 ! positive regulation of macromitophagy in response to mitochondrial depolarization +is_a: GO:1901526 {is_inferred="true"} ! positive regulation of macromitophagy +is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization + +[Term] id: GO:0098781 ! ncRNA transcription is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process @@ -85030,20 +85040,22 @@ [Term] id: GO:1904923 ! regulation of mitophagy in response to mitochondrial depolarization -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress -is_a: GO:1901524 {is_inferred="true"} ! regulation of macromitophagy +is_a: GO:0098780 {is_inferred="true"} ! response to mitochondrial depolarisation +is_a: GO:1903146 {is_inferred="true"} ! regulation of mitophagy [Term] id: GO:1904924 ! negative regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus -is_a: GO:1901525 {is_inferred="true"} ! negative regulation of macromitophagy -is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1901524 {is_inferred="true"} ! regulation of macromitophagy [Term] id: GO:1904925 ! positive regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus -is_a: GO:1901526 {is_inferred="true"} ! positive regulation of macromitophagy -is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1901524 {is_inferred="true"} ! regulation of macromitophagy [Term] id: GO:1904926 ! response to palmitoleic acid @@ -85853,18 +85865,19 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] -id: GO:1905089 ! regulation of parkin-mediated mitophagy in response to mitochondrial depolarization -is_a: GO:1904923 {is_inferred="true"} ! regulation of mitophagy in response to mitochondrial depolarization +id: GO:1905089 ! regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress +is_a: GO:1901524 {is_inferred="true"} ! regulation of macromitophagy [Term] -id: GO:1905090 ! negative regulation of parkin-mediated mitophagy in response to mitochondrial depolarization +id: GO:1905090 ! negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization is_a: GO:1904924 {is_inferred="true"} ! negative regulation of mitophagy in response to mitochondrial depolarization -is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated mitophagy in response to mitochondrial depolarization +is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization [Term] -id: GO:1905091 ! positive regulation of parkin-mediated mitophagy in response to mitochondrial depolarization +id: GO:1905091 ! positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization is_a: GO:1904925 {is_inferred="true"} ! positive regulation of mitophagy in response to mitochondrial depolarization -is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated mitophagy in response to mitochondrial depolarization +is_a: GO:1905089 {is_inferred="true"} ! regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization [Term] id: GO:1905092 ! response to diosgenin ------------------------------------------------------------------------ r38223 | dph | 2017-01-18 10:21:52 -0800 (Wed, 18 Jan 2017) | 2 lines GH12928-closed changes in entailments ------------------------------------------------------------------------ r38221 | dph | 2017-01-18 10:12:15 -0800 (Wed, 18 Jan 2017) | 2 lines GH12927-closed changes in entailments ------------------------------------------------------------------------ r38219 | dph | 2017-01-18 09:31:40 -0800 (Wed, 18 Jan 2017) | 2 lines GH12939-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38219) +++ go_inferences.obo (working copy) @@ -84378,19 +84378,19 @@ is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process [Term] -id: GO:1904790 ! regulation of telosome assembly +id: GO:1904790 ! regulation of shelterin complex assembly is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis [Term] -id: GO:1904791 ! negative regulation of telosome assembly -is_a: GO:1904790 {is_inferred="true"} ! regulation of telosome assembly +id: GO:1904791 ! negative regulation of shelterin complex assembly +is_a: GO:1904790 {is_inferred="true"} ! regulation of shelterin complex assembly is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] -id: GO:1904792 ! positive regulation of telosome assembly +id: GO:1904792 ! positive regulation of shelterin complex assembly is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:1904790 {is_inferred="true"} ! regulation of telosome assembly +is_a: GO:1904790 {is_inferred="true"} ! regulation of shelterin complex assembly is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] ------------------------------------------------------------------------ r38215 | dph | 2017-01-18 09:18:49 -0800 (Wed, 18 Jan 2017) | 2 lines GH12940-closed and GH12938-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38215) +++ go_inferences.obo (working copy) @@ -84379,19 +84379,19 @@ [Term] id: GO:1904790 ! regulation of telosome assembly +is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1904791 ! negative regulation of telosome assembly -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1904790 {is_inferred="true"} ! regulation of telosome assembly +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:1904792 ! positive regulation of telosome assembly is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1904790 {is_inferred="true"} ! regulation of telosome assembly +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1904793 ! regulation of euchromatin binding ------------------------------------------------------------------------ r38131 | davidos | 2017-01-18 05:09:34 -0800 (Wed, 18 Jan 2017) | 14 lines All edits are work described in or resulting from #12341 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38131) +++ go_inferences.obo (working copy) @@ -26,6 +26,14 @@ is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property [Term] +id: CHEBI:17843 ! transfer RNA +is_a: SO:0000655 {is_inferred="true"} ! ncRNA + +[Term] +id: CHEBI:18111 ! ribosomal RNA +is_a: SO:0000655 {is_inferred="true"} ! ncRNA + +[Term] id: CHEBI:18157 ! aerobactin is_a: GOCHE:24028 {is_inferred="true"} ! substance with iron(3+) chelator role @@ -58,6 +66,10 @@ is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property [Term] +id: CHEBI:29264 ! tRNA(Sec) +is_a: SO:0000253 {is_inferred="true"} ! tRNA + +[Term] id: CHEBI:29669 ! pyochelin is_a: GOCHE:24028 {is_inferred="true"} ! substance with iron(3+) chelator role @@ -66,6 +78,10 @@ is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property [Term] +id: CHEBI:33699 ! messenger RNA +is_a: SO:0000233 {is_inferred="true"} ! mature_transcript + +[Term] id: CHEBI:33837 ! conjugated protein is_a: PR:000000001 {is_inferred="true"} ! protein @@ -560,6 +576,10 @@ is_a: GO:0046872 {is_inferred="true"} ! metal ion binding [Term] +id: GO:0000292 ! RNA fragment catabolic process +is_a: GO:0006401 {is_inferred="true"} ! RNA catabolic process + +[Term] id: GO:0000295 ! adenine nucleotide transmembrane transporter activity is_a: GO:0015216 {is_inferred="true"} ! purine nucleotide transmembrane transporter activity @@ -6441,6 +6461,11 @@ is_a: GO:0006355 {is_inferred="true"} ! regulation of transcription, DNA-templated [Term] +id: GO:0006379 ! mRNA cleavage +is_a: GO:0016071 {is_inferred="true"} ! mRNA metabolic process +is_a: GO:0090501 {is_inferred="true"} ! RNA phosphodiester bond hydrolysis + +[Term] id: GO:0006390 ! transcription from mitochondrial promoter is_a: GO:0000959 {is_inferred="true"} ! mitochondrial RNA metabolic process is_a: GO:0006351 {is_inferred="true"} ! transcription, DNA-templated @@ -6459,6 +6484,10 @@ is_a: GO:0006353 {is_inferred="true"} ! DNA-templated transcription, termination [Term] +id: GO:0006399 ! tRNA metabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] id: GO:0006401 ! RNA catabolic process is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process is_a: GO:0034655 {is_inferred="true"} ! nucleobase-containing compound catabolic process @@ -9778,6 +9807,7 @@ [Term] id: GO:0009303 ! rRNA transcription +is_a: GO:0016072 {is_inferred="true"} ! rRNA metabolic process is_a: GO:0098781 {is_inferred="true"} ! ncRNA transcription [Term] @@ -11908,6 +11938,10 @@ is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] +id: GO:0010587 ! miRNA catabolic process +is_a: GO:0010586 {is_inferred="true"} ! miRNA metabolic process + +[Term] id: GO:0010588 ! cotyledon vascular tissue pattern formation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process @@ -16042,12 +16076,36 @@ is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process [Term] +id: GO:0016072 ! rRNA metabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] +id: GO:0016073 ! snRNA metabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] +id: GO:0016074 ! snoRNA metabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] id: GO:0016075 ! rRNA catabolic process is_a: GO:0016072 {is_inferred="true"} ! rRNA metabolic process +is_a: GO:0034661 {is_inferred="true"} ! ncRNA catabolic process [Term] +id: GO:0016076 ! snRNA catabolic process +is_a: GO:0016073 {is_inferred="true"} ! snRNA metabolic process +is_a: GO:0034661 {is_inferred="true"} ! ncRNA catabolic process + +[Term] +id: GO:0016077 ! snoRNA catabolic process +is_a: GO:0016074 {is_inferred="true"} ! snoRNA metabolic process +is_a: GO:0034661 {is_inferred="true"} ! ncRNA catabolic process + +[Term] id: GO:0016078 ! tRNA catabolic process is_a: GO:0006399 {is_inferred="true"} ! tRNA metabolic process +is_a: GO:0034661 {is_inferred="true"} ! ncRNA catabolic process [Term] id: GO:0016079 ! synaptic vesicle exocytosis @@ -16520,6 +16578,10 @@ is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] +id: GO:0016556 ! mRNA modification +is_a: GO:0016071 {is_inferred="true"} ! mRNA metabolic process + +[Term] id: GO:0016557 ! peroxisome membrane biogenesis is_a: GO:0044091 {is_inferred="true"} ! membrane biogenesis @@ -28089,6 +28151,15 @@ is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] +id: GO:0034660 ! ncRNA metabolic process +is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process + +[Term] +id: GO:0034661 ! ncRNA catabolic process +is_a: GO:0006401 {is_inferred="true"} ! RNA catabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] id: GO:0034662 ! CFTR-NHERF-ezrin complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -30544,6 +30615,11 @@ is_a: GO:0061062 {is_inferred="true"} ! regulation of nematode larval development [Term] +id: GO:0040031 ! snRNA modification +is_a: GO:0009451 {is_inferred="true"} ! RNA modification +is_a: GO:0016073 {is_inferred="true"} ! snRNA metabolic process + +[Term] id: GO:0040035 ! hermaphrodite genitalia development is_a: GO:0008406 {is_inferred="true"} ! gonad development @@ -32409,6 +32485,10 @@ is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] +id: GO:0042868 ! antisense RNA metabolic process +is_a: GO:0034660 {is_inferred="true"} ! ncRNA metabolic process + +[Term] id: GO:0042869 ! aldarate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0008643 {is_inferred="true"} ! carbohydrate transport @@ -32759,7 +32839,6 @@ is_a: GO:0006893 {is_inferred="true"} ! Golgi to plasma membrane transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane [Term] @@ -34821,7 +34900,8 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0044743 ! intracellular protein transmembrane import +id: GO:0044743 ! protein transmembrane import into intracellular organelle +is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -34990,14 +35070,12 @@ [Term] id: GO:0044861 ! protein transport into plasma membrane raft is_a: GO:0044860 {is_inferred="true"} ! protein localization to plasma membrane raft -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane -is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane [Term] id: GO:0044862 ! protein transport out of plasma membrane raft -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane -is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:0099632 {is_inferred="true"} ! protein transport within plasma membrane +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0044866 ! modulation by host of viral exo-alpha-sialidase activity @@ -35053,7 +35131,12 @@ is_a: GO:0006605 {is_inferred="true"} ! protein targeting [Term] +id: GO:0045037 ! protein import into chloroplast stroma +is_a: GO:0044743 {is_inferred="true"} ! protein transmembrane import into intracellular organelle + +[Term] id: GO:0045039 ! protein import into mitochondrial inner membrane +is_a: GO:0044743 {is_inferred="true"} ! protein transmembrane import into intracellular organelle is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -50192,6 +50275,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0070525 ! tRNA threonylcarbamoyladenosine metabolic process +is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process + +[Term] id: GO:0070538 ! oleic acid binding is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding @@ -54386,10 +54473,6 @@ is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] -id: GO:0072661 ! protein targeting to plasma membrane -is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane - -[Term] id: GO:0072662 ! protein localization to peroxisome is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle @@ -55901,7 +55984,7 @@ [Term] id: GO:0090002 ! establishment of protein localization to plasma membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery +is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane [Term] id: GO:0090003 ! regulation of establishment of protein localization to plasma membrane @@ -58834,7 +58917,7 @@ [Term] id: GO:0098737 ! protein insertion into plasma membrane -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0098739 ! import across plasma membrane @@ -58964,6 +59047,10 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:0098808 ! mRNA cap binding +is_a: GO:0003729 {is_inferred="true"} ! mRNA binding + +[Term] id: GO:0098810 ! neurotransmitter reuptake is_a: GO:0001504 {is_inferred="true"} ! neurotransmitter uptake is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -58974,6 +59061,7 @@ [Term] id: GO:0098812 ! nuclear rRNA polyadenylation involved in polyadenylation-dependent rRNA catabolic process +is_a: GO:0016072 {is_inferred="true"} ! rRNA metabolic process is_a: GO:0043630 {is_inferred="true"} ! ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process [Term] @@ -59133,8 +59221,9 @@ [Term] id: GO:0098877 ! neurotransmitter receptor transport to plasma membrane is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0098878 ! neurotransmitter receptor complex @@ -60379,7 +60468,6 @@ id: GO:0099638 ! endosome to plasma membrane protein transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane is_a: GO:1990126 {is_inferred="true"} ! retrograde transport, endosome to plasma membrane @@ -77823,7 +77911,6 @@ [Term] id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane is_a: GO:0032594 {is_inferred="true"} ! protein transport within lipid bilayer -is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane [Term] id: GO:1903446 ! geraniol metabolic process @@ -78253,7 +78340,7 @@ [Term] id: GO:1903540 ! establishment of protein localization to postsynaptic membrane -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:1903539 {is_inferred="true"} ! protein localization to postsynaptic membrane [Term] @@ -88244,16 +88331,16 @@ [Term] id: GO:1905610 ! regulation of mRNA cap binding -is_a: GO:1905214 {is_inferred="true"} ! regulation of RNA binding +is_a: GO:1902415 {is_inferred="true"} ! regulation of mRNA binding [Term] id: GO:1905611 ! negative regulation of mRNA cap binding -is_a: GO:1905215 {is_inferred="true"} ! negative regulation of RNA binding +is_a: GO:1904572 {is_inferred="true"} ! negative regulation of mRNA binding is_a: GO:1905610 {is_inferred="true"} ! regulation of mRNA cap binding [Term] id: GO:1905612 ! positive regulation of mRNA cap binding -is_a: GO:1905216 {is_inferred="true"} ! positive regulation of RNA binding +is_a: GO:1902416 {is_inferred="true"} ! positive regulation of mRNA binding is_a: GO:1905610 {is_inferred="true"} ! regulation of mRNA cap binding [Term] ------------------------------------------------------------------------ r38126 | davidos | 2017-01-18 02:30:19 -0800 (Wed, 18 Jan 2017) | 1 line Fixed non ascii char (was typo anyway). changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38129) +++ go_inferences.obo (working copy) @@ -30496,7 +30496,9 @@ [Term] id: GO:0039699 ! viral mRNA cap methylation +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0044033 {is_inferred="true"} ! multi-organism metabolic process +is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound [Term] id: GO:0040001 ! establishment of mitotic spindle localization @@ -69079,6 +69081,11 @@ is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity [Term] +id: GO:1901619 ! tRNA methylation in response to nitrogen starvation +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound + +[Term] id: GO:1901620 ! regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning is_a: GO:0008589 {is_inferred="true"} ! regulation of smoothened signaling pathway is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development @@ -96780,7 +96787,6 @@ [Term] id: PR:000000001 ! protein -is_a: BFO:0000004 {is_inferred="true"} is_a: CHEBI:33695 {is_inferred="true"} ! information biomacromolecule [Term] ------------------------------------------------------------------------ r38126 | davidos | 2017-01-18 02:30:19 -0800 (Wed, 18 Jan 2017) | 1 line Fixed non ascii char (was typo anyway). changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38126) +++ go_inferences.obo (working copy) @@ -2,6 +2,14 @@ ontology: go/extensions/go_inferences [Term] +id: CHEBI:13534 ! acyl-carrier protein +is_a: PR:000000001 {is_inferred="true"} ! protein + +[Term] +id: CHEBI:15358 ! histone +is_a: PR:000000001 {is_inferred="true"} ! protein + +[Term] id: CHEBI:15377 ! water is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property @@ -58,10 +66,22 @@ is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property [Term] +id: CHEBI:33837 ! conjugated protein +is_a: PR:000000001 {is_inferred="true"} ! protein + +[Term] +id: CHEBI:36080 ! protein +is_a: PR:000018263 {is_inferred="true"} ! amino acid chain + +[Term] id: CHEBI:38150 ! enterobactin(6-) is_a: GOCHE:24028 {is_inferred="true"} ! substance with iron(3+) chelator role [Term] +id: CHEBI:38560 ! simple protein +is_a: PR:000000001 {is_inferred="true"} ! protein + +[Term] id: CHEBI:41189 ! butane-1,4-diol is_a: GOCHE:37527 {is_inferred="true"} ! substance with acid chemical property @@ -159,7 +179,6 @@ [Term] id: GO:0000042 ! protein targeting to Golgi is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0034067 {is_inferred="true"} ! protein localization to Golgi apparatus [Term] id: GO:0000045 ! autophagosome assembly @@ -6524,6 +6543,7 @@ [Term] id: GO:0006516 ! glycoprotein catabolic process is_a: GO:0009100 {is_inferred="true"} ! glycoprotein metabolic process +is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process is_a: GO:1901136 {is_inferred="true"} ! carbohydrate derivative catabolic process [Term] @@ -6883,7 +6903,6 @@ [Term] id: GO:0006612 ! protein targeting to membrane is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -6896,7 +6915,6 @@ [Term] id: GO:0006623 ! protein targeting to vacuole is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0072665 {is_inferred="true"} ! protein localization to vacuole [Term] id: GO:0006624 ! vacuolar protein processing @@ -6906,13 +6924,11 @@ id: GO:0006625 ! protein targeting to peroxisome is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0043574 {is_inferred="true"} ! peroxisomal transport -is_a: GO:0072662 {is_inferred="true"} ! protein localization to peroxisome [Term] id: GO:0006626 ! protein targeting to mitochondrion is_a: GO:0006605 {is_inferred="true"} ! protein targeting is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport -is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion [Term] id: GO:0006631 ! fatty acid metabolic process @@ -8933,6 +8949,7 @@ [Term] id: GO:0009100 ! glycoprotein metabolic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] @@ -16013,6 +16030,7 @@ [Term] id: GO:0016063 ! rhodopsin biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] @@ -19208,9 +19226,12 @@ is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] +id: GO:0020027 ! hemoglobin metabolic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process + +[Term] id: GO:0020028 ! hemoglobin import -is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0017038 {is_inferred="true"} ! protein import [Term] id: GO:0020037 ! heme binding @@ -19787,7 +19808,6 @@ [Term] id: GO:0030150 ! protein import into mitochondrial matrix -is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -20181,7 +20201,7 @@ [Term] id: GO:0030492 ! hemoglobin binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0005515 {is_inferred="true"} ! protein binding [Term] id: GO:0030493 ! bacteriochlorophyll metabolic process @@ -27339,6 +27359,10 @@ is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division [Term] +id: GO:0034189 ! very-low-density lipoprotein particle binding +is_a: GO:0005515 {is_inferred="true"} ! protein binding + +[Term] id: GO:0034192 ! D-galactonate metabolic process is_a: GO:0019583 {is_inferred="true"} ! galactonate metabolic process @@ -27792,11 +27816,12 @@ [Term] id: GO:0034436 ! glycoprotein transport -is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization +is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] id: GO:0034437 ! glycoprotein transporter activity +is_a: GO:0008565 {is_inferred="true"} ! protein transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] @@ -29107,6 +29132,7 @@ [Term] id: GO:0035592 ! establishment of protein localization to extracellular region +is_a: GO:0071692 {is_inferred="true"} ! protein localization to extracellular region is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] @@ -30600,15 +30626,15 @@ [Term] id: GO:0042091 ! interleukin-10 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042094 ! interleukin-2 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042097 ! interleukin-4 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042101 ! T cell receptor complex @@ -30639,7 +30665,7 @@ [Term] id: GO:0042109 ! lymphotoxin A biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042119 ! neutrophil activation @@ -30691,7 +30717,7 @@ [Term] id: GO:0042157 ! lipoprotein metabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process [Term] id: GO:0042158 ! lipoprotein biosynthetic process @@ -30699,7 +30725,7 @@ [Term] id: GO:0042159 ! lipoprotein catabolic process -is_a: GO:0009057 {is_inferred="true"} ! macromolecule catabolic process +is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process is_a: GO:0042157 {is_inferred="true"} ! lipoprotein metabolic process [Term] @@ -30950,71 +30976,71 @@ [Term] id: GO:0042222 ! interleukin-1 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042223 ! interleukin-3 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042225 ! interleukin-5 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042226 ! interleukin-6 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042227 ! interleukin-7 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042228 ! interleukin-8 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042229 ! interleukin-9 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042230 ! interleukin-11 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042231 ! interleukin-13 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042233 ! interleukin-15 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042234 ! interleukin-16 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042235 ! interleukin-17 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042236 ! interleukin-19 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042237 ! interleukin-20 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042238 ! interleukin-21 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042239 ! interleukin-22 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042241 ! interleukin-18 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042243 ! asexual spore wall assembly @@ -31026,7 +31052,7 @@ [Term] id: GO:0042253 ! granulocyte macrophage colony-stimulating factor biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0042255 ! ribosome assembly @@ -31720,6 +31746,7 @@ [Term] id: GO:0042540 ! hemoglobin catabolic process is_a: GO:0020027 {is_inferred="true"} ! hemoglobin metabolic process +is_a: GO:0030163 {is_inferred="true"} ! protein catabolic process [Term] id: GO:0042541 ! hemoglobin biosynthetic process @@ -32626,13 +32653,12 @@ [Term] id: GO:0042953 ! lipoprotein transport +is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044872 {is_inferred="true"} ! lipoprotein localization -is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] id: GO:0042954 ! lipoprotein transporter activity -is_a: GO:0005215 {is_inferred="true"} ! transporter activity +is_a: GO:0008565 {is_inferred="true"} ! protein transporter activity [Term] id: GO:0042955 ! dextrin transport @@ -32651,6 +32677,18 @@ is_a: GO:0015159 {is_inferred="true"} ! polysaccharide transmembrane transporter activity [Term] +id: GO:0042964 ! thioredoxin biosynthetic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process + +[Term] +id: GO:0042965 ! glutaredoxin biosynthetic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process + +[Term] +id: GO:0042967 ! acyl-carrier-protein biosynthetic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process + +[Term] id: GO:0042968 ! homoserine transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport @@ -32668,21 +32706,15 @@ [Term] id: GO:0042983 ! amyloid precursor protein biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] -id: GO:0042984 ! regulation of amyloid precursor protein biosynthetic process -is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process - -[Term] id: GO:0042985 ! negative regulation of amyloid precursor protein biosynthetic process is_a: GO:0042984 {is_inferred="true"} ! regulation of amyloid precursor protein biosynthetic process -is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process [Term] id: GO:0042986 ! positive regulation of amyloid precursor protein biosynthetic process is_a: GO:0042984 {is_inferred="true"} ! regulation of amyloid precursor protein biosynthetic process -is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process [Term] id: GO:0042990 ! regulation of transcription factor import into nucleus @@ -34945,6 +34977,7 @@ [Term] id: GO:0044859 ! protein insertion into plasma membrane raft +is_a: GO:0044860 {is_inferred="true"} ! protein localization to plasma membrane raft is_a: GO:0071210 {is_inferred="true"} ! protein insertion into membrane raft is_a: GO:0098737 {is_inferred="true"} ! protein insertion into plasma membrane @@ -34960,11 +34993,9 @@ [Term] id: GO:0044862 ! protein transport out of plasma membrane raft -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane is_a: GO:0099632 {is_inferred="true"} ! protein transport within plasma membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0044866 ! modulation by host of viral exo-alpha-sialidase activity @@ -34983,6 +35014,14 @@ is_a: GO:1903019 {is_inferred="true"} ! negative regulation of glycoprotein metabolic process [Term] +id: GO:0044872 ! lipoprotein localization +is_a: GO:0008104 {is_inferred="true"} ! protein localization + +[Term] +id: GO:0044873 ! lipoprotein localization to membrane +is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane + +[Term] id: GO:0044874 ! lipoprotein localization to outer membrane is_a: GO:0044873 {is_inferred="true"} ! lipoprotein localization to membrane @@ -35010,25 +35049,19 @@ [Term] id: GO:0045036 ! protein targeting to chloroplast is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0072598 {is_inferred="true"} ! protein localization to chloroplast [Term] id: GO:0045039 ! protein import into mitochondrial inner membrane -is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0045040 ! protein import into mitochondrial outer membrane -is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090151 {is_inferred="true"} ! establishment of protein localization to mitochondrial membrane is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0045041 ! protein import into mitochondrial intermembrane space -is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -35040,7 +35073,6 @@ [Term] id: GO:0045047 ! protein targeting to ER is_a: GO:0006605 {is_inferred="true"} ! protein targeting -is_a: GO:0070972 {is_inferred="true"} ! protein localization to endoplasmic reticulum [Term] id: GO:0045069 ! regulation of viral genome replication @@ -35248,6 +35280,10 @@ is_a: GO:0007267 {is_inferred="true"} ! cell-cell signaling [Term] +id: GO:0045184 ! establishment of protein localization +is_a: GO:0008104 {is_inferred="true"} ! protein localization + +[Term] id: GO:0045186 ! zonula adherens assembly is_a: GO:0007043 {is_inferred="true"} ! cell-cell junction assembly is_a: GO:0034333 {is_inferred="true"} ! adherens junction assembly @@ -35254,7 +35290,7 @@ [Term] id: GO:0045189 ! connective tissue growth factor biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0045190 ! isotype switching @@ -35291,25 +35327,18 @@ is_a: GO:0045219 {is_inferred="true"} ! regulation of FasL biosynthetic process [Term] -id: GO:0045222 ! CD4 biosynthetic process -is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process - -[Term] id: GO:0045223 ! regulation of CD4 biosynthetic process is_a: GO:0010559 {is_inferred="true"} ! regulation of glycoprotein biosynthetic process -is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process [Term] id: GO:0045224 ! positive regulation of CD4 biosynthetic process is_a: GO:0010560 {is_inferred="true"} ! positive regulation of glycoprotein biosynthetic process is_a: GO:0045223 {is_inferred="true"} ! regulation of CD4 biosynthetic process -is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process [Term] id: GO:0045225 ! negative regulation of CD4 biosynthetic process is_a: GO:0010561 {is_inferred="true"} ! negative regulation of glycoprotein biosynthetic process is_a: GO:0045223 {is_inferred="true"} ! regulation of CD4 biosynthetic process -is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process [Term] id: GO:0045229 ! external encapsulating structure organization @@ -35572,7 +35601,7 @@ [Term] id: GO:0045350 ! interferon-beta biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0045354 ! regulation of interferon-alpha biosynthetic process @@ -36108,7 +36137,7 @@ [Term] id: GO:0045524 ! interleukin-24 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0045525 ! interleukin-25 biosynthetic process @@ -36116,7 +36145,7 @@ [Term] id: GO:0045526 ! interleukin-26 biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0045528 ! regulation of interleukin-24 biosynthetic process @@ -40795,6 +40824,7 @@ [Term] id: GO:0046984 ! regulation of hemoglobin biosynthetic process +is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process is_a: GO:2000112 {is_inferred="true"} ! regulation of cellular macromolecule biosynthetic process [Term] @@ -40802,10 +40832,12 @@ is_a: GO:0010557 {is_inferred="true"} ! positive regulation of macromolecule biosynthetic process is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process is_a: GO:0046984 {is_inferred="true"} ! regulation of hemoglobin biosynthetic process +is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process [Term] id: GO:0046986 ! negative regulation of hemoglobin biosynthetic process is_a: GO:0046984 {is_inferred="true"} ! regulation of hemoglobin biosynthetic process +is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process is_a: GO:2000113 {is_inferred="true"} ! negative regulation of cellular macromolecule biosynthetic process [Term] @@ -41073,7 +41105,7 @@ [Term] id: GO:0048175 ! hepatocyte growth factor biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0048176 ! regulation of hepatocyte growth factor biosynthetic process @@ -42462,21 +42494,21 @@ [Term] id: GO:0050746 ! regulation of lipoprotein metabolic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process +is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process [Term] id: GO:0050747 ! positive regulation of lipoprotein metabolic process -is_a: GO:0010604 {is_inferred="true"} ! positive regulation of macromolecule metabolic process is_a: GO:0050746 {is_inferred="true"} ! regulation of lipoprotein metabolic process +is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process [Term] id: GO:0050748 ! negative regulation of lipoprotein metabolic process -is_a: GO:0010605 {is_inferred="true"} ! negative regulation of macromolecule metabolic process is_a: GO:0050746 {is_inferred="true"} ! regulation of lipoprotein metabolic process +is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process [Term] id: GO:0050751 ! fractalkine biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process [Term] id: GO:0050752 ! regulation of fractalkine biosynthetic process @@ -43464,7 +43496,6 @@ [Term] id: GO:0051204 ! protein insertion into mitochondrial membrane is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell -is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] id: GO:0051206 ! silicate metabolic process @@ -46320,11 +46351,13 @@ [Term] id: GO:0060310 ! regulation of elastin catabolic process is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process +is_a: GO:0042176 {is_inferred="true"} ! regulation of protein catabolic process is_a: GO:1903018 {is_inferred="true"} ! regulation of glycoprotein metabolic process [Term] id: GO:0060311 ! negative regulation of elastin catabolic process is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process +is_a: GO:0042177 {is_inferred="true"} ! negative regulation of protein catabolic process is_a: GO:0060310 {is_inferred="true"} ! regulation of elastin catabolic process is_a: GO:1903019 {is_inferred="true"} ! negative regulation of glycoprotein metabolic process @@ -49516,6 +49549,14 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0070199 ! establishment of protein localization to chromosome +is_a: GO:0034502 {is_inferred="true"} ! protein localization to chromosome + +[Term] +id: GO:0070200 ! establishment of protein localization to telomere +is_a: GO:0070198 {is_inferred="true"} ! protein localization to chromosome, telomeric region + +[Term] id: GO:0070202 ! regulation of establishment of protein localization to chromosome is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization @@ -51473,6 +51514,10 @@ is_a: GO:0051170 {is_inferred="true"} ! nuclear import [Term] +id: GO:0071169 ! establishment of protein localization to chromatin +is_a: GO:0071168 {is_inferred="true"} ! protein localization to chromatin + +[Term] id: GO:0071183 ! protocadherin-alpha-protocadherin-gamma complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -51481,6 +51526,14 @@ is_a: GO:0099612 {is_inferred="true"} ! protein localization to axon [Term] +id: GO:0071206 ! establishment of protein localization to juxtaparanode region of axon +is_a: GO:0071205 {is_inferred="true"} ! protein localization to juxtaparanode region of axon + +[Term] +id: GO:0071210 ! protein insertion into membrane raft +is_a: GO:1903044 {is_inferred="true"} ! protein localization to membrane raft + +[Term] id: GO:0071211 ! protein targeting to vacuole involved in autophagy is_a: GO:0006623 {is_inferred="true"} ! protein targeting to vacuole @@ -52803,10 +52856,6 @@ is_a: GO:0008104 {is_inferred="true"} ! protein localization [Term] -id: GO:0071693 ! protein transport within extracellular region -is_a: GO:0071692 {is_inferred="true"} ! protein localization to extracellular region - -[Term] id: GO:0071701 ! regulation of MAPK export from nucleus is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus @@ -54294,6 +54343,14 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] +id: GO:0072594 ! establishment of protein localization to organelle +is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle + +[Term] +id: GO:0072596 ! establishment of protein localization to chloroplast +is_a: GO:0072598 {is_inferred="true"} ! protein localization to chloroplast + +[Term] id: GO:0072597 ! maintenance of protein location in chloroplast is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein @@ -54302,6 +54359,18 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] +id: GO:0072599 ! establishment of protein localization to endoplasmic reticulum +is_a: GO:0070972 {is_inferred="true"} ! protein localization to endoplasmic reticulum + +[Term] +id: GO:0072600 ! establishment of protein localization to Golgi +is_a: GO:0034067 {is_inferred="true"} ! protein localization to Golgi apparatus + +[Term] +id: GO:0072655 ! establishment of protein localization to mitochondrion +is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion + +[Term] id: GO:0072656 ! maintenance of protein location in mitochondrion is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein @@ -54317,7 +54386,6 @@ [Term] id: GO:0072661 ! protein targeting to plasma membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0072662 ! protein localization to peroxisome @@ -54324,6 +54392,10 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] +id: GO:0072663 ! establishment of protein localization to peroxisome +is_a: GO:0072662 {is_inferred="true"} ! protein localization to peroxisome + +[Term] id: GO:0072664 ! maintenance of protein location in peroxisome is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein @@ -54332,6 +54404,10 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] +id: GO:0072666 ! establishment of protein localization to vacuole +is_a: GO:0072665 {is_inferred="true"} ! protein localization to vacuole + +[Term] id: GO:0072667 ! maintenance of protein location in vacuole is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein @@ -54358,7 +54434,6 @@ [Term] id: GO:0072693 ! protein targeting to prospore membrane -is_a: GO:1902657 {is_inferred="true"} ! protein localization to prospore membrane is_a: GO:1902658 {is_inferred="true"} ! establishment of protein localization to prospore membrane [Term] @@ -55823,6 +55898,10 @@ is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] +id: GO:0090002 ! establishment of protein localization to plasma membrane +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery + +[Term] id: GO:0090003 ! regulation of establishment of protein localization to plasma membrane is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane @@ -56260,10 +56339,13 @@ is_a: GO:0090148 {is_inferred="true"} ! membrane fission [Term] +id: GO:0090150 ! establishment of protein localization to membrane +is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane + +[Term] id: GO:0090151 ! establishment of protein localization to mitochondrial membrane is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion -is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] id: GO:0090152 ! establishment of protein localization to mitochondrial membrane involved in mitochondrial fission @@ -58590,6 +58672,16 @@ is_a: GO:0071435 {is_inferred="true"} ! potassium ion export [Term] +id: GO:0098674 ! extrinsic component of neuronal dense core vesicle membrane +is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0098922 {is_inferred="true"} ! extrinsic component of dense core granule membrane + +[Term] +id: GO:0098675 ! intrinsic component of neuronal dense core vesicle membrane +is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0098956 {is_inferred="true"} ! intrinsic component of dense core granule membrane + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -59039,10 +59131,8 @@ [Term] id: GO:0098877 ! neurotransmitter receptor transport to plasma membrane is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0098878 ! neurotransmitter receptor complex @@ -59433,7 +59523,6 @@ [Term] id: GO:0098969 ! neurotransmitter receptor transport to postsynaptic membrane is_a: GO:0098877 {is_inferred="true"} ! neurotransmitter receptor transport to plasma membrane -is_a: GO:1903539 {is_inferred="true"} ! protein localization to postsynaptic membrane is_a: GO:1903540 {is_inferred="true"} ! establishment of protein localization to postsynaptic membrane [Term] @@ -59632,8 +59721,7 @@ [Term] id: GO:0099036 ! anchored component of neuronal dense core vesicle membrane is_a: GO:0031225 {is_inferred="true"} ! anchored component of membrane -is_a: GO:0097458 {is_inferred="true"} ! neuron part -is_a: GO:0098956 {is_inferred="true"} ! intrinsic component of dense core granule membrane +is_a: GO:0098675 {is_inferred="true"} ! intrinsic component of neuronal dense core vesicle membrane [Term] id: GO:0099037 ! anchored component of presynaptic endosome membrane @@ -59736,8 +59824,7 @@ [Term] id: GO:0099066 ! integral component of neuronal dense core vesicle membrane is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane -is_a: GO:0097458 {is_inferred="true"} ! neuron part -is_a: GO:0098956 {is_inferred="true"} ! intrinsic component of dense core granule membrane +is_a: GO:0098675 {is_inferred="true"} ! intrinsic component of neuronal dense core vesicle membrane [Term] id: GO:0099067 ! integral component of presynaptic endosome membrane @@ -59894,9 +59981,7 @@ [Term] id: GO:0099110 ! microtubule polymerization based protein transport to cell tip cortex -is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0099112 {is_inferred="true"} ! microtubule polymerization based protein transport -is_a: GO:0099118 {is_inferred="true"} ! microtubule-based protein transport is_a: GO:1990896 {is_inferred="true"} ! protein localization to cell cortex of cell tip [Term] @@ -59906,10 +59991,9 @@ [Term] id: GO:0099112 ! microtubule polymerization based protein transport -is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0099098 {is_inferred="true"} ! microtubule polymerization based movement -is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport +is_a: GO:0099118 {is_inferred="true"} ! microtubule-based protein transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -73114,12 +73198,12 @@ [Term] id: GO:1902440 ! protein localization to mitotic spindle pole body -is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center +is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body [Term] id: GO:1902441 ! protein localization to meiotic spindle pole body is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center +is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body [Term] id: GO:1902442 ! regulation of ripoptosome assembly involved in necroptotic process @@ -73542,12 +73626,12 @@ [Term] id: GO:1902542 ! regulation of protein localization to mitotic spindle pole body -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1902363 {is_inferred="true"} ! regulation of protein localization to spindle pole body [Term] id: GO:1902543 ! negative regulation of protein localization to mitotic spindle pole body +is_a: GO:1902364 {is_inferred="true"} ! negative regulation of protein localization to spindle pole body is_a: GO:1902542 {is_inferred="true"} ! regulation of protein localization to mitotic spindle pole body -is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization [Term] id: GO:1902544 ! regulation of DNA N-glycosylase activity @@ -74094,6 +74178,7 @@ [Term] id: GO:1902658 ! establishment of protein localization to prospore membrane is_a: GO:0090150 {is_inferred="true"} ! establishment of protein localization to membrane +is_a: GO:1902657 {is_inferred="true"} ! protein localization to prospore membrane [Term] id: GO:1902659 ! regulation of glucose mediated signaling pathway @@ -75796,18 +75881,18 @@ [Term] id: GO:1903018 ! regulation of glycoprotein metabolic process is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process +is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process [Term] id: GO:1903019 ! negative regulation of glycoprotein metabolic process -is_a: GO:0010605 {is_inferred="true"} ! negative regulation of macromolecule metabolic process is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process +is_a: GO:0051248 {is_inferred="true"} ! negative regulation of protein metabolic process is_a: GO:1903018 {is_inferred="true"} ! regulation of glycoprotein metabolic process [Term] id: GO:1903020 ! positive regulation of glycoprotein metabolic process -is_a: GO:0010604 {is_inferred="true"} ! positive regulation of macromolecule metabolic process is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process +is_a: GO:0051247 {is_inferred="true"} ! positive regulation of protein metabolic process is_a: GO:1903018 {is_inferred="true"} ! regulation of glycoprotein metabolic process [Term] @@ -77731,9 +77816,7 @@ [Term] id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane is_a: GO:0032594 {is_inferred="true"} ! protein transport within lipid bilayer -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:1903446 ! geraniol metabolic process @@ -78164,6 +78247,7 @@ [Term] id: GO:1903540 ! establishment of protein localization to postsynaptic membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:1903539 {is_inferred="true"} ! protein localization to postsynaptic membrane [Term] id: GO:1903541 ! regulation of exosomal secretion @@ -78495,7 +78579,7 @@ [Term] id: GO:1903604 ! cytochrome metabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process +is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process [Term] id: GO:1903605 ! cytochrome biosynthetic process @@ -82233,7 +82317,7 @@ [Term] id: GO:1904391 ! response to ciliary neurotrophic factor -is_a: GO:0042221 {is_inferred="true"} ! response to chemical +is_a: GO:0010033 {is_inferred="true"} ! response to organic substance [Term] id: GO:1904392 ! cellular response to ciliary neurotrophic factor @@ -88275,6 +88359,7 @@ [Term] id: GO:1905633 ! establishment of protein localization to euchromatin is_a: GO:0071169 {is_inferred="true"} ! establishment of protein localization to chromatin +is_a: GO:1905632 {is_inferred="true"} ! protein localization to euchromatin [Term] id: GO:1905634 ! regulation of protein localization to chromatin @@ -96694,6 +96779,735 @@ is_a: CHEBI:24431 {is_inferred="true"} ! chemical entity [Term] +id: PR:000000001 ! protein +is_a: BFO:0000004 {is_inferred="true"} +is_a: CHEBI:33695 {is_inferred="true"} ! information biomacromolecule + +[Term] +id: PR:000000008 ! TGF-beta-like cystine-knot cytokine +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000000019 ! mitogen-activated protein kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000000028 ! small GTPase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000000033 ! tumor necrosis factor, TNF-like +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001004 ! CD4 molecule +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001091 ! interleukin-1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001092 ! interleukin-17 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001094 ! rhodopsin-like G-protein coupled receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001096 ! Toll-like receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001315 ! G-protein coupled receptor frizzled +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001317 ! interleukin-7 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001327 ! cadherin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001335 ! class 2 cytokine, IL-10 type +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001348 ! erythrocyte membrane protein Rh +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001349 ! fibroblast growth factor receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001353 ! granulocyte colony-stimulating factor receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001357 ! intercellular adhesion molecule 1/3 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001366 ! interleukin-11 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001368 ! interleukin-12 subunit alpha +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001369 ! interleukin-12 subunit beta +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001370 ! interleukin-13 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001373 ! interleukin-15 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001374 ! interleukin-16 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001376 ! interleukin-18 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001379 ! interleukin-2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001382 ! interleukin-21 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001383 ! interleukin-22 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001387 ! interleukin-3 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001389 ! interleukin-33 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001391 ! interleukin-4 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001392 ! interleukin-5 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001393 ! interleukin-6 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001395 ! interleukin-8 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001396 ! interleukin-9 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001397 ! interleukin-9 receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001753 ! transcription factor NF-kappa-B subunit +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001808 ! C/C-C motif small inducible chemokine +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001810 ! CSF-1/PDGF receptor-type tyrosine-protein kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001812 ! EGF receptor type tyrosine-protein kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001816 ! HGF/MSP receptor type tyrosine-protein kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001855 ! fractalkine +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001876 ! leukemia inhibitory factor receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001887 ! melanotransferrin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001902 ! nuclear receptor ROR-gamma +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001926 ! semaphorin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001946 ! tumor necrosis factor ligand superfamily member 10/11 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000001971 ! vascular endothelial growth factor receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000002198 ! catenin beta-1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000002201 ! dynein light chain +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003035 ! cellular tumor antigen p53 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003112 ! NFAT protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003171 ! IGFBP-related protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003237 ! 14-3-3 protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003425 ! hsp70 family chaperone +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003652 ! acrosin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003761 ! pituitary adenylate cyclase-activating polypeptide +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003777 ! adiponectin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000003858 ! aryl hydrocarbon receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004126 ! serum amyloid P-component +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004135 ! apelin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004140 ! apolipoprotein A-I +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004168 ! amyloid beta A4 protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004191 ! androgen receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004580 ! beta-2-microglobulin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004972 ! calcitonin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004974 ! caldesmon +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000004978 ! calmodulin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005110 ! cholecystokinin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005663 ! ciliary neurotrophic factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005716 ! collagen type IV alpha-3-binding protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005869 ! corticotropin-releasing factor receptor 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005870 ! corticotropin-releasing factor receptor 2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005931 ! granulocyte-macrophage colony-stimulating factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000005932 ! granulocyte colony-stimulating factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000006013 ! catenin delta-2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000006267 ! dystroglycan +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000006909 ! elongation factor 2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000006928 ! pro-epidermal growth factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000006990 ! eukaryotic translation initiation factor 4E +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007141 ! erythropoietin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007142 ! erythropoietin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007204 ! estrogen receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007494 ! fibroblast growth factor 3 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007495 ! fibroblast growth factor 4 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007496 ! fibroblast growth factor 5 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007497 ! fibroblast growth factor 6 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007499 ! fibroblast growth factor 8 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007555 ! filamin-A +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007556 ! filamin-B +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007557 ! filamin-C +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007581 ! fibronectin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007636 ! forkhead box protein N1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007806 ! galanin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007856 ! gastrin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007892 ! glucagon receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007893 ! GTP cyclohydrolase 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007928 ! glial cell line-derived neurotrophic factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007970 ! growth hormone receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007971 ! somatoliberin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007972 ! growth hormone-releasing hormone receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007973 ! appetite-regulating hormone +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000007988 ! gastric inhibitory polypeptide receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008476 ! orexin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008534 ! hepatocyte growth factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008630 ! high mobility group protein B1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008636 ! 3-hydroxy-3-methylglutaryl-coenzyme A reductase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008725 ! haptoglobin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008875 ! islet amyloid polypeptide +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008878 ! bone sialoprotein 2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008888 ! isocitrate dehydrogenase [NADP], mitochondrial +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008910 ! interferon-induced helicase C domain-containing protein 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008942 ! insulin-like growth factor II +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000008998 ! interleukin-21 receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009001 ! interleukin-23 receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009054 ! insulin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009064 ! insulin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009182 ! insulin-like growth factor I +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009345 ! kit ligand +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009744 ! low-density lipoprotein receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009799 ! leukemia inhibitory factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000009978 ! lactotransferrin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010413 ! macrophage migration inhibitory factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010444 ! mitogen-activated protein kinase kinase kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010818 ! myogenic factor 5 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010855 ! myosin-Ia +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010877 ! myogenin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000010882 ! myozenin-1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011116 ! NEDD8 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011164 ! nuclear factor of activated T-cells, cytoplasmic 2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011166 ! nuclear factor of activated T-cells, cytoplasmic 3 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011167 ! nuclear factor of activated T-cells, cytoplasmic 4 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011374 ! atrial natriuretic factor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011387 ! neuropeptide Y +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011406 ! glucocorticoid receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000011407 ! mineralocorticoid receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000012059 ! oncostatin-M +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000012421 ! proliferating cell nuclear antigen +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000012621 ! progesterone receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000012705 ! polymeric immunoglobulin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000012826 ! urokinase-type plasminogen activator +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013164 ! pancreatic prohormone +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013246 ! prolactin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013248 ! prolactin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013429 ! parathyroid hormone +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013526 ! peptide YY +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000013743 ! ras GTPase-activating protein 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000014543 ! secretin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000014544 ! secretin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000014717 ! protein SET +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000014841 ! sonic hedgehog protein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015288 ! smoothened +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015557 ! spondin-1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015794 ! syntaxin-2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015795 ! syntaxin-3 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015797 ! syntaxin-5 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015798 ! syntaxin-6 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000015975 ! sperm motility kinase Tcr mutant form +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016051 ! antigen peptide transporter 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016052 ! antigen peptide transporter 2 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016053 ! tapasin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016156 ! telethonin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016261 ! serotransferrin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016301 ! tyrosine 3-monooxygenase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016450 ! transmembrane protease serine 11D +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016542 ! DNA topoisomerase 1 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016798 ! titin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016876 ! thymidylate synthase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000016964 ! ubiquitin D +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000017272 ! vinculin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000017283 ! vitamin D3 receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000021998 ! neurotrophin +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000021999 ! death receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000022358 ! adenylate cyclase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000024025 ! methyl-accepting chemotaxis protein IV +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000024067 ! homoserine kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000024990 ! type II interferon +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000025845 ! ephrin receptor +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000025848 ! type I interferon +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000029189 ! AKT kinase +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000029394 ! ATP-dependent RNA helicase DDX58 +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] +id: PR:000037070 ! phosphoprotein +is_a: CHEBI:36080 {is_inferred="true"} ! protein + +[Term] id: UBERON:0001289 ! descending limb of loop of Henle is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium ------------------------------------------------------------------------ r38119 | hjd | 2017-01-17 11:29:06 -0800 (Tue, 17 Jan 2017) | 2 lines removed charges from plant enzyme activities changes in entailments ------------------------------------------------------------------------ r38115 | termgenie | 2017-01-17 08:57:41 -0800 (Tue, 17 Jan 2017) | 2 lines TermGenie commit for user: hbye reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38115) +++ go_inferences.obo (working copy) @@ -89174,6 +89174,59 @@ is_a: GO:1905822 {is_inferred="true"} ! regulation of mitotic sister chromatid arm separation [Term] +id: GO:1905825 ! regulation of selenocysteine metabolic process +is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process + +[Term] +id: GO:1905826 ! negative regulation of selenocysteine metabolic process +is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process +is_a: GO:1905825 {is_inferred="true"} ! regulation of selenocysteine metabolic process + +[Term] +id: GO:1905827 ! positive regulation of selenocysteine metabolic process +is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process +is_a: GO:1905825 {is_inferred="true"} ! regulation of selenocysteine metabolic process + +[Term] +id: GO:1905828 ! regulation of prostaglandin catabolic process +is_a: GO:0019217 {is_inferred="true"} ! regulation of fatty acid metabolic process +is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process +is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process + +[Term] +id: GO:1905829 ! negative regulation of prostaglandin catabolic process +is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process +is_a: GO:0045922 {is_inferred="true"} ! negative regulation of fatty acid metabolic process +is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process +is_a: GO:1905828 {is_inferred="true"} ! regulation of prostaglandin catabolic process + +[Term] +id: GO:1905830 ! positive regulation of prostaglandin catabolic process +is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process +is_a: GO:0045923 {is_inferred="true"} ! positive regulation of fatty acid metabolic process +is_a: GO:0050996 {is_inferred="true"} ! positive regulation of lipid catabolic process +is_a: GO:1905828 {is_inferred="true"} ! regulation of prostaglandin catabolic process + +[Term] +id: GO:1905831 ! negative regulation of spindle assembly +is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization +is_a: GO:0090169 {is_inferred="true"} ! regulation of spindle assembly +is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly + +[Term] +id: GO:1905832 ! positive regulation of spindle assembly +is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process +is_a: GO:0090169 {is_inferred="true"} ! regulation of spindle assembly +is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly + +[Term] +id: GO:1905833 ! negative regulation of microtubule nucleation +is_a: GO:0010968 {is_inferred="true"} ! regulation of microtubule nucleation +is_a: GO:0031115 {is_inferred="true"} ! negative regulation of microtubule polymerization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38098 | hjd | 2017-01-16 13:49:51 -0800 (Mon, 16 Jan 2017) | 2 lines added for plant enzyme activities for metacyc mapping project changes in entailments ------------------------------------------------------------------------ r38098 | hjd | 2017-01-16 13:49:51 -0800 (Mon, 16 Jan 2017) | 2 lines added for plant enzyme activities for metacyc mapping project changes in entailments ------------------------------------------------------------------------ r38095 | hjd | 2017-01-16 12:24:54 -0800 (Mon, 16 Jan 2017) | 2 lines more plant enzymes; total 43 for the day. changes in entailments ------------------------------------------------------------------------ r38093 | hjd | 2017-01-16 12:06:29 -0800 (Mon, 16 Jan 2017) | 2 lines added more plant enzymes changes in entailments ------------------------------------------------------------------------ r38091 | hjd | 2017-01-16 11:32:18 -0800 (Mon, 16 Jan 2017) | 2 lines added 4 plant enzyme terms changes in entailments ------------------------------------------------------------------------ r38089 | dph | 2017-01-16 09:51:31 -0800 (Mon, 16 Jan 2017) | 2 lines GH12921-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38089) +++ go_inferences.obo (working copy) @@ -79563,7 +79563,8 @@ [Term] id: GO:1903830 ! magnesium ion transmembrane transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0015693 {is_inferred="true"} ! magnesium ion transport +is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport [Term] id: GO:1903831 ! signal transduction involved in cellular response to ammonium ion @@ -89893,6 +89894,10 @@ is_a: GO:0007006 {is_inferred="true"} ! mitochondrial membrane organization [Term] +id: GO:1990614 ! mitochondrial magnesium ion transmembrane transport +is_a: GO:0045016 {is_inferred="true"} ! mitochondrial magnesium ion transport + +[Term] id: GO:1990621 ! Vps4-Vta1 complex is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex ------------------------------------------------------------------------ r38087 | dph | 2017-01-16 09:25:19 -0800 (Mon, 16 Jan 2017) | 2 lines GH12888-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38087) +++ go_inferences.obo (working copy) @@ -55352,7 +55352,7 @@ [Term] id: GO:0080093 ! regulation of photorespiration -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process [Term] id: GO:0080094 ! response to trehalose-6-phosphate ------------------------------------------------------------------------ r38085 | termgenie | 2017-01-16 09:01:46 -0800 (Mon, 16 Jan 2017) | 4 lines TermGenie commit for user: zebrafishembryo reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38085) +++ go_inferences.obo (working copy) @@ -89159,6 +89159,20 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] +id: GO:1905822 ! regulation of mitotic sister chromatid arm separation +is_a: GO:0010965 {is_inferred="true"} ! regulation of mitotic sister chromatid separation + +[Term] +id: GO:1905823 ! negative regulation of mitotic sister chromatid arm separation +is_a: GO:1905822 {is_inferred="true"} ! regulation of mitotic sister chromatid arm separation +is_a: GO:2000816 {is_inferred="true"} ! negative regulation of mitotic sister chromatid separation + +[Term] +id: GO:1905824 ! positive regulation of mitotic sister chromatid arm separation +is_a: GO:1901970 {is_inferred="true"} ! positive regulation of mitotic sister chromatid separation +is_a: GO:1905822 {is_inferred="true"} ! regulation of mitotic sister chromatid arm separation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38083 | paola | 2017-01-16 07:56:38 -0800 (Mon, 16 Jan 2017) | 2 lines GH TPV single stranded and double stranded DNA binding #12130 - closed, see ticket for details changes in entailments ------------------------------------------------------------------------ r38077 | paola | 2017-01-16 04:08:34 -0800 (Mon, 16 Jan 2017) | 3 lines GH TPV single stranded and double stranded DNA binding #12130 - work in progress, see ticket for details changes in entailments ------------------------------------------------------------------------ r38075 | davidos | 2017-01-16 03:35:54 -0800 (Mon, 16 Jan 2017) | 1 line Fixed missing classification on microtubule-based process GO:0007017 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38075) +++ go_inferences.obo (working copy) @@ -429,7 +429,6 @@ [Term] id: GO:0000212 ! meiotic spindle organization is_a: GO:0007051 {is_inferred="true"} ! spindle organization -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -459,7 +458,6 @@ [Term] id: GO:0000226 ! microtubule cytoskeleton organization is_a: GO:0007010 {is_inferred="true"} ! cytoskeleton organization -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0000227 ! oxaloacetate secondary active transmembrane transporter activity @@ -764,10 +762,6 @@ is_a: GO:0000735 {is_inferred="true"} ! removal of nonhomologous ends [Term] -id: GO:0000740 ! nuclear membrane fusion -is_a: GO:0000741 {is_inferred="true"} ! karyogamy - -[Term] id: GO:0000741 ! karyogamy is_a: GO:0048284 {is_inferred="true"} ! organelle fusion @@ -4536,6 +4530,10 @@ is_a: GO:0030010 {is_inferred="true"} ! establishment of cell polarity [Term] +id: GO:0003425 ! establishment of mitotic spindle orientation involved in growth plate cartilage chondrocyte division +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization + +[Term] id: GO:0003426 ! cytoskeleton polarization involved in growth plate cartilage chondrocyte division is_a: GO:0030952 {is_inferred="true"} ! establishment or maintenance of cytoskeleton polarity @@ -4604,6 +4602,10 @@ is_a: GO:0038023 {is_inferred="true"} ! signaling receptor activity [Term] +id: GO:0004971 ! AMPA glutamate receptor activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity + +[Term] id: GO:0004972 ! NMDA glutamate receptor activity is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity @@ -7790,12 +7792,9 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] -id: GO:0007017 ! microtubule-based process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0007019 ! microtubule depolymerization is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0007026 ! negative regulation of microtubule depolymerization @@ -8381,7 +8380,7 @@ [Term] id: GO:0008103 ! oocyte microtubule cytoskeleton polarization -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] id: GO:0008142 ! oxysterol binding @@ -8539,7 +8538,7 @@ [Term] id: GO:0008328 ! ionotropic glutamate receptor complex -is_a: GO:0034703 {is_inferred="true"} ! cation channel complex +is_a: GO:0034702 {is_inferred="true"} ! ion channel complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex is_a: GO:0098878 {is_inferred="true"} ! neurotransmitter receptor complex @@ -14357,7 +14356,7 @@ [Term] id: GO:0015277 ! kainate selective glutamate receptor activity -is_a: GO:0005249 {is_inferred="true"} ! voltage-gated potassium channel activity +is_a: GO:0005267 {is_inferred="true"} ! potassium channel activity is_a: GO:0005272 {is_inferred="true"} ! sodium channel activity is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity @@ -16634,6 +16633,10 @@ is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] +id: GO:0017146 ! NMDA selective glutamate receptor complex +is_a: GO:0034703 {is_inferred="true"} ! cation channel complex + +[Term] id: GO:0017148 ! negative regulation of translation is_a: GO:0006417 {is_inferred="true"} ! regulation of translation is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression @@ -19295,6 +19298,10 @@ is_a: GO:0000226 {is_inferred="true"} ! microtubule cytoskeleton organization [Term] +id: GO:0021816 ! extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization + +[Term] id: GO:0021822 ! negative regulation of cell motility involved in cerebral cortex radial glia guided migration is_a: GO:1903976 {is_inferred="true"} ! negative regulation of glial cell migration @@ -20950,6 +20957,10 @@ is_a: GO:0031122 {is_inferred="true"} ! cytoplasmic microtubule organization [Term] +id: GO:0030954 ! astral microtubule nucleation +is_a: GO:0051418 {is_inferred="true"} ! microtubule nucleation by microtubule organizing center + +[Term] id: GO:0030955 ! potassium ion binding is_a: GO:0031420 {is_inferred="true"} ! alkali metal ion binding @@ -21065,6 +21076,7 @@ id: GO:0031025 ! equatorial microtubule organizing center disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0031026 ! glutamate synthase complex @@ -21224,6 +21236,7 @@ [Term] id: GO:0031122 ! cytoplasmic microtubule organization is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0031135 ! negative regulation of conjugation @@ -22755,7 +22768,6 @@ [Term] id: GO:0032118 ! horsetail-astral microtubule organization -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -22767,7 +22779,6 @@ [Term] id: GO:0032121 ! meiotic attachment of telomeric heterochromatin to spindle pole body -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -23139,6 +23150,10 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] +id: GO:0032281 ! AMPA glutamate receptor complex +is_a: GO:0034703 {is_inferred="true"} ! cation channel complex + +[Term] id: GO:0032282 ! plastid acetyl-CoA carboxylase complex is_a: GO:0009317 {is_inferred="true"} ! acetyl-CoA carboxylase complex is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -25100,7 +25115,7 @@ [Term] id: GO:0032983 ! kainate selective glutamate receptor complex -is_a: GO:0008076 {is_inferred="true"} ! voltage-gated potassium channel complex +is_a: GO:0034705 {is_inferred="true"} ! potassium channel complex is_a: GO:0034706 {is_inferred="true"} ! sodium channel complex [Term] @@ -28294,7 +28309,7 @@ [Term] id: GO:0035044 ! sperm aster formation -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] id: GO:0035045 ! sperm plasma membrane disassembly @@ -28348,6 +28363,10 @@ is_a: GO:1901654 {is_inferred="true"} ! response to ketone [Term] +id: GO:0035082 ! axoneme assembly +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization + +[Term] id: GO:0035091 ! phosphatidylinositol binding is_a: GO:0005543 {is_inferred="true"} ! phospholipid binding @@ -30074,6 +30093,10 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] +id: GO:0036376 ! sodium ion export from cell +is_a: GO:0071436 {is_inferred="true"} ! sodium ion export + +[Term] id: GO:0036378 ! calcitriol biosynthetic process from calciol is_a: GO:0042368 {is_inferred="true"} ! vitamin D biosynthetic process is_a: GO:0046173 {is_inferred="true"} ! polyol biosynthetic process @@ -40467,6 +40490,7 @@ [Term] id: GO:0046785 ! microtubule polymerization is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0046807 ! viral scaffold assembly and maintenance @@ -43462,6 +43486,7 @@ [Term] id: GO:0051229 ! meiotic spindle disassembly is_a: GO:0000212 {is_inferred="true"} ! meiotic spindle organization +is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0051230 {is_inferred="true"} ! spindle disassembly [Term] @@ -43470,7 +43495,6 @@ [Term] id: GO:0051232 ! meiotic spindle elongation -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0051231 {is_inferred="true"} ! spindle elongation is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -43522,7 +43546,6 @@ [Term] id: GO:0051257 ! meiotic spindle midzone assembly -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0051255 {is_inferred="true"} ! spindle midzone assembly is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -43587,11 +43610,9 @@ [Term] id: GO:0051293 ! establishment of spindle localization is_a: GO:0051653 {is_inferred="true"} ! spindle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:0051295 ! establishment of meiotic spindle localization -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0051293 {is_inferred="true"} ! establishment of spindle localization is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -43874,6 +43895,18 @@ is_a: GO:1901654 {is_inferred="true"} ! response to ketone [Term] +id: GO:0051415 ! interphase microtubule nucleation by interphase microtubule organizing center +is_a: GO:0051418 {is_inferred="true"} ! microtubule nucleation by microtubule organizing center + +[Term] +id: GO:0051417 ! microtubule nucleation by spindle pole body +is_a: GO:0051418 {is_inferred="true"} ! microtubule nucleation by microtubule organizing center + +[Term] +id: GO:0051418 ! microtubule nucleation by microtubule organizing center +is_a: GO:0007020 {is_inferred="true"} ! microtubule nucleation + +[Term] id: GO:0051421 ! regulation of endo-1,4-beta-xylanase activity is_a: GO:0051336 {is_inferred="true"} ! regulation of hydrolase activity @@ -45896,7 +45929,6 @@ [Term] id: GO:0060152 ! microtubule-based peroxisome localization is_a: GO:0007017 {is_inferred="true"} ! microtubule-based process -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:0060159 ! regulation of dopamine receptor signaling pathway @@ -47022,10 +47054,6 @@ is_a: GO:1903320 {is_inferred="true"} ! regulation of protein modification by small protein conjugation or removal [Term] -id: GO:0060626 ! regulation of cullin deneddylation -is_a: GO:0060625 {is_inferred="true"} ! regulation of protein deneddylation - -[Term] id: GO:0060628 ! regulation of ER to Golgi vesicle-mediated transport is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport @@ -49065,7 +49093,7 @@ [Term] id: GO:0061763 ! multivesicular body-lysosome fusion -is_a: GO:0051469 {is_inferred="true"} ! vesicle fusion with vacuole +is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion [Term] id: GO:0061768 ! magnesium:sodium antiporter activity @@ -56297,7 +56325,6 @@ [Term] id: GO:0090172 ! microtubule cytoskeleton organization involved in homologous chromosome segregation is_a: GO:0000226 {is_inferred="true"} ! microtubule cytoskeleton organization -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -56514,6 +56541,10 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] +id: GO:0090222 ! centrosome-templated microtubule nucleation +is_a: GO:0051418 {is_inferred="true"} ! microtubule nucleation by microtubule organizing center + +[Term] id: GO:0090224 ! regulation of spindle organization is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process is_a: GO:0070507 {is_inferred="true"} ! regulation of microtubule cytoskeleton organization @@ -58063,6 +58094,10 @@ is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] +id: GO:0097623 ! potassium ion export across plasma membrane +is_a: GO:0098668 {is_inferred="true"} ! potassium ion export from cell + +[Term] id: GO:0097630 ! intrinsic component of omegasome membrane is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane is_a: GO:0044424 {is_inferred="true"} ! intracellular part @@ -58259,7 +58294,6 @@ [Term] id: GO:0098534 ! centriole assembly is_a: GO:0070925 {is_inferred="true"} ! organelle assembly -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] id: GO:0098538 ! lumenal side of transport vesicle membrane @@ -58548,6 +58582,14 @@ is_a: GO:0098665 {is_inferred="true"} ! serotonin receptor complex [Term] +id: GO:0098667 ! sodium ion export across plasma membrane +is_a: GO:0036376 {is_inferred="true"} ! sodium ion export from cell + +[Term] +id: GO:0098668 ! potassium ion export from cell +is_a: GO:0071435 {is_inferred="true"} ! potassium ion export + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -58972,7 +59014,6 @@ [Term] id: GO:0098866 ! multivesicular body fusion to apical plasma membrane -is_a: GO:0045026 {is_inferred="true"} ! plasma membrane fusion is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion [Term] @@ -59216,7 +59257,7 @@ is_a: GO:0008088 {is_inferred="true"} ! axo-dendritic transport [Term] -id: GO:0098932 ! disruption by virus of host cell wall petidoglycan during virus entry +id: GO:0098932 ! disruption by virus of host cell wall peptidoglycan during virus entry is_a: GO:0098994 {is_inferred="true"} ! disruption of host cell envelope during viral entry [Term] @@ -66904,22 +66945,22 @@ [Term] id: GO:1901193 ! regulation of formation of translation preinitiation complex -is_a: GO:0006446 {is_inferred="true"} ! regulation of translational initiation is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization +is_a: GO:1904688 {is_inferred="true"} ! regulation of cytoplasmic translational initiation [Term] id: GO:1901194 ! negative regulation of formation of translation preinitiation complex -is_a: GO:0045947 {is_inferred="true"} ! negative regulation of translational initiation is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901193 {is_inferred="true"} ! regulation of formation of translation preinitiation complex +is_a: GO:1904689 {is_inferred="true"} ! negative regulation of cytoplasmic translational initiation [Term] id: GO:1901195 ! positive regulation of formation of translation preinitiation complex is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:0045948 {is_inferred="true"} ! positive regulation of translational initiation is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1901193 {is_inferred="true"} ! regulation of formation of translation preinitiation complex +is_a: GO:1904690 {is_inferred="true"} ! positive regulation of cytoplasmic translational initiation [Term] id: GO:1901196 ! positive regulation of calcium-mediated signaling involved in cellular response to salt stress @@ -78224,7 +78265,6 @@ [Term] id: GO:1903563 ! microtubule bundle formation involved in horsetail-astral microtubule organization is_a: GO:0001578 {is_inferred="true"} ! microtubule bundle formation -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -84119,7 +84159,7 @@ id: GO:1904782 ! negative regulation of NMDA glutamate receptor activity is_a: GO:1900450 {is_inferred="true"} ! negative regulation of glutamate receptor signaling pathway is_a: GO:2000272 {is_inferred="true"} ! negative regulation of receptor activity -is_a: GO:2000310 {is_inferred="true"} ! regulation of N-methyl-D-aspartate selective glutamate receptor activity +is_a: GO:2000310 {is_inferred="true"} ! regulation of NMDA receptor activity is_a: GO:2001258 {is_inferred="true"} ! negative regulation of cation channel activity [Term] @@ -84126,7 +84166,7 @@ id: GO:1904783 ! positive regulation of NMDA glutamate receptor activity is_a: GO:1900451 {is_inferred="true"} ! positive regulation of glutamate receptor signaling pathway is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity -is_a: GO:2000310 {is_inferred="true"} ! regulation of N-methyl-D-aspartate selective glutamate receptor activity +is_a: GO:2000310 {is_inferred="true"} ! regulation of NMDA receptor activity is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] @@ -91616,13 +91656,13 @@ is_a: GO:2000307 {is_inferred="true"} ! regulation of tumor necrosis factor (ligand) superfamily member 11 production [Term] -id: GO:2000310 ! regulation of N-methyl-D-aspartate selective glutamate receptor activity +id: GO:2000310 ! regulation of NMDA receptor activity is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity is_a: GO:1900449 {is_inferred="true"} ! regulation of glutamate receptor signaling pathway is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity [Term] -id: GO:2000311 ! regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +id: GO:2000311 ! regulation of AMPA receptor activity is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity is_a: GO:1900449 {is_inferred="true"} ! regulation of glutamate receptor signaling pathway is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity @@ -94792,10 +94832,10 @@ is_a: GO:2000966 {is_inferred="true"} ! regulation of cell wall polysaccharide catabolic process [Term] -id: GO:2000969 ! positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +id: GO:2000969 ! positive regulation of AMPA receptor activity is_a: GO:1900451 {is_inferred="true"} ! positive regulation of glutamate receptor signaling pathway is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity -is_a: GO:2000311 {is_inferred="true"} ! regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +is_a: GO:2000311 {is_inferred="true"} ! regulation of AMPA receptor activity is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] ------------------------------------------------------------------------ r38067 | dph | 2017-01-15 07:59:27 -0800 (Sun, 15 Jan 2017) | 2 lines GH12909-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38067) +++ go_inferences.obo (working copy) @@ -90090,6 +90090,7 @@ [Term] id: GO:1990913 ! sperm head plasma membrane is_a: GO:0097223 {is_inferred="true"} ! sperm part +is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] id: GO:1990914 ! integral component of periplasmic side of plasma membrane ------------------------------------------------------------------------ r38065 | dph | 2017-01-15 07:36:11 -0800 (Sun, 15 Jan 2017) | 2 lines GH12916-closed, GH12918-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38065) +++ go_inferences.obo (working copy) @@ -4576,10 +4576,6 @@ is_a: GO:0003676 {is_inferred="true"} ! nucleic acid binding [Term] -id: GO:0003682 ! chromatin binding -is_a: GO:0044877 {is_inferred="true"} ! macromolecular complex binding - -[Term] id: GO:0003708 ! retinoic acid receptor activity is_a: GO:0038023 {is_inferred="true"} ! signaling receptor activity @@ -6385,10 +6381,6 @@ is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process [Term] -id: GO:0006325 ! chromatin organization -is_a: GO:0043933 {is_inferred="true"} ! macromolecular complex subunit organization - -[Term] id: GO:0006334 ! nucleosome assembly is_a: GO:0065004 {is_inferred="true"} ! protein-DNA complex assembly @@ -12755,7 +12747,6 @@ [Term] id: GO:0010847 ! regulation of chromatin assembly is_a: GO:0001672 {is_inferred="true"} ! regulation of chromatin assembly or disassembly -is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis [Term] @@ -21846,7 +21837,6 @@ id: GO:0031452 ! negative regulation of heterochromatin assembly is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly is_a: GO:0045798 {is_inferred="true"} ! negative regulation of chromatin assembly or disassembly -is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:0031453 ! positive regulation of heterochromatin assembly @@ -21853,7 +21843,6 @@ is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0045799 {is_inferred="true"} ! positive regulation of chromatin assembly or disassembly -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:0031455 ! glycine betaine metabolic process @@ -21884,6 +21873,10 @@ is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] +id: GO:0031491 ! nucleosome binding +is_a: GO:0044877 {is_inferred="true"} ! macromolecular complex binding + +[Term] id: GO:0031494 ! regulation of mating type switching is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process @@ -21902,11 +21895,11 @@ [Term] id: GO:0031497 ! chromatin assembly -is_a: GO:0065003 {is_inferred="true"} ! macromolecular complex assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] id: GO:0031498 ! chromatin disassembly -is_a: GO:0032984 {is_inferred="true"} ! macromolecular complex disassembly +is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly [Term] id: GO:0031501 ! mannosyltransferase complex @@ -72298,7 +72291,7 @@ [Term] id: GO:1902275 ! regulation of chromatin organization -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization +is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization [Term] id: GO:1902276 ! regulation of pancreatic amylase secretion @@ -76090,7 +76083,6 @@ is_a: GO:0045798 {is_inferred="true"} ! negative regulation of chromatin assembly or disassembly is_a: GO:1900050 {is_inferred="true"} ! negative regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly -is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:1903099 ! positive regulation of CENP-A containing nucleosome assembly @@ -76098,7 +76090,6 @@ is_a: GO:0045799 {is_inferred="true"} ! positive regulation of chromatin assembly or disassembly is_a: GO:1900051 {is_inferred="true"} ! positive regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1903100 ! 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process @@ -86486,13 +86477,13 @@ [Term] id: GO:1905268 ! negative regulation of chromatin organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1902275 {is_inferred="true"} ! regulation of chromatin organization +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:1905269 ! positive regulation of chromatin organization -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1902275 {is_inferred="true"} ! regulation of chromatin organization +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1905270 ! Meynert cell differentiation ------------------------------------------------------------------------ r38059 | dph | 2017-01-14 12:13:54 -0800 (Sat, 14 Jan 2017) | 2 lines GH12919-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38061) +++ go_inferences.obo (working copy) @@ -13193,6 +13193,7 @@ [Term] id: GO:0010965 ! regulation of mitotic sister chromatid separation is_a: GO:0033047 {is_inferred="true"} ! regulation of mitotic sister chromatid segregation +is_a: GO:1905818 {is_inferred="true"} ! regulation of chromosome separation [Term] id: GO:0010966 ! regulation of phosphate transport @@ -49284,17 +49285,14 @@ [Term] id: GO:0070129 ! regulation of mitochondrial translation is_a: GO:0006417 {is_inferred="true"} ! regulation of translation -is_a: GO:0010821 {is_inferred="true"} ! regulation of mitochondrion organization [Term] id: GO:0070130 ! negative regulation of mitochondrial translation -is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization is_a: GO:0017148 {is_inferred="true"} ! negative regulation of translation is_a: GO:0070129 {is_inferred="true"} ! regulation of mitochondrial translation [Term] id: GO:0070131 ! positive regulation of mitochondrial translation -is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization is_a: GO:0045727 {is_inferred="true"} ! positive regulation of translation is_a: GO:0070129 {is_inferred="true"} ! regulation of mitochondrial translation @@ -70775,7 +70773,7 @@ id: GO:1901970 ! positive regulation of mitotic sister chromatid separation is_a: GO:0010965 {is_inferred="true"} ! regulation of mitotic sister chromatid separation is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division -is_a: GO:0051984 {is_inferred="true"} ! positive regulation of chromosome segregation +is_a: GO:1905820 {is_inferred="true"} ! positive regulation of chromosome separation is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] @@ -77397,7 +77395,7 @@ is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:0051984 {is_inferred="true"} ! positive regulation of chromosome segregation is_a: GO:1903379 {is_inferred="true"} ! regulation of mitotic chromosome condensation -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization +is_a: GO:1905821 {is_inferred="true"} ! positive regulation of chromosome condensation [Term] id: GO:1903381 ! regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway @@ -85849,19 +85847,19 @@ [Term] id: GO:1905132 ! regulation of meiotic chromosome separation is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division -is_a: GO:0051983 {is_inferred="true"} ! regulation of chromosome segregation +is_a: GO:1905818 {is_inferred="true"} ! regulation of chromosome separation [Term] id: GO:1905133 ! negative regulation of meiotic chromosome separation is_a: GO:0045835 {is_inferred="true"} ! negative regulation of meiotic nuclear division -is_a: GO:0051985 {is_inferred="true"} ! negative regulation of chromosome segregation is_a: GO:1905132 {is_inferred="true"} ! regulation of meiotic chromosome separation +is_a: GO:1905819 {is_inferred="true"} ! negative regulation of chromosome separation [Term] id: GO:1905134 ! positive regulation of meiotic chromosome separation is_a: GO:0045836 {is_inferred="true"} ! positive regulation of meiotic nuclear division -is_a: GO:0051984 {is_inferred="true"} ! positive regulation of chromosome segregation is_a: GO:1905132 {is_inferred="true"} ! regulation of meiotic chromosome separation +is_a: GO:1905820 {is_inferred="true"} ! positive regulation of chromosome separation [Term] id: GO:1905135 ! biotin import across plasma membrane @@ -89080,6 +89078,56 @@ is_a: GO:1905810 {is_inferred="true"} ! regulation of excitatory synapse disassembly [Term] +id: GO:1905812 ! regulation of motor neuron axon guidance +is_a: GO:1902667 {is_inferred="true"} ! regulation of axon guidance + +[Term] +id: GO:1905813 ! negative regulation of motor neuron axon guidance +is_a: GO:1902668 {is_inferred="true"} ! negative regulation of axon guidance +is_a: GO:1905812 {is_inferred="true"} ! regulation of motor neuron axon guidance + +[Term] +id: GO:1905814 ! positive regulation of motor neuron axon guidance +is_a: GO:1902669 {is_inferred="true"} ! positive regulation of axon guidance +is_a: GO:1905812 {is_inferred="true"} ! regulation of motor neuron axon guidance + +[Term] +id: GO:1905815 ! regulation of dorsal/ventral axon guidance +is_a: GO:1902667 {is_inferred="true"} ! regulation of axon guidance + +[Term] +id: GO:1905816 ! negative regulation of dorsal/ventral axon guidance +is_a: GO:1902668 {is_inferred="true"} ! negative regulation of axon guidance +is_a: GO:1905815 {is_inferred="true"} ! regulation of dorsal/ventral axon guidance + +[Term] +id: GO:1905817 ! positive regulation of dorsal/ventral axon guidance +is_a: GO:1902669 {is_inferred="true"} ! positive regulation of axon guidance +is_a: GO:1905815 {is_inferred="true"} ! regulation of dorsal/ventral axon guidance + +[Term] +id: GO:1905818 ! regulation of chromosome separation +is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process +is_a: GO:0051983 {is_inferred="true"} ! regulation of chromosome segregation + +[Term] +id: GO:1905819 ! negative regulation of chromosome separation +is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0051985 {is_inferred="true"} ! negative regulation of chromosome segregation +is_a: GO:1905818 {is_inferred="true"} ! regulation of chromosome separation + +[Term] +id: GO:1905820 ! positive regulation of chromosome separation +is_a: GO:0051984 {is_inferred="true"} ! positive regulation of chromosome segregation +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process +is_a: GO:1905818 {is_inferred="true"} ! regulation of chromosome separation + +[Term] +id: GO:1905821 ! positive regulation of chromosome condensation +is_a: GO:0060623 {is_inferred="true"} ! regulation of chromosome condensation +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -94054,6 +94102,7 @@ id: GO:2000816 ! negative regulation of mitotic sister chromatid separation is_a: GO:0010965 {is_inferred="true"} ! regulation of mitotic sister chromatid separation is_a: GO:0033048 {is_inferred="true"} ! negative regulation of mitotic sister chromatid segregation +is_a: GO:1905819 {is_inferred="true"} ! negative regulation of chromosome separation [Term] id: GO:2000817 ! regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore ------------------------------------------------------------------------ r38044 | tberardi | 2017-01-13 13:53:44 -0800 (Fri, 13 Jan 2017) | 1 line GH12895 def change and NTR: GO:0045251 electron transfer flavoprotein complex - def edits changes in entailments ------------------------------------------------------------------------ r38042 | dph | 2017-01-13 09:28:55 -0800 (Fri, 13 Jan 2017) | 2 lines GH12906-closed changes in entailments ------------------------------------------------------------------------ r38040 | hjd | 2017-01-13 09:05:05 -0800 (Fri, 13 Jan 2017) | 2 lines added plant enzyme termss changes in entailments ------------------------------------------------------------------------ r38017 | dph | 2017-01-12 06:08:51 -0800 (Thu, 12 Jan 2017) | 2 lines GH12911-closed changes in entailments ------------------------------------------------------------------------ r38017 | dph | 2017-01-12 06:08:51 -0800 (Thu, 12 Jan 2017) | 2 lines GH12911-closed changes in entailments ------------------------------------------------------------------------ r38014 | termgenie | 2017-01-11 18:43:27 -0800 (Wed, 11 Jan 2017) | 3 lines TermGenie commit for user: tberardini reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38015) +++ go_inferences.obo (working copy) @@ -89071,6 +89071,15 @@ is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization [Term] +id: GO:1905810 ! regulation of excitatory synapse disassembly +is_a: GO:1905806 {is_inferred="true"} ! regulation of synapse disassembly + +[Term] +id: GO:1905811 ! negative regulation of excitatory synapse disassembly +is_a: GO:1905807 {is_inferred="true"} ! negative regulation of synapse disassembly +is_a: GO:1905810 {is_inferred="true"} ! regulation of excitatory synapse disassembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r38013 | tberardi | 2017-01-11 18:37:14 -0800 (Wed, 11 Jan 2017) | 1 line removed extra spaces changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 38013) +++ go_inferences.obo (working copy) @@ -45097,8 +45097,8 @@ [Term] id: GO:0051964 ! negative regulation of synapse assembly -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:0051965 ! positive regulation of synapse assembly @@ -68945,7 +68945,7 @@ [Term] id: GO:1901613 ! negative regulation of terminal button organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization is_a: GO:2000331 {is_inferred="true"} ! regulation of terminal button organization [Term] @@ -69004,8 +69004,8 @@ [Term] id: GO:1901627 ! negative regulation of postsynaptic membrane organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901626 {is_inferred="true"} ! regulation of postsynaptic membrane organization +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:1901628 ! positive regulation of postsynaptic membrane organization @@ -69018,8 +69018,8 @@ [Term] id: GO:1901630 ! negative regulation of presynaptic membrane organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901629 {is_inferred="true"} ! regulation of presynaptic membrane organization +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:1901631 ! positive regulation of presynaptic membrane organization @@ -82236,8 +82236,8 @@ [Term] id: GO:1904397 ! negative regulation of neuromuscular junction development -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1904396 {is_inferred="true"} ! regulation of neuromuscular junction development +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:1904398 ! positive regulation of neuromuscular junction development @@ -88973,6 +88973,104 @@ is_a: GO:0071539 {is_inferred="true"} ! protein localization to centrosome [Term] +id: GO:1905794 ! response to puromycin +is_a: GO:0014074 {is_inferred="true"} ! response to purine-containing compound +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound + +[Term] +id: GO:1905795 ! cellular response to puromycin +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:1905794 {is_inferred="true"} ! response to puromycin + +[Term] +id: GO:1905796 ! regulation of intraciliary anterograde transport +is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization +is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport +is_a: GO:0060632 {is_inferred="true"} ! regulation of microtubule-based movement + +[Term] +id: GO:1905797 ! negative regulation of intraciliary anterograde transport +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0051271 {is_inferred="true"} ! negative regulation of cellular component movement +is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport +is_a: GO:1905796 {is_inferred="true"} ! regulation of intraciliary anterograde transport + +[Term] +id: GO:1905798 ! positive regulation of intraciliary anterograde transport +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization +is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0051272 {is_inferred="true"} ! positive regulation of cellular component movement +is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport +is_a: GO:1905796 {is_inferred="true"} ! regulation of intraciliary anterograde transport + +[Term] +id: GO:1905799 ! regulation of intraciliary retrograde transport +is_a: GO:0031344 {is_inferred="true"} ! regulation of cell projection organization +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization +is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport +is_a: GO:0060632 {is_inferred="true"} ! regulation of microtubule-based movement + +[Term] +id: GO:1905800 ! negative regulation of intraciliary retrograde transport +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization +is_a: GO:0051271 {is_inferred="true"} ! negative regulation of cellular component movement +is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport +is_a: GO:1905799 {is_inferred="true"} ! regulation of intraciliary retrograde transport + +[Term] +id: GO:1905801 ! positive regulation of intraciliary retrograde transport +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization +is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization +is_a: GO:0051272 {is_inferred="true"} ! positive regulation of cellular component movement +is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport +is_a: GO:1905799 {is_inferred="true"} ! regulation of intraciliary retrograde transport + +[Term] +id: GO:1905802 ! regulation of cellular response to manganese ion +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process + +[Term] +id: GO:1905803 ! negative regulation of cellular response to manganese ion +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus +is_a: GO:1905802 {is_inferred="true"} ! regulation of cellular response to manganese ion + +[Term] +id: GO:1905804 ! positive regulation of cellular response to manganese ion +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:1905802 {is_inferred="true"} ! regulation of cellular response to manganese ion + +[Term] +id: GO:1905805 ! excitatory synapse disassembly +is_a: GO:0098883 {is_inferred="true"} ! synapse disassembly + +[Term] +id: GO:1905806 ! regulation of synapse disassembly +is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization + +[Term] +id: GO:1905807 ! negative regulation of synapse disassembly +is_a: GO:1905806 {is_inferred="true"} ! regulation of synapse disassembly +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization + +[Term] +id: GO:1905808 ! positive regulation of synapse disassembly +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:1905806 {is_inferred="true"} ! regulation of synapse disassembly + +[Term] +id: GO:1905809 ! negative regulation of synapse organization +is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -91400,9 +91498,9 @@ [Term] id: GO:2000297 ! negative regulation of synapse maturation -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:0051961 {is_inferred="true"} ! negative regulation of nervous system development is_a: GO:0090128 {is_inferred="true"} ! regulation of synapse maturation +is_a: GO:1905809 {is_inferred="true"} ! negative regulation of synapse organization [Term] id: GO:2000298 ! regulation of Rho-dependent protein serine/threonine kinase activity ------------------------------------------------------------------------ r38005 | tberardi | 2017-01-11 15:30:02 -0800 (Wed, 11 Jan 2017) | 1 line third attempt changes in entailments ------------------------------------------------------------------------ r37999 | dph | 2017-01-11 10:56:40 -0800 (Wed, 11 Jan 2017) | 2 lines GH12888-partially completed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37999) +++ go_inferences.obo (working copy) @@ -17461,10 +17461,6 @@ is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process [Term] -id: GO:0019284 ! L-methionine biosynthetic process from S-adenosylmethionine -is_a: GO:0046500 {is_inferred="true"} ! S-adenosylmethionine metabolic process - -[Term] id: GO:0019285 ! glycine betaine biosynthetic process from choline is_a: GO:0019695 {is_inferred="true"} ! choline metabolic process is_a: GO:0031456 {is_inferred="true"} ! glycine betaine biosynthetic process ------------------------------------------------------------------------ r37997 | dph | 2017-01-11 10:36:33 -0800 (Wed, 11 Jan 2017) | 2 lines GH12898-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37997) +++ go_inferences.obo (working copy) @@ -5316,10 +5316,6 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] -id: GO:0005952 ! cAMP-dependent protein kinase complex -is_a: GO:1902554 {is_inferred="true"} ! serine/threonine protein kinase complex - -[Term] id: GO:0005953 ! CAAX-protein geranylgeranyltransferase complex is_a: GO:1990234 {is_inferred="true"} ! transferase complex ------------------------------------------------------------------------ r37995 | paola | 2017-01-11 06:54:24 -0800 (Wed, 11 Jan 2017) | 5 lines GH TPV single stranded and double stranded DNA binding #12130 - work in progress - added links: changes in entailments ------------------------------------------------------------------------ r37989 | paola | 2017-01-11 05:01:44 -0800 (Wed, 11 Jan 2017) | 3 lines GH NTR: spore-bearing structure development #12605 - closed - added ‘spore-bearing structure formation’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37989) +++ go_inferences.obo (working copy) @@ -58167,6 +58167,10 @@ is_a: GO:0050880 {is_inferred="true"} ! regulation of blood vessel size [Term] +id: GO:0097751 ! spore-bearing structure formation +is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction + +[Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly ------------------------------------------------------------------------ r37987 | paola | 2017-01-11 03:45:49 -0800 (Wed, 11 Jan 2017) | 3 lines GH NTR: spore-bearing structure development #12605 - work in progress - edited ‘spore-bearing organ development’ changes in entailments ------------------------------------------------------------------------ r37982 | dph | 2017-01-10 13:29:59 -0800 (Tue, 10 Jan 2017) | 2 lines GH12907-closed changes in entailments ------------------------------------------------------------------------ r37977 | dph | 2017-01-10 09:13:52 -0800 (Tue, 10 Jan 2017) | 2 lines Corrected logical definition for T cell aggregation. GH12904-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37977) +++ go_inferences.obo (working copy) @@ -25440,17 +25440,8 @@ is_a: GO:0009820 {is_inferred="true"} ! alkaloid metabolic process [Term] -id: GO:0033077 ! T cell differentiation in thymus -is_a: GO:0071594 {is_inferred="true"} ! thymocyte aggregation - -[Term] -id: GO:0033080 ! immature T cell proliferation in thymus -is_a: GO:0071594 {is_inferred="true"} ! thymocyte aggregation - -[Term] id: GO:0033081 ! regulation of T cell differentiation in thymus is_a: GO:0045580 {is_inferred="true"} ! regulation of T cell differentiation -is_a: GO:2000398 {is_inferred="true"} ! regulation of thymocyte aggregation [Term] id: GO:0033082 ! regulation of extrathymic T cell differentiation @@ -25469,7 +25460,6 @@ id: GO:0033085 ! negative regulation of T cell differentiation in thymus is_a: GO:0033081 {is_inferred="true"} ! regulation of T cell differentiation in thymus is_a: GO:0045581 {is_inferred="true"} ! negative regulation of T cell differentiation -is_a: GO:2000399 {is_inferred="true"} ! negative regulation of thymocyte aggregation [Term] id: GO:0033086 ! negative regulation of extrathymic T cell differentiation @@ -25491,7 +25481,6 @@ id: GO:0033089 ! positive regulation of T cell differentiation in thymus is_a: GO:0033081 {is_inferred="true"} ! regulation of T cell differentiation in thymus is_a: GO:0045582 {is_inferred="true"} ! positive regulation of T cell differentiation -is_a: GO:2000400 {is_inferred="true"} ! positive regulation of thymocyte aggregation [Term] id: GO:0033090 ! positive regulation of extrathymic T cell differentiation @@ -91918,18 +91907,15 @@ [Term] id: GO:2000398 ! regulation of thymocyte aggregation -is_a: GO:0002694 {is_inferred="true"} ! regulation of leukocyte activation is_a: GO:1903037 {is_inferred="true"} ! regulation of leukocyte cell-cell adhesion [Term] id: GO:2000399 ! negative regulation of thymocyte aggregation -is_a: GO:0002695 {is_inferred="true"} ! negative regulation of leukocyte activation is_a: GO:1903038 {is_inferred="true"} ! negative regulation of leukocyte cell-cell adhesion is_a: GO:2000398 {is_inferred="true"} ! regulation of thymocyte aggregation [Term] id: GO:2000400 ! positive regulation of thymocyte aggregation -is_a: GO:0002696 {is_inferred="true"} ! positive regulation of leukocyte activation is_a: GO:1903039 {is_inferred="true"} ! positive regulation of leukocyte cell-cell adhesion is_a: GO:2000398 {is_inferred="true"} ! regulation of thymocyte aggregation ------------------------------------------------------------------------ r37971 | termgenie | 2017-01-10 04:24:22 -0800 (Tue, 10 Jan 2017) | 2 lines TermGenie commit for user: hattrill reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37971) +++ go_inferences.obo (working copy) @@ -88984,6 +88984,10 @@ is_a: GO:1905790 {is_inferred="true"} ! regulation of mechanosensory behavior [Term] +id: GO:1905793 ! protein localization to pericentriolar material +is_a: GO:0071539 {is_inferred="true"} ! protein localization to centrosome + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37967 | dph | 2017-01-09 09:40:08 -0800 (Mon, 09 Jan 2017) | 2 lines Replaced the directly negatively regulates relation with negatively regulates realtion between the decoy death receptor and the death receptor. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37967) +++ go_inferences.obo (working copy) @@ -4618,7 +4618,7 @@ [Term] id: GO:0005040 ! decoy death receptor activity -is_a: GO:0030547 {is_inferred="true"} ! receptor inhibitor activity +is_a: GO:0098772 {is_inferred="true"} ! molecular function regulator [Term] id: GO:0005043 ! netrin receptor activity involved in chemorepulsion ------------------------------------------------------------------------ r37965 | dph | 2017-01-09 09:33:07 -0800 (Mon, 09 Jan 2017) | 2 lines GH12901-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37965) +++ go_inferences.obo (working copy) @@ -4617,6 +4617,10 @@ is_a: GO:0099589 {is_inferred="true"} ! serotonin receptor activity [Term] +id: GO:0005040 ! decoy death receptor activity +is_a: GO:0030547 {is_inferred="true"} ! receptor inhibitor activity + +[Term] id: GO:0005043 ! netrin receptor activity involved in chemorepulsion is_a: GO:0005042 {is_inferred="true"} ! netrin receptor activity ------------------------------------------------------------------------ r37963 | termgenie | 2017-01-09 07:51:27 -0800 (Mon, 09 Jan 2017) | 4 lines TermGenie commit for user: hbye reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37963) +++ go_inferences.obo (working copy) @@ -88932,6 +88932,54 @@ is_a: GO:0006337 {is_inferred="true"} ! nucleosome disassembly [Term] +id: GO:1905784 ! regulation of anaphase-promoting complex-dependent catabolic process +is_a: GO:0032434 {is_inferred="true"} ! regulation of proteasomal ubiquitin-dependent protein catabolic process + +[Term] +id: GO:1905785 ! negative regulation of anaphase-promoting complex-dependent catabolic process +is_a: GO:0032435 {is_inferred="true"} ! negative regulation of proteasomal ubiquitin-dependent protein catabolic process +is_a: GO:1905784 {is_inferred="true"} ! regulation of anaphase-promoting complex-dependent catabolic process + +[Term] +id: GO:1905786 ! positive regulation of anaphase-promoting complex-dependent catabolic process +is_a: GO:0032436 {is_inferred="true"} ! positive regulation of proteasomal ubiquitin-dependent protein catabolic process +is_a: GO:1905784 {is_inferred="true"} ! regulation of anaphase-promoting complex-dependent catabolic process + +[Term] +id: GO:1905787 ! regulation of detection of mechanical stimulus involved in sensory perception of touch +is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0051931 {is_inferred="true"} ! regulation of sensory perception + +[Term] +id: GO:1905788 ! negative regulation of detection of mechanical stimulus involved in sensory perception of touch +is_a: GO:0031645 {is_inferred="true"} ! negative regulation of neurological system process +is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:1905787 {is_inferred="true"} ! regulation of detection of mechanical stimulus involved in sensory perception of touch + +[Term] +id: GO:1905789 ! positive regulation of detection of mechanical stimulus involved in sensory perception of touch +is_a: GO:0031646 {is_inferred="true"} ! positive regulation of neurological system process +is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:1905787 {is_inferred="true"} ! regulation of detection of mechanical stimulus involved in sensory perception of touch + +[Term] +id: GO:1905790 ! regulation of mechanosensory behavior +is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus +is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior + +[Term] +id: GO:1905791 ! negative regulation of mechanosensory behavior +is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus +is_a: GO:0048521 {is_inferred="true"} ! negative regulation of behavior +is_a: GO:1905790 {is_inferred="true"} ! regulation of mechanosensory behavior + +[Term] +id: GO:1905792 ! positive regulation of mechanosensory behavior +is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus +is_a: GO:0048520 {is_inferred="true"} ! positive regulation of behavior +is_a: GO:1905790 {is_inferred="true"} ! regulation of mechanosensory behavior + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37924 | mcourtot | 2017-01-06 07:20:53 -0800 (Fri, 06 Jan 2017) | 1 line removed uberon title changes in entailments ------------------------------------------------------------------------ r37917 | tberardi | 2017-01-05 17:11:07 -0800 (Thu, 05 Jan 2017) | 1 line GH12895 def change and NTR: GO:0045251 electron transfer flavoprotein complex - def change only, in progress changes in entailments ------------------------------------------------------------------------ r37915 | tberardi | 2017-01-05 17:05:54 -0800 (Thu, 05 Jan 2017) | 1 line GH#12889 ntr: Las1 Complex - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37915) +++ go_inferences.obo (working copy) @@ -57489,6 +57489,10 @@ is_a: GO:0003002 {is_inferred="true"} ! regionalization [Term] +id: GO:0090730 ! Las1 complex +is_a: GO:0044445 {is_inferred="true"} ! cytosolic part + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate ------------------------------------------------------------------------ r37913 | termgenie | 2017-01-05 08:54:12 -0800 (Thu, 05 Jan 2017) | 2 lines TermGenie commit for user: ValWood reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37913) +++ go_inferences.obo (working copy) @@ -88924,6 +88924,10 @@ is_a: GO:1905780 {is_inferred="true"} ! regulation of phosphatidylserine exposure on apoptotic cell surface [Term] +id: GO:1905783 ! CENP-A containing nucleosome disassembly +is_a: GO:0006337 {is_inferred="true"} ! nucleosome disassembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37907 | mcourtot | 2017-01-05 03:03:48 -0800 (Thu, 05 Jan 2017) | 1 line renamed GO:0071629 ubiquitin-dependent of catabolism of misfolded proteins by cytoplasm-associated proteasome and GO:0071630 ubiquitin-dependent of catabolism of misfolded proteins by nucleus-associated proteasome as per https://github.com/geneontology/go-ontology/issues/12370 changes in entailments ------------------------------------------------------------------------ r37903 | tberardi | 2017-01-04 17:20:44 -0800 (Wed, 04 Jan 2017) | 1 line GH12894 mp: GO:1904834 nuclear CENP-A containing chromatin - closed changes in entailments ------------------------------------------------------------------------ r37900 | tberardi | 2017-01-04 17:09:23 -0800 (Wed, 04 Jan 2017) | 1 line GH12892 Transcription occurs_in nuclear chromatin - closed changes in entailments ------------------------------------------------------------------------ r37899 | tberardi | 2017-01-04 17:02:24 -0800 (Wed, 04 Jan 2017) | 1 line GH#12887 TPV N-glycan processing - closed changes in entailments ------------------------------------------------------------------------ r37895 | termgenie | 2017-01-04 09:10:07 -0800 (Wed, 04 Jan 2017) | 4 lines TermGenie commit for user: vanaukenk reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37895) +++ go_inferences.obo (working copy) @@ -88906,6 +88906,24 @@ is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity [Term] +id: GO:1905780 ! regulation of phosphatidylserine exposure on apoptotic cell surface +is_a: GO:0097035 {is_inferred="true"} ! regulation of membrane lipid distribution +is_a: GO:1900117 {is_inferred="true"} ! regulation of execution phase of apoptosis +is_a: GO:1903729 {is_inferred="true"} ! regulation of plasma membrane organization + +[Term] +id: GO:1905781 ! negative regulation of phosphatidylserine exposure on apoptotic cell surface +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:1900118 {is_inferred="true"} ! negative regulation of execution phase of apoptosis +is_a: GO:1905780 {is_inferred="true"} ! regulation of phosphatidylserine exposure on apoptotic cell surface + +[Term] +id: GO:1905782 ! positive regulation of phosphatidylserine exposure on apoptotic cell surface +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:1900119 {is_inferred="true"} ! positive regulation of execution phase of apoptosis +is_a: GO:1905780 {is_inferred="true"} ! regulation of phosphatidylserine exposure on apoptotic cell surface + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37887 | cjm | 2017-01-03 13:57:12 -0800 (Tue, 03 Jan 2017) | 1 line adding melanosome never in Caenorhabditis. https://github.com/geneontology/go-ontology/issues/12699 changes in entailments ------------------------------------------------------------------------ r37861 | davidos | 2016-12-31 09:18:24 -0800 (Sat, 31 Dec 2016) | 1 line fixed bad xref changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37861) +++ go_inferences.obo (working copy) @@ -4633,10 +4633,6 @@ is_a: GO:0019966 {is_inferred="true"} ! interleukin-1 binding [Term] -id: GO:0005224 ! ATP-binding and phosphorylation-dependent chloride channel activity -is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity - -[Term] id: GO:0005231 ! excitatory extracellular ligand-gated ion channel activity is_a: GO:0004888 {is_inferred="true"} ! transmembrane signaling receptor activity @@ -4649,8 +4645,9 @@ is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity [Term] -id: GO:0005260 ! channel-conductance-controlling ATPase activity -is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity +id: GO:0005260 ! intracellular ATPase-gated chloride channel activity +is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0005274 ! allantoin uptake transmembrane transporter activity @@ -8047,6 +8044,18 @@ is_a: GO:0051350 {is_inferred="true"} ! negative regulation of lyase activity [Term] +id: GO:0007198 ! adenylate cyclase-inhibiting serotonin receptor signaling pathway +is_a: GO:0098664 {is_inferred="true"} ! G-protein coupled serotonin receptor signaling pathway + +[Term] +id: GO:0007208 ! phospholipase C-activating serotonin receptor signaling pathway +is_a: GO:0098664 {is_inferred="true"} ! G-protein coupled serotonin receptor signaling pathway + +[Term] +id: GO:0007210 ! serotonin receptor signaling pathway +is_a: GO:0007165 {is_inferred="true"} ! signal transduction + +[Term] id: GO:0007213 ! G-protein coupled acetylcholine receptor signaling pathway is_a: GO:0095500 {is_inferred="true"} ! acetylcholine receptor signaling pathway @@ -8538,7 +8547,7 @@ [Term] id: GO:0008328 ! ionotropic glutamate receptor complex -is_a: GO:0034702 {is_inferred="true"} ! ion channel complex +is_a: GO:0034703 {is_inferred="true"} ! cation channel complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex is_a: GO:0098878 {is_inferred="true"} ! neurotransmitter receptor complex @@ -8694,6 +8703,10 @@ is_a: GO:0022402 {is_inferred="true"} ! cell cycle process [Term] +id: GO:0008610 ! lipid biosynthetic process +is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process + +[Term] id: GO:0008611 ! ether lipid biosynthetic process is_a: GO:0046485 {is_inferred="true"} ! ether lipid metabolic process is_a: GO:0046504 {is_inferred="true"} ! glycerol ether biosynthetic process @@ -14352,7 +14365,7 @@ [Term] id: GO:0015277 ! kainate selective glutamate receptor activity -is_a: GO:0005267 {is_inferred="true"} ! potassium channel activity +is_a: GO:0005249 {is_inferred="true"} ! voltage-gated potassium channel activity is_a: GO:0005272 {is_inferred="true"} ! sodium channel activity is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity @@ -16629,10 +16642,6 @@ is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] -id: GO:0017146 ! NMDA selective glutamate receptor complex -is_a: GO:0034703 {is_inferred="true"} ! cation channel complex - -[Term] id: GO:0017148 ! negative regulation of translation is_a: GO:0006417 {is_inferred="true"} ! regulation of translation is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression @@ -19567,7 +19576,7 @@ is_a: GO:0099604 {is_inferred="true"} ! ligand-gated calcium channel activity [Term] -id: GO:0022850 ! serotonin-gated cation channel activity +id: GO:0022850 ! serotonin-gated cation-selective channel activity is_a: GO:0099589 {is_inferred="true"} ! serotonin receptor activity [Term] @@ -25101,7 +25110,7 @@ [Term] id: GO:0032983 ! kainate selective glutamate receptor complex -is_a: GO:0034705 {is_inferred="true"} ! potassium channel complex +is_a: GO:0008076 {is_inferred="true"} ! voltage-gated potassium channel complex is_a: GO:0034706 {is_inferred="true"} ! sodium channel complex [Term] @@ -58542,6 +58551,19 @@ is_a: GO:0098660 {is_inferred="true"} ! inorganic ion transmembrane transport [Term] +id: GO:0098664 ! G-protein coupled serotonin receptor signaling pathway +is_a: GO:0007186 {is_inferred="true"} ! G-protein coupled receptor signaling pathway +is_a: GO:0007210 {is_inferred="true"} ! serotonin receptor signaling pathway + +[Term] +id: GO:0098665 ! serotonin receptor complex +is_a: GO:0043235 {is_inferred="true"} ! receptor complex + +[Term] +id: GO:0098666 ! G-protein coupled serotonin receptor complex +is_a: GO:0098665 {is_inferred="true"} ! serotonin receptor complex + +[Term] id: GO:0098700 ! neurotransmitter loading into synaptic vesicle is_a: GO:0006836 {is_inferred="true"} ! neurotransmitter transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell @@ -83254,7 +83276,8 @@ [Term] id: GO:1904602 ! serotonin-activated cation-selective channel complex is_a: GO:0034703 {is_inferred="true"} ! cation channel complex -is_a: GO:0043235 {is_inferred="true"} ! receptor complex +is_a: GO:0098665 {is_inferred="true"} ! serotonin receptor complex +is_a: GO:0098878 {is_inferred="true"} ! neurotransmitter receptor complex [Term] id: GO:1904603 ! regulation of advanced glycation end-product receptor activity @@ -91386,9 +91409,9 @@ [Term] id: GO:2000311 ! regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity -is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity is_a: GO:1900449 {is_inferred="true"} ! regulation of glutamate receptor signaling pathway +is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity [Term] id: GO:2000312 ! regulation of kainate selective glutamate receptor activity @@ -94558,10 +94581,10 @@ [Term] id: GO:2000969 ! positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity -is_a: GO:0032414 {is_inferred="true"} ! positive regulation of ion transmembrane transporter activity is_a: GO:1900451 {is_inferred="true"} ! positive regulation of glutamate receptor signaling pathway is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity is_a: GO:2000311 {is_inferred="true"} ! regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity +is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] id: GO:2000970 ! regulation of detection of glucose ------------------------------------------------------------------------ r37789 | dph | 2016-12-23 05:30:42 -0800 (Fri, 23 Dec 2016) | 2 lines Removed incorrect parent from GO:1905773 based on editors discussion yesterday. changes in entailments ------------------------------------------------------------------------ r37784 | hjd | 2016-12-22 14:10:41 -0800 (Thu, 22 Dec 2016) | 2 lines removed double quotes with two singles changes in entailments ------------------------------------------------------------------------ r37782 | hjd | 2016-12-22 14:01:25 -0800 (Thu, 22 Dec 2016) | 2 lines fixed weird truncated defs in plant activity terms changes in entailments ------------------------------------------------------------------------ r37766 | dph | 2016-12-22 06:13:22 -0800 (Thu, 22 Dec 2016) | 2 lines GH12885-closed. changes in entailments ------------------------------------------------------------------------ r37766 | dph | 2016-12-22 06:13:22 -0800 (Thu, 22 Dec 2016) | 2 lines GH12885-closed. changes in entailments ------------------------------------------------------------------------ r37764 | dph | 2016-12-22 05:56:36 -0800 (Thu, 22 Dec 2016) | 2 lines Modified GO:1905773 to try to make the reasoner place it correctly, but was unsuccessful. Instead, I remove the logical def and placed it manually in the ontology. GH12884-closed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37764) +++ go_inferences.obo (working copy) @@ -88852,10 +88852,6 @@ is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation [Term] -id: GO:1905773 ! 8-hydroxy-2'-deoxyguanosine binding -is_a: GO:0005488 {is_inferred="true"} ! binding - -[Term] id: GO:1905774 ! regulation of DNA helicase activity is_a: GO:0051095 {is_inferred="true"} ! regulation of helicase activity is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding ------------------------------------------------------------------------ r37762 | termgenie | 2016-12-22 05:36:24 -0800 (Thu, 22 Dec 2016) | 4 lines TermGenie commit for user: NancyCampbell reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37762) +++ go_inferences.obo (working copy) @@ -70485,17 +70485,19 @@ [Term] id: GO:1901917 ! regulation of exoribonuclease activity is_a: GO:0060700 {is_inferred="true"} ! regulation of ribonuclease activity +is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity [Term] id: GO:1901918 ! negative regulation of exoribonuclease activity is_a: GO:0060701 {is_inferred="true"} ! negative regulation of ribonuclease activity is_a: GO:1901917 {is_inferred="true"} ! regulation of exoribonuclease activity +is_a: GO:1905778 {is_inferred="true"} ! negative regulation of exonuclease activity [Term] id: GO:1901919 ! positive regulation of exoribonuclease activity -is_a: GO:0032075 {is_inferred="true"} ! positive regulation of nuclease activity is_a: GO:0051254 {is_inferred="true"} ! positive regulation of RNA metabolic process is_a: GO:1901917 {is_inferred="true"} ! regulation of exoribonuclease activity +is_a: GO:1905779 {is_inferred="true"} ! positive regulation of exonuclease activity [Term] id: GO:1901920 ! peptidyl-tyrosine dephosphorylation involved in activation of protein kinase activity @@ -72842,16 +72844,19 @@ [Term] id: GO:1902392 ! regulation of exodeoxyribonuclease activity is_a: GO:0032070 {is_inferred="true"} ! regulation of deoxyribonuclease activity +is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity [Term] id: GO:1902393 ! negative regulation of exodeoxyribonuclease activity is_a: GO:0032076 {is_inferred="true"} ! negative regulation of deoxyribonuclease activity is_a: GO:1902392 {is_inferred="true"} ! regulation of exodeoxyribonuclease activity +is_a: GO:1905778 {is_inferred="true"} ! negative regulation of exonuclease activity [Term] id: GO:1902394 ! positive regulation of exodeoxyribonuclease activity is_a: GO:0032077 {is_inferred="true"} ! positive regulation of deoxyribonuclease activity is_a: GO:1902392 {is_inferred="true"} ! regulation of exodeoxyribonuclease activity +is_a: GO:1905779 {is_inferred="true"} ! positive regulation of exonuclease activity [Term] id: GO:1902395 ! regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity @@ -74675,12 +74680,12 @@ [Term] id: GO:1902799 ! regulation of phosphodiesterase I activity -is_a: GO:0032069 {is_inferred="true"} ! regulation of nuclease activity +is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity [Term] id: GO:1902800 ! positive regulation of phosphodiesterase I activity -is_a: GO:0032075 {is_inferred="true"} ! positive regulation of nuclease activity is_a: GO:1902799 {is_inferred="true"} ! regulation of phosphodiesterase I activity +is_a: GO:1905779 {is_inferred="true"} ! positive regulation of exonuclease activity [Term] id: GO:1902801 ! regulation of heterochromatin island assembly @@ -88847,6 +88852,10 @@ is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation [Term] +id: GO:1905773 ! 8-hydroxy-2'-deoxyguanosine binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] id: GO:1905774 ! regulation of DNA helicase activity is_a: GO:0051095 {is_inferred="true"} ! regulation of helicase activity is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding @@ -88864,6 +88873,20 @@ is_a: GO:1905774 {is_inferred="true"} ! regulation of DNA helicase activity [Term] +id: GO:1905777 ! regulation of exonuclease activity +is_a: GO:0032069 {is_inferred="true"} ! regulation of nuclease activity + +[Term] +id: GO:1905778 ! negative regulation of exonuclease activity +is_a: GO:0032074 {is_inferred="true"} ! negative regulation of nuclease activity +is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity + +[Term] +id: GO:1905779 ! positive regulation of exonuclease activity +is_a: GO:0032075 {is_inferred="true"} ! positive regulation of nuclease activity +is_a: GO:1905777 {is_inferred="true"} ! regulation of exonuclease activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37758 | dph | 2016-12-21 12:57:50 -0800 (Wed, 21 Dec 2016) | 2 lines GH12883-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37758) +++ go_inferences.obo (working copy) @@ -16371,6 +16371,10 @@ is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy [Term] +id: GO:0016243 ! regulation of autophagosome size +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization + +[Term] id: GO:0016247 ! channel regulator activity is_a: GO:0098772 {is_inferred="true"} ! molecular function regulator ------------------------------------------------------------------------ r37756 | dph | 2016-12-21 12:47:07 -0800 (Wed, 21 Dec 2016) | 2 lines Checked terms and move appropriate terms under supramolecular fiber. GH12640-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37756) +++ go_inferences.obo (working copy) @@ -19950,6 +19950,7 @@ [Term] id: GO:0030239 ! myofibril assembly is_a: GO:0070925 {is_inferred="true"} ! organelle assembly +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:0030243 ! cellulose metabolic process @@ -46249,6 +46250,7 @@ is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0060298 ! positive regulation of sarcomere organization @@ -46257,6 +46259,7 @@ is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization is_a: GO:0060297 {is_inferred="true"} ! regulation of sarcomere organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0060299 ! negative regulation of sarcomere organization @@ -46265,6 +46268,7 @@ is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization is_a: GO:0060297 {is_inferred="true"} ! regulation of sarcomere organization is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0060300 ! regulation of cytokine activity @@ -86640,6 +86644,7 @@ is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation [Term] @@ -86647,6 +86652,7 @@ is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation @@ -86655,6 +86661,7 @@ is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation ------------------------------------------------------------------------ r37754 | dph | 2016-12-21 12:23:04 -0800 (Wed, 21 Dec 2016) | 2 lines Merged fibril into supramolecular fiber as part of GH12640. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37754) +++ go_inferences.obo (working copy) @@ -33022,10 +33022,6 @@ is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] -id: GO:0043205 ! fibril -is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component - -[Term] id: GO:0043208 ! glycosphingolipid binding is_a: GO:0046625 {is_inferred="true"} ! sphingolipid binding is_a: GO:0051861 {is_inferred="true"} ! glycolipid binding ------------------------------------------------------------------------ r37752 | termgenie | 2016-12-21 10:42:33 -0800 (Wed, 21 Dec 2016) | 4 lines TermGenie commit for user: NancyCampbell reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37752) +++ go_inferences.obo (working copy) @@ -31884,16 +31884,14 @@ [Term] id: GO:0042661 ! regulation of mesodermal cell fate specification -is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation is_a: GO:0042659 {is_inferred="true"} ! regulation of cell fate specification -is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development +is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation [Term] id: GO:0042662 ! negative regulation of mesodermal cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0042661 {is_inferred="true"} ! regulation of mesodermal cell fate specification -is_a: GO:2000381 {is_inferred="true"} ! negative regulation of mesoderm development -is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation +is_a: GO:1905771 {is_inferred="true"} ! negative regulation of mesodermal cell differentiation [Term] id: GO:0042663 ! regulation of endodermal cell fate specification @@ -41304,29 +41302,25 @@ [Term] id: GO:0048334 ! regulation of mesodermal cell fate determination is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment -is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation -is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development +is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation [Term] id: GO:0048335 ! negative regulation of mesodermal cell fate determination is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0048334 {is_inferred="true"} ! regulation of mesodermal cell fate determination -is_a: GO:2000381 {is_inferred="true"} ! negative regulation of mesoderm development -is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation +is_a: GO:1905771 {is_inferred="true"} ! negative regulation of mesodermal cell differentiation [Term] id: GO:0048336 ! positive regulation of mesodermal cell fate determination is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:0048334 {is_inferred="true"} ! regulation of mesodermal cell fate determination -is_a: GO:2000382 {is_inferred="true"} ! positive regulation of mesoderm development -is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation +is_a: GO:1905772 {is_inferred="true"} ! positive regulation of mesodermal cell differentiation [Term] id: GO:0048337 ! positive regulation of mesodermal cell fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification is_a: GO:0042661 {is_inferred="true"} ! regulation of mesodermal cell fate specification -is_a: GO:2000382 {is_inferred="true"} ! positive regulation of mesoderm development -is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation +is_a: GO:1905772 {is_inferred="true"} ! positive regulation of mesodermal cell differentiation [Term] id: GO:0048339 ! paraxial mesoderm development @@ -73109,22 +73103,19 @@ [Term] id: GO:1902449 ! regulation of ATP-dependent DNA helicase activity is_a: GO:0043462 {is_inferred="true"} ! regulation of ATPase activity -is_a: GO:0051095 {is_inferred="true"} ! regulation of helicase activity -is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding +is_a: GO:1905774 {is_inferred="true"} ! regulation of DNA helicase activity [Term] id: GO:1902450 ! negative regulation of ATP-dependent DNA helicase activity is_a: GO:0032780 {is_inferred="true"} ! negative regulation of ATPase activity -is_a: GO:0051097 {is_inferred="true"} ! negative regulation of helicase activity is_a: GO:1902449 {is_inferred="true"} ! regulation of ATP-dependent DNA helicase activity -is_a: GO:1905463 {is_inferred="true"} ! negative regulation of DNA duplex unwinding +is_a: GO:1905775 {is_inferred="true"} ! negative regulation of DNA helicase activity [Term] id: GO:1902451 ! positive regulation of ATP-dependent DNA helicase activity is_a: GO:0032781 {is_inferred="true"} ! positive regulation of ATPase activity -is_a: GO:0051096 {is_inferred="true"} ! positive regulation of helicase activity is_a: GO:1902449 {is_inferred="true"} ! regulation of ATP-dependent DNA helicase activity -is_a: GO:1905464 {is_inferred="true"} ! positive regulation of DNA duplex unwinding +is_a: GO:1905776 {is_inferred="true"} ! positive regulation of DNA helicase activity [Term] id: GO:1902455 ! negative regulation of stem cell population maintenance @@ -88829,6 +88820,43 @@ is_a: GO:1905767 {is_inferred="true"} ! regulation of double-stranded telomeric DNA binding [Term] +id: GO:1905770 ! regulation of mesodermal cell differentiation +is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation +is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development + +[Term] +id: GO:1905771 ! negative regulation of mesodermal cell differentiation +is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation +is_a: GO:2000381 {is_inferred="true"} ! negative regulation of mesoderm development +is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation + +[Term] +id: GO:1905772 ! positive regulation of mesodermal cell differentiation +is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:1905770 {is_inferred="true"} ! regulation of mesodermal cell differentiation +is_a: GO:2000382 {is_inferred="true"} ! positive regulation of mesoderm development +is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation + +[Term] +id: GO:1905774 ! regulation of DNA helicase activity +is_a: GO:0051095 {is_inferred="true"} ! regulation of helicase activity +is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding + +[Term] +id: GO:1905775 ! negative regulation of DNA helicase activity +is_a: GO:0051097 {is_inferred="true"} ! negative regulation of helicase activity +is_a: GO:1905463 {is_inferred="true"} ! negative regulation of DNA duplex unwinding +is_a: GO:1905774 {is_inferred="true"} ! regulation of DNA helicase activity + +[Term] +id: GO:1905776 ! positive regulation of DNA helicase activity +is_a: GO:0051096 {is_inferred="true"} ! positive regulation of helicase activity +is_a: GO:1905464 {is_inferred="true"} ! positive regulation of DNA duplex unwinding +is_a: GO:1905774 {is_inferred="true"} ! regulation of DNA helicase activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37749 | dph | 2016-12-21 10:21:48 -0800 (Wed, 21 Dec 2016) | 2 lines Renamed and defined the fibril organization terms to become supramolecular fiber organization terms. Also renamed and modified the regulation terms as part of GH12640. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37749) +++ go_inferences.obo (working copy) @@ -7794,7 +7794,7 @@ [Term] id: GO:0007015 ! actin filament organization -is_a: GO:0016043 {is_inferred="true"} ! cellular component organization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:0007016 ! cytoskeletal anchoring at plasma membrane @@ -7805,10 +7805,15 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] +id: GO:0007019 ! microtubule depolymerization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization + +[Term] id: GO:0007026 ! negative regulation of microtubule depolymerization is_a: GO:0031111 {is_inferred="true"} ! negative regulation of microtubule polymerization or depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization is_a: GO:1901880 {is_inferred="true"} ! negative regulation of protein depolymerization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0007027 ! negative regulation of axonemal microtubule depolymerization @@ -8349,6 +8354,10 @@ is_a: GO:0007423 {is_inferred="true"} ! sensory organ development [Term] +id: GO:0008064 ! regulation of actin polymerization or depolymerization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization + +[Term] id: GO:0008068 ! extracellular-glutamate-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity @@ -8507,7 +8516,7 @@ [Term] id: GO:0008302 ! female germline ring canal formation, actin assembly -is_a: GO:0022414 {is_inferred="true"} ! reproductive process +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] id: GO:0008303 ! caspase complex @@ -19837,6 +19846,7 @@ [Term] id: GO:0030199 ! collagen fibril organization is_a: GO:0071822 {is_inferred="true"} ! protein complex subunit organization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:0030200 ! heparan sulfate proteoglycan catabolic process @@ -20735,21 +20745,25 @@ id: GO:0030835 ! negative regulation of actin filament depolymerization is_a: GO:0030834 {is_inferred="true"} ! regulation of actin filament depolymerization is_a: GO:1901880 {is_inferred="true"} ! negative regulation of protein depolymerization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0030836 ! positive regulation of actin filament depolymerization is_a: GO:0030834 {is_inferred="true"} ! regulation of actin filament depolymerization is_a: GO:1901881 {is_inferred="true"} ! positive regulation of protein depolymerization +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0030837 ! negative regulation of actin filament polymerization is_a: GO:0030833 {is_inferred="true"} ! regulation of actin filament polymerization is_a: GO:0032272 {is_inferred="true"} ! negative regulation of protein polymerization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0030838 ! positive regulation of actin filament polymerization is_a: GO:0030833 {is_inferred="true"} ! regulation of actin filament polymerization is_a: GO:0032273 {is_inferred="true"} ! positive regulation of protein polymerization +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0030839 ! regulation of intermediate filament polymerization @@ -21176,11 +21190,13 @@ id: GO:0031113 ! regulation of microtubule polymerization is_a: GO:0031110 {is_inferred="true"} ! regulation of microtubule polymerization or depolymerization is_a: GO:0032271 {is_inferred="true"} ! regulation of protein polymerization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0031114 ! regulation of microtubule depolymerization is_a: GO:0031110 {is_inferred="true"} ! regulation of microtubule polymerization or depolymerization is_a: GO:1901879 {is_inferred="true"} ! regulation of protein depolymerization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0031115 ! negative regulation of microtubule polymerization @@ -21187,6 +21203,7 @@ is_a: GO:0031111 {is_inferred="true"} ! negative regulation of microtubule polymerization or depolymerization is_a: GO:0031113 {is_inferred="true"} ! regulation of microtubule polymerization is_a: GO:0032272 {is_inferred="true"} ! negative regulation of protein polymerization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0031116 ! positive regulation of microtubule polymerization @@ -21193,6 +21210,7 @@ is_a: GO:0031112 {is_inferred="true"} ! positive regulation of microtubule polymerization or depolymerization is_a: GO:0031113 {is_inferred="true"} ! regulation of microtubule polymerization is_a: GO:0032273 {is_inferred="true"} ! positive regulation of protein polymerization +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0031117 ! positive regulation of microtubule depolymerization @@ -21199,8 +21217,13 @@ is_a: GO:0031112 {is_inferred="true"} ! positive regulation of microtubule polymerization or depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization is_a: GO:1901881 {is_inferred="true"} ! positive regulation of protein depolymerization +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] +id: GO:0031122 ! cytoplasmic microtubule organization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization + +[Term] id: GO:0031135 ! negative regulation of conjugation is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0046999 {is_inferred="true"} ! regulation of conjugation @@ -22986,15 +23009,18 @@ id: GO:0032231 ! regulation of actin filament bundle assembly is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:0032232 ! negative regulation of actin filament bundle assembly is_a: GO:0032231 {is_inferred="true"} ! regulation of actin filament bundle assembly +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0032233 ! positive regulation of actin filament bundle assembly is_a: GO:0032231 {is_inferred="true"} ! regulation of actin filament bundle assembly is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0032238 ! adenosine transport @@ -35136,6 +35162,10 @@ is_a: GO:0051493 {is_inferred="true"} ! regulation of cytoskeleton organization [Term] +id: GO:0045109 ! intermediate filament organization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization + +[Term] id: GO:0045113 ! regulation of integrin biosynthetic process is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process is_a: GO:1903729 {is_inferred="true"} ! regulation of plasma membrane organization @@ -40448,6 +40478,10 @@ is_a: GO:2001141 {is_inferred="true"} ! regulation of RNA biosynthetic process [Term] +id: GO:0046785 ! microtubule polymerization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization + +[Term] id: GO:0046807 ! viral scaffold assembly and maintenance is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly @@ -43172,10 +43206,12 @@ [Term] id: GO:0051126 ! negative regulation of actin nucleation is_a: GO:0051125 {is_inferred="true"} ! regulation of actin nucleation +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization [Term] id: GO:0051127 ! positive regulation of actin nucleation is_a: GO:0051125 {is_inferred="true"} ! regulation of actin nucleation +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization [Term] id: GO:0051133 ! regulation of NK T cell activation @@ -75166,18 +75202,18 @@ is_a: GO:2000785 {is_inferred="true"} ! regulation of autophagosome assembly [Term] -id: GO:1902903 ! regulation of fibril organization +id: GO:1902903 ! regulation of supramolecular fiber organization is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] -id: GO:1902904 ! negative regulation of fibril organization +id: GO:1902904 ! negative regulation of supramolecular fiber organization is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization -is_a: GO:1902903 {is_inferred="true"} ! regulation of fibril organization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] -id: GO:1902905 ! positive regulation of fibril organization +id: GO:1902905 ! positive regulation of supramolecular fiber organization is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization -is_a: GO:1902903 {is_inferred="true"} ! regulation of fibril organization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization [Term] id: GO:1902906 ! proteasome storage granule assembly @@ -76138,6 +76174,7 @@ [Term] id: GO:1903117 ! regulation of actin filament organization involved in cytokinetic actomyosin contractile ring assembly +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization is_a: GO:2000431 {is_inferred="true"} ! regulation of cytokinesis, actomyosin contractile ring assembly [Term] @@ -77824,11 +77861,13 @@ [Term] id: GO:1903481 ! negative regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization is_a: GO:1903480 {is_inferred="true"} ! regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly is_a: GO:1903500 {is_inferred="true"} ! negative regulation of mitotic actomyosin contractile ring assembly [Term] id: GO:1903482 ! positive regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization is_a: GO:1903480 {is_inferred="true"} ! regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly is_a: GO:1903501 {is_inferred="true"} ! positive regulation of mitotic actomyosin contractile ring assembly @@ -80420,15 +80459,18 @@ [Term] id: GO:1904026 ! regulation of collagen fibril organization +is_a: GO:1902903 {is_inferred="true"} ! regulation of supramolecular fiber organization is_a: GO:1903053 {is_inferred="true"} ! regulation of extracellular matrix organization [Term] id: GO:1904027 ! negative regulation of collagen fibril organization +is_a: GO:1902904 {is_inferred="true"} ! negative regulation of supramolecular fiber organization is_a: GO:1903054 {is_inferred="true"} ! negative regulation of extracellular matrix organization is_a: GO:1904026 {is_inferred="true"} ! regulation of collagen fibril organization [Term] id: GO:1904028 ! positive regulation of collagen fibril organization +is_a: GO:1902905 {is_inferred="true"} ! positive regulation of supramolecular fiber organization is_a: GO:1903055 {is_inferred="true"} ! positive regulation of extracellular matrix organization is_a: GO:1904026 {is_inferred="true"} ! regulation of collagen fibril organization @@ -87965,6 +88007,7 @@ [Term] id: GO:1905590 ! fibronectin fibril organization is_a: GO:0030198 {is_inferred="true"} ! extracellular matrix organization +is_a: GO:0097435 {is_inferred="true"} ! supramolecular fiber organization [Term] id: GO:1905591 ! regulation of optical nerve axon regeneration ------------------------------------------------------------------------ r37743 | dph | 2016-12-21 04:54:09 -0800 (Wed, 21 Dec 2016) | 2 lines Merged extracellular fibril organization with fibril organization using Protege as part of GH12640. changes in entailments ------------------------------------------------------------------------ r37741 | paola | 2016-12-21 03:39:09 -0800 (Wed, 21 Dec 2016) | 2 lines GH NTR: Endosomal membrane tubulation #12583 - closed - see ticket for details changes in entailments ------------------------------------------------------------------------ r37739 | paola | 2016-12-21 03:09:44 -0800 (Wed, 21 Dec 2016) | 2 lines GH NTR: Endosomal membrane tubulation #12583 - work in progress - edited GO:0097320 ‘membrane tubulation’ changes in entailments ------------------------------------------------------------------------ r37735 | dph | 2016-12-20 12:20:43 -0800 (Tue, 20 Dec 2016) | 2 lines Removed inconsistent relations and logical definitions from fibril organization and extracellular fibril organization terms. These terms will eventually be merged and renamed supramolecular fiber organization. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37736) +++ go_inferences.obo (working copy) @@ -57967,10 +57967,6 @@ is_a: GO:1905270 {is_inferred="true"} ! Meynert cell differentiation [Term] -id: GO:0097435 ! fibril organization -is_a: GO:0030198 {is_inferred="true"} ! extracellular matrix organization - -[Term] id: GO:0097444 ! spine apparatus is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0044463 {is_inferred="true"} ! cell projection part @@ -75171,17 +75167,17 @@ [Term] id: GO:1902903 ! regulation of fibril organization -is_a: GO:1903053 {is_inferred="true"} ! regulation of extracellular matrix organization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1902904 ! negative regulation of fibril organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1902903 {is_inferred="true"} ! regulation of fibril organization -is_a: GO:1903054 {is_inferred="true"} ! negative regulation of extracellular matrix organization [Term] id: GO:1902905 ! positive regulation of fibril organization +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1902903 {is_inferred="true"} ! regulation of fibril organization -is_a: GO:1903055 {is_inferred="true"} ! positive regulation of extracellular matrix organization [Term] id: GO:1902906 ! proteasome storage granule assembly ------------------------------------------------------------------------ r37733 | dph | 2016-12-20 11:46:35 -0800 (Tue, 20 Dec 2016) | 2 lines GH12882-closed changes in entailments ------------------------------------------------------------------------ r37731 | tberardi | 2016-12-20 11:17:43 -0800 (Tue, 20 Dec 2016) | 1 line GH12766 Review MF term GO:0050827 'toxin receptor binding' - final bit of work, merging changes in entailments ------------------------------------------------------------------------ r37729 | termgenie | 2016-12-20 10:46:49 -0800 (Tue, 20 Dec 2016) | 4 lines TermGenie commit for user: NancyCampbell reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37729) +++ go_inferences.obo (working copy) @@ -88759,6 +88759,37 @@ is_a: GO:0032403 {is_inferred="true"} ! protein complex binding [Term] +id: GO:1905764 ! regulation of protection from non-homologous end joining at telomere +is_a: GO:1904353 {is_inferred="true"} ! regulation of telomere capping +is_a: GO:1904505 {is_inferred="true"} ! regulation of telomere maintenance in response to DNA damage + +[Term] +id: GO:1905765 ! negative regulation of protection from non-homologous end joining at telomere +is_a: GO:1904354 {is_inferred="true"} ! negative regulation of telomere capping +is_a: GO:1904506 {is_inferred="true"} ! negative regulation of telomere maintenance in response to DNA damage +is_a: GO:1905764 {is_inferred="true"} ! regulation of protection from non-homologous end joining at telomere + +[Term] +id: GO:1905766 ! positive regulation of protection from non-homologous end joining at telomere +is_a: GO:1904355 {is_inferred="true"} ! positive regulation of telomere capping +is_a: GO:1904507 {is_inferred="true"} ! positive regulation of telomere maintenance in response to DNA damage +is_a: GO:1905764 {is_inferred="true"} ! regulation of protection from non-homologous end joining at telomere + +[Term] +id: GO:1905767 ! regulation of double-stranded telomeric DNA binding +is_a: GO:1904742 {is_inferred="true"} ! regulation of telomeric DNA binding + +[Term] +id: GO:1905768 ! negative regulation of double-stranded telomeric DNA binding +is_a: GO:1904743 {is_inferred="true"} ! negative regulation of telomeric DNA binding +is_a: GO:1905767 {is_inferred="true"} ! regulation of double-stranded telomeric DNA binding + +[Term] +id: GO:1905769 ! positive regulation of double-stranded telomeric DNA binding +is_a: GO:1904744 {is_inferred="true"} ! positive regulation of telomeric DNA binding +is_a: GO:1905767 {is_inferred="true"} ! regulation of double-stranded telomeric DNA binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37726 | dph | 2016-12-20 09:38:50 -0800 (Tue, 20 Dec 2016) | 2 lines Added namespace for new term. changes in entailments ------------------------------------------------------------------------ r37723 | paola | 2016-12-20 08:16:55 -0800 (Tue, 20 Dec 2016) | 3 lines GH NTR: "anatomical structure formation involved in reproduction (asexual and sexual) for conidium formation relationship #12745 - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37723) +++ go_inferences.obo (working copy) @@ -27564,6 +27564,14 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0034298 ! arthrospore formation +is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis + +[Term] +id: GO:0034299 ! reproductive blastospore formation +is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis + +[Term] id: GO:0034304 ! actinomycete-type spore formation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process @@ -55088,7 +55096,6 @@ [Term] id: GO:0075306 ! regulation of conidium formation -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0034305 {is_inferred="true"} ! regulation of asexual sporulation is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development ------------------------------------------------------------------------ r37721 | dph | 2016-12-20 07:49:15 -0800 (Tue, 20 Dec 2016) | 2 lines Added capable of part of relationship to GO:1990130. changes in entailments ------------------------------------------------------------------------ r37719 | dph | 2016-12-20 06:55:28 -0800 (Tue, 20 Dec 2016) | 2 lines GH12879-closed changes in entailments ------------------------------------------------------------------------ r37712 | dph | 2016-12-20 05:25:25 -0800 (Tue, 20 Dec 2016) | 2 lines GH12500-closed Added gluconate pathway synonym to GO:0061679 changes in entailments ------------------------------------------------------------------------ r37710 | davidos | 2016-12-19 23:37:25 -0800 (Mon, 19 Dec 2016) | 28 lines ### Fixed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37710) +++ go_inferences.obo (working copy) @@ -76092,11 +76092,9 @@ [Term] id: GO:1903108 ! regulation of transcription from mitochondrial promoter is_a: GO:0006355 {is_inferred="true"} ! regulation of transcription, DNA-templated -is_a: GO:0010821 {is_inferred="true"} ! regulation of mitochondrion organization [Term] id: GO:1903109 ! positive regulation of transcription from mitochondrial promoter -is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated is_a: GO:1903108 {is_inferred="true"} ! regulation of transcription from mitochondrial promoter @@ -89585,6 +89583,10 @@ is_a: GO:0044440 {is_inferred="true"} ! endosomal part [Term] +id: GO:1990755 ! mitotic spindle microtubule depolymerization +is_a: GO:0007019 {is_inferred="true"} ! microtubule depolymerization + +[Term] id: GO:1990758 ! mitotic sister chromatid biorientation is_a: GO:0031134 {is_inferred="true"} ! sister chromatid biorientation ------------------------------------------------------------------------ r37706 | tberardi | 2016-12-19 15:43:26 -0800 (Mon, 19 Dec 2016) | 1 line added xps for pos, neg reg of brood size terms changes in entailments ------------------------------------------------------------------------ r37704 | tberardi | 2016-12-19 15:34:24 -0800 (Mon, 19 Dec 2016) | 1 line GH12766 Review MF term GO:0050827 'toxin receptor binding' - closed changes in entailments ------------------------------------------------------------------------ r37702 | tberardi | 2016-12-19 15:18:54 -0800 (Mon, 19 Dec 2016) | 1 line GH12869 Regualtion term for GO:0060378 - closed changes in entailments ------------------------------------------------------------------------ r37700 | dph | 2016-12-19 15:02:15 -0800 (Mon, 19 Dec 2016) | 2 lines GH12875-closed changes in entailments ------------------------------------------------------------------------ r37698 | dph | 2016-12-19 14:53:29 -0800 (Mon, 19 Dec 2016) | 2 lines GH12874-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37698) +++ go_inferences.obo (working copy) @@ -7866,7 +7866,6 @@ [Term] id: GO:0007052 ! mitotic spindle organization is_a: GO:0007051 {is_inferred="true"} ! spindle organization -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:0007053 ! spindle assembly involved in male meiosis @@ -46028,7 +46027,7 @@ [Term] id: GO:0060236 ! regulation of mitotic spindle organization -is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle +is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division is_a: GO:0090224 {is_inferred="true"} ! regulation of spindle organization [Term] @@ -49072,12 +49071,10 @@ [Term] id: GO:0061804 ! mitotic spindle elongation during mitotic prophase is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization -is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:0061805 ! mitotic spindle elongation during mitotic anaphase is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization -is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:0061816 ! proteaphagy @@ -56812,7 +56809,6 @@ id: GO:0090307 ! mitotic spindle assembly is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:0051225 {is_inferred="true"} ! spindle assembly -is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:0090308 ! regulation of methylation-dependent chromatin silencing @@ -69164,7 +69160,6 @@ [Term] id: GO:1901673 ! regulation of mitotic spindle assembly -is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division is_a: GO:0060236 {is_inferred="true"} ! regulation of mitotic spindle organization is_a: GO:0090169 {is_inferred="true"} ! regulation of spindle assembly @@ -83621,9 +83616,8 @@ [Term] id: GO:1904687 ! positive regulation of mitotic spindle disassembly -is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization -is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process is_a: GO:1904686 {is_inferred="true"} ! regulation of mitotic spindle disassembly [Term] @@ -89651,7 +89645,7 @@ [Term] id: GO:1990810 ! microtubule anchoring at mitotic spindle pole body -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process +is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:1990818 ! L-arginine transmembrane export from vacuole ------------------------------------------------------------------------ r37695 | dph | 2016-12-19 14:39:17 -0800 (Mon, 19 Dec 2016) | 2 lines GH12868-closed changes in entailments ------------------------------------------------------------------------ r37693 | paola | 2016-12-19 09:56:42 -0800 (Mon, 19 Dec 2016) | 2 lines GH request taxon constraint for milk ejection #11995 - work in progress - see ticket for details changes in entailments ------------------------------------------------------------------------ r37687 | paola | 2016-12-19 02:33:07 -0800 (Mon, 19 Dec 2016) | 3 lines GH GO:0003729 mRNA binding is currently child of poly(A) RNA binding #11022 - work in progress - fixed typos in def and comment of ‘poly(A) RNA binding’ changes in entailments ------------------------------------------------------------------------ r37685 | paola | 2016-12-18 23:45:52 -0800 (Sun, 18 Dec 2016) | 2 lines GH Incorrect is_a relationship "photoreceptor cell cilium" GO:0097733 #12871 - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37685) +++ go_inferences.obo (working copy) @@ -2442,30 +2442,10 @@ is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] -id: GO:0002554 ! serotonin secretion by platelet -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] -id: GO:0002555 ! histamine secretion by platelet -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] -id: GO:0002556 ! serotonin secretion by basophil -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] -id: GO:0002557 ! histamine secretion by basophil -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0002575 ! basophil chemotaxis is_a: GO:0071621 {is_inferred="true"} ! granulocyte chemotaxis [Term] -id: GO:0002576 ! platelet degranulation -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process @@ -8081,6 +8061,10 @@ is_a: GO:0046330 {is_inferred="true"} ! positive regulation of JNK cascade [Term] +id: GO:0007267 ! cell-cell signaling +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0007268 ! chemical synaptic transmission is_a: GO:0098916 {is_inferred="true"} ! anterograde trans-synaptic signaling @@ -8270,10 +8254,6 @@ is_a: GO:0060429 {is_inferred="true"} ! epithelium development [Term] -id: GO:0007488 ! histoblast morphogenesis -is_a: GO:0000902 {is_inferred="true"} ! cell morphogenesis - -[Term] id: GO:0007503 ! fat body development is_a: GO:0060612 {is_inferred="true"} ! adipose tissue development @@ -8304,7 +8284,7 @@ [Term] id: GO:0007543 ! sex determination, somatic-gonadal interaction -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] id: GO:0007553 ! regulation of ecdysteroid metabolic process @@ -10585,7 +10565,7 @@ [Term] id: GO:0009875 ! pollen-pistil interaction -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] id: GO:0009876 ! pollen adhesion @@ -19294,6 +19274,10 @@ is_a: GO:0048870 {is_inferred="true"} ! cell motility [Term] +id: GO:0021807 ! motogenic signaling initiating cell movement in cerebral cortex +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0021814 ! cell motility involved in cerebral cortex radial glia guided migration is_a: GO:0048870 {is_inferred="true"} ! cell motility @@ -19322,6 +19306,14 @@ is_a: GO:0050919 {is_inferred="true"} ! negative chemotaxis [Term] +id: GO:0021837 ! motogenic signaling involved in postnatal olfactory bulb interneuron migration +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] +id: GO:0021838 ! motogenic signaling involved in interneuron migration from the subpallium to the cortex +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0021841 ! chemoattraction involved in interneuron migration from the subpallium to the cortex is_a: GO:0050918 {is_inferred="true"} ! positive chemotaxis @@ -21259,7 +21251,6 @@ [Term] id: GO:0031152 ! aggregation involved in sorocarp development is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0031155 ! regulation of reproductive fruiting body development @@ -26139,11 +26130,11 @@ [Term] id: GO:0033370 ! maintenance of protein location in mast cell secretory granule -is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell +is_a: GO:0051651 {is_inferred="true"} ! maintenance of location in cell [Term] id: GO:0033377 ! maintenance of protein location in T cell secretory granule -is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell +is_a: GO:0051651 {is_inferred="true"} ! maintenance of location in cell [Term] id: GO:0033383 ! geranyl diphosphate metabolic process @@ -28764,6 +28755,10 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] +id: GO:0035426 ! extracellular matrix-cell signaling +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0035428 ! hexose transmembrane transport is_a: GO:0008645 {is_inferred="true"} ! hexose transport is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport @@ -30989,10 +30984,6 @@ is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly [Term] -id: GO:0042262 ! DNA protection -is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process - -[Term] id: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity is_a: GO:0001910 {is_inferred="true"} ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002715 {is_inferred="true"} ! regulation of natural killer cell mediated immunity @@ -33142,13 +33133,8 @@ is_a: GO:0007043 {is_inferred="true"} ! cell-cell junction assembly [Term] -id: GO:0043299 ! leukocyte degranulation -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0043300 ! regulation of leukocyte degranulation is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization is_a: GO:1903305 {is_inferred="true"} ! regulation of regulated secretory pathway [Term] @@ -40020,7 +40006,6 @@ [Term] id: GO:0046595 ! establishment of pole plasm mRNA localization is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] @@ -50142,10 +50127,6 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0070560 ! protein secretion by platelet -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0070562 ! regulation of vitamin D receptor signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels @@ -60183,13 +60164,8 @@ is_a: GO:0098576 {is_inferred="true"} ! lumenal side of membrane [Term] -id: GO:0099622 ! cardiac muscle cell membrane repolarization -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell - -[Term] id: GO:0099623 ! regulation of cardiac muscle cell membrane repolarization is_a: GO:0060306 {is_inferred="true"} ! regulation of membrane repolarization -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization [Term] id: GO:0099624 ! atrial cardiac muscle cell membrane repolarization @@ -68939,10 +68915,6 @@ is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity [Term] -id: GO:1901619 ! tRNA methylation in response to nitrogen starvation -is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process - -[Term] id: GO:1901620 ! regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning is_a: GO:0008589 {is_inferred="true"} ! regulation of smoothened signaling pathway is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development ------------------------------------------------------------------------ r37639 | dph | 2016-12-15 17:03:40 -0800 (Thu, 15 Dec 2016) | 2 lines Added mouse slim to the ontology. changes in entailments ------------------------------------------------------------------------ r37637 | termgenie | 2016-12-15 15:16:07 -0800 (Thu, 15 Dec 2016) | 3 lines TermGenie commit for user: mah11 reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37637) +++ go_inferences.obo (working copy) @@ -88780,6 +88780,14 @@ is_a: GO:0044877 {is_inferred="true"} ! macromolecular complex binding [Term] +id: GO:1905762 ! CCR4-NOT complex binding +is_a: GO:0032403 {is_inferred="true"} ! protein complex binding + +[Term] +id: GO:1905763 ! MTREC complex binding +is_a: GO:0032403 {is_inferred="true"} ! protein complex binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37623 | dph | 2016-12-14 08:21:53 -0800 (Wed, 14 Dec 2016) | 2 lines GH11048-closed changes in entailments ------------------------------------------------------------------------ r37621 | termgenie | 2016-12-14 07:15:38 -0800 (Wed, 14 Dec 2016) | 2 lines TermGenie commit for user: ukemi reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37621) +++ go_inferences.obo (working copy) @@ -88776,6 +88776,10 @@ is_a: GO:1990752 {is_inferred="true"} ! microtubule end [Term] +id: GO:1905761 ! SCF ubiquitin ligase complex binding +is_a: GO:0044877 {is_inferred="true"} ! macromolecular complex binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37619 | dph | 2016-12-14 06:52:57 -0800 (Wed, 14 Dec 2016) | 2 lines GH12863-closed changes in entailments ------------------------------------------------------------------------ r37611 | termgenie | 2016-12-13 18:05:29 -0800 (Tue, 13 Dec 2016) | 4 lines TermGenie commit for user: ValWood reviewed by tberardini changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37612) +++ go_inferences.obo (working copy) @@ -75114,6 +75114,7 @@ [Term] id: GO:1902888 ! protein localization to astral microtubule is_a: GO:1902889 {is_inferred="true"} ! protein localization to spindle microtubule +is_a: GO:1905755 {is_inferred="true"} ! protein localization to cytoplasmic microtubule [Term] id: GO:1902889 ! protein localization to spindle microtubule @@ -82844,6 +82845,7 @@ [Term] id: GO:1904518 ! protein localization to cytoplasmic microtubule plus-end is_a: GO:1904825 {is_inferred="true"} ! protein localization to microtubule plus-end +is_a: GO:1905755 {is_inferred="true"} ! protein localization to cytoplasmic microtubule [Term] id: GO:1904519 ! protein localization to microtubule minus-end @@ -88744,6 +88746,28 @@ is_a: GO:1905752 {is_inferred="true"} ! regulation of argininosuccinate synthase activity [Term] +id: GO:1905754 ! ascospore-type prospore nucleus +is_a: GO:0005634 {is_inferred="true"} ! nucleus + +[Term] +id: GO:1905755 ! protein localization to cytoplasmic microtubule +is_a: GO:0035372 {is_inferred="true"} ! protein localization to microtubule + +[Term] +id: GO:1905756 ! regulation of primary cell septum biogenesis +is_a: GO:0032955 {is_inferred="true"} ! regulation of barrier septum assembly + +[Term] +id: GO:1905757 ! negative regulation of primary cell septum biogenesis +is_a: GO:0010974 {is_inferred="true"} ! negative regulation of barrier septum assembly +is_a: GO:1905756 {is_inferred="true"} ! regulation of primary cell septum biogenesis + +[Term] +id: GO:1905758 ! positive regulation of primary cell septum biogenesis +is_a: GO:0010973 {is_inferred="true"} ! positive regulation of barrier septum assembly +is_a: GO:1905756 {is_inferred="true"} ! regulation of primary cell septum biogenesis + +[Term] id: GO:1905759 ! post-anaphase array microtubule is_a: GO:0005874 {is_inferred="true"} ! microtubule ------------------------------------------------------------------------ r37607 | dph | 2016-12-13 13:08:47 -0800 (Tue, 13 Dec 2016) | 2 lines GH12860-closed changes in entailments ------------------------------------------------------------------------ r37597 | davidos | 2016-12-13 05:35:26 -0800 (Tue, 13 Dec 2016) | 1 line Fixed EC pair changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37604) +++ go_inferences.obo (working copy) @@ -96200,6 +96200,14 @@ is_a: GOCHE:26155 {is_inferred="true"} ! substance with plant growth regulator biological role [Term] +id: GOCHE:50113 ! substance with androgen hormone role +is_a: GOCHE:24621 {is_inferred="true"} ! substance with hormone biological role + +[Term] +id: GOCHE:50114 ! substance with estrogen hormone role +is_a: GOCHE:24621 {is_inferred="true"} ! substance with hormone biological role + +[Term] id: GOCHE:51086 ! substance with chemical property is_a: CHEBI:24431 {is_inferred="true"} ! chemical entity ------------------------------------------------------------------------ r37597 | davidos | 2016-12-13 05:35:26 -0800 (Tue, 13 Dec 2016) | 1 line Fixed EC pair changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37597) +++ go_inferences.obo (working copy) @@ -840,6 +840,10 @@ is_a: GO:0098610 {is_inferred="true"} ! adhesion between unicellular organisms [Term] +id: GO:0000775 ! chromosome, centromeric region +is_a: GO:0098687 {is_inferred="true"} ! chromosomal region + +[Term] id: GO:0000777 ! condensed chromosome kinetochore is_a: GO:0000776 {is_inferred="true"} ! kinetochore @@ -858,6 +862,10 @@ is_a: GO:0044454 {is_inferred="true"} ! nuclear chromosome part [Term] +id: GO:0000781 ! chromosome, telomeric region +is_a: GO:0098687 {is_inferred="true"} ! chromosomal region + +[Term] id: GO:0000783 ! nuclear telomere cap complex is_a: GO:0000782 {is_inferred="true"} ! telomere cap complex is_a: GO:0044454 {is_inferred="true"} ! nuclear chromosome part @@ -4149,6 +4157,14 @@ is_a: GO:0090500 {is_inferred="true"} ! endocardial cushion to mesenchymal transition [Term] +id: GO:0003228 ! atrial cardiac muscle tissue development +is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development + +[Term] +id: GO:0003229 ! ventricular cardiac muscle tissue development +is_a: GO:0048738 {is_inferred="true"} ! cardiac muscle tissue development + +[Term] id: GO:0003245 ! cardiac muscle tissue growth involved in heart morphogenesis is_a: GO:0003241 {is_inferred="true"} ! growth involved in heart morphogenesis is_a: GO:0055017 {is_inferred="true"} ! cardiac muscle tissue growth @@ -4356,6 +4372,10 @@ is_a: GO:0045446 {is_inferred="true"} ! endothelial cell differentiation [Term] +id: GO:0003350 ! pulmonary myocardium development +is_a: GO:0014706 {is_inferred="true"} ! striated muscle tissue development + +[Term] id: GO:0003352 ! regulation of cilium movement is_a: GO:0060632 {is_inferred="true"} ! regulation of microtubule-based movement @@ -4649,6 +4669,10 @@ is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity [Term] +id: GO:0005260 ! channel-conductance-controlling ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0005274 ! allantoin uptake transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity @@ -4962,10 +4986,6 @@ is_a: GO:0098651 {is_inferred="true"} ! basement membrane collagen trimer [Term] -id: GO:0005589 ! collagen type VI trimer -is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component - -[Term] id: GO:0005591 ! collagen type VIII trimer is_a: GO:0030935 {is_inferred="true"} ! sheet-forming collagen trimer is_a: GO:0098651 {is_inferred="true"} ! basement membrane collagen trimer @@ -8263,6 +8283,10 @@ is_a: GO:0060485 {is_inferred="true"} ! mesenchyme development [Term] +id: GO:0007519 ! skeletal muscle tissue development +is_a: GO:0014706 {is_inferred="true"} ! striated muscle tissue development + +[Term] id: GO:0007528 ! neuromuscular junction development is_a: GO:0050808 {is_inferred="true"} ! synapse organization @@ -8642,6 +8666,10 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] +id: GO:0008555 ! chloride-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0008556 ! potassium-transporting ATPase activity is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity @@ -13554,17 +13582,17 @@ [Term] id: GO:0014708 ! regulation of somitomeric trunk muscle development -is_a: GO:0048641 {is_inferred="true"} ! regulation of skeletal muscle tissue development +is_a: GO:0048634 {is_inferred="true"} ! regulation of muscle organ development [Term] id: GO:0014709 ! positive regulation of somitomeric trunk muscle development is_a: GO:0014708 {is_inferred="true"} ! regulation of somitomeric trunk muscle development -is_a: GO:0048643 {is_inferred="true"} ! positive regulation of skeletal muscle tissue development +is_a: GO:0048636 {is_inferred="true"} ! positive regulation of muscle organ development [Term] id: GO:0014710 ! negative regulation of somitomeric trunk muscle development is_a: GO:0014708 {is_inferred="true"} ! regulation of somitomeric trunk muscle development -is_a: GO:0048642 {is_inferred="true"} ! negative regulation of skeletal muscle tissue development +is_a: GO:0048635 {is_inferred="true"} ! negative regulation of muscle organ development [Term] id: GO:0014711 ! regulation of branchiomeric skeletal muscle development @@ -14424,6 +14452,10 @@ is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity [Term] +id: GO:0015411 ! taurine-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0015413 ! nickel-transporting ATPase activity is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity is_a: GO:0072509 {is_inferred="true"} ! divalent inorganic cation transmembrane transporter activity @@ -14444,6 +14476,18 @@ is_a: GO:0090482 {is_inferred="true"} ! vitamin transmembrane transporter activity [Term] +id: GO:0015424 ! amino acid-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] +id: GO:0015430 ! glycerol-3-phosphate-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] +id: GO:0015432 ! bile acid-exporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0015444 ! magnesium-importing ATPase activity is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity @@ -14644,6 +14688,10 @@ is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity [Term] +id: GO:0015610 ! glycerol phosphate-importing ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0015619 ! thiamine pyrophosphate-transporting ATPase activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity @@ -15872,6 +15920,10 @@ is_a: GO:1902600 {is_inferred="true"} ! hydrogen ion transmembrane transport [Term] +id: GO:0015991 ! ATP hydrolysis coupled proton transport +is_a: GO:0099132 {is_inferred="true"} ! ATP hydrolysis coupled cation transmembrane transport + +[Term] id: GO:0015992 ! proton transport is_a: GO:0006818 {is_inferred="true"} ! hydrogen transport is_a: GO:0015672 {is_inferred="true"} ! monovalent inorganic cation transport @@ -25830,6 +25882,10 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:0033284 ! carboxylic acid-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity + +[Term] id: GO:0033287 ! hydroxyectoine transmembrane transporter activity is_a: GO:0015665 {is_inferred="true"} ! alcohol transmembrane transporter activity @@ -27805,6 +27861,14 @@ is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] +id: GO:0034506 ! chromosome, centromeric core domain +is_a: GO:0098687 {is_inferred="true"} ! chromosomal region + +[Term] +id: GO:0034507 ! chromosome, centromeric outer repeat region +is_a: GO:0098687 {is_inferred="true"} ! chromosomal region + +[Term] id: GO:0034516 ! response to vitamin B6 is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound @@ -40673,6 +40737,10 @@ is_a: GO:1902224 {is_inferred="true"} ! ketone body metabolic process [Term] +id: GO:0046962 ! sodium-transporting ATPase activity, rotational mechanism +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] id: GO:0046963 ! 3'-phosphoadenosine 5'-phosphosulfate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport @@ -49012,6 +49080,11 @@ is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity [Term] +id: GO:0061800 ! fibronectin fibril +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component +is_a: GO:0099512 {is_inferred="true"} ! supramolecular fiber + +[Term] id: GO:0061804 ! mitotic spindle elongation during mitotic prophase is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis @@ -57365,6 +57438,10 @@ is_a: GO:0008033 {is_inferred="true"} ! tRNA processing [Term] +id: GO:0090662 ! ATP hydrolysis coupled transmembrane transport +is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport + +[Term] id: GO:0090688 ! cleavage furrow rim is_a: GO:0032155 {is_inferred="true"} ! cell division site part @@ -57489,6 +57566,10 @@ is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] +id: GO:0097084 ! vascular smooth muscle cell development +is_a: GO:0055001 {is_inferred="true"} ! muscle cell development + +[Term] id: GO:0097089 ! methyl-branched fatty acid metabolic process is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process @@ -58393,6 +58474,18 @@ is_a: GO:0098632 {is_inferred="true"} ! protein binding involved in cell-cell adhesion [Term] +id: GO:0098643 ! banded collagen fibril +is_a: GO:0099512 {is_inferred="true"} ! supramolecular fiber + +[Term] +id: GO:0098645 ! collagen network +is_a: GO:0099081 {is_inferred="true"} ! supramolecular polymer + +[Term] +id: GO:0098647 ! collagen beaded filament +is_a: GO:0099512 {is_inferred="true"} ! supramolecular fiber + +[Term] id: GO:0098649 ! response to peptidyl-dipeptidase A inhibitor is_a: GO:0042493 {is_inferred="true"} ! response to drug @@ -59801,6 +59894,21 @@ is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component [Term] +id: GO:0099131 ! ATP hydrolysis coupled ion transmembrane transport +is_a: GO:0090662 {is_inferred="true"} ! ATP hydrolysis coupled transmembrane transport +is_a: GO:0098660 {is_inferred="true"} ! inorganic ion transmembrane transport + +[Term] +id: GO:0099132 ! ATP hydrolysis coupled cation transmembrane transport +is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport +is_a: GO:0099131 {is_inferred="true"} ! ATP hydrolysis coupled ion transmembrane transport + +[Term] +id: GO:0099133 ! ATP hydrolysis coupled anion transmembrane transport +is_a: GO:0098661 {is_inferred="true"} ! inorganic anion transmembrane transport +is_a: GO:0099131 {is_inferred="true"} ! ATP hydrolysis coupled ion transmembrane transport + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -67001,7 +67109,7 @@ [Term] id: GO:1901238 ! ATPase-coupled tungstate transmembrane transporter activity -is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity is_a: GO:1901237 {is_inferred="true"} ! tungstate transmembrane transporter activity [Term] @@ -67023,6 +67131,7 @@ [Term] id: GO:1901243 ! ATPase-coupled methionine transmembrane transporter activity is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity +is_a: GO:0043225 {is_inferred="true"} ! ATPase-coupled anion transmembrane transporter activity is_a: GO:0043865 {is_inferred="true"} ! methionine transmembrane transporter activity [Term] ------------------------------------------------------------------------ r37587 | termgenie | 2016-12-12 11:42:20 -0800 (Mon, 12 Dec 2016) | 2 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37587) +++ go_inferences.obo (working copy) @@ -88639,6 +88639,10 @@ is_a: GO:0005874 {is_inferred="true"} ! microtubule [Term] +id: GO:1905760 ! post-anaphase array microtubule end +is_a: GO:1990752 {is_inferred="true"} ! microtubule end + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37585 | termgenie | 2016-12-12 10:39:01 -0800 (Mon, 12 Dec 2016) | 2 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37585) +++ go_inferences.obo (working copy) @@ -88635,6 +88635,10 @@ is_a: GO:1905752 {is_inferred="true"} ! regulation of argininosuccinate synthase activity [Term] +id: GO:1905759 ! post-anaphase array microtubule +is_a: GO:0005874 {is_inferred="true"} ! microtubule + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37575 | termgenie | 2016-12-12 03:51:32 -0800 (Mon, 12 Dec 2016) | 3 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments ------------------------------------------------------------------------ r37575 | termgenie | 2016-12-12 03:51:32 -0800 (Mon, 12 Dec 2016) | 3 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37575) +++ go_inferences.obo (working copy) @@ -88626,6 +88626,15 @@ is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport [Term] +id: GO:1905752 ! regulation of argininosuccinate synthase activity +is_a: GO:0051340 {is_inferred="true"} ! regulation of ligase activity + +[Term] +id: GO:1905753 ! positive regulation of argininosuccinate synthase activity +is_a: GO:0051351 {is_inferred="true"} ! positive regulation of ligase activity +is_a: GO:1905752 {is_inferred="true"} ! regulation of argininosuccinate synthase activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37573 | paola | 2016-12-12 01:44:48 -0800 (Mon, 12 Dec 2016) | 2 lines Removed extra whitespace in label of GO:0060854 changes in entailments ------------------------------------------------------------------------ r37557 | termgenie | 2016-12-09 15:39:29 -0800 (Fri, 09 Dec 2016) | 4 lines TermGenie commit for user: pgarmiri reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37557) +++ go_inferences.obo (working copy) @@ -88598,6 +88598,34 @@ is_a: GO:1905744 {is_inferred="true"} ! regulation of mRNA cis splicing, via spliceosome [Term] +id: GO:1905747 ! negative regulation of saliva secretion +is_a: GO:0046877 {is_inferred="true"} ! regulation of saliva secretion +is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion +is_a: GO:0060457 {is_inferred="true"} ! negative regulation of digestive system process + +[Term] +id: GO:1905748 ! hard palate morphogenesis +is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis + +[Term] +id: GO:1905749 ! regulation of endosome to plasma membrane protein transport +is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport +is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport +is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane + +[Term] +id: GO:1905750 ! negative regulation of endosome to plasma membrane protein transport +is_a: GO:0051224 {is_inferred="true"} ! negative regulation of protein transport +is_a: GO:0090005 {is_inferred="true"} ! negative regulation of establishment of protein localization to plasma membrane +is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport + +[Term] +id: GO:1905751 ! positive regulation of endosome to plasma membrane protein transport +is_a: GO:0051222 {is_inferred="true"} ! positive regulation of protein transport +is_a: GO:0090004 {is_inferred="true"} ! positive regulation of establishment of protein localization to plasma membrane +is_a: GO:1905749 {is_inferred="true"} ! regulation of endosome to plasma membrane protein transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37552 | davidos | 2016-12-09 10:09:41 -0800 (Fri, 09 Dec 2016) | 1 line Fixed consistency issues. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37552) +++ go_inferences.obo (working copy) @@ -3235,7 +3235,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0002920 {is_inferred="true"} ! regulation of humoral immune response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:0002760 ! positive regulation of antimicrobial humoral response @@ -3243,7 +3242,6 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0002922 {is_inferred="true"} ! positive regulation of humoral immune response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process [Term] id: GO:0002761 ! regulation of myeloid leukocyte differentiation @@ -4639,6 +4637,10 @@ is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] +id: GO:0005231 ! excitatory extracellular ligand-gated ion channel activity +is_a: GO:0004888 {is_inferred="true"} ! transmembrane signaling receptor activity + +[Term] id: GO:0005242 ! inward rectifier potassium channel activity is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity @@ -8548,7 +8550,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0002921 {is_inferred="true"} ! negative regulation of humoral immune response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process [Term] id: GO:0008354 ! germ cell migration @@ -10101,7 +10102,7 @@ is_a: GO:0098543 {is_inferred="true"} ! detection of other organism [Term] -id: GO:0009615 ! response to virus +id: GO:0009616 ! virus induced gene silencing is_a: GO:0016032 {is_inferred="true"} ! viral process [Term] @@ -10962,7 +10963,6 @@ id: GO:0010112 ! regulation of systemic acquired resistance is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process is_a: GO:0045088 {is_inferred="true"} ! regulation of innate immune response [Term] @@ -10970,7 +10970,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0010112 {is_inferred="true"} ! regulation of systemic acquired resistance is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response [Term] @@ -19502,8 +19501,10 @@ is_a: GO:0005267 {is_inferred="true"} ! potassium channel activity [Term] -id: GO:0022848 ! acetylcholine-gated cation channel activity +id: GO:0022848 ! acetylcholine-gated cation-selective channel activity is_a: GO:0015464 {is_inferred="true"} ! acetylcholine receptor activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity +is_a: GO:1904315 {is_inferred="true"} ! transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential [Term] id: GO:0022849 ! glutamate-gated calcium ion channel activity @@ -21204,15 +21205,18 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] +id: GO:0031152 ! aggregation involved in sorocarp development +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] id: GO:0031155 ! regulation of reproductive fruiting body development is_a: GO:0075260 {is_inferred="true"} ! regulation of spore-bearing organ development [Term] id: GO:0031156 ! regulation of sorocarp development -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels -is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development +is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0031161 ! phosphatidylinositol catabolic process @@ -21409,14 +21413,14 @@ [Term] id: GO:0031286 ! negative regulation of sorocarp stalk cell differentiation -is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0031285 {is_inferred="true"} ! regulation of sorocarp stalk cell differentiation +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation [Term] id: GO:0031287 ! positive regulation of sorocarp stalk cell differentiation -is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication is_a: GO:0031285 {is_inferred="true"} ! regulation of sorocarp stalk cell differentiation +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation [Term] @@ -22183,7 +22187,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:0031665 ! negative regulation of lipopolysaccharide-mediated signaling pathway @@ -22191,7 +22194,6 @@ is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction is_a: GO:0031664 {is_inferred="true"} ! regulation of lipopolysaccharide-mediated signaling pathway is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process [Term] id: GO:0031666 ! positive regulation of lipopolysaccharide-mediated signaling pathway @@ -22199,7 +22201,6 @@ is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction is_a: GO:0031664 {is_inferred="true"} ! regulation of lipopolysaccharide-mediated signaling pathway is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process [Term] id: GO:0031670 ! cellular response to nutrient @@ -29984,11 +29985,6 @@ is_a: GO:0098657 {is_inferred="true"} ! import into cell [Term] -id: GO:0036360 ! sorocarp stalk morphogenesis -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0036375 ! Kibra-Ex-Mer complex is_a: GO:0044464 {is_inferred="true"} ! cell part @@ -32009,6 +32005,11 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] +id: GO:0042780 ! tRNA 3'-end processing +is_a: GO:0008033 {is_inferred="true"} ! tRNA processing +is_a: GO:0043628 {is_inferred="true"} ! ncRNA 3'-end processing + +[Term] id: GO:0042787 ! protein ubiquitination involved in ubiquitin-dependent protein catabolic process is_a: GO:0016567 {is_inferred="true"} ! protein ubiquitination @@ -41174,11 +41175,6 @@ is_a: GO:0048308 {is_inferred="true"} ! organelle inheritance [Term] -id: GO:0048315 ! conidium formation -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0048316 ! seed development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -42239,7 +42235,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process is_a: GO:0050688 {is_inferred="true"} ! regulation of defense response to virus [Term] @@ -42248,7 +42243,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:0050696 ! trichloroethylene catabolic process @@ -45869,7 +45863,10 @@ [Term] id: GO:0060176 ! regulation of aggregation involved in sorocarp development +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0031156 {is_inferred="true"} ! regulation of sorocarp development +is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels +is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress [Term] id: GO:0060178 ! regulation of exocyst localization @@ -49007,11 +49004,6 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] -id: GO:0061794 ! conidium development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0048837 {is_inferred="true"} ! sorus development - -[Term] id: GO:0061796 ! membrane addition at site of mitotic cytokinesis is_a: GO:1902410 {is_inferred="true"} ! mitotic cytokinetic process @@ -49072,7 +49064,7 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0070022 ! transforming growth factor beta receptor homodimeric complex +id: GO:0070022 ! transforming growth factor beta receptor complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex is_a: GO:1902554 {is_inferred="true"} ! serine/threonine protein kinase complex @@ -50762,8 +50754,8 @@ [Term] id: GO:0070900 ! mitochondrial tRNA modification -is_a: GO:0000963 {is_inferred="true"} ! mitochondrial RNA processing is_a: GO:0006400 {is_inferred="true"} ! tRNA modification +is_a: GO:0090646 {is_inferred="true"} ! mitochondrial tRNA processing is_a: GO:1900864 {is_inferred="true"} ! mitochondrial RNA modification [Term] @@ -55046,32 +55038,22 @@ [Term] id: GO:0075306 ! regulation of conidium formation is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:0031156 {is_inferred="true"} ! regulation of sorocarp development is_a: GO:0034305 {is_inferred="true"} ! regulation of asexual sporulation is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] id: GO:0075307 ! positive regulation of conidium formation -is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels is_a: GO:0043938 {is_inferred="true"} ! positive regulation of sporulation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0075306 {is_inferred="true"} ! regulation of conidium formation is_a: GO:1903666 {is_inferred="true"} ! positive regulation of asexual reproduction -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] id: GO:0075308 ! negative regulation of conidium formation -is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:0032108 {is_inferred="true"} ! negative regulation of response to nutrient levels is_a: GO:0043939 {is_inferred="true"} ! negative regulation of sporulation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:0075306 {is_inferred="true"} ! regulation of conidium formation is_a: GO:1903665 {is_inferred="true"} ! negative regulation of asexual reproduction -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:0075310 ! regulation of sporangium development @@ -57097,11 +57079,6 @@ is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential [Term] -id: GO:0090401 ! viral-induced premature senescence -is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction -is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process - -[Term] id: GO:0090407 ! organophosphate biosynthetic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process @@ -57383,6 +57360,11 @@ is_a: GO:0098795 {is_inferred="true"} ! mRNA cleavage involved in gene silencing [Term] +id: GO:0090646 ! mitochondrial tRNA processing +is_a: GO:0000963 {is_inferred="true"} ! mitochondrial RNA processing +is_a: GO:0008033 {is_inferred="true"} ! tRNA processing + +[Term] id: GO:0090688 ! cleavage furrow rim is_a: GO:0032155 {is_inferred="true"} ! cell division site part @@ -58075,7 +58057,9 @@ [Term] id: GO:0097745 ! mitochondrial tRNA 5'-end processing -is_a: GO:0034471 {is_inferred="true"} ! ncRNA 5'-end processing +is_a: GO:0000964 {is_inferred="true"} ! mitochondrial RNA 5'-end processing +is_a: GO:0090646 {is_inferred="true"} ! mitochondrial tRNA processing +is_a: GO:0099116 {is_inferred="true"} ! tRNA 5'-end processing [Term] id: GO:0097746 ! regulation of blood vessel diameter @@ -59784,6 +59768,11 @@ is_a: GO:0006342 {is_inferred="true"} ! chromatin silencing [Term] +id: GO:0099116 ! tRNA 5'-end processing +is_a: GO:0008033 {is_inferred="true"} ! tRNA processing +is_a: GO:0034471 {is_inferred="true"} ! ncRNA 5'-end processing + +[Term] id: GO:0099117 ! protein transport along microtubule to cell tip is_a: GO:0098840 {is_inferred="true"} ! protein transport along microtubule is_a: GO:1990151 {is_inferred="true"} ! protein localization to cell tip @@ -59794,6 +59783,24 @@ is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport [Term] +id: GO:0099123 ! somato-dendritic dopamine secretion +is_a: GO:0014046 {is_inferred="true"} ! dopamine secretion +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] +id: GO:0099124 ! axonal dopamine secretion +is_a: GO:0014046 {is_inferred="true"} ! dopamine secretion +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] +id: GO:0099125 ! PAK family kinase-Sog2 complex +is_a: GO:1902911 {is_inferred="true"} ! protein kinase complex + +[Term] +id: GO:0099126 ! transforming growth factor beta complex +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -61245,7 +61252,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1900151 ! regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay @@ -61700,7 +61706,6 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039533 {is_inferred="true"} ! regulation of MDA-5 signaling pathway -is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -61710,7 +61715,6 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway -is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -62315,7 +62319,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:2000068 {is_inferred="true"} ! regulation of defense response to insect [Term] @@ -62323,7 +62326,6 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:2000068 {is_inferred="true"} ! regulation of defense response to insect [Term] @@ -62593,7 +62595,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1900425 ! negative regulation of defense response to bacterium @@ -62600,7 +62601,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1900424 {is_inferred="true"} ! regulation of defense response to bacterium [Term] @@ -62608,7 +62608,6 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1900424 {is_inferred="true"} ! regulation of defense response to bacterium [Term] @@ -67119,19 +67118,15 @@ [Term] id: GO:1901262 ! negative regulation of sorocarp spore cell differentiation -is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication -is_a: GO:0032108 {is_inferred="true"} ! negative regulation of response to nutrient levels +is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1901261 {is_inferred="true"} ! regulation of sorocarp spore cell differentiation is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:1901263 ! positive regulation of sorocarp spore cell differentiation -is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication -is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1901261 {is_inferred="true"} ! regulation of sorocarp spore cell differentiation is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process @@ -69084,7 +69079,6 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0010112 {is_inferred="true"} ! regulation of systemic acquired resistance is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response [Term] @@ -72240,7 +72234,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1902289 ! negative regulation of defense response to oomycetes @@ -72247,7 +72240,6 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1902288 {is_inferred="true"} ! regulation of defense response to oomycetes [Term] @@ -72255,7 +72247,6 @@ is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1902288 {is_inferred="true"} ! regulation of defense response to oomycetes [Term] @@ -75730,15 +75721,16 @@ [Term] id: GO:1903048 ! regulation of acetylcholine-gated cation channel activity -is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity -is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity +is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential +is_a: GO:0098962 {is_inferred="true"} ! regulation of postsynaptic neurotransmitter receptor activity +is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity [Term] id: GO:1903049 ! negative regulation of acetylcholine-gated cation channel activity -is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction -is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity +is_a: GO:0090394 {is_inferred="true"} ! negative regulation of excitatory postsynaptic potential is_a: GO:1903048 {is_inferred="true"} ! regulation of acetylcholine-gated cation channel activity is_a: GO:2000272 {is_inferred="true"} ! negative regulation of receptor activity +is_a: GO:2001258 {is_inferred="true"} ! negative regulation of cation channel activity [Term] id: GO:1903050 ! regulation of proteolysis involved in cellular protein catabolic process @@ -82207,7 +82199,6 @@ is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:1904416 ! negative regulation of xenophagy @@ -82215,7 +82206,6 @@ is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:1904415 {is_inferred="true"} ! regulation of xenophagy [Term] @@ -82224,7 +82214,6 @@ is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:1904415 {is_inferred="true"} ! regulation of xenophagy [Term] @@ -85250,7 +85239,6 @@ id: GO:1905035 ! negative regulation of antifungal innate immune response is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response is_a: GO:1905034 {is_inferred="true"} ! regulation of antifungal innate immune response @@ -85258,7 +85246,6 @@ id: GO:1905036 ! positive regulation of antifungal innate immune response is_a: GO:0002833 {is_inferred="true"} ! positive regulation of response to biotic stimulus is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response is_a: GO:1905034 {is_inferred="true"} ! regulation of antifungal innate immune response @@ -89965,7 +89952,6 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] id: GO:2000069 ! regulation of post-embryonic root development ------------------------------------------------------------------------ r37531 | paola | 2016-12-07 07:06:09 -0800 (Wed, 07 Dec 2016) | 2 lines Added synonyms to 'centriole' as raised during revision of cilia GO paper. changes in entailments ------------------------------------------------------------------------ r37529 | termgenie | 2016-12-07 06:23:49 -0800 (Wed, 07 Dec 2016) | 4 lines TermGenie commit for user: ValWood reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37529) +++ go_inferences.obo (working copy) @@ -88597,6 +88597,20 @@ is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell [Term] +id: GO:1905744 ! regulation of mRNA cis splicing, via spliceosome +is_a: GO:0048024 {is_inferred="true"} ! regulation of mRNA splicing, via spliceosome + +[Term] +id: GO:1905745 ! negative regulation of mRNA cis splicing, via spliceosome +is_a: GO:0048025 {is_inferred="true"} ! negative regulation of mRNA splicing, via spliceosome +is_a: GO:1905744 {is_inferred="true"} ! regulation of mRNA cis splicing, via spliceosome + +[Term] +id: GO:1905746 ! positive regulation of mRNA cis splicing, via spliceosome +is_a: GO:0048026 {is_inferred="true"} ! positive regulation of mRNA splicing, via spliceosome +is_a: GO:1905744 {is_inferred="true"} ! regulation of mRNA cis splicing, via spliceosome + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37527 | davidos | 2016-12-06 19:21:28 -0800 (Tue, 06 Dec 2016) | 1 line P-body; tRNA proc; transport to cell tip changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37527) +++ go_inferences.obo (working copy) @@ -58813,6 +58813,7 @@ id: GO:0098840 ! protein transport along microtubule is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0010970 {is_inferred="true"} ! transport along microtubule +is_a: GO:0099118 {is_inferred="true"} ! microtubule-based protein transport [Term] id: GO:0098841 ! protein localization to cell division site after cytokinesis @@ -59757,6 +59758,7 @@ id: GO:0099110 ! microtubule polymerization based protein transport to cell tip cortex is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0099112 {is_inferred="true"} ! microtubule polymerization based protein transport +is_a: GO:0099118 {is_inferred="true"} ! microtubule-based protein transport is_a: GO:1990896 {is_inferred="true"} ! protein localization to cell cortex of cell tip [Term] @@ -59782,6 +59784,16 @@ is_a: GO:0006342 {is_inferred="true"} ! chromatin silencing [Term] +id: GO:0099117 ! protein transport along microtubule to cell tip +is_a: GO:0098840 {is_inferred="true"} ! protein transport along microtubule +is_a: GO:1990151 {is_inferred="true"} ! protein localization to cell tip + +[Term] +id: GO:0099118 ! microtubule-based protein transport +is_a: GO:0015031 {is_inferred="true"} ! protein transport +is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region ------------------------------------------------------------------------ r37523 | paola | 2016-12-06 06:16:28 -0800 (Tue, 06 Dec 2016) | 2 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - merged ’ciliary basal body duplication’ into ‘centriole replication’ changes in entailments ------------------------------------------------------------------------ r37522 | termgenie | 2016-12-06 06:12:38 -0800 (Tue, 06 Dec 2016) | 2 lines TermGenie commit for user: rjdodson reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37522) +++ go_inferences.obo (working copy) @@ -88576,6 +88576,10 @@ is_a: GO:0099533 {is_inferred="true"} ! positive regulation of presynaptic cytosolic calcium concentration [Term] +id: GO:1905742 ! Ras guanyl-nucleotide exchange factor complex +is_a: GO:0032045 {is_inferred="true"} ! guanyl-nucleotide exchange factor complex + +[Term] id: GO:1905743 ! mitochondrial calcium uptake involved in negative regulation of presynaptic cytosolic calcium concentration is_a: GO:0036444 {is_inferred="true"} ! mitochondrial calcium uptake is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell ------------------------------------------------------------------------ r37516 | paola | 2016-12-06 03:54:05 -0800 (Tue, 06 Dec 2016) | 2 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - edited def of 'centriole replication' changes in entailments ------------------------------------------------------------------------ r37514 | termgenie | 2016-12-06 02:55:52 -0800 (Tue, 06 Dec 2016) | 2 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37514) +++ go_inferences.obo (working copy) @@ -88576,6 +88576,11 @@ is_a: GO:0099533 {is_inferred="true"} ! positive regulation of presynaptic cytosolic calcium concentration [Term] +id: GO:1905743 ! mitochondrial calcium uptake involved in negative regulation of presynaptic cytosolic calcium concentration +is_a: GO:0036444 {is_inferred="true"} ! mitochondrial calcium uptake +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37512 | termgenie | 2016-12-06 02:09:54 -0800 (Tue, 06 Dec 2016) | 2 lines TermGenie commit for user: dosumis reviewed by dosumis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37512) +++ go_inferences.obo (working copy) @@ -88571,6 +88571,11 @@ is_a: GO:1905735 {is_inferred="true"} ! regulation of L-proline import across plasma membrane [Term] +id: GO:1905741 ! mitochondrial calcium release involved in positive regulation of presynaptic cytosolic calcium concentration +is_a: GO:0099093 {is_inferred="true"} ! mitochondrial calcium release +is_a: GO:0099533 {is_inferred="true"} ! positive regulation of presynaptic cytosolic calcium concentration + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37507 | termgenie | 2016-12-05 11:54:04 -0800 (Mon, 05 Dec 2016) | 4 lines TermGenie commit for user: ValWood reviewed by ukemi changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37507) +++ go_inferences.obo (working copy) @@ -75054,6 +75054,7 @@ [Term] id: GO:1902897 ! regulation of postsynaptic density protein 95 clustering +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:1901626 {is_inferred="true"} ! regulation of postsynaptic membrane organization is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane @@ -88550,6 +88551,26 @@ is_a: GO:0035372 {is_inferred="true"} ! protein localization to microtubule [Term] +id: GO:1905735 ! regulation of L-proline import across plasma membrane +is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport + +[Term] +id: GO:1905736 ! negative regulation of L-proline import across plasma membrane +is_a: GO:1902835 {is_inferred="true"} ! negative regulation of proline import into cell +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1905735 {is_inferred="true"} ! regulation of L-proline import across plasma membrane + +[Term] +id: GO:1905737 ! positive regulation of L-proline import across plasma membrane +is_a: GO:1902836 {is_inferred="true"} ! positive regulation of proline import into cell +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport +is_a: GO:1905735 {is_inferred="true"} ! regulation of L-proline import across plasma membrane + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37471 | dph | 2016-12-02 05:26:21 -0800 (Fri, 02 Dec 2016) | 2 lines Changed the name of DNA ring activity to be more consistent with the literature. changes in entailments ------------------------------------------------------------------------ r37467 | paola | 2016-12-02 02:54:38 -0800 (Fri, 02 Dec 2016) | 3 lines GH NTR: 3′to 5′ RNA polymerase activity #12812 - more work - see ticket for details changes in entailments ------------------------------------------------------------------------ r37465 | paola | 2016-12-02 02:19:03 -0800 (Fri, 02 Dec 2016) | 2 lines Removed RO stanzas changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37465) +++ go_inferences.obo (working copy) @@ -1076,23 +1076,23 @@ [Term] id: GO:0001054 ! RNA polymerase I activity -is_a: GO:0003899 {is_inferred="true"} ! DNA-directed RNA polymerase activity +is_a: GO:0003899 {is_inferred="true"} ! DNA-directed 5'-3' RNA polymerase activity [Term] id: GO:0001055 ! RNA polymerase II activity -is_a: GO:0003899 {is_inferred="true"} ! DNA-directed RNA polymerase activity +is_a: GO:0003899 {is_inferred="true"} ! DNA-directed 5'-3' RNA polymerase activity [Term] id: GO:0001056 ! RNA polymerase III activity -is_a: GO:0003899 {is_inferred="true"} ! DNA-directed RNA polymerase activity +is_a: GO:0003899 {is_inferred="true"} ! DNA-directed 5'-3' RNA polymerase activity [Term] id: GO:0001057 ! RNA polymerase IV activity -is_a: GO:0003899 {is_inferred="true"} ! DNA-directed RNA polymerase activity +is_a: GO:0003899 {is_inferred="true"} ! DNA-directed 5'-3' RNA polymerase activity [Term] id: GO:0001058 ! RNA polymerase V activity -is_a: GO:0003899 {is_inferred="true"} ! DNA-directed RNA polymerase activity +is_a: GO:0003899 {is_inferred="true"} ! DNA-directed 5'-3' RNA polymerase activity [Term] id: GO:0001083 ! transcription factor activity, RNA polymerase II basal transcription factor binding @@ -61736,20 +61736,20 @@ is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity [Term] -id: GO:1900259 ! regulation of RNA-directed RNA polymerase activity +id: GO:1900259 ! regulation of RNA-directed 5'-3' RNA polymerase activity is_a: GO:0051338 {is_inferred="true"} ! regulation of transferase activity is_a: GO:1903506 {is_inferred="true"} ! regulation of nucleic acid-templated transcription [Term] -id: GO:1900260 ! negative regulation of RNA-directed RNA polymerase activity +id: GO:1900260 ! negative regulation of RNA-directed 5'-3' RNA polymerase activity is_a: GO:0051348 {is_inferred="true"} ! negative regulation of transferase activity -is_a: GO:1900259 {is_inferred="true"} ! regulation of RNA-directed RNA polymerase activity +is_a: GO:1900259 {is_inferred="true"} ! regulation of RNA-directed 5'-3' RNA polymerase activity is_a: GO:1903507 {is_inferred="true"} ! negative regulation of nucleic acid-templated transcription [Term] -id: GO:1900261 ! positive regulation of RNA-directed RNA polymerase activity +id: GO:1900261 ! positive regulation of RNA-directed 5'-3' RNA polymerase activity is_a: GO:0051347 {is_inferred="true"} ! positive regulation of transferase activity -is_a: GO:1900259 {is_inferred="true"} ! regulation of RNA-directed RNA polymerase activity +is_a: GO:1900259 {is_inferred="true"} ! regulation of RNA-directed 5'-3' RNA polymerase activity is_a: GO:1903508 {is_inferred="true"} ! positive regulation of nucleic acid-templated transcription [Term] ------------------------------------------------------------------------ r37462 | paola | 2016-12-02 01:59:16 -0800 (Fri, 02 Dec 2016) | 2 lines GH NTRs: response to viscosity + copper ion transport across BBB/BCB #12594 - closed - added logical defs to BBB and BCB terms changes in entailments ------------------------------------------------------------------------ r37457 | dph | 2016-12-01 17:39:41 -0800 (Thu, 01 Dec 2016) | 2 lines Added proteaphagy. GH12839-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37457) +++ go_inferences.obo (working copy) @@ -49030,6 +49030,10 @@ is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] +id: GO:0061816 ! proteaphagy +is_a: GO:0035973 {is_inferred="true"} ! aggrephagy + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r37448 | davidos | 2016-12-01 07:29:43 -0800 (Thu, 01 Dec 2016) | 1 line Fixed typo in namespace changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37448) +++ go_inferences.obo (working copy) @@ -59156,7 +59156,7 @@ [Term] id: GO:0098942 ! retrograde trans-synaptic signaling by trans-synaptic protein complex -is_a: GO:0098923 {is_inferred="true"} ! retrograde trans-synaptic signaling by soluble gas +is_a: GO:0098917 {is_inferred="true"} ! retrograde trans-synaptic signaling is_a: GO:0099545 {is_inferred="true"} ! trans-synaptic signaling by trans-synaptic complex [Term] @@ -59774,6 +59774,10 @@ is_a: GO:0099509 {is_inferred="true"} ! regulation of presynaptic cytosolic calcium ion concentration [Term] +id: GO:0099114 ! chromatin silencing at subtelomere +is_a: GO:0006342 {is_inferred="true"} ! chromatin silencing + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -60065,8 +60069,8 @@ is_a: GO:0099622 {is_inferred="true"} ! cardiac muscle cell membrane repolarization [Term] -id: GO:0099626 ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium ion concentration -is_a: GO:0099511 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of cytosolic calcium ion concentration +id: GO:0099626 ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels +is_a: GO:0099511 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of cytosolic calcium levels [Term] id: GO:0099628 ! neurotransmitter receptor diffusion trapping @@ -60096,7 +60100,7 @@ [Term] id: GO:0099635 ! voltage-gated calcium channel activity involved in positive regulation of presynaptic cytosolic calcium levels -is_a: GO:0099626 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium ion concentration +is_a: GO:0099626 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels [Term] id: GO:0099638 ! endosome to plasma membrane protein transport @@ -85339,8 +85343,8 @@ is_a: GO:0005388 {is_inferred="true"} ! calcium-transporting ATPase activity [Term] -id: GO:1905057 ! voltage-gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium ion concentration -is_a: GO:0099511 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of cytosolic calcium ion concentration +id: GO:1905057 ! voltage-gated calcium channel activity involved in regulation of postsynaptic cytosolic calcium levels +is_a: GO:0099511 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of cytosolic calcium levels [Term] id: GO:1905058 ! calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration @@ -88699,6 +88703,10 @@ is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus [Term] +id: GO:1990141 ! chromatin silencing at centromere outer repeat region +is_a: GO:0030702 {is_inferred="true"} ! chromatin silencing at centromere + +[Term] id: GO:1990148 ! glutamate dehydrogenase complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex ------------------------------------------------------------------------ r37407 | tberardi | 2016-11-30 09:50:37 -0800 (Wed, 30 Nov 2016) | 1 line GH12825 merge GO:0090450 and GO:1990003 - closed changes in entailments ------------------------------------------------------------------------ r37404 | termgenie | 2016-11-30 09:13:31 -0800 (Wed, 30 Nov 2016) | 2 lines TermGenie commit for user: pg reviewed by tb changes in entailments ------------------------------------------------------------------------ r37396 | davidos | 2016-11-30 07:17:13 -0800 (Wed, 30 Nov 2016) | 1 line Removed logical def on in attempt to fix TG build. This def was => inconsistency due to link to CL when plant gametes should also be included. See https://github.com/geneontology/go-ontology/issues/12834 changes in entailments ------------------------------------------------------------------------ r37305 | dph | 2016-11-29 06:12:21 -0800 (Tue, 29 Nov 2016) | 2 lines GH12829-closed. Modified the definition of ubiquitin protein ligase activity to allow for extension of linear ubiquitin chains. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37305) +++ go_inferences.obo (working copy) @@ -516,18 +516,6 @@ is_a: GO:0030203 {is_inferred="true"} ! glycosaminoglycan metabolic process [Term] -id: GO:0000271 ! polysaccharide biosynthetic process -is_a: GO:0005976 {is_inferred="true"} ! polysaccharide metabolic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process -is_a: GO:0016051 {is_inferred="true"} ! carbohydrate biosynthetic process - -[Term] -id: GO:0000272 ! polysaccharide catabolic process -is_a: GO:0005976 {is_inferred="true"} ! polysaccharide metabolic process -is_a: GO:0009057 {is_inferred="true"} ! macromolecule catabolic process -is_a: GO:0016052 {is_inferred="true"} ! carbohydrate catabolic process - -[Term] id: GO:0000274 ! mitochondrial proton-transporting ATP synthase, stator stalk is_a: GO:0045265 {is_inferred="true"} ! proton-transporting ATP synthase, stator stalk is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex @@ -543,10 +531,6 @@ is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex [Term] -id: GO:0000280 ! nuclear division -is_a: GO:0048285 {is_inferred="true"} ! organelle fission - -[Term] id: GO:0000281 ! mitotic cytokinesis is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process @@ -950,10 +934,6 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] -id: GO:0000820 ! regulation of glutamine family amino acid metabolic process -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process - -[Term] id: GO:0000821 ! regulation of arginine metabolic process is_a: GO:0000820 {is_inferred="true"} ! regulation of glutamine family amino acid metabolic process @@ -1294,10 +1274,6 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] -id: GO:0001558 ! regulation of cell growth -is_a: GO:0040008 {is_inferred="true"} ! regulation of growth - -[Term] id: GO:0001559 ! regulation of cell growth by detection of nuclear:cytoplasmic ratio is_a: GO:0016475 {is_inferred="true"} ! detection of nuclear:cytoplasmic ratio @@ -1383,11 +1359,6 @@ is_a: GO:0055082 {is_inferred="true"} ! cellular chemical homeostasis [Term] -id: GO:0001692 ! histamine metabolic process -is_a: GO:0052803 {is_inferred="true"} ! imidazole-containing compound metabolic process -is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process - -[Term] id: GO:0001694 ! histamine biosynthetic process is_a: GO:0001692 {is_inferred="true"} ! histamine metabolic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process @@ -1400,18 +1371,10 @@ is_a: GO:0052805 {is_inferred="true"} ! imidazole-containing compound catabolic process [Term] -id: GO:0001696 ! gastric acid secretion -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] id: GO:0001739 ! sex chromatin is_a: GO:0005720 {is_inferred="true"} ! nuclear heterochromatin [Term] -id: GO:0001750 ! photoreceptor outer segment -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:0001756 ! somitogenesis is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -1550,10 +1513,6 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] -id: GO:0001820 ! serotonin secretion -is_a: GO:0006837 {is_inferred="true"} ! serotonin transport - -[Term] id: GO:0001821 ! histamine secretion is_a: GO:0046903 {is_inferred="true"} ! secretion is_a: GO:0051608 {is_inferred="true"} ! histamine transport @@ -1839,10 +1798,6 @@ is_a: GO:0014075 {is_inferred="true"} ! response to amine [Term] -id: GO:0001976 ! neurological system process involved in regulation of systemic arterial blood pressure -is_a: GO:0050877 {is_inferred="true"} ! neurological system process - -[Term] id: GO:0001985 ! negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure is_a: GO:0010459 {is_inferred="true"} ! negative regulation of heart rate @@ -1856,10 +1811,6 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] -id: GO:0002018 ! renin-angiotensin regulation of aldosterone production -is_a: GO:2000858 {is_inferred="true"} ! regulation of aldosterone secretion - -[Term] id: GO:0002028 ! regulation of sodium ion transport is_a: GO:0010959 {is_inferred="true"} ! regulation of metal ion transport @@ -1899,11 +1850,6 @@ is_a: GO:2000648 {is_inferred="true"} ! positive regulation of stem cell proliferation [Term] -id: GO:0002053 ! positive regulation of mesenchymal cell proliferation -is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation -is_a: GO:0010464 {is_inferred="true"} ! regulation of mesenchymal cell proliferation - -[Term] id: GO:0002054 ! nucleobase binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -1977,10 +1923,6 @@ is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation [Term] -id: GO:0002087 ! regulation of respiratory gaseous exchange by neurological system process -is_a: GO:0050877 {is_inferred="true"} ! neurological system process - -[Term] id: GO:0002090 ! regulation of receptor internalization is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process is_a: GO:0048259 {is_inferred="true"} ! regulation of receptor-mediated endocytosis @@ -2136,10 +2078,6 @@ is_a: GO:0030595 {is_inferred="true"} ! leukocyte chemotaxis [Term] -id: GO:0002246 ! wound healing involved in inflammatory response -is_a: GO:0042060 {is_inferred="true"} ! wound healing - -[Term] id: GO:0002256 ! regulation of kinin cascade is_a: GO:0002673 {is_inferred="true"} ! regulation of acute inflammatory response is_a: GO:2000257 {is_inferred="true"} ! regulation of protein activation cascade @@ -2157,10 +2095,6 @@ is_a: GO:2000259 {is_inferred="true"} ! positive regulation of protein activation cascade [Term] -id: GO:0002263 ! cell activation involved in immune response -is_a: GO:0001775 {is_inferred="true"} ! cell activation - -[Term] id: GO:0002264 ! endothelial cell activation involved in immune response is_a: GO:0002263 {is_inferred="true"} ! cell activation involved in immune response is_a: GO:0042118 {is_inferred="true"} ! endothelial cell activation @@ -2176,10 +2110,6 @@ is_a: GO:0002266 {is_inferred="true"} ! follicular dendritic cell activation [Term] -id: GO:0002269 ! leukocyte activation involved in inflammatory response -is_a: GO:0045321 {is_inferred="true"} ! leukocyte activation - -[Term] id: GO:0002271 ! plasmacytoid dendritic cell activation involved in immune response is_a: GO:0002270 {is_inferred="true"} ! plasmacytoid dendritic cell activation is_a: GO:0002366 {is_inferred="true"} ! leukocyte activation involved in immune response @@ -2232,16 +2162,6 @@ is_a: GO:0043011 {is_inferred="true"} ! myeloid dendritic cell differentiation [Term] -id: GO:0002285 ! lymphocyte activation involved in immune response -is_a: GO:0002366 {is_inferred="true"} ! leukocyte activation involved in immune response -is_a: GO:0046649 {is_inferred="true"} ! lymphocyte activation - -[Term] -id: GO:0002286 ! T cell activation involved in immune response -is_a: GO:0002285 {is_inferred="true"} ! lymphocyte activation involved in immune response -is_a: GO:0042110 {is_inferred="true"} ! T cell activation - -[Term] id: GO:0002287 ! alpha-beta T cell activation involved in immune response is_a: GO:0002286 {is_inferred="true"} ! T cell activation involved in immune response is_a: GO:0046631 {is_inferred="true"} ! alpha-beta T cell activation @@ -2262,11 +2182,6 @@ is_a: GO:0046629 {is_inferred="true"} ! gamma-delta T cell activation [Term] -id: GO:0002292 ! T cell differentiation involved in immune response -is_a: GO:0002286 {is_inferred="true"} ! T cell activation involved in immune response -is_a: GO:0030217 {is_inferred="true"} ! T cell differentiation - -[Term] id: GO:0002293 ! alpha-beta T cell differentiation involved in immune response is_a: GO:0002287 {is_inferred="true"} ! alpha-beta T cell activation involved in immune response is_a: GO:0002292 {is_inferred="true"} ! T cell differentiation involved in immune response @@ -2315,21 +2230,6 @@ is_a: GO:0046630 {is_inferred="true"} ! gamma-delta T cell proliferation [Term] -id: GO:0002312 ! B cell activation involved in immune response -is_a: GO:0002285 {is_inferred="true"} ! lymphocyte activation involved in immune response -is_a: GO:0042113 {is_inferred="true"} ! B cell activation - -[Term] -id: GO:0002313 ! mature B cell differentiation involved in immune response -is_a: GO:0002312 {is_inferred="true"} ! B cell activation involved in immune response -is_a: GO:0002335 {is_inferred="true"} ! mature B cell differentiation - -[Term] -id: GO:0002322 ! B cell proliferation involved in immune response -is_a: GO:0002312 {is_inferred="true"} ! B cell activation involved in immune response -is_a: GO:0042100 {is_inferred="true"} ! B cell proliferation - -[Term] id: GO:0002323 ! natural killer cell activation involved in immune response is_a: GO:0002285 {is_inferred="true"} ! lymphocyte activation involved in immune response is_a: GO:0030101 {is_inferred="true"} ! natural killer cell activation @@ -2353,11 +2253,6 @@ is_a: GO:0002363 {is_inferred="true"} ! alpha-beta T cell lineage commitment [Term] -id: GO:0002366 ! leukocyte activation involved in immune response -is_a: GO:0002263 {is_inferred="true"} ! cell activation involved in immune response -is_a: GO:0045321 {is_inferred="true"} ! leukocyte activation - -[Term] id: GO:0002367 ! cytokine production involved in immune response is_a: GO:0001816 {is_inferred="true"} ! cytokine production @@ -2437,10 +2332,6 @@ is_a: GO:0001821 {is_inferred="true"} ! histamine secretion [Term] -id: GO:0002442 ! serotonin secretion involved in inflammatory response -is_a: GO:0001820 {is_inferred="true"} ! serotonin secretion - -[Term] id: GO:0002467 ! germinal center formation is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis @@ -2543,10 +2434,30 @@ is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] +id: GO:0002554 ! serotonin secretion by platelet +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] +id: GO:0002555 ! histamine secretion by platelet +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] +id: GO:0002556 ! serotonin secretion by basophil +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] +id: GO:0002557 ! histamine secretion by basophil +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:0002575 ! basophil chemotaxis is_a: GO:0071621 {is_inferred="true"} ! granulocyte chemotaxis [Term] +id: GO:0002576 ! platelet degranulation +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process @@ -2848,37 +2759,6 @@ is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] -id: GO:0002637 ! regulation of immunoglobulin production -is_a: GO:0002700 {is_inferred="true"} ! regulation of production of molecular mediator of immune response - -[Term] -id: GO:0002638 ! negative regulation of immunoglobulin production -is_a: GO:0002637 {is_inferred="true"} ! regulation of immunoglobulin production -is_a: GO:0002701 {is_inferred="true"} ! negative regulation of production of molecular mediator of immune response - -[Term] -id: GO:0002639 ! positive regulation of immunoglobulin production -is_a: GO:0002637 {is_inferred="true"} ! regulation of immunoglobulin production -is_a: GO:0002702 {is_inferred="true"} ! positive regulation of production of molecular mediator of immune response - -[Term] -id: GO:0002640 ! regulation of immunoglobulin biosynthetic process -is_a: GO:0002637 {is_inferred="true"} ! regulation of immunoglobulin production -is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process - -[Term] -id: GO:0002641 ! negative regulation of immunoglobulin biosynthetic process -is_a: GO:0002638 {is_inferred="true"} ! negative regulation of immunoglobulin production -is_a: GO:0002640 {is_inferred="true"} ! regulation of immunoglobulin biosynthetic process -is_a: GO:0010558 {is_inferred="true"} ! negative regulation of macromolecule biosynthetic process - -[Term] -id: GO:0002642 ! positive regulation of immunoglobulin biosynthetic process -is_a: GO:0002639 {is_inferred="true"} ! positive regulation of immunoglobulin production -is_a: GO:0002640 {is_inferred="true"} ! regulation of immunoglobulin biosynthetic process -is_a: GO:0010557 {is_inferred="true"} ! positive regulation of macromolecule biosynthetic process - -[Term] id: GO:0002643 ! regulation of tolerance induction is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -3065,20 +2945,6 @@ is_a: GO:0045730 {is_inferred="true"} ! respiratory burst [Term] -id: GO:0002682 ! regulation of immune system process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0002683 ! negative regulation of immune system process -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] -id: GO:0002684 ! positive regulation of immune system process -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] id: GO:0002685 ! regulation of leukocyte migration is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration @@ -3127,45 +2993,6 @@ is_a: GO:0002691 {is_inferred="true"} ! regulation of cellular extravasation [Term] -id: GO:0002694 ! regulation of leukocyte activation -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process -is_a: GO:0050865 {is_inferred="true"} ! regulation of cell activation - -[Term] -id: GO:0002695 ! negative regulation of leukocyte activation -is_a: GO:0002683 {is_inferred="true"} ! negative regulation of immune system process -is_a: GO:0002694 {is_inferred="true"} ! regulation of leukocyte activation -is_a: GO:0050866 {is_inferred="true"} ! negative regulation of cell activation - -[Term] -id: GO:0002696 ! positive regulation of leukocyte activation -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process -is_a: GO:0002694 {is_inferred="true"} ! regulation of leukocyte activation -is_a: GO:0050867 {is_inferred="true"} ! positive regulation of cell activation - -[Term] -id: GO:0002697 ! regulation of immune effector process -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process - -[Term] -id: GO:0002698 ! negative regulation of immune effector process -is_a: GO:0002683 {is_inferred="true"} ! negative regulation of immune system process -is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process - -[Term] -id: GO:0002699 ! positive regulation of immune effector process -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process -is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process - -[Term] -id: GO:0002701 ! negative regulation of production of molecular mediator of immune response -is_a: GO:0002700 {is_inferred="true"} ! regulation of production of molecular mediator of immune response - -[Term] -id: GO:0002702 ! positive regulation of production of molecular mediator of immune response -is_a: GO:0002700 {is_inferred="true"} ! regulation of production of molecular mediator of immune response - -[Term] id: GO:0002703 ! regulation of leukocyte mediated immunity is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process @@ -3469,26 +3296,6 @@ is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response [Term] -id: GO:0002790 ! peptide secretion -is_a: GO:0015833 {is_inferred="true"} ! peptide transport -is_a: GO:0046903 {is_inferred="true"} ! secretion - -[Term] -id: GO:0002791 ! regulation of peptide secretion -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:0090087 {is_inferred="true"} ! regulation of peptide transport - -[Term] -id: GO:0002792 ! negative regulation of peptide secretion -is_a: GO:0002791 {is_inferred="true"} ! regulation of peptide secretion -is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion - -[Term] -id: GO:0002793 ! positive regulation of peptide secretion -is_a: GO:0002791 {is_inferred="true"} ! regulation of peptide secretion -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion - -[Term] id: GO:0002794 ! regulation of antimicrobial peptide secretion is_a: GO:0002784 {is_inferred="true"} ! regulation of antimicrobial peptide production is_a: GO:0002791 {is_inferred="true"} ! regulation of peptide secretion @@ -4214,28 +4021,6 @@ is_a: GO:0019229 {is_inferred="true"} ! regulation of vasoconstriction [Term] -id: GO:0003071 ! renal system process involved in regulation of systemic arterial blood pressure -is_a: GO:0003014 {is_inferred="true"} ! renal system process - -[Term] -id: GO:0003093 ! regulation of glomerular filtration -is_a: GO:0098801 {is_inferred="true"} ! regulation of renal system process - -[Term] -id: GO:0003097 ! renal water transport -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] -id: GO:0003104 ! positive regulation of glomerular filtration -is_a: GO:0003093 {is_inferred="true"} ! regulation of glomerular filtration -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] -id: GO:0003105 ! negative regulation of glomerular filtration -is_a: GO:0003093 {is_inferred="true"} ! regulation of glomerular filtration -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] id: GO:0003130 ! BMP signaling pathway involved in heart induction is_a: GO:1905114 {is_inferred="true"} ! cell surface receptor signaling pathway involved in cell-cell signaling @@ -4540,23 +4325,6 @@ is_a: GO:0072148 {is_inferred="true"} ! epithelial cell fate commitment [Term] -id: GO:0003330 ! regulation of extracellular matrix constituent secretion -is_a: GO:1903053 {is_inferred="true"} ! regulation of extracellular matrix organization -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] -id: GO:0003331 ! positive regulation of extracellular matrix constituent secretion -is_a: GO:0003330 {is_inferred="true"} ! regulation of extracellular matrix constituent secretion -is_a: GO:1903055 {is_inferred="true"} ! positive regulation of extracellular matrix organization -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] -id: GO:0003332 ! negative regulation of extracellular matrix constituent secretion -is_a: GO:0003330 {is_inferred="true"} ! regulation of extracellular matrix constituent secretion -is_a: GO:1903054 {is_inferred="true"} ! negative regulation of extracellular matrix organization -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] id: GO:0003333 ! amino acid transmembrane transport is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport @@ -4746,10 +4514,6 @@ is_a: GO:0045198 {is_inferred="true"} ! establishment of epithelial cell apical/basal polarity [Term] -id: GO:0003413 ! chondrocyte differentiation involved in endochondral bone morphogenesis -is_a: GO:0002062 {is_inferred="true"} ! chondrocyte differentiation - -[Term] id: GO:0003414 ! chondrocyte morphogenesis involved in endochondral bone morphogenesis is_a: GO:0090171 {is_inferred="true"} ! chondrocyte morphogenesis @@ -4789,10 +4553,6 @@ is_a: GO:0003422 {is_inferred="true"} ! growth plate cartilage morphogenesis [Term] -id: GO:0003433 ! chondrocyte development involved in endochondral bone morphogenesis -is_a: GO:0002063 {is_inferred="true"} ! chondrocyte development - -[Term] id: GO:0003434 ! BMP signaling pathway involved in growth plate cartilage chondrocyte development is_a: GO:0030509 {is_inferred="true"} ! BMP signaling pathway @@ -5200,11 +4960,6 @@ is_a: GO:0098651 {is_inferred="true"} ! basement membrane collagen trimer [Term] -id: GO:0005587 ! collagen type IV trimer -is_a: GO:0098642 {is_inferred="true"} ! network-forming collagen trimer -is_a: GO:0098651 {is_inferred="true"} ! basement membrane collagen trimer - -[Term] id: GO:0005589 ! collagen type VI trimer is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component @@ -5450,10 +5205,6 @@ is_a: GO:0034518 {is_inferred="true"} ! RNA cap binding complex [Term] -id: GO:0005858 ! axonemal dynein complex -is_a: GO:0044447 {is_inferred="true"} ! axoneme part - -[Term] id: GO:0005859 ! muscle myosin complex is_a: GO:0016460 {is_inferred="true"} ! myosin II complex is_a: GO:0044449 {is_inferred="true"} ! contractile fiber part @@ -5467,25 +5218,6 @@ is_a: GO:0005874 {is_inferred="true"} ! microtubule [Term] -id: GO:0005879 ! axonemal microtubule -is_a: GO:0005874 {is_inferred="true"} ! microtubule -is_a: GO:0044447 {is_inferred="true"} ! axoneme part - -[Term] -id: GO:0005880 ! nuclear microtubule -is_a: GO:0005874 {is_inferred="true"} ! microtubule -is_a: GO:0044428 {is_inferred="true"} ! nuclear part - -[Term] -id: GO:0005881 ! cytoplasmic microtubule -is_a: GO:0005874 {is_inferred="true"} ! microtubule -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part - -[Term] -id: GO:0005886 ! plasma membrane -is_a: GO:0044464 {is_inferred="true"} ! cell part - -[Term] id: GO:0005887 ! integral component of plasma membrane is_a: GO:0031226 {is_inferred="true"} ! intrinsic component of plasma membrane @@ -5547,10 +5279,6 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0005930 ! axoneme -is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part - -[Term] id: GO:0005938 ! cell cortex is_a: GO:0099568 {is_inferred="true"} ! cytoplasmic region @@ -5632,40 +5360,6 @@ is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] -id: GO:0005975 ! carbohydrate metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] -id: GO:0005976 ! polysaccharide metabolic process -is_a: GO:0005975 {is_inferred="true"} ! carbohydrate metabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process - -[Term] -id: GO:0005977 ! glycogen metabolic process -is_a: GO:0044723 {is_inferred="true"} ! single-organism carbohydrate metabolic process - -[Term] -id: GO:0005978 ! glycogen biosynthetic process -is_a: GO:0005977 {is_inferred="true"} ! glycogen metabolic process -is_a: GO:0009250 {is_inferred="true"} ! glucan biosynthetic process - -[Term] -id: GO:0005979 ! regulation of glycogen biosynthetic process -is_a: GO:0010962 {is_inferred="true"} ! regulation of glucan biosynthetic process -is_a: GO:0070873 {is_inferred="true"} ! regulation of glycogen metabolic process - -[Term] -id: GO:0005980 ! glycogen catabolic process -is_a: GO:0005977 {is_inferred="true"} ! glycogen metabolic process -is_a: GO:0009251 {is_inferred="true"} ! glucan catabolic process -is_a: GO:0044724 {is_inferred="true"} ! single-organism carbohydrate catabolic process - -[Term] -id: GO:0005981 ! regulation of glycogen catabolic process -is_a: GO:0043471 {is_inferred="true"} ! regulation of cellular carbohydrate catabolic process -is_a: GO:0070873 {is_inferred="true"} ! regulation of glycogen metabolic process - -[Term] id: GO:0005983 ! starch catabolic process is_a: GO:0005982 {is_inferred="true"} ! starch metabolic process is_a: GO:0009251 {is_inferred="true"} ! glucan catabolic process @@ -5771,10 +5465,6 @@ is_a: GO:0042354 {is_inferred="true"} ! L-fucose metabolic process [Term] -id: GO:0006006 ! glucose metabolic process -is_a: GO:0019318 {is_inferred="true"} ! hexose metabolic process - -[Term] id: GO:0006007 ! glucose catabolic process is_a: GO:0006006 {is_inferred="true"} ! glucose metabolic process is_a: GO:0019320 {is_inferred="true"} ! hexose catabolic process @@ -5828,24 +5518,6 @@ is_a: GO:0046173 {is_inferred="true"} ! polyol biosynthetic process [Term] -id: GO:0006022 ! aminoglycan metabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process -is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] -id: GO:0006023 ! aminoglycan biosynthetic process -is_a: GO:0006022 {is_inferred="true"} ! aminoglycan metabolic process -is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process -is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process - -[Term] -id: GO:0006024 ! glycosaminoglycan biosynthetic process -is_a: GO:0006023 {is_inferred="true"} ! aminoglycan biosynthetic process -is_a: GO:0030203 {is_inferred="true"} ! glycosaminoglycan metabolic process - -[Term] id: GO:0006025 ! galactosaminoglycan biosynthetic process is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0046350 {is_inferred="true"} ! galactosaminoglycan metabolic process @@ -6060,16 +5732,6 @@ is_a: GO:0005976 {is_inferred="true"} ! polysaccharide metabolic process [Term] -id: GO:0006081 ! cellular aldehyde metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] -id: GO:0006082 ! organic acid metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:0006083 ! acetate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process @@ -6157,10 +5819,6 @@ is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] -id: GO:0006109 ! regulation of carbohydrate metabolic process -is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process - -[Term] id: GO:0006110 ! regulation of glycolytic process is_a: GO:0042325 {is_inferred="true"} ! regulation of phosphorylation is_a: GO:0043467 {is_inferred="true"} ! regulation of generation of precursor metabolites and energy @@ -6881,15 +6539,6 @@ is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] -id: GO:0006520 ! cellular amino acid metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] -id: GO:0006521 ! regulation of cellular amino acid metabolic process -is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process - -[Term] id: GO:0006523 ! alanine biosynthetic process is_a: GO:0006522 {is_inferred="true"} ! alanine metabolic process @@ -6945,10 +6594,6 @@ is_a: GO:0019344 {is_inferred="true"} ! cysteine biosynthetic process [Term] -id: GO:0006536 ! glutamate metabolic process -is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process - -[Term] id: GO:0006537 ! glutamate biosynthetic process is_a: GO:0006536 {is_inferred="true"} ! glutamate metabolic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process @@ -7117,10 +6762,6 @@ is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] -id: GO:0006575 ! cellular modified amino acid metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:0006577 ! amino-acid betaine metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process @@ -7158,11 +6799,6 @@ is_a: GO:0042438 {is_inferred="true"} ! melanin biosynthetic process [Term] -id: GO:0006584 ! catecholamine metabolic process -is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:0006585 ! dopamine biosynthetic process from tyrosine is_a: GO:0006570 {is_inferred="true"} ! tyrosine metabolic process is_a: GO:0042416 {is_inferred="true"} ! dopamine biosynthetic process @@ -7286,10 +6922,6 @@ is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion [Term] -id: GO:0006629 ! lipid metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:0006631 ! fatty acid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process @@ -7560,12 +7192,6 @@ is_a: GO:0006692 {is_inferred="true"} ! prostanoid metabolic process [Term] -id: GO:0006694 ! steroid biosynthetic process -is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process - -[Term] id: GO:0006695 ! cholesterol biosynthetic process is_a: GO:0008203 {is_inferred="true"} ! cholesterol metabolic process is_a: GO:0016126 {is_inferred="true"} ! sterol biosynthetic process @@ -7586,18 +7212,6 @@ is_a: GO:1902653 {is_inferred="true"} ! secondary alcohol biosynthetic process [Term] -id: GO:0006699 ! bile acid biosynthetic process -is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process -is_a: GO:0008206 {is_inferred="true"} ! bile acid metabolic process -is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process -is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process - -[Term] -id: GO:0006700 ! C21-steroid hormone biosynthetic process -is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process -is_a: GO:0008207 {is_inferred="true"} ! C21-steroid hormone metabolic process - -[Term] id: GO:0006701 ! progesterone biosynthetic process is_a: GO:0006700 {is_inferred="true"} ! C21-steroid hormone biosynthetic process is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process @@ -7612,16 +7226,6 @@ is_a: GO:0008210 {is_inferred="true"} ! estrogen metabolic process [Term] -id: GO:0006704 ! glucocorticoid biosynthetic process -is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process -is_a: GO:0008211 {is_inferred="true"} ! glucocorticoid metabolic process - -[Term] -id: GO:0006705 ! mineralocorticoid biosynthetic process -is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process -is_a: GO:0008212 {is_inferred="true"} ! mineralocorticoid metabolic process - -[Term] id: GO:0006706 ! steroid catabolic process is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process is_a: GO:0016042 {is_inferred="true"} ! lipid catabolic process @@ -7932,10 +7536,6 @@ is_a: GO:0072593 {is_inferred="true"} ! reactive oxygen species metabolic process [Term] -id: GO:0006807 ! nitrogen compound metabolic process -is_a: GO:0008152 {is_inferred="true"} ! metabolic process - -[Term] id: GO:0006808 ! regulation of nitrogen utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process @@ -7945,14 +7545,6 @@ is_a: GO:1903409 {is_inferred="true"} ! reactive oxygen species biosynthetic process [Term] -id: GO:0006811 ! ion transport -is_a: GO:0006810 {is_inferred="true"} ! transport - -[Term] -id: GO:0006812 ! cation transport -is_a: GO:0006811 {is_inferred="true"} ! ion transport - -[Term] id: GO:0006813 ! potassium ion transport is_a: GO:0015672 {is_inferred="true"} ! monovalent inorganic cation transport is_a: GO:0030001 {is_inferred="true"} ! metal ion transport @@ -7967,10 +7559,6 @@ is_a: GO:0015698 {is_inferred="true"} ! inorganic anion transport [Term] -id: GO:0006820 ! anion transport -is_a: GO:0006811 {is_inferred="true"} ! ion transport - -[Term] id: GO:0006821 ! chloride transport is_a: GO:0015698 {is_inferred="true"} ! inorganic anion transport @@ -8000,12 +7588,6 @@ is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] -id: GO:0006837 ! serotonin transport -is_a: GO:0015696 {is_inferred="true"} ! ammonium transport -is_a: GO:0015844 {is_inferred="true"} ! monoamine transport -is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport - -[Term] id: GO:0006839 ! mitochondrial transport is_a: GO:0006810 {is_inferred="true"} ! transport @@ -8086,10 +7668,6 @@ is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] -id: GO:0006869 ! lipid transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] id: GO:0006873 ! cellular ion homeostasis is_a: GO:0050801 {is_inferred="true"} ! ion homeostasis is_a: GO:0055082 {is_inferred="true"} ! cellular chemical homeostasis @@ -8146,10 +7724,6 @@ is_a: GO:0048278 {is_inferred="true"} ! vesicle docking [Term] -id: GO:0006906 ! vesicle fusion -is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion - -[Term] id: GO:0006910 ! phagocytosis, recognition is_a: GO:0008037 {is_inferred="true"} ! cell recognition @@ -8162,18 +7736,6 @@ is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly [Term] -id: GO:0006937 ! regulation of muscle contraction -is_a: GO:0090257 {is_inferred="true"} ! regulation of muscle system process - -[Term] -id: GO:0006940 ! regulation of smooth muscle contraction -is_a: GO:0006937 {is_inferred="true"} ! regulation of muscle contraction - -[Term] -id: GO:0006942 ! regulation of striated muscle contraction -is_a: GO:0006937 {is_inferred="true"} ! regulation of muscle contraction - -[Term] id: GO:0006963 ! positive regulation of antibacterial peptide biosynthetic process is_a: GO:0002803 {is_inferred="true"} ! positive regulation of antibacterial peptide production is_a: GO:0002807 {is_inferred="true"} ! positive regulation of antimicrobial peptide biosynthetic process @@ -8209,10 +7771,6 @@ is_a: GO:1901522 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus [Term] -id: GO:0006996 ! organelle organization -is_a: GO:0016043 {is_inferred="true"} ! cellular component organization - -[Term] id: GO:0006997 ! nucleus organization is_a: GO:0006996 {is_inferred="true"} ! organelle organization @@ -8433,10 +7991,6 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] -id: GO:0007126 ! meiotic nuclear division -is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process - -[Term] id: GO:0007130 ! synaptonemal complex assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly @@ -8465,10 +8019,6 @@ is_a: GO:0098765 {is_inferred="true"} ! meiosis II cell cycle phase [Term] -id: GO:0007162 ! negative regulation of cell adhesion -is_a: GO:0030155 {is_inferred="true"} ! regulation of cell adhesion - -[Term] id: GO:0007175 ! negative regulation of epidermal growth factor-activated receptor activity is_a: GO:0007176 {is_inferred="true"} ! regulation of epidermal growth factor-activated receptor activity is_a: GO:0061099 {is_inferred="true"} ! negative regulation of protein tyrosine kinase activity @@ -8519,11 +8069,6 @@ is_a: GO:0099643 {is_inferred="true"} ! signal release from synapse [Term] -id: GO:0007275 ! multicellular organism development -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process -is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development - -[Term] id: GO:0007277 ! pole cell development is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism @@ -8536,10 +8081,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0007281 ! germ cell development -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism - -[Term] id: GO:0007282 ! cystoblast division is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism @@ -8647,10 +8188,6 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] -id: GO:0007320 ! insemination -is_a: GO:0044703 {is_inferred="true"} ! multi-organism reproductive process - -[Term] id: GO:0007329 ! positive regulation of transcription from RNA polymerase II promoter by pheromones is_a: GO:1901522 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus @@ -8711,6 +8248,10 @@ is_a: GO:0060429 {is_inferred="true"} ! epithelium development [Term] +id: GO:0007488 ! histoblast morphogenesis +is_a: GO:0000902 {is_inferred="true"} ! cell morphogenesis + +[Term] id: GO:0007503 ! fat body development is_a: GO:0060612 {is_inferred="true"} ! adipose tissue development @@ -8781,18 +8322,6 @@ is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] -id: GO:0007611 ! learning or memory -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] -id: GO:0007617 ! mating behavior -is_a: GO:0019098 {is_inferred="true"} ! reproductive behavior - -[Term] -id: GO:0008016 ! regulation of heart contraction -is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation - -[Term] id: GO:0008021 ! synaptic vesicle is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -8879,11 +8408,6 @@ is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] -id: GO:0008202 ! steroid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process - -[Term] id: GO:0008203 ! cholesterol metabolic process is_a: GO:0016125 {is_inferred="true"} ! sterol metabolic process is_a: GO:1902652 {is_inferred="true"} ! secondary alcohol metabolic process @@ -8901,31 +8425,11 @@ is_a: GO:1902652 {is_inferred="true"} ! secondary alcohol metabolic process [Term] -id: GO:0008206 ! bile acid metabolic process -is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process -is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process -is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process - -[Term] -id: GO:0008207 ! C21-steroid hormone metabolic process -is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0008208 ! C21-steroid hormone catabolic process is_a: GO:0006706 {is_inferred="true"} ! steroid catabolic process is_a: GO:0008207 {is_inferred="true"} ! C21-steroid hormone metabolic process [Term] -id: GO:0008211 ! glucocorticoid metabolic process -is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process - -[Term] -id: GO:0008212 ! mineralocorticoid metabolic process -is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0008215 ! spermine metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process @@ -8965,14 +8469,6 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0008284 ! positive regulation of cell proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation - -[Term] -id: GO:0008285 ! negative regulation of cell proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation - -[Term] id: GO:0008287 ! protein serine/threonine phosphatase complex is_a: GO:1903293 {is_inferred="true"} ! phosphatase complex @@ -9074,10 +8570,6 @@ is_a: GO:1902554 {is_inferred="true"} ! serine/threonine protein kinase complex [Term] -id: GO:0008406 ! gonad development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0008429 ! phosphatidylethanolamine binding is_a: GO:0005543 {is_inferred="true"} ! phospholipid binding @@ -9185,12 +8677,6 @@ is_a: GO:0022402 {is_inferred="true"} ! cell cycle process [Term] -id: GO:0008610 ! lipid biosynthetic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process -is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:0008611 ! ether lipid biosynthetic process is_a: GO:0046485 {is_inferred="true"} ! ether lipid metabolic process is_a: GO:0046504 {is_inferred="true"} ! glycerol ether biosynthetic process @@ -9278,16 +8764,6 @@ is_a: GO:0019693 {is_inferred="true"} ! ribose phosphate metabolic process [Term] -id: GO:0009057 ! macromolecule catabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process - -[Term] -id: GO:0009059 ! macromolecule biosynthetic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:0009062 ! fatty acid catabolic process is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process @@ -9299,10 +8775,6 @@ is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] -id: GO:0009064 ! glutamine family amino acid metabolic process -is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process - -[Term] id: GO:0009065 ! glutamine family amino acid catabolic process is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process @@ -10170,11 +9642,6 @@ is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process [Term] -id: GO:0009251 ! glucan catabolic process -is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process -is_a: GO:0044042 {is_inferred="true"} ! glucan metabolic process - -[Term] id: GO:0009252 ! peptidoglycan biosynthetic process is_a: GO:0000270 {is_inferred="true"} ! peptidoglycan metabolic process is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process @@ -10281,14 +9748,6 @@ is_a: GO:0098781 {is_inferred="true"} ! ncRNA transcription [Term] -id: GO:0009306 ! protein secretion -is_a: GO:0015031 {is_inferred="true"} ! protein transport - -[Term] -id: GO:0009308 ! amine metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:0009309 ! amine biosynthetic process is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process @@ -10508,12 +9967,6 @@ is_a: GO:0090487 {is_inferred="true"} ! secondary metabolite catabolic process [Term] -id: GO:0009415 ! response to water -is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical -is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound - -[Term] id: GO:0009423 ! chorismate biosynthetic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046417 {is_inferred="true"} ! chorismate metabolic process @@ -10567,11 +10020,6 @@ is_a: GO:0009445 {is_inferred="true"} ! putrescine metabolic process [Term] -id: GO:0009448 ! gamma-aminobutyric acid metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process -is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process - -[Term] id: GO:0009449 ! gamma-aminobutyric acid biosynthetic process is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0009448 {is_inferred="true"} ! gamma-aminobutyric acid metabolic process @@ -10825,10 +10273,6 @@ is_a: GO:0072522 {is_inferred="true"} ! purine-containing compound biosynthetic process [Term] -id: GO:0009712 ! catechol-containing compound metabolic process -is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process - -[Term] id: GO:0009713 ! catechol-containing compound biosynthetic process is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process @@ -10952,10 +10396,6 @@ is_a: GO:1901421 {is_inferred="true"} ! positive regulation of response to alcohol [Term] -id: GO:0009790 ! embryo development -is_a: GO:0007275 {is_inferred="true"} ! multicellular organism development - -[Term] id: GO:0009793 ! embryo development ending in seed dormancy is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process @@ -11128,44 +10568,6 @@ is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction [Term] -id: GO:0009889 ! regulation of biosynthetic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] -id: GO:0009890 ! negative regulation of biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process - -[Term] -id: GO:0009891 ! positive regulation of biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process - -[Term] -id: GO:0009892 ! negative regulation of metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] -id: GO:0009893 ! positive regulation of metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] -id: GO:0009894 ! regulation of catabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] -id: GO:0009895 ! negative regulation of catabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process - -[Term] -id: GO:0009896 ! positive regulation of catabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process - -[Term] id: GO:0009897 ! external side of plasma membrane is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part @@ -11201,10 +10603,6 @@ is_a: GO:0072148 {is_inferred="true"} ! epithelial cell fate commitment [Term] -id: GO:0009913 ! epidermal cell differentiation -is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation - -[Term] id: GO:0009920 ! cell plate formation involved in plant-type cell wall biogenesis is_a: GO:0000919 {is_inferred="true"} ! cell plate assembly @@ -11267,22 +10665,6 @@ is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis [Term] -id: GO:0009966 ! regulation of signal transduction -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] -id: GO:0009967 ! positive regulation of signal transduction -is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus - -[Term] -id: GO:0009968 ! negative regulation of signal transduction -is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction -is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus - -[Term] id: GO:0009969 ! xyloglucan biosynthetic process is_a: GO:0009250 {is_inferred="true"} ! glucan biosynthetic process is_a: GO:0010411 {is_inferred="true"} ! xyloglucan metabolic process @@ -11384,10 +10766,6 @@ is_a: GO:0030261 {is_inferred="true"} ! chromosome condensation [Term] -id: GO:0010033 ! response to organic substance -is_a: GO:0042221 {is_inferred="true"} ! response to chemical - -[Term] id: GO:0010034 ! response to acetate is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010033 {is_inferred="true"} ! response to organic substance @@ -11394,10 +10772,6 @@ is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] -id: GO:0010035 ! response to inorganic substance -is_a: GO:0042221 {is_inferred="true"} ! response to chemical - -[Term] id: GO:0010036 ! response to boron-containing substance is_a: GO:0042221 {is_inferred="true"} ! response to chemical @@ -12200,14 +11574,6 @@ is_a: GO:1901385 {is_inferred="true"} ! regulation of voltage-gated calcium channel activity [Term] -id: GO:0010463 ! mesenchymal cell proliferation -is_a: GO:0008283 {is_inferred="true"} ! cell proliferation - -[Term] -id: GO:0010464 ! regulation of mesenchymal cell proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation - -[Term] id: GO:0010466 ! negative regulation of peptidase activity is_a: GO:0045861 {is_inferred="true"} ! negative regulation of proteolysis is_a: GO:0051346 {is_inferred="true"} ! negative regulation of hydrolase activity @@ -12218,15 +11584,6 @@ is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process [Term] -id: GO:0010469 ! regulation of receptor activity -is_a: GO:0065009 {is_inferred="true"} ! regulation of molecular function - -[Term] -id: GO:0010470 ! regulation of gastrulation -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development - -[Term] id: GO:0010477 ! response to sulfur dioxide is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -12427,23 +11784,6 @@ is_a: GO:0009743 {is_inferred="true"} ! response to carbohydrate [Term] -id: GO:0010556 ! regulation of macromolecule biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process - -[Term] -id: GO:0010557 ! positive regulation of macromolecule biosynthetic process -is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process -is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process -is_a: GO:0010604 {is_inferred="true"} ! positive regulation of macromolecule metabolic process - -[Term] -id: GO:0010558 ! negative regulation of macromolecule biosynthetic process -is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process -is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process -is_a: GO:0010605 {is_inferred="true"} ! negative regulation of macromolecule metabolic process - -[Term] id: GO:0010559 ! regulation of glycoprotein biosynthetic process is_a: GO:1903018 {is_inferred="true"} ! regulation of glycoprotein metabolic process is_a: GO:2000112 {is_inferred="true"} ! regulation of cellular macromolecule biosynthetic process @@ -12472,19 +11812,6 @@ is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process [Term] -id: GO:0010564 ! regulation of cell cycle process -is_a: GO:0051726 {is_inferred="true"} ! regulation of cell cycle - -[Term] -id: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:0010566 ! regulation of ketone biosynthetic process -is_a: GO:0010565 {is_inferred="true"} ! regulation of cellular ketone metabolic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process - -[Term] id: GO:0010567 ! regulation of ketone catabolic process is_a: GO:0010565 {is_inferred="true"} ! regulation of cellular ketone metabolic process is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process @@ -12606,16 +11933,6 @@ is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly [Term] -id: GO:0010604 ! positive regulation of macromolecule metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process - -[Term] -id: GO:0010605 ! negative regulation of macromolecule metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process - -[Term] id: GO:0010606 ! positive regulation of cytoplasmic mRNA processing body assembly is_a: GO:0010603 {is_inferred="true"} ! regulation of cytoplasmic mRNA processing body assembly is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly @@ -12726,16 +12043,6 @@ is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization [Term] -id: GO:0010638 ! positive regulation of organelle organization -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization - -[Term] -id: GO:0010639 ! negative regulation of organelle organization -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization - -[Term] id: GO:0010640 ! regulation of platelet-derived growth factor receptor signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction @@ -12754,20 +12061,6 @@ is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication [Term] -id: GO:0010646 ! regulation of cell communication -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0010647 ! positive regulation of cell communication -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process - -[Term] -id: GO:0010648 ! negative regulation of cell communication -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process - -[Term] id: GO:0010649 ! regulation of cell communication by electrical coupling is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication @@ -12838,23 +12131,6 @@ is_a: GO:0010665 {is_inferred="true"} ! regulation of cardiac muscle cell apoptotic process [Term] -id: GO:0010675 ! regulation of cellular carbohydrate metabolic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:0010676 ! positive regulation of cellular carbohydrate metabolic process -is_a: GO:0010675 {is_inferred="true"} ! regulation of cellular carbohydrate metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0045913 {is_inferred="true"} ! positive regulation of carbohydrate metabolic process - -[Term] -id: GO:0010677 ! negative regulation of cellular carbohydrate metabolic process -is_a: GO:0010675 {is_inferred="true"} ! regulation of cellular carbohydrate metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0045912 {is_inferred="true"} ! negative regulation of carbohydrate metabolic process - -[Term] id: GO:0010678 ! negative regulation of cellular carbohydrate metabolic process by negative regulation of transcription, DNA-templated is_a: GO:0010677 {is_inferred="true"} ! negative regulation of cellular carbohydrate metabolic process is_a: GO:0045892 {is_inferred="true"} ! negative regulation of transcription, DNA-templated @@ -12933,16 +12209,6 @@ is_a: GO:0007267 {is_inferred="true"} ! cell-cell signaling [Term] -id: GO:0010700 ! negative regulation of norepinephrine secretion -is_a: GO:0014061 {is_inferred="true"} ! regulation of norepinephrine secretion -is_a: GO:0033604 {is_inferred="true"} ! negative regulation of catecholamine secretion - -[Term] -id: GO:0010701 ! positive regulation of norepinephrine secretion -is_a: GO:0014061 {is_inferred="true"} ! regulation of norepinephrine secretion -is_a: GO:0033605 {is_inferred="true"} ! positive regulation of catecholamine secretion - -[Term] id: GO:0010704 ! meiotic DNA double-strand break processing involved in meiotic gene conversion is_a: GO:0000706 {is_inferred="true"} ! meiotic DNA double-strand break processing @@ -13024,14 +12290,6 @@ is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] -id: GO:0010720 ! positive regulation of cell development -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development - -[Term] -id: GO:0010721 ! negative regulation of cell development -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development - -[Term] id: GO:0010722 ! regulation of ferrochelatase activity is_a: GO:0051339 {is_inferred="true"} ! regulation of lyase activity @@ -13451,20 +12709,6 @@ is_a: GO:0060051 {is_inferred="true"} ! negative regulation of protein glycosylation [Term] -id: GO:0010837 ! regulation of keratinocyte proliferation -is_a: GO:0050678 {is_inferred="true"} ! regulation of epithelial cell proliferation - -[Term] -id: GO:0010838 ! positive regulation of keratinocyte proliferation -is_a: GO:0010837 {is_inferred="true"} ! regulation of keratinocyte proliferation -is_a: GO:0050679 {is_inferred="true"} ! positive regulation of epithelial cell proliferation - -[Term] -id: GO:0010839 ! negative regulation of keratinocyte proliferation -is_a: GO:0010837 {is_inferred="true"} ! regulation of keratinocyte proliferation -is_a: GO:0050680 {is_inferred="true"} ! negative regulation of epithelial cell proliferation - -[Term] id: GO:0010840 ! regulation of circadian sleep/wake cycle, wakefulness is_a: GO:0042749 {is_inferred="true"} ! regulation of circadian sleep/wake cycle @@ -13631,18 +12875,6 @@ is_a: GO:0010889 {is_inferred="true"} ! regulation of sequestering of triglyceride [Term] -id: GO:0010893 ! positive regulation of steroid biosynthetic process -is_a: GO:0045940 {is_inferred="true"} ! positive regulation of steroid metabolic process -is_a: GO:0046889 {is_inferred="true"} ! positive regulation of lipid biosynthetic process -is_a: GO:0050810 {is_inferred="true"} ! regulation of steroid biosynthetic process - -[Term] -id: GO:0010894 ! negative regulation of steroid biosynthetic process -is_a: GO:0045939 {is_inferred="true"} ! negative regulation of steroid metabolic process -is_a: GO:0050810 {is_inferred="true"} ! regulation of steroid biosynthetic process -is_a: GO:0051055 {is_inferred="true"} ! negative regulation of lipid biosynthetic process - -[Term] id: GO:0010895 ! negative regulation of ergosterol biosynthetic process is_a: GO:0010894 {is_inferred="true"} ! negative regulation of steroid biosynthetic process is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process @@ -13712,10 +12944,6 @@ is_a: GO:0045934 {is_inferred="true"} ! negative regulation of nucleobase-containing compound metabolic process [Term] -id: GO:0010907 ! positive regulation of glucose metabolic process -is_a: GO:0010906 {is_inferred="true"} ! regulation of glucose metabolic process - -[Term] id: GO:0010908 ! regulation of heparan sulfate proteoglycan biosynthetic process is_a: GO:0010559 {is_inferred="true"} ! regulation of glycoprotein biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process @@ -13867,7 +13095,6 @@ [Term] id: GO:0010948 ! negative regulation of cell cycle process is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process -is_a: GO:0045786 {is_inferred="true"} ! negative regulation of cell cycle [Term] id: GO:0010949 ! negative regulation of intestinal phytosterol absorption @@ -13927,12 +13154,6 @@ is_a: GO:0010960 {is_inferred="true"} ! magnesium ion homeostasis [Term] -id: GO:0010962 ! regulation of glucan biosynthetic process -is_a: GO:0010675 {is_inferred="true"} ! regulation of cellular carbohydrate metabolic process -is_a: GO:0032885 {is_inferred="true"} ! regulation of polysaccharide biosynthetic process -is_a: GO:2000112 {is_inferred="true"} ! regulation of cellular macromolecule biosynthetic process - -[Term] id: GO:0010963 ! regulation of L-arginine import is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import @@ -14285,27 +13506,6 @@ is_a: GO:0050433 {is_inferred="true"} ! regulation of catecholamine secretion [Term] -id: GO:0014061 ! regulation of norepinephrine secretion -is_a: GO:0050433 {is_inferred="true"} ! regulation of catecholamine secretion - -[Term] -id: GO:0014062 ! regulation of serotonin secretion -is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] -id: GO:0014063 ! negative regulation of serotonin secretion -is_a: GO:0014062 {is_inferred="true"} ! regulation of serotonin secretion -is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] -id: GO:0014064 ! positive regulation of serotonin secretion -is_a: GO:0014062 {is_inferred="true"} ! regulation of serotonin secretion -is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] id: GO:0014066 ! regulation of phosphatidylinositol 3-kinase signaling is_a: GO:1902531 {is_inferred="true"} ! regulation of intracellular signal transduction @@ -14681,11 +13881,6 @@ is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] -id: GO:0015031 ! protein transport -is_a: GO:0008104 {is_inferred="true"} ! protein localization -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] id: GO:0015050 ! methane monooxygenase complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex @@ -15602,11 +14797,6 @@ is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] -id: GO:0015696 ! ammonium transport -is_a: GO:0006812 {is_inferred="true"} ! cation transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport - -[Term] id: GO:0015697 ! quaternary ammonium group transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport @@ -15669,11 +14859,6 @@ is_a: GO:0015698 {is_inferred="true"} ! inorganic anion transport [Term] -id: GO:0015711 ! organic anion transport -is_a: GO:0006820 {is_inferred="true"} ! anion transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] id: GO:0015712 ! hexose phosphate transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport @@ -15705,10 +14890,6 @@ is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] -id: GO:0015718 ! monocarboxylic acid transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport - -[Term] id: GO:0015719 ! allantoate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0042886 {is_inferred="true"} ! amide transport @@ -15719,11 +14900,6 @@ is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] -id: GO:0015721 ! bile acid and bile salt transport -is_a: GO:0006869 {is_inferred="true"} ! lipid transport -is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport - -[Term] id: GO:0015722 ! canalicular bile acid transport is_a: GO:0032782 {is_inferred="true"} ! bile acid secretion @@ -16184,11 +15360,6 @@ is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] -id: GO:0015833 ! peptide transport -is_a: GO:0042886 {is_inferred="true"} ! amide transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] id: GO:0015835 ! peptidoglycan transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport @@ -16198,11 +15369,6 @@ is_a: GO:0015835 {is_inferred="true"} ! peptidoglycan transport [Term] -id: GO:0015837 ! amine transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport - -[Term] id: GO:0015838 ! amino-acid betaine transport is_a: GO:0015697 {is_inferred="true"} ! quaternary ammonium group transport @@ -16233,11 +15399,6 @@ is_a: GO:0019755 {is_inferred="true"} ! one-carbon compound transport [Term] -id: GO:0015844 ! monoamine transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport - -[Term] id: GO:0015846 ! polyamine transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport @@ -16253,14 +15414,6 @@ is_a: GO:0015696 {is_inferred="true"} ! ammonium transport [Term] -id: GO:0015849 ! organic acid transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] -id: GO:0015850 ! organic hydroxy compound transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport - -[Term] id: GO:0015851 ! nucleobase transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport @@ -16357,10 +15510,6 @@ is_a: GO:0051937 {is_inferred="true"} ! catecholamine transport [Term] -id: GO:0015874 ! norepinephrine transport -is_a: GO:0051937 {is_inferred="true"} ! catecholamine transport - -[Term] id: GO:0015876 ! acetyl-CoA transport is_a: GO:0015916 {is_inferred="true"} ! fatty-acyl-CoA transport @@ -16716,10 +15865,6 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] -id: GO:0015980 ! energy derivation by oxidation of organic compounds -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0015985 ! energy coupled proton transport, down electrochemical gradient is_a: GO:1902600 {is_inferred="true"} ! hydrogen ion transmembrane transport @@ -16798,10 +15943,6 @@ is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] -id: GO:0016043 ! cellular component organization -is_a: GO:0009987 {is_inferred="true"} ! cellular process - -[Term] id: GO:0016045 ! detection of bacterium is_a: GO:0009617 {is_inferred="true"} ! response to bacterium is_a: GO:0098543 {is_inferred="true"} ! detection of other organism @@ -16812,24 +15953,6 @@ is_a: GO:0098543 {is_inferred="true"} ! detection of other organism [Term] -id: GO:0016050 ! vesicle organization -is_a: GO:0006996 {is_inferred="true"} ! organelle organization - -[Term] -id: GO:0016051 ! carbohydrate biosynthetic process -is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] -id: GO:0016052 ! carbohydrate catabolic process -is_a: GO:0005975 {is_inferred="true"} ! carbohydrate metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process - -[Term] -id: GO:0016053 ! organic acid biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:0016054 ! organic acid catabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process @@ -17245,10 +16368,6 @@ is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] -id: GO:0016337 ! single organismal cell-cell adhesion -is_a: GO:0098609 {is_inferred="true"} ! cell-cell adhesion - -[Term] id: GO:0016342 ! catenin complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -17332,11 +16451,6 @@ is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] -id: GO:0016525 ! negative regulation of angiogenesis -is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis -is_a: GO:2000181 {is_inferred="true"} ! negative regulation of blood vessel morphogenesis - -[Term] id: GO:0016533 ! cyclin-dependent protein kinase 5 holoenzyme complex is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex @@ -17484,11 +16598,6 @@ is_a: GO:2000113 {is_inferred="true"} ! negative regulation of cellular macromolecule biosynthetic process [Term] -id: GO:0017157 ! regulation of exocytosis -is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] id: GO:0017158 ! regulation of calcium ion-dependent exocytosis is_a: GO:1903305 {is_inferred="true"} ! regulation of regulated secretory pathway @@ -17501,10 +16610,6 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] -id: GO:0018130 ! heterocycle biosynthetic process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process - -[Term] id: GO:0018146 ! keratan sulfate biosynthetic process is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0042339 {is_inferred="true"} ! keratan sulfate metabolic process @@ -17952,12 +17057,6 @@ is_a: GO:0042216 {is_inferred="true"} ! phenanthrene catabolic process [Term] -id: GO:0018958 ! phenol-containing compound metabolic process -is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process - -[Term] id: GO:0018960 ! 4-nitrophenol metabolic process is_a: GO:0006807 {is_inferred="true"} ! nitrogen compound metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process @@ -18149,18 +17248,10 @@ is_a: GO:0019208 {is_inferred="true"} ! phosphatase regulator activity [Term] -id: GO:0019216 ! regulation of lipid metabolic process -is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process - -[Term] id: GO:0019217 ! regulation of fatty acid metabolic process is_a: GO:0019216 {is_inferred="true"} ! regulation of lipid metabolic process [Term] -id: GO:0019218 ! regulation of steroid metabolic process -is_a: GO:0019216 {is_inferred="true"} ! regulation of lipid metabolic process - -[Term] id: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process @@ -18171,10 +17262,6 @@ is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process [Term] -id: GO:0019222 ! regulation of metabolic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] id: GO:0019229 ! regulation of vasoconstriction is_a: GO:0097746 {is_inferred="true"} ! regulation of blood vessel diameter is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation @@ -18464,10 +17551,6 @@ is_a: GO:0019320 {is_inferred="true"} ! hexose catabolic process [Term] -id: GO:0019318 ! hexose metabolic process -is_a: GO:0005996 {is_inferred="true"} ! monosaccharide metabolic process - -[Term] id: GO:0019319 ! hexose biosynthetic process is_a: GO:0019318 {is_inferred="true"} ! hexose metabolic process is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process @@ -18911,10 +17994,6 @@ is_a: GO:0019434 {is_inferred="true"} ! sophorosyloxydocosanoate metabolic process [Term] -id: GO:0019438 ! aromatic compound biosynthetic process -is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process - -[Term] id: GO:0019439 ! aromatic compound catabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process @@ -19797,10 +18876,6 @@ is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] -id: GO:0019695 ! choline metabolic process -is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process - -[Term] id: GO:0019697 ! L-xylitol catabolic process to xylulose 5-phosphate is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process is_a: GO:0051160 {is_inferred="true"} ! L-xylitol catabolic process @@ -19872,10 +18947,6 @@ is_a: GO:0051644 {is_inferred="true"} ! plastid localization [Term] -id: GO:0019752 ! carboxylic acid metabolic process -is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process - -[Term] id: GO:0019755 ! one-carbon compound transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport @@ -20294,11 +19365,6 @@ is_a: GO:0051961 {is_inferred="true"} ! negative regulation of nervous system development [Term] -id: GO:0021915 ! neural tube development -is_a: GO:0035295 {is_inferred="true"} ! tube development -is_a: GO:0060429 {is_inferred="true"} ! epithelium development - -[Term] id: GO:0021918 ! regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment is_a: GO:0060850 {is_inferred="true"} ! regulation of transcription involved in cell fate commitment @@ -20390,40 +19456,6 @@ is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus [Term] -id: GO:0022402 ! cell cycle process -is_a: GO:0009987 {is_inferred="true"} ! cellular process - -[Term] -id: GO:0022407 ! regulation of cell-cell adhesion -is_a: GO:0030155 {is_inferred="true"} ! regulation of cell adhesion - -[Term] -id: GO:0022408 ! negative regulation of cell-cell adhesion -is_a: GO:0007162 {is_inferred="true"} ! negative regulation of cell adhesion -is_a: GO:0022407 {is_inferred="true"} ! regulation of cell-cell adhesion - -[Term] -id: GO:0022409 ! positive regulation of cell-cell adhesion -is_a: GO:0022407 {is_inferred="true"} ! regulation of cell-cell adhesion -is_a: GO:0045785 {is_inferred="true"} ! positive regulation of cell adhesion - -[Term] -id: GO:0022412 ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] -id: GO:0022600 ! digestive system process -is_a: GO:0003008 {is_inferred="true"} ! system process - -[Term] -id: GO:0022602 ! ovulation cycle process -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] -id: GO:0022603 ! regulation of anatomical structure morphogenesis -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] id: GO:0022604 ! regulation of cell morphogenesis is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization @@ -20530,20 +19562,6 @@ is_a: GO:0032403 {is_inferred="true"} ! protein complex binding [Term] -id: GO:0023051 ! regulation of signaling -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0023056 ! positive regulation of signaling -is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] -id: GO:0023057 ! negative regulation of signaling -is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] id: GO:0030001 ! metal ion transport is_a: GO:0006812 {is_inferred="true"} ! cation transport @@ -20629,14 +19647,6 @@ is_a: GO:1902099 {is_inferred="true"} ! regulation of metaphase/anaphase transition of cell cycle [Term] -id: GO:0030072 ! peptide hormone secretion -is_a: GO:0002790 {is_inferred="true"} ! peptide secretion - -[Term] -id: GO:0030073 ! insulin secretion -is_a: GO:0009306 {is_inferred="true"} ! protein secretion - -[Term] id: GO:0030085 ! PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex is_a: GO:0098807 {is_inferred="true"} ! chloroplast thylakoid membrane protein complex @@ -20671,10 +19681,6 @@ is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport [Term] -id: GO:0030104 ! water homeostasis -is_a: GO:0048878 {is_inferred="true"} ! chemical homeostasis - -[Term] id: GO:0030111 ! regulation of Wnt signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction @@ -20733,10 +19739,6 @@ is_a: GO:0046224 {is_inferred="true"} ! bacteriocin metabolic process [Term] -id: GO:0030155 ! regulation of cell adhesion -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] id: GO:0030162 ! regulation of proteolysis is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process @@ -20789,37 +19791,6 @@ is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] -id: GO:0030186 ! melatonin metabolic process -is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process -is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process - -[Term] -id: GO:0030187 ! melatonin biosynthetic process -is_a: GO:0030186 {is_inferred="true"} ! melatonin metabolic process -is_a: GO:0042435 {is_inferred="true"} ! indole-containing compound biosynthetic process -is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process - -[Term] -id: GO:0030193 ! regulation of blood coagulation -is_a: GO:0050818 {is_inferred="true"} ! regulation of coagulation -is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing -is_a: GO:1900046 {is_inferred="true"} ! regulation of hemostasis - -[Term] -id: GO:0030194 ! positive regulation of blood coagulation -is_a: GO:0030193 {is_inferred="true"} ! regulation of blood coagulation -is_a: GO:0050820 {is_inferred="true"} ! positive regulation of coagulation -is_a: GO:0090303 {is_inferred="true"} ! positive regulation of wound healing -is_a: GO:1900048 {is_inferred="true"} ! positive regulation of hemostasis - -[Term] -id: GO:0030195 ! negative regulation of blood coagulation -is_a: GO:0030193 {is_inferred="true"} ! regulation of blood coagulation -is_a: GO:0050819 {is_inferred="true"} ! negative regulation of coagulation -is_a: GO:0061045 {is_inferred="true"} ! negative regulation of wound healing -is_a: GO:1900047 {is_inferred="true"} ! negative regulation of hemostasis - -[Term] id: GO:0030199 ! collagen fibril organization is_a: GO:0071822 {is_inferred="true"} ! protein complex subunit organization @@ -20843,10 +19814,6 @@ is_a: GO:1903510 {is_inferred="true"} ! mucopolysaccharide metabolic process [Term] -id: GO:0030203 ! glycosaminoglycan metabolic process -is_a: GO:0006022 {is_inferred="true"} ! aminoglycan metabolic process - -[Term] id: GO:0030204 ! chondroitin sulfate metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process @@ -20961,24 +19928,11 @@ is_a: GO:0071763 {is_inferred="true"} ! nuclear membrane organization [Term] -id: GO:0030278 ! regulation of ossification -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:0030279 ! negative regulation of ossification -is_a: GO:0030278 {is_inferred="true"} ! regulation of ossification -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] id: GO:0030285 ! integral component of synaptic vesicle membrane is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0098563 {is_inferred="true"} ! intrinsic component of synaptic vesicle membrane [Term] -id: GO:0030286 ! dynein complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex - -[Term] id: GO:0030295 ! protein kinase activator activity is_a: GO:0019209 {is_inferred="true"} ! kinase activator activity is_a: GO:0019887 {is_inferred="true"} ! protein kinase regulator activity @@ -21007,18 +19961,6 @@ is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] -id: GO:0030307 ! positive regulation of cell growth -is_a: GO:0001558 {is_inferred="true"} ! regulation of cell growth -is_a: GO:0045927 {is_inferred="true"} ! positive regulation of growth -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process - -[Term] -id: GO:0030308 ! negative regulation of cell growth -is_a: GO:0001558 {is_inferred="true"} ! regulation of cell growth -is_a: GO:0045926 {is_inferred="true"} ! negative regulation of growth -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process - -[Term] id: GO:0030309 ! poly-N-acetyllactosamine metabolic process is_a: GO:0006022 {is_inferred="true"} ! aminoglycan metabolic process @@ -21049,20 +19991,6 @@ is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] -id: GO:0030334 ! regulation of cell migration -is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility - -[Term] -id: GO:0030335 ! positive regulation of cell migration -is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration -is_a: GO:2000147 {is_inferred="true"} ! positive regulation of cell motility - -[Term] -id: GO:0030336 ! negative regulation of cell migration -is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration -is_a: GO:2000146 {is_inferred="true"} ! negative regulation of cell motility - -[Term] id: GO:0030381 ! chorion-containing eggshell pattern formation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -21207,21 +20135,6 @@ is_a: GO:0030493 {is_inferred="true"} ! bacteriochlorophyll metabolic process [Term] -id: GO:0030500 ! regulation of bone mineralization -is_a: GO:0030278 {is_inferred="true"} ! regulation of ossification -is_a: GO:0070167 {is_inferred="true"} ! regulation of biomineral tissue development - -[Term] -id: GO:0030501 ! positive regulation of bone mineralization -is_a: GO:0030500 {is_inferred="true"} ! regulation of bone mineralization -is_a: GO:0070169 {is_inferred="true"} ! positive regulation of biomineral tissue development - -[Term] -id: GO:0030502 ! negative regulation of bone mineralization -is_a: GO:0030500 {is_inferred="true"} ! regulation of bone mineralization -is_a: GO:0070168 {is_inferred="true"} ! negative regulation of biomineral tissue development - -[Term] id: GO:0030505 ! inorganic diphosphate transport is_a: GO:0015698 {is_inferred="true"} ! inorganic anion transport @@ -21843,20 +20756,6 @@ is_a: GO:0030852 {is_inferred="true"} ! regulation of granulocyte differentiation [Term] -id: GO:0030856 ! regulation of epithelial cell differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation - -[Term] -id: GO:0030857 ! negative regulation of epithelial cell differentiation -is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation - -[Term] -id: GO:0030858 ! positive regulation of epithelial cell differentiation -is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation - -[Term] id: GO:0030860 ! regulation of polarized epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium @@ -21917,23 +20816,6 @@ is_a: GO:0030885 {is_inferred="true"} ! regulation of myeloid dendritic cell activation [Term] -id: GO:0030888 ! regulation of B cell proliferation -is_a: GO:0050670 {is_inferred="true"} ! regulation of lymphocyte proliferation -is_a: GO:0050864 {is_inferred="true"} ! regulation of B cell activation - -[Term] -id: GO:0030889 ! negative regulation of B cell proliferation -is_a: GO:0030888 {is_inferred="true"} ! regulation of B cell proliferation -is_a: GO:0050672 {is_inferred="true"} ! negative regulation of lymphocyte proliferation -is_a: GO:0050869 {is_inferred="true"} ! negative regulation of B cell activation - -[Term] -id: GO:0030890 ! positive regulation of B cell proliferation -is_a: GO:0030888 {is_inferred="true"} ! regulation of B cell proliferation -is_a: GO:0050671 {is_inferred="true"} ! positive regulation of lymphocyte proliferation -is_a: GO:0050871 {is_inferred="true"} ! positive regulation of B cell activation - -[Term] id: GO:0030897 ! HOPS complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:0099023 {is_inferred="true"} ! tethering complex @@ -22097,10 +20979,6 @@ is_a: GO:0044435 {is_inferred="true"} ! plastid part [Term] -id: GO:0031012 ! extracellular matrix -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0031017 ! exocrine pancreas development is_a: GO:0048732 {is_inferred="true"} ! gland development @@ -22610,57 +21488,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0031323 ! regulation of cellular metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0031324 ! negative regulation of cellular metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process - -[Term] -id: GO:0031325 ! positive regulation of cellular metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process - -[Term] -id: GO:0031326 ! regulation of cellular biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:0031327 ! negative regulation of cellular biosynthetic process -is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process - -[Term] -id: GO:0031328 ! positive regulation of cellular biosynthetic process -is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process - -[Term] -id: GO:0031329 ! regulation of cellular catabolic process -is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:0031330 ! negative regulation of cellular catabolic process -is_a: GO:0009895 {is_inferred="true"} ! negative regulation of catabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process - -[Term] -id: GO:0031331 ! positive regulation of cellular catabolic process -is_a: GO:0009896 {is_inferred="true"} ! positive regulation of catabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process - -[Term] id: GO:0031333 ! negative regulation of protein complex assembly is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization @@ -22689,21 +21516,6 @@ is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process [Term] -id: GO:0031338 ! regulation of vesicle fusion -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization -is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport - -[Term] -id: GO:0031339 ! negative regulation of vesicle fusion -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization -is_a: GO:0031338 {is_inferred="true"} ! regulation of vesicle fusion - -[Term] -id: GO:0031340 ! positive regulation of vesicle fusion -is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization -is_a: GO:0031338 {is_inferred="true"} ! regulation of vesicle fusion - -[Term] id: GO:0031341 ! regulation of cell killing is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process @@ -22732,20 +21544,6 @@ is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization [Term] -id: GO:0031347 ! regulation of defense response -is_a: GO:0080134 {is_inferred="true"} ! regulation of response to stress - -[Term] -id: GO:0031348 ! negative regulation of defense response -is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response -is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus - -[Term] -id: GO:0031349 ! positive regulation of defense response -is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus - -[Term] id: GO:0031350 ! intrinsic component of plastid membrane is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -22881,10 +21679,6 @@ is_a: GO:0031407 {is_inferred="true"} ! oxylipin metabolic process [Term] -id: GO:0031410 ! cytoplasmic vesicle -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part - -[Term] id: GO:0031418 ! L-ascorbic acid binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding @@ -23332,20 +22126,6 @@ is_a: GO:0051962 {is_inferred="true"} ! positive regulation of nervous system development [Term] -id: GO:0031644 ! regulation of neurological system process -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:0031645 ! negative regulation of neurological system process -is_a: GO:0031644 {is_inferred="true"} ! regulation of neurological system process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0031646 ! positive regulation of neurological system process -is_a: GO:0031644 {is_inferred="true"} ! regulation of neurological system process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:0031650 ! regulation of heat generation is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process @@ -23563,34 +22343,6 @@ is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex [Term] -id: GO:0031943 ! regulation of glucocorticoid metabolic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process - -[Term] -id: GO:0031944 ! negative regulation of glucocorticoid metabolic process -is_a: GO:0031943 {is_inferred="true"} ! regulation of glucocorticoid metabolic process -is_a: GO:0045939 {is_inferred="true"} ! negative regulation of steroid metabolic process - -[Term] -id: GO:0031945 ! positive regulation of glucocorticoid metabolic process -is_a: GO:0031943 {is_inferred="true"} ! regulation of glucocorticoid metabolic process -is_a: GO:0045940 {is_inferred="true"} ! positive regulation of steroid metabolic process - -[Term] -id: GO:0031946 ! regulation of glucocorticoid biosynthetic process -is_a: GO:0031943 {is_inferred="true"} ! regulation of glucocorticoid metabolic process - -[Term] -id: GO:0031947 ! negative regulation of glucocorticoid biosynthetic process -is_a: GO:0031944 {is_inferred="true"} ! negative regulation of glucocorticoid metabolic process -is_a: GO:0031946 {is_inferred="true"} ! regulation of glucocorticoid biosynthetic process - -[Term] -id: GO:0031948 ! positive regulation of glucocorticoid biosynthetic process -is_a: GO:0031945 {is_inferred="true"} ! positive regulation of glucocorticoid metabolic process -is_a: GO:0031946 {is_inferred="true"} ! regulation of glucocorticoid biosynthetic process - -[Term] id: GO:0031949 ! regulation of glucocorticoid catabolic process is_a: GO:0031943 {is_inferred="true"} ! regulation of glucocorticoid metabolic process is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process @@ -23640,10 +22392,6 @@ is_a: GO:0098791 {is_inferred="true"} ! Golgi subcompartment [Term] -id: GO:0031987 ! locomotion involved in locomotory behavior -is_a: GO:0040011 {is_inferred="true"} ! locomotion - -[Term] id: GO:0031991 ! regulation of actomyosin contractile ring contraction is_a: GO:0032954 {is_inferred="true"} ! regulation of cytokinetic process @@ -23719,12 +22467,6 @@ is_a: GO:0046579 {is_inferred="true"} ! positive regulation of Ras protein signal transduction [Term] -id: GO:0032024 ! positive regulation of insulin secretion -is_a: GO:0050714 {is_inferred="true"} ! positive regulation of protein secretion -is_a: GO:0050796 {is_inferred="true"} ! regulation of insulin secretion -is_a: GO:0090277 {is_inferred="true"} ! positive regulation of peptide hormone secretion - -[Term] id: GO:0032025 ! response to cobalt ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion @@ -23893,20 +22635,6 @@ is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels [Term] -id: GO:0032101 ! regulation of response to external stimulus -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] -id: GO:0032102 ! negative regulation of response to external stimulus -is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus - -[Term] -id: GO:0032103 ! positive regulation of response to external stimulus -is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus - -[Term] id: GO:0032104 ! regulation of response to extracellular stimulus is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus @@ -24453,23 +23181,6 @@ is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] -id: GO:0032330 ! regulation of chondrocyte differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0061035 {is_inferred="true"} ! regulation of cartilage development - -[Term] -id: GO:0032331 ! negative regulation of chondrocyte differentiation -is_a: GO:0032330 {is_inferred="true"} ! regulation of chondrocyte differentiation -is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0061037 {is_inferred="true"} ! negative regulation of cartilage development - -[Term] -id: GO:0032332 ! positive regulation of chondrocyte differentiation -is_a: GO:0032330 {is_inferred="true"} ! regulation of chondrocyte differentiation -is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0061036 {is_inferred="true"} ! positive regulation of cartilage development - -[Term] id: GO:0032335 ! regulation of activin secretion is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion @@ -24501,23 +23212,6 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] -id: GO:0032341 ! aldosterone metabolic process -is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process -is_a: GO:0008207 {is_inferred="true"} ! C21-steroid hormone metabolic process -is_a: GO:0008212 {is_inferred="true"} ! mineralocorticoid metabolic process -is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process -is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process - -[Term] -id: GO:0032342 ! aldosterone biosynthetic process -is_a: GO:0006700 {is_inferred="true"} ! C21-steroid hormone biosynthetic process -is_a: GO:0006705 {is_inferred="true"} ! mineralocorticoid biosynthetic process -is_a: GO:0032341 {is_inferred="true"} ! aldosterone metabolic process -is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process -is_a: GO:0046184 {is_inferred="true"} ! aldehyde biosynthetic process -is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process - -[Term] id: GO:0032343 ! aldosterone catabolic process is_a: GO:0006712 {is_inferred="true"} ! mineralocorticoid catabolic process is_a: GO:0008208 {is_inferred="true"} ! C21-steroid hormone catabolic process @@ -24527,61 +23221,6 @@ is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] -id: GO:0032344 ! regulation of aldosterone metabolic process -is_a: GO:0010565 {is_inferred="true"} ! regulation of cellular ketone metabolic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process -is_a: GO:0032350 {is_inferred="true"} ! regulation of hormone metabolic process - -[Term] -id: GO:0032345 ! negative regulation of aldosterone metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0032344 {is_inferred="true"} ! regulation of aldosterone metabolic process -is_a: GO:0032351 {is_inferred="true"} ! negative regulation of hormone metabolic process -is_a: GO:0045939 {is_inferred="true"} ! negative regulation of steroid metabolic process - -[Term] -id: GO:0032346 ! positive regulation of aldosterone metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0032344 {is_inferred="true"} ! regulation of aldosterone metabolic process -is_a: GO:0032352 {is_inferred="true"} ! positive regulation of hormone metabolic process -is_a: GO:0045940 {is_inferred="true"} ! positive regulation of steroid metabolic process - -[Term] -id: GO:0032347 ! regulation of aldosterone biosynthetic process -is_a: GO:0010566 {is_inferred="true"} ! regulation of ketone biosynthetic process -is_a: GO:0032344 {is_inferred="true"} ! regulation of aldosterone metabolic process - -[Term] -id: GO:0032348 ! negative regulation of aldosterone biosynthetic process -is_a: GO:0032345 {is_inferred="true"} ! negative regulation of aldosterone metabolic process -is_a: GO:0032347 {is_inferred="true"} ! regulation of aldosterone biosynthetic process - -[Term] -id: GO:0032349 ! positive regulation of aldosterone biosynthetic process -is_a: GO:0032346 {is_inferred="true"} ! positive regulation of aldosterone metabolic process -is_a: GO:0032347 {is_inferred="true"} ! regulation of aldosterone biosynthetic process - -[Term] -id: GO:0032350 ! regulation of hormone metabolic process -is_a: GO:0010817 {is_inferred="true"} ! regulation of hormone levels -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] -id: GO:0032351 ! negative regulation of hormone metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0032350 {is_inferred="true"} ! regulation of hormone metabolic process - -[Term] -id: GO:0032352 ! positive regulation of hormone metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0032350 {is_inferred="true"} ! regulation of hormone metabolic process - -[Term] -id: GO:0032353 ! negative regulation of hormone biosynthetic process -is_a: GO:0032351 {is_inferred="true"} ! negative regulation of hormone metabolic process -is_a: GO:0046885 {is_inferred="true"} ! regulation of hormone biosynthetic process - -[Term] id: GO:0032355 ! response to estradiol is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0033993 {is_inferred="true"} ! response to lipid @@ -24619,20 +23258,6 @@ is_a: GO:0032366 {is_inferred="true"} ! intracellular sterol transport [Term] -id: GO:0032368 ! regulation of lipid transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0032369 ! negative regulation of lipid transport -is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport - -[Term] -id: GO:0032370 ! positive regulation of lipid transport -is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport - -[Term] id: GO:0032371 ! regulation of sterol transport is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport @@ -25840,10 +24465,6 @@ is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated [Term] -id: GO:0032787 ! monocarboxylic acid metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process - -[Term] id: GO:0032788 ! saturated monocarboxylic acid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process @@ -26028,29 +24649,6 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] -id: GO:0032838 ! cell projection cytoplasm -is_a: GO:0099568 {is_inferred="true"} ! cytoplasmic region - -[Term] -id: GO:0032839 ! dendrite cytoplasm -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] -id: GO:0032844 ! regulation of homeostatic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality - -[Term] -id: GO:0032845 ! negative regulation of homeostatic process -is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] -id: GO:0032846 ! positive regulation of homeostatic process -is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] id: GO:0032847 ! regulation of cellular pH reduction is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:0051453 {is_inferred="true"} ! regulation of intracellular pH @@ -26120,19 +24718,6 @@ is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] -id: GO:0032879 ! regulation of localization -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0032880 ! regulation of protein localization -is_a: GO:0032879 {is_inferred="true"} ! regulation of localization - -[Term] -id: GO:0032881 ! regulation of polysaccharide metabolic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process - -[Term] id: GO:0032882 ! regulation of chitin metabolic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process @@ -26149,12 +24734,6 @@ is_a: GO:2000112 {is_inferred="true"} ! regulation of cellular macromolecule biosynthetic process [Term] -id: GO:0032885 ! regulation of polysaccharide biosynthetic process -is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process -is_a: GO:0032881 {is_inferred="true"} ! regulation of polysaccharide metabolic process -is_a: GO:0043255 {is_inferred="true"} ! regulation of carbohydrate biosynthetic process - -[Term] id: GO:0032886 ! regulation of microtubule-based process is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process @@ -26174,20 +24753,6 @@ is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization [Term] -id: GO:0032890 ! regulation of organic acid transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0032891 ! negative regulation of organic acid transport -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport - -[Term] -id: GO:0032892 ! positive regulation of organic acid transport -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport - -[Term] id: GO:0032893 ! regulation of gluconate transport is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport @@ -26332,20 +24897,6 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] -id: GO:0032944 ! regulation of mononuclear cell proliferation -is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation - -[Term] -id: GO:0032945 ! negative regulation of mononuclear cell proliferation -is_a: GO:0032944 {is_inferred="true"} ! regulation of mononuclear cell proliferation -is_a: GO:0070664 {is_inferred="true"} ! negative regulation of leukocyte proliferation - -[Term] -id: GO:0032946 ! positive regulation of mononuclear cell proliferation -is_a: GO:0032944 {is_inferred="true"} ! regulation of mononuclear cell proliferation -is_a: GO:0070665 {is_inferred="true"} ! positive regulation of leukocyte proliferation - -[Term] id: GO:0032948 ! regulation of alpha-glucan metabolic process is_a: GO:0010675 {is_inferred="true"} ! regulation of cellular carbohydrate metabolic process is_a: GO:0032881 {is_inferred="true"} ! regulation of polysaccharide metabolic process @@ -26669,10 +25220,6 @@ is_a: GO:0043065 {is_inferred="true"} ! positive regulation of apoptotic process [Term] -id: GO:0033043 ! regulation of organelle organization -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization - -[Term] id: GO:0033044 ! regulation of chromosome organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization @@ -27177,23 +25724,6 @@ is_a: GO:1903322 {is_inferred="true"} ! positive regulation of protein modification by small protein conjugation or removal [Term] -id: GO:0033238 ! regulation of cellular amine metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process - -[Term] -id: GO:0033239 ! negative regulation of cellular amine metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0033238 {is_inferred="true"} ! regulation of cellular amine metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process - -[Term] -id: GO:0033240 ! positive regulation of cellular amine metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0033238 {is_inferred="true"} ! regulation of cellular amine metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process - -[Term] id: GO:0033242 ! negative regulation of cellular amine catabolic process is_a: GO:0033241 {is_inferred="true"} ! regulation of cellular amine catabolic process @@ -27269,11 +25799,6 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] -id: GO:0033267 ! axon part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:0033271 ! myo-inositol phosphate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport @@ -27557,11 +26082,11 @@ [Term] id: GO:0033370 ! maintenance of protein location in mast cell secretory granule -is_a: GO:0051651 {is_inferred="true"} ! maintenance of location in cell +is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell [Term] id: GO:0033377 ! maintenance of protein location in T cell secretory granule -is_a: GO:0051651 {is_inferred="true"} ! maintenance of location in cell +is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell [Term] id: GO:0033383 ! geranyl diphosphate metabolic process @@ -28037,16 +26562,6 @@ is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport [Term] -id: GO:0033604 ! negative regulation of catecholamine secretion -is_a: GO:0050433 {is_inferred="true"} ! regulation of catecholamine secretion -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] -id: GO:0033605 ! positive regulation of catecholamine secretion -is_a: GO:0050433 {is_inferred="true"} ! regulation of catecholamine secretion -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] id: GO:0033609 ! oxalate metabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process @@ -28889,23 +27404,6 @@ is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part [Term] -id: GO:0034248 ! regulation of cellular amide metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process - -[Term] -id: GO:0034249 ! negative regulation of cellular amide metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process - -[Term] -id: GO:0034250 ! positive regulation of cellular amide metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process - -[Term] id: GO:0034251 ! regulation of cellular amide catabolic process is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process is_a: GO:0034248 {is_inferred="true"} ! regulation of cellular amide metabolic process @@ -29405,10 +27903,6 @@ is_a: GO:0042148 {is_inferred="true"} ! strand invasion [Term] -id: GO:0034637 ! cellular carbohydrate biosynthetic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0034638 ! phosphatidylcholine catabolic process is_a: GO:0046470 {is_inferred="true"} ! phosphatidylcholine metabolic process is_a: GO:0046475 {is_inferred="true"} ! glycerophospholipid catabolic process @@ -30900,15 +29394,6 @@ is_a: GO:0051029 {is_inferred="true"} ! rRNA transport [Term] -id: GO:0035929 ! steroid hormone secretion -is_a: GO:0006869 {is_inferred="true"} ! lipid transport - -[Term] -id: GO:0035932 ! aldosterone secretion -is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport -is_a: GO:0035931 {is_inferred="true"} ! mineralocorticoid secretion - -[Term] id: GO:0035934 ! corticosterone secretion is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport is_a: GO:0035933 {is_inferred="true"} ! glucocorticoid secretion @@ -31615,10 +30100,6 @@ is_a: GO:0046628 {is_inferred="true"} ! positive regulation of insulin receptor signaling pathway [Term] -id: GO:0038023 ! signaling receptor activity -is_a: GO:0004872 {is_inferred="true"} ! receptor activity - -[Term] id: GO:0038024 ! cargo receptor activity is_a: GO:0004872 {is_inferred="true"} ! receptor activity @@ -31893,19 +30374,6 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] -id: GO:0040008 ! regulation of growth -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0040012 ! regulation of locomotion -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0040013 ! negative regulation of locomotion -is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] id: GO:0040014 ! regulation of multicellular organism growth is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process @@ -31917,11 +30385,6 @@ is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] -id: GO:0040017 ! positive regulation of locomotion -is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] id: GO:0040018 ! positive regulation of multicellular organism growth is_a: GO:0040014 {is_inferred="true"} ! regulation of multicellular organism growth is_a: GO:0048639 {is_inferred="true"} ! positive regulation of developmental growth @@ -31928,16 +30391,8 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] -id: GO:0040019 ! positive regulation of embryonic development -is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:0040020 ! regulation of meiotic nuclear division is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process -is_a: GO:0051445 {is_inferred="true"} ! regulation of meiotic cell cycle -is_a: GO:0051783 {is_inferred="true"} ! regulation of nuclear division [Term] id: GO:0040023 ! establishment of nucleus localization @@ -32083,10 +30538,6 @@ is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process [Term] -id: GO:0042110 ! T cell activation -is_a: GO:0070489 {is_inferred="true"} ! T cell aggregation - -[Term] id: GO:0042119 ! neutrophil activation is_a: GO:0036230 {is_inferred="true"} ! granulocyte activation @@ -32196,16 +30647,6 @@ is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process [Term] -id: GO:0042180 ! cellular ketone metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] -id: GO:0042181 ! ketone biosynthetic process -is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:0042182 ! ketone catabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process @@ -32404,10 +30845,6 @@ is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] -id: GO:0042221 ! response to chemical -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus - -[Term] id: GO:0042222 ! interleukin-1 biosynthetic process is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process @@ -32576,21 +31013,10 @@ is_a: GO:0045187 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, sleep [Term] -id: GO:0042321 ! negative regulation of circadian sleep/wake cycle, sleep -is_a: GO:0042754 {is_inferred="true"} ! negative regulation of circadian rhythm -is_a: GO:0045187 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, sleep -is_a: GO:0048521 {is_inferred="true"} ! negative regulation of behavior -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] id: GO:0042322 ! negative regulation of circadian sleep/wake cycle, REM sleep is_a: GO:0042320 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, REM sleep [Term] -id: GO:0042323 ! negative regulation of circadian sleep/wake cycle, non-REM sleep -is_a: GO:0045188 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, non-REM sleep - -[Term] id: GO:0042325 ! regulation of phosphorylation is_a: GO:0019220 {is_inferred="true"} ! regulation of phosphate metabolic process @@ -32886,13 +31312,6 @@ is_a: GO:1901162 {is_inferred="true"} ! primary amino compound biosynthetic process [Term] -id: GO:0042428 ! serotonin metabolic process -is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process -is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process -is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process -is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process - -[Term] id: GO:0042429 ! serotonin catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0042428 {is_inferred="true"} ! serotonin metabolic process @@ -32900,13 +31319,6 @@ is_a: GO:1901161 {is_inferred="true"} ! primary amino compound catabolic process [Term] -id: GO:0042430 ! indole-containing compound metabolic process -is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:0042431 ! indole metabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process @@ -32921,14 +31333,6 @@ is_a: GO:0042436 {is_inferred="true"} ! indole-containing compound catabolic process [Term] -id: GO:0042435 ! indole-containing compound biosynthetic process -is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process -is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process -is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process - -[Term] id: GO:0042436 ! indole-containing compound catabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process @@ -33476,10 +31880,6 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] -id: GO:0042701 ! progesterone secretion -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism - -[Term] id: GO:0042702 ! uterine wall growth is_a: GO:0040007 {is_inferred="true"} ! growth @@ -33563,11 +31963,6 @@ is_a: GO:0042743 {is_inferred="true"} ! hydrogen peroxide metabolic process [Term] -id: GO:0042749 ! regulation of circadian sleep/wake cycle -is_a: GO:0042752 {is_inferred="true"} ! regulation of circadian rhythm -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] id: GO:0042750 ! hibernation is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -33576,20 +31971,6 @@ is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] -id: GO:0042752 ! regulation of circadian rhythm -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0042753 ! positive regulation of circadian rhythm -is_a: GO:0042752 {is_inferred="true"} ! regulation of circadian rhythm -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] -id: GO:0042754 ! negative regulation of circadian rhythm -is_a: GO:0042752 {is_inferred="true"} ! regulation of circadian rhythm -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] id: GO:0042758 ! long-chain fatty acid catabolic process is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process @@ -33957,10 +32338,6 @@ is_a: GO:0042884 {is_inferred="true"} ! microcin transport [Term] -id: GO:0042886 ! amide transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport - -[Term] id: GO:0042888 ! molybdenum ion transmembrane transporter activity is_a: GO:0046915 {is_inferred="true"} ! transition metal ion transmembrane transporter activity @@ -34518,10 +32895,6 @@ is_a: GO:0043167 {is_inferred="true"} ! ion binding [Term] -id: GO:0043170 ! macromolecule metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:0043171 ! peptide catabolic process is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process @@ -34595,16 +32968,6 @@ is_a: GO:0019005 {is_inferred="true"} ! SCF ubiquitin ligase complex [Term] -id: GO:0043229 ! intracellular organelle -is_a: GO:0043226 {is_inferred="true"} ! organelle -is_a: GO:0044424 {is_inferred="true"} ! intracellular part - -[Term] -id: GO:0043230 ! extracellular organelle -is_a: GO:0043226 {is_inferred="true"} ! organelle -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0043233 ! organelle lumen is_a: GO:0031974 {is_inferred="true"} ! membrane-enclosed lumen is_a: GO:0044422 {is_inferred="true"} ! organelle part @@ -34642,11 +33005,6 @@ is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] -id: GO:0043255 ! regulation of carbohydrate biosynthetic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process - -[Term] id: GO:0043266 ! regulation of potassium ion transport is_a: GO:0010959 {is_inferred="true"} ! regulation of metal ion transport @@ -34661,20 +33019,6 @@ is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport [Term] -id: GO:0043269 ! regulation of ion transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0043270 ! positive regulation of ion transport -is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport - -[Term] -id: GO:0043271 ! negative regulation of ion transport -is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport - -[Term] id: GO:0043272 ! ethylene biosynthesis involved in jasmonic acid and ethylene-dependent systemic resistance is_a: GO:0009693 {is_inferred="true"} ! ethylene biosynthetic process @@ -34733,8 +33077,13 @@ is_a: GO:0007043 {is_inferred="true"} ! cell-cell junction assembly [Term] +id: GO:0043299 ! leukocyte degranulation +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:0043300 ! regulation of leukocyte degranulation is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization is_a: GO:1903305 {is_inferred="true"} ! regulation of regulated secretory pathway [Term] @@ -35203,20 +33552,6 @@ is_a: GO:0043467 {is_inferred="true"} ! regulation of generation of precursor metabolites and energy [Term] -id: GO:0043467 ! regulation of generation of precursor metabolites and energy -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:0043470 ! regulation of carbohydrate catabolic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process - -[Term] -id: GO:0043471 ! regulation of cellular carbohydrate catabolic process -is_a: GO:0010675 {is_inferred="true"} ! regulation of cellular carbohydrate metabolic process -is_a: GO:0043470 {is_inferred="true"} ! regulation of carbohydrate catabolic process - -[Term] id: GO:0043474 ! pigment metabolic process involved in pigmentation is_a: GO:0042440 {is_inferred="true"} ! pigment metabolic process @@ -35446,10 +33781,6 @@ is_a: GO:0006810 {is_inferred="true"} ! transport [Term] -id: GO:0043576 ! regulation of respiratory gaseous exchange -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] id: GO:0043579 ! elaioplast organization is_a: GO:0009657 {is_inferred="true"} ! plastid organization @@ -35509,10 +33840,6 @@ is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] -id: GO:0043604 ! amide biosynthetic process -is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process - -[Term] id: GO:0043606 ! formamide metabolic process is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process @@ -35553,10 +33880,6 @@ is_a: GO:0046247 {is_inferred="true"} ! terpene catabolic process [Term] -id: GO:0043616 ! keratinocyte proliferation -is_a: GO:0050673 {is_inferred="true"} ! epithelial cell proliferation - -[Term] id: GO:0043622 ! cortical microtubule organization is_a: GO:0031122 {is_inferred="true"} ! cytoplasmic microtubule organization @@ -35642,10 +33965,6 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] -id: GO:0043648 ! dicarboxylic acid metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process - -[Term] id: GO:0043649 ! dicarboxylic acid catabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process @@ -35749,20 +34068,6 @@ is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity [Term] -id: GO:0043900 ! regulation of multi-organism process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0043901 ! negative regulation of multi-organism process -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] -id: GO:0043902 ! positive regulation of multi-organism process -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] id: GO:0043903 ! regulation of symbiosis, encompassing mutualism through parasitism is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process @@ -35897,35 +34202,6 @@ is_a: GO:0044035 {is_inferred="true"} ! multi-organism catabolic process [Term] -id: GO:0044042 ! glucan metabolic process -is_a: GO:0005976 {is_inferred="true"} ! polysaccharide metabolic process - -[Term] -id: GO:0044057 ! regulation of system process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:0044058 ! regulation of digestive system process -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:0044060 ! regulation of endocrine process -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:0044062 ! regulation of excretion -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:0044065 ! regulation of respiratory system process -is_a: GO:0043576 {is_inferred="true"} ! regulation of respiratory gaseous exchange -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:0044070 ! regulation of anion transport -is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport - -[Term] id: GO:0044088 ! regulation of vacuole organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization @@ -35944,14 +34220,6 @@ is_a: GO:0044085 {is_inferred="true"} ! cellular component biogenesis [Term] -id: GO:0044092 ! negative regulation of molecular function -is_a: GO:0065009 {is_inferred="true"} ! regulation of molecular function - -[Term] -id: GO:0044093 ! positive regulation of molecular function -is_a: GO:0065009 {is_inferred="true"} ! regulation of molecular function - -[Term] id: GO:0044107 ! cellular alcohol metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process @@ -36190,30 +34458,10 @@ is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] -id: GO:0044420 ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] -id: GO:0044421 ! extracellular region part -is_a: GO:0005575 {is_inferred="true"} ! cellular_component - -[Term] -id: GO:0044422 ! organelle part -is_a: GO:0005575 {is_inferred="true"} ! cellular_component - -[Term] id: GO:0044423 ! virion part is_a: GO:0005575 {is_inferred="true"} ! cellular_component [Term] -id: GO:0044424 ! intracellular part -is_a: GO:0044464 {is_inferred="true"} ! cell part - -[Term] -id: GO:0044425 ! membrane part -is_a: GO:0005575 {is_inferred="true"} ! cellular_component - -[Term] id: GO:0044426 ! cell wall part is_a: GO:0044462 {is_inferred="true"} ! external encapsulating structure part @@ -36230,10 +34478,6 @@ is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] -id: GO:0044433 ! cytoplasmic vesicle part -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part - -[Term] id: GO:0044434 ! chloroplast part is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -36262,36 +34506,18 @@ is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part [Term] -id: GO:0044441 ! ciliary part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part - -[Term] id: GO:0044443 ! pilus part is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] -id: GO:0044444 ! cytoplasmic part -is_a: GO:0044424 {is_inferred="true"} ! intracellular part - -[Term] id: GO:0044445 ! cytosolic part is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] -id: GO:0044447 ! axoneme part -is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part -is_a: GO:0044441 {is_inferred="true"} ! ciliary part - -[Term] id: GO:0044448 ! cell cortex part is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] -id: GO:0044449 ! contractile fiber part -is_a: GO:0044422 {is_inferred="true"} ! organelle part -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part - -[Term] id: GO:0044450 ! microtubule organizing center part is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part @@ -36331,11 +34557,6 @@ is_a: GO:0060271 {is_inferred="true"} ! cilium assembly [Term] -id: GO:0044459 ! plasma membrane part -is_a: GO:0044425 {is_inferred="true"} ! membrane part -is_a: GO:0044464 {is_inferred="true"} ! cell part - -[Term] id: GO:0044461 ! bacterial-type flagellum part is_a: GO:0044422 {is_inferred="true"} ! organelle part @@ -36344,14 +34565,6 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] -id: GO:0044463 ! cell projection part -is_a: GO:0044464 {is_inferred="true"} ! cell part - -[Term] -id: GO:0044464 ! cell part -is_a: GO:0005575 {is_inferred="true"} ! cellular_component - -[Term] id: GO:0044477 ! envenomation resulting in negative regulation of platelet aggregation in other organism is_a: GO:0044365 {is_inferred="true"} ! envenomation resulting in modulation of platelet aggregation in other organism @@ -36476,22 +34689,6 @@ is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction [Term] -id: GO:0044703 ! multi-organism reproductive process -is_a: GO:0051704 {is_inferred="true"} ! multi-organism process - -[Term] -id: GO:0044710 ! single-organism metabolic process -is_a: GO:0044699 {is_inferred="true"} ! single-organism process - -[Term] -id: GO:0044723 ! single-organism carbohydrate metabolic process -is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process - -[Term] -id: GO:0044724 ! single-organism carbohydrate catabolic process -is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process - -[Term] id: GO:0044731 ! Ost-alpha/Ost-beta complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -36537,10 +34734,6 @@ is_a: GO:0051704 {is_inferred="true"} ! multi-organism process [Term] -id: GO:0044765 ! single-organism transport -is_a: GO:1902578 {is_inferred="true"} ! single-organism localization - -[Term] id: GO:0044766 ! multi-organism transport is_a: GO:1902579 {is_inferred="true"} ! multi-organism localization @@ -36599,10 +34792,6 @@ is_a: GO:0098803 {is_inferred="true"} ! respiratory chain complex [Term] -id: GO:0044802 ! single-organism membrane organization -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:0044803 ! multi-organism membrane organization is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process @@ -36966,14 +35155,6 @@ is_a: GO:0034333 {is_inferred="true"} ! adherens junction assembly [Term] -id: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep -is_a: GO:0042749 {is_inferred="true"} ! regulation of circadian sleep/wake cycle - -[Term] -id: GO:0045188 ! regulation of circadian sleep/wake cycle, non-REM sleep -is_a: GO:0045187 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, sleep - -[Term] id: GO:0045189 ! connective tissue growth factor biosynthetic process is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process @@ -38026,40 +36207,6 @@ is_a: GO:0036230 {is_inferred="true"} ! granulocyte activation [Term] -id: GO:0045577 ! regulation of B cell differentiation -is_a: GO:0045619 {is_inferred="true"} ! regulation of lymphocyte differentiation -is_a: GO:0050864 {is_inferred="true"} ! regulation of B cell activation - -[Term] -id: GO:0045578 ! negative regulation of B cell differentiation -is_a: GO:0045577 {is_inferred="true"} ! regulation of B cell differentiation -is_a: GO:0045620 {is_inferred="true"} ! negative regulation of lymphocyte differentiation -is_a: GO:0050869 {is_inferred="true"} ! negative regulation of B cell activation - -[Term] -id: GO:0045579 ! positive regulation of B cell differentiation -is_a: GO:0045577 {is_inferred="true"} ! regulation of B cell differentiation -is_a: GO:0045621 {is_inferred="true"} ! positive regulation of lymphocyte differentiation -is_a: GO:0050871 {is_inferred="true"} ! positive regulation of B cell activation - -[Term] -id: GO:0045580 ! regulation of T cell differentiation -is_a: GO:0045619 {is_inferred="true"} ! regulation of lymphocyte differentiation -is_a: GO:0050863 {is_inferred="true"} ! regulation of T cell activation - -[Term] -id: GO:0045581 ! negative regulation of T cell differentiation -is_a: GO:0045580 {is_inferred="true"} ! regulation of T cell differentiation -is_a: GO:0045620 {is_inferred="true"} ! negative regulation of lymphocyte differentiation -is_a: GO:0050868 {is_inferred="true"} ! negative regulation of T cell activation - -[Term] -id: GO:0045582 ! positive regulation of T cell differentiation -is_a: GO:0045580 {is_inferred="true"} ! regulation of T cell differentiation -is_a: GO:0045621 {is_inferred="true"} ! positive regulation of lymphocyte differentiation -is_a: GO:0050870 {is_inferred="true"} ! positive regulation of T cell activation - -[Term] id: GO:0045583 ! regulation of cytotoxic T cell differentiation is_a: GO:0045580 {is_inferred="true"} ! regulation of T cell differentiation @@ -38129,23 +36276,6 @@ is_a: GO:2000388 {is_inferred="true"} ! positive regulation of antral ovarian follicle growth [Term] -id: GO:0045595 ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0045596 ! negative regulation of cell differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process - -[Term] -id: GO:0045597 ! positive regulation of cell differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process - -[Term] id: GO:0045598 ! regulation of fat cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation @@ -38174,21 +36304,6 @@ is_a: GO:0045601 {is_inferred="true"} ! regulation of endothelial cell differentiation [Term] -id: GO:0045604 ! regulation of epidermal cell differentiation -is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation -is_a: GO:0045682 {is_inferred="true"} ! regulation of epidermis development - -[Term] -id: GO:0045605 ! negative regulation of epidermal cell differentiation -is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation -is_a: GO:0045604 {is_inferred="true"} ! regulation of epidermal cell differentiation - -[Term] -id: GO:0045606 ! positive regulation of epidermal cell differentiation -is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation -is_a: GO:0045604 {is_inferred="true"} ! regulation of epidermal cell differentiation - -[Term] id: GO:0045607 ! regulation of auditory receptor cell differentiation is_a: GO:0045604 {is_inferred="true"} ! regulation of epidermal cell differentiation is_a: GO:2000980 {is_inferred="true"} ! regulation of inner ear receptor cell differentiation @@ -38239,37 +36354,6 @@ is_a: GO:0045613 {is_inferred="true"} ! regulation of plasmatocyte differentiation [Term] -id: GO:0045616 ! regulation of keratinocyte differentiation -is_a: GO:0045604 {is_inferred="true"} ! regulation of epidermal cell differentiation - -[Term] -id: GO:0045617 ! negative regulation of keratinocyte differentiation -is_a: GO:0045605 {is_inferred="true"} ! negative regulation of epidermal cell differentiation -is_a: GO:0045616 {is_inferred="true"} ! regulation of keratinocyte differentiation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0045618 ! positive regulation of keratinocyte differentiation -is_a: GO:0045606 {is_inferred="true"} ! positive regulation of epidermal cell differentiation -is_a: GO:0045616 {is_inferred="true"} ! regulation of keratinocyte differentiation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] -id: GO:0045619 ! regulation of lymphocyte differentiation -is_a: GO:1902105 {is_inferred="true"} ! regulation of leukocyte differentiation - -[Term] -id: GO:0045620 ! negative regulation of lymphocyte differentiation -is_a: GO:0045619 {is_inferred="true"} ! regulation of lymphocyte differentiation -is_a: GO:0051250 {is_inferred="true"} ! negative regulation of lymphocyte activation -is_a: GO:1902106 {is_inferred="true"} ! negative regulation of leukocyte differentiation - -[Term] -id: GO:0045621 ! positive regulation of lymphocyte differentiation -is_a: GO:0051251 {is_inferred="true"} ! positive regulation of lymphocyte activation -is_a: GO:1902107 {is_inferred="true"} ! positive regulation of leukocyte differentiation - -[Term] id: GO:0045622 ! regulation of T-helper cell differentiation is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process is_a: GO:0043370 {is_inferred="true"} ! regulation of CD4-positive, alpha-beta T cell differentiation @@ -38562,20 +36646,6 @@ is_a: GO:0046534 {is_inferred="true"} ! positive regulation of photoreceptor cell differentiation [Term] -id: GO:0045682 ! regulation of epidermis development -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] -id: GO:0045683 ! negative regulation of epidermis development -is_a: GO:0045682 {is_inferred="true"} ! regulation of epidermis development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process - -[Term] -id: GO:0045684 ! positive regulation of epidermis development -is_a: GO:0045682 {is_inferred="true"} ! regulation of epidermis development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process - -[Term] id: GO:0045685 ! regulation of glial cell differentiation is_a: GO:0014013 {is_inferred="true"} ! regulation of gliogenesis @@ -38759,12 +36829,6 @@ is_a: GO:0051055 {is_inferred="true"} ! negative regulation of lipid biosynthetic process [Term] -id: GO:0045719 ! negative regulation of glycogen biosynthetic process -is_a: GO:0005979 {is_inferred="true"} ! regulation of glycogen biosynthetic process -is_a: GO:0070874 {is_inferred="true"} ! negative regulation of glycogen metabolic process -is_a: GO:2000113 {is_inferred="true"} ! negative regulation of cellular macromolecule biosynthetic process - -[Term] id: GO:0045720 ! negative regulation of integrin biosynthetic process is_a: GO:0010558 {is_inferred="true"} ! negative regulation of macromolecule biosynthetic process is_a: GO:0045113 {is_inferred="true"} ! regulation of integrin biosynthetic process @@ -38792,13 +36856,6 @@ is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly [Term] -id: GO:0045725 ! positive regulation of glycogen biosynthetic process -is_a: GO:0005979 {is_inferred="true"} ! regulation of glycogen biosynthetic process -is_a: GO:0010557 {is_inferred="true"} ! positive regulation of macromolecule biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0070875 {is_inferred="true"} ! positive regulation of glycogen metabolic process - -[Term] id: GO:0045726 ! positive regulation of integrin biosynthetic process is_a: GO:0010557 {is_inferred="true"} ! positive regulation of macromolecule biosynthetic process is_a: GO:0045113 {is_inferred="true"} ! regulation of integrin biosynthetic process @@ -38950,24 +37007,6 @@ is_a: GO:0051349 {is_inferred="true"} ! positive regulation of lyase activity [Term] -id: GO:0045763 ! negative regulation of cellular amino acid metabolic process -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process - -[Term] -id: GO:0045764 ! positive regulation of cellular amino acid metabolic process -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process - -[Term] -id: GO:0045765 ! regulation of angiogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development - -[Term] -id: GO:0045766 ! positive regulation of angiogenesis -is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis -is_a: GO:1904018 {is_inferred="true"} ! positive regulation of vasculature development - -[Term] id: GO:0045769 ! negative regulation of asymmetric cell division is_a: GO:0009786 {is_inferred="true"} ! regulation of asymmetric cell division is_a: GO:0051782 {is_inferred="true"} ! negative regulation of cell division @@ -38994,11 +37033,6 @@ is_a: GO:0045726 {is_inferred="true"} ! positive regulation of integrin biosynthetic process [Term] -id: GO:0045778 ! positive regulation of ossification -is_a: GO:0030278 {is_inferred="true"} ! regulation of ossification -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:0045779 ! negative regulation of bone resorption is_a: GO:0032845 {is_inferred="true"} ! negative regulation of homeostatic process is_a: GO:0045124 {is_inferred="true"} ! regulation of bone resorption @@ -39021,21 +37055,6 @@ is_a: GO:1903666 {is_inferred="true"} ! positive regulation of asexual reproduction [Term] -id: GO:0045785 ! positive regulation of cell adhesion -is_a: GO:0030155 {is_inferred="true"} ! regulation of cell adhesion -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] -id: GO:0045786 ! negative regulation of cell cycle -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051726 {is_inferred="true"} ! regulation of cell cycle - -[Term] -id: GO:0045787 ! positive regulation of cell cycle -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051726 {is_inferred="true"} ! regulation of cell cycle - -[Term] id: GO:0045796 ! negative regulation of intestinal cholesterol absorption is_a: GO:0030300 {is_inferred="true"} ! regulation of intestinal cholesterol absorption is_a: GO:0032375 {is_inferred="true"} ! negative regulation of cholesterol transport @@ -39116,16 +37135,6 @@ is_a: GO:2000052 {is_inferred="true"} ! positive regulation of non-canonical Wnt signaling pathway [Term] -id: GO:0045818 ! negative regulation of glycogen catabolic process -is_a: GO:0005981 {is_inferred="true"} ! regulation of glycogen catabolic process -is_a: GO:0070874 {is_inferred="true"} ! negative regulation of glycogen metabolic process - -[Term] -id: GO:0045819 ! positive regulation of glycogen catabolic process -is_a: GO:0005981 {is_inferred="true"} ! regulation of glycogen catabolic process -is_a: GO:0070875 {is_inferred="true"} ! positive regulation of glycogen metabolic process - -[Term] id: GO:0045820 ! negative regulation of glycolytic process is_a: GO:0006110 {is_inferred="true"} ! regulation of glycolytic process is_a: GO:0009895 {is_inferred="true"} ! negative regulation of catabolic process @@ -39142,16 +37151,6 @@ is_a: GO:1903580 {is_inferred="true"} ! positive regulation of ATP metabolic process [Term] -id: GO:0045822 ! negative regulation of heart contraction -is_a: GO:0008016 {is_inferred="true"} ! regulation of heart contraction -is_a: GO:1903523 {is_inferred="true"} ! negative regulation of blood circulation - -[Term] -id: GO:0045823 ! positive regulation of heart contraction -is_a: GO:0008016 {is_inferred="true"} ! regulation of heart contraction -is_a: GO:1903524 {is_inferred="true"} ! positive regulation of blood circulation - -[Term] id: GO:0045824 ! negative regulation of innate immune response is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0045088 {is_inferred="true"} ! regulation of innate immune response @@ -39200,27 +37199,11 @@ is_a: GO:0032414 {is_inferred="true"} ! positive regulation of ion transmembrane transporter activity [Term] -id: GO:0045833 ! negative regulation of lipid metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0019216 {is_inferred="true"} ! regulation of lipid metabolic process - -[Term] -id: GO:0045834 ! positive regulation of lipid metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0019216 {is_inferred="true"} ! regulation of lipid metabolic process - -[Term] id: GO:0045835 ! negative regulation of meiotic nuclear division is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process -is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division -is_a: GO:0051447 {is_inferred="true"} ! negative regulation of meiotic cell cycle -is_a: GO:0051784 {is_inferred="true"} ! negative regulation of nuclear division [Term] id: GO:0045836 ! positive regulation of meiotic nuclear division -is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division -is_a: GO:0051446 {is_inferred="true"} ! positive regulation of meiotic cell cycle -is_a: GO:0051785 {is_inferred="true"} ! positive regulation of nuclear division is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process [Term] @@ -39499,24 +37482,6 @@ is_a: GO:0051054 {is_inferred="true"} ! positive regulation of DNA metabolic process [Term] -id: GO:0045912 ! negative regulation of carbohydrate metabolic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process - -[Term] -id: GO:0045913 ! positive regulation of carbohydrate metabolic process -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process - -[Term] -id: GO:0045914 ! negative regulation of catecholamine metabolic process -is_a: GO:0042069 {is_inferred="true"} ! regulation of catecholamine metabolic process - -[Term] -id: GO:0045915 ! positive regulation of catecholamine metabolic process -is_a: GO:0042069 {is_inferred="true"} ! regulation of catecholamine metabolic process - -[Term] id: GO:0045916 ! negative regulation of complement activation is_a: GO:0002698 {is_inferred="true"} ! negative regulation of immune effector process is_a: GO:0002921 {is_inferred="true"} ! negative regulation of humoral immune response @@ -39541,16 +37506,6 @@ is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process [Term] -id: GO:0045920 ! negative regulation of exocytosis -is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] -id: GO:0045921 ! positive regulation of exocytosis -is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] id: GO:0045922 ! negative regulation of fatty acid metabolic process is_a: GO:0019217 {is_inferred="true"} ! regulation of fatty acid metabolic process is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process @@ -39563,16 +37518,6 @@ is_a: GO:0045834 {is_inferred="true"} ! positive regulation of lipid metabolic process [Term] -id: GO:0045926 ! negative regulation of growth -is_a: GO:0040008 {is_inferred="true"} ! regulation of growth -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process - -[Term] -id: GO:0045927 ! positive regulation of growth -is_a: GO:0040008 {is_inferred="true"} ! regulation of growth -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process - -[Term] id: GO:0045928 ! negative regulation of juvenile hormone metabolic process is_a: GO:0007556 {is_inferred="true"} ! regulation of juvenile hormone metabolic process is_a: GO:0032351 {is_inferred="true"} ! negative regulation of hormone metabolic process @@ -39595,16 +37540,6 @@ is_a: GO:0045787 {is_inferred="true"} ! positive regulation of cell cycle [Term] -id: GO:0045932 ! negative regulation of muscle contraction -is_a: GO:0006937 {is_inferred="true"} ! regulation of muscle contraction -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0045933 ! positive regulation of muscle contraction -is_a: GO:0006937 {is_inferred="true"} ! regulation of muscle contraction -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0019219 {is_inferred="true"} ! regulation of nucleobase-containing compound metabolic process is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process @@ -39627,23 +37562,6 @@ is_a: GO:0019220 {is_inferred="true"} ! regulation of phosphate metabolic process [Term] -id: GO:0045938 ! positive regulation of circadian sleep/wake cycle, sleep -is_a: GO:0042753 {is_inferred="true"} ! positive regulation of circadian rhythm -is_a: GO:0045187 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, sleep -is_a: GO:0048520 {is_inferred="true"} ! positive regulation of behavior -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] -id: GO:0045939 ! negative regulation of steroid metabolic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process -is_a: GO:0045833 {is_inferred="true"} ! negative regulation of lipid metabolic process - -[Term] -id: GO:0045940 ! positive regulation of steroid metabolic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process -is_a: GO:0045834 {is_inferred="true"} ! positive regulation of lipid metabolic process - -[Term] id: GO:0045942 ! negative regulation of phosphorus utilization is_a: GO:0006795 {is_inferred="true"} ! regulation of phosphorus utilization is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process @@ -39861,36 +37779,6 @@ is_a: GO:0045935 {is_inferred="true"} ! positive regulation of nucleobase-containing compound metabolic process [Term] -id: GO:0045986 ! negative regulation of smooth muscle contraction -is_a: GO:0006940 {is_inferred="true"} ! regulation of smooth muscle contraction -is_a: GO:0045932 {is_inferred="true"} ! negative regulation of muscle contraction - -[Term] -id: GO:0045987 ! positive regulation of smooth muscle contraction -is_a: GO:0006940 {is_inferred="true"} ! regulation of smooth muscle contraction -is_a: GO:0045933 {is_inferred="true"} ! positive regulation of muscle contraction - -[Term] -id: GO:0045988 ! negative regulation of striated muscle contraction -is_a: GO:0006942 {is_inferred="true"} ! regulation of striated muscle contraction -is_a: GO:0045932 {is_inferred="true"} ! negative regulation of muscle contraction - -[Term] -id: GO:0045989 ! positive regulation of striated muscle contraction -is_a: GO:0006942 {is_inferred="true"} ! regulation of striated muscle contraction -is_a: GO:0045933 {is_inferred="true"} ! positive regulation of muscle contraction - -[Term] -id: GO:0045992 ! negative regulation of embryonic development -is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0045995 ! regulation of embryonic development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] id: GO:0045997 ! negative regulation of ecdysteroid biosynthetic process is_a: GO:0007554 {is_inferred="true"} ! regulation of ecdysteroid biosynthetic process is_a: GO:0045965 {is_inferred="true"} ! negative regulation of ecdysteroid metabolic process @@ -39944,10 +37832,6 @@ is_a: GO:0046006 {is_inferred="true"} ! regulation of activated T cell proliferation [Term] -id: GO:0046010 ! positive regulation of circadian sleep/wake cycle, non-REM sleep -is_a: GO:0045188 {is_inferred="true"} ! regulation of circadian sleep/wake cycle, non-REM sleep - -[Term] id: GO:0046013 ! regulation of T cell homeostatic proliferation is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process is_a: GO:0042129 {is_inferred="true"} ! regulation of T cell proliferation @@ -40712,12 +38596,6 @@ is_a: GO:0046176 {is_inferred="true"} ! aldonic acid catabolic process [Term] -id: GO:0046184 ! aldehyde biosynthetic process -is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process -is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:0046185 ! aldehyde catabolic process is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process @@ -41535,10 +39413,6 @@ is_a: GO:0019580 {is_inferred="true"} ! galactarate metabolic process [Term] -id: GO:0046394 ! carboxylic acid biosynthetic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process - -[Term] id: GO:0046395 ! carboxylic acid catabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process @@ -42081,6 +39955,7 @@ [Term] id: GO:0046595 ! establishment of pole plasm mRNA localization is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:1902578 {is_inferred="true"} ! single-organism localization [Term] @@ -42359,12 +40234,6 @@ is_a: GO:0046671 {is_inferred="true"} ! negative regulation of retinal cell programmed cell death [Term] -id: GO:0046676 ! negative regulation of insulin secretion -is_a: GO:0050709 {is_inferred="true"} ! negative regulation of protein secretion -is_a: GO:0050796 {is_inferred="true"} ! regulation of insulin secretion -is_a: GO:0090278 {is_inferred="true"} ! negative regulation of peptide hormone secretion - -[Term] id: GO:0046677 ! response to antibiotic is_a: GO:0042221 {is_inferred="true"} ! response to chemical @@ -42418,10 +40287,6 @@ is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance [Term] -id: GO:0046692 ! sperm competition -is_a: GO:0044703 {is_inferred="true"} ! multi-organism reproductive process - -[Term] id: GO:0046700 ! heterocycle catabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process @@ -42681,18 +40546,6 @@ is_a: GO:0005501 {is_inferred="true"} ! retinoid binding [Term] -id: GO:0046877 ! regulation of saliva secretion -is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process -is_a: GO:0050878 {is_inferred="true"} ! regulation of body fluid levels -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion - -[Term] -id: GO:0046878 ! positive regulation of saliva secretion -is_a: GO:0046877 {is_inferred="true"} ! regulation of saliva secretion -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:0060456 {is_inferred="true"} ! positive regulation of digestive system process - -[Term] id: GO:0046880 ! regulation of follicle-stimulating hormone secretion is_a: GO:0032276 {is_inferred="true"} ! regulation of gonadotropin secretion @@ -42707,47 +40560,6 @@ is_a: GO:0046880 {is_inferred="true"} ! regulation of follicle-stimulating hormone secretion [Term] -id: GO:0046883 ! regulation of hormone secretion -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0010817 {is_inferred="true"} ! regulation of hormone levels -is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] -id: GO:0046885 ! regulation of hormone biosynthetic process -is_a: GO:0032350 {is_inferred="true"} ! regulation of hormone metabolic process - -[Term] -id: GO:0046886 ! positive regulation of hormone biosynthetic process -is_a: GO:0032352 {is_inferred="true"} ! positive regulation of hormone metabolic process -is_a: GO:0046885 {is_inferred="true"} ! regulation of hormone biosynthetic process - -[Term] -id: GO:0046887 ! positive regulation of hormone secretion -is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication -is_a: GO:0023056 {is_inferred="true"} ! positive regulation of signaling -is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] -id: GO:0046888 ! negative regulation of hormone secretion -is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication -is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling -is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] -id: GO:0046889 ! positive regulation of lipid biosynthetic process -is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process -is_a: GO:0045834 {is_inferred="true"} ! positive regulation of lipid metabolic process -is_a: GO:0046890 {is_inferred="true"} ! regulation of lipid biosynthetic process - -[Term] -id: GO:0046890 ! regulation of lipid biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0019216 {is_inferred="true"} ! regulation of lipid metabolic process - -[Term] id: GO:0046898 ! response to cycloheximide is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound @@ -42823,11 +40635,6 @@ is_a: GO:0046937 {is_inferred="true"} ! phytochelatin metabolic process [Term] -id: GO:0046942 ! carboxylic acid transport -is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport - -[Term] id: GO:0046943 ! carboxylic acid transmembrane transporter activity is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity @@ -43246,10 +41053,6 @@ is_a: GO:0097425 {is_inferred="true"} ! smooth endoplasmic reticulum part [Term] -id: GO:0048240 ! sperm capacitation -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism - -[Term] id: GO:0048241 ! epinephrine transport is_a: GO:0051937 {is_inferred="true"} ! catecholamine transport @@ -43260,11 +41063,6 @@ is_a: GO:0050432 {is_inferred="true"} ! catecholamine secretion [Term] -id: GO:0048243 ! norepinephrine secretion -is_a: GO:0015874 {is_inferred="true"} ! norepinephrine transport -is_a: GO:0050432 {is_inferred="true"} ! catecholamine secretion - -[Term] id: GO:0048245 ! eosinophil chemotaxis is_a: GO:0071621 {is_inferred="true"} ! granulocyte chemotaxis @@ -43630,10 +41428,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0048469 ! cell maturation -is_a: GO:0021700 {is_inferred="true"} ! developmental maturation - -[Term] id: GO:0048473 ! D-methionine transport is_a: GO:0015821 {is_inferred="true"} ! methionine transport is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport @@ -43644,10 +41438,6 @@ is_a: GO:0043865 {is_inferred="true"} ! methionine transmembrane transporter activity [Term] -id: GO:0048477 ! oogenesis -is_a: GO:0007281 {is_inferred="true"} ! germ cell development - -[Term] id: GO:0048481 ! plant ovule development is_a: GO:0099402 {is_inferred="true"} ! plant organ development @@ -43699,39 +41489,6 @@ is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] -id: GO:0048515 ! spermatid differentiation -is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0030154 {is_inferred="true"} ! cell differentiation - -[Term] -id: GO:0048518 ! positive regulation of biological process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0048519 ! negative regulation of biological process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0048520 ! positive regulation of behavior -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] -id: GO:0048521 ! negative regulation of behavior -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] -id: GO:0048522 ! positive regulation of cellular process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0048523 ! negative regulation of cellular process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] id: GO:0048524 ! positive regulation of viral process is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process @@ -43820,36 +41577,6 @@ is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] -id: GO:0048580 ! regulation of post-embryonic development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:0048581 ! negative regulation of post-embryonic development -is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0048582 ! positive regulation of post-embryonic development -is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] -id: GO:0048583 ! regulation of response to stimulus -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0048584 ! positive regulation of response to stimulus -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] -id: GO:0048585 ! negative regulation of response to stimulus -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] id: GO:0048586 ! regulation of long-day photoperiodism, flowering is_a: GO:2000028 {is_inferred="true"} ! regulation of photoperiodism, flowering @@ -43908,23 +41635,6 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] -id: GO:0048638 ! regulation of developmental growth -is_a: GO:0040008 {is_inferred="true"} ! regulation of growth -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] -id: GO:0048639 ! positive regulation of developmental growth -is_a: GO:0045927 {is_inferred="true"} ! positive regulation of growth -is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process - -[Term] -id: GO:0048640 ! negative regulation of developmental growth -is_a: GO:0045926 {is_inferred="true"} ! negative regulation of growth -is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process - -[Term] id: GO:0048641 ! regulation of skeletal muscle tissue development is_a: GO:0016202 {is_inferred="true"} ! regulation of striated muscle tissue development @@ -44157,10 +41867,6 @@ is_a: GO:0016050 {is_inferred="true"} ! vesicle organization [Term] -id: GO:0048754 ! branching morphogenesis of an epithelial tube -is_a: GO:0035239 {is_inferred="true"} ! tube morphogenesis - -[Term] id: GO:0048759 ! xylem vessel member cell differentiation is_a: GO:1905177 {is_inferred="true"} ! tracheary element differentiation @@ -44336,10 +42042,6 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] -id: GO:0048878 ! chemical homeostasis -is_a: GO:0042592 {is_inferred="true"} ! homeostatic process - -[Term] id: GO:0048882 ! lateral line development is_a: GO:0009888 {is_inferred="true"} ! tissue development @@ -44384,14 +42086,6 @@ is_a: GO:0050427 {is_inferred="true"} ! 3'-phosphoadenosine 5'-phosphosulfate metabolic process [Term] -id: GO:0050432 ! catecholamine secretion -is_a: GO:0051937 {is_inferred="true"} ! catecholamine transport - -[Term] -id: GO:0050433 ! regulation of catecholamine secretion -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] id: GO:0050434 ! positive regulation of viral transcription is_a: GO:0010628 {is_inferred="true"} ! positive regulation of gene expression is_a: GO:0046782 {is_inferred="true"} ! regulation of viral transcription @@ -44509,23 +42203,6 @@ is_a: GO:0050666 {is_inferred="true"} ! regulation of homocysteine metabolic process [Term] -id: GO:0050670 ! regulation of lymphocyte proliferation -is_a: GO:0032944 {is_inferred="true"} ! regulation of mononuclear cell proliferation -is_a: GO:0051249 {is_inferred="true"} ! regulation of lymphocyte activation - -[Term] -id: GO:0050671 ! positive regulation of lymphocyte proliferation -is_a: GO:0032946 {is_inferred="true"} ! positive regulation of mononuclear cell proliferation -is_a: GO:0050670 {is_inferred="true"} ! regulation of lymphocyte proliferation -is_a: GO:0051251 {is_inferred="true"} ! positive regulation of lymphocyte activation - -[Term] -id: GO:0050672 ! negative regulation of lymphocyte proliferation -is_a: GO:0032945 {is_inferred="true"} ! negative regulation of mononuclear cell proliferation -is_a: GO:0050670 {is_inferred="true"} ! regulation of lymphocyte proliferation -is_a: GO:0051250 {is_inferred="true"} ! negative regulation of lymphocyte activation - -[Term] id: GO:0050675 ! regulation of urothelial cell proliferation is_a: GO:0050678 {is_inferred="true"} ! regulation of epithelial cell proliferation @@ -44540,20 +42217,6 @@ is_a: GO:0050679 {is_inferred="true"} ! positive regulation of epithelial cell proliferation [Term] -id: GO:0050678 ! regulation of epithelial cell proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation - -[Term] -id: GO:0050679 ! positive regulation of epithelial cell proliferation -is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation -is_a: GO:0050678 {is_inferred="true"} ! regulation of epithelial cell proliferation - -[Term] -id: GO:0050680 ! negative regulation of epithelial cell proliferation -is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation -is_a: GO:0050678 {is_inferred="true"} ! regulation of epithelial cell proliferation - -[Term] id: GO:0050684 ! regulation of mRNA processing is_a: GO:0010468 {is_inferred="true"} ! regulation of gene expression is_a: GO:1903311 {is_inferred="true"} ! regulation of mRNA metabolic process @@ -44613,17 +42276,6 @@ is_a: GO:0050708 {is_inferred="true"} ! regulation of protein secretion [Term] -id: GO:0050708 ! regulation of protein secretion -is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] -id: GO:0050709 ! negative regulation of protein secretion -is_a: GO:0050708 {is_inferred="true"} ! regulation of protein secretion -is_a: GO:0051224 {is_inferred="true"} ! negative regulation of protein transport -is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell - -[Term] id: GO:0050710 ! negative regulation of cytokine secretion is_a: GO:0001818 {is_inferred="true"} ! negative regulation of cytokine production is_a: GO:0050707 {is_inferred="true"} ! regulation of cytokine secretion @@ -44645,12 +42297,6 @@ is_a: GO:0050711 {is_inferred="true"} ! negative regulation of interleukin-1 secretion [Term] -id: GO:0050714 ! positive regulation of protein secretion -is_a: GO:0050708 {is_inferred="true"} ! regulation of protein secretion -is_a: GO:0051222 {is_inferred="true"} ! positive regulation of protein transport -is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell - -[Term] id: GO:0050715 ! positive regulation of cytokine secretion is_a: GO:0001819 {is_inferred="true"} ! positive regulation of cytokine production is_a: GO:0050707 {is_inferred="true"} ! regulation of cytokine secretion @@ -44706,20 +42352,6 @@ is_a: GO:0050721 {is_inferred="true"} ! regulation of interleukin-1 alpha biosynthetic process [Term] -id: GO:0050727 ! regulation of inflammatory response -is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response - -[Term] -id: GO:0050728 ! negative regulation of inflammatory response -is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response -is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response - -[Term] -id: GO:0050729 ! positive regulation of inflammatory response -is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response -is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response - -[Term] id: GO:0050730 ! regulation of peptidyl-tyrosine phosphorylation is_a: GO:0001932 {is_inferred="true"} ! regulation of protein phosphorylation @@ -44818,20 +42450,6 @@ is_a: GO:0050764 {is_inferred="true"} ! regulation of phagocytosis [Term] -id: GO:0050767 ! regulation of neurogenesis -is_a: GO:0051960 {is_inferred="true"} ! regulation of nervous system development - -[Term] -id: GO:0050768 ! negative regulation of neurogenesis -is_a: GO:0050767 {is_inferred="true"} ! regulation of neurogenesis -is_a: GO:0051961 {is_inferred="true"} ! negative regulation of nervous system development - -[Term] -id: GO:0050769 ! positive regulation of neurogenesis -is_a: GO:0050767 {is_inferred="true"} ! regulation of neurogenesis -is_a: GO:0051962 {is_inferred="true"} ! positive regulation of nervous system development - -[Term] id: GO:0050770 ! regulation of axonogenesis is_a: GO:0010769 {is_inferred="true"} ! regulation of cell morphogenesis involved in differentiation is_a: GO:0010975 {is_inferred="true"} ! regulation of neuron projection development @@ -44865,23 +42483,6 @@ is_a: GO:1900006 {is_inferred="true"} ! positive regulation of dendrite development [Term] -id: GO:0050776 ! regulation of immune response -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] -id: GO:0050777 ! negative regulation of immune response -is_a: GO:0002683 {is_inferred="true"} ! negative regulation of immune system process -is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus -is_a: GO:0050776 {is_inferred="true"} ! regulation of immune response - -[Term] -id: GO:0050778 ! positive regulation of immune response -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus -is_a: GO:0050776 {is_inferred="true"} ! regulation of immune response - -[Term] id: GO:0050783 ! cocaine metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0046448 {is_inferred="true"} ! tropane alkaloid metabolic process @@ -44909,23 +42510,6 @@ is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] -id: GO:0050793 ! regulation of developmental process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0050794 ! regulation of cellular process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0050795 ! regulation of behavior -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0050796 ! regulation of insulin secretion -is_a: GO:0050708 {is_inferred="true"} ! regulation of protein secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] id: GO:0050799 ! cocaine biosynthetic process is_a: GO:0009710 {is_inferred="true"} ! tropane alkaloid biosynthetic process is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process @@ -44932,15 +42516,6 @@ is_a: GO:0050783 {is_inferred="true"} ! cocaine metabolic process [Term] -id: GO:0050801 ! ion homeostasis -is_a: GO:0048878 {is_inferred="true"} ! chemical homeostasis - -[Term] -id: GO:0050802 ! circadian sleep/wake cycle, sleep -is_a: GO:0030431 {is_inferred="true"} ! sleep -is_a: GO:0044708 {is_inferred="true"} ! single-organism behavior - -[Term] id: GO:0050804 ! modulation of synaptic transmission is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling @@ -44971,11 +42546,6 @@ is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] -id: GO:0050810 ! regulation of steroid biosynthetic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process -is_a: GO:0046890 {is_inferred="true"} ! regulation of lipid biosynthetic process - -[Term] id: GO:0050812 ! regulation of acyl-CoA biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process @@ -45000,20 +42570,6 @@ is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] -id: GO:0050818 ! regulation of coagulation -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:0050819 ! negative regulation of coagulation -is_a: GO:0050818 {is_inferred="true"} ! regulation of coagulation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:0050820 ! positive regulation of coagulation -is_a: GO:0050818 {is_inferred="true"} ! regulation of coagulation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:0050824 ! water binding is_a: GO:0005488 {is_inferred="true"} ! binding @@ -45096,55 +42652,6 @@ is_a: GO:0050857 {is_inferred="true"} ! positive regulation of antigen receptor-mediated signaling pathway [Term] -id: GO:0050863 ! regulation of T cell activation -is_a: GO:0051249 {is_inferred="true"} ! regulation of lymphocyte activation -is_a: GO:1903037 {is_inferred="true"} ! regulation of leukocyte cell-cell adhesion - -[Term] -id: GO:0050864 ! regulation of B cell activation -is_a: GO:0051249 {is_inferred="true"} ! regulation of lymphocyte activation - -[Term] -id: GO:0050865 ! regulation of cell activation -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0050866 ! negative regulation of cell activation -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0050865 {is_inferred="true"} ! regulation of cell activation - -[Term] -id: GO:0050867 ! positive regulation of cell activation -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0050865 {is_inferred="true"} ! regulation of cell activation - -[Term] -id: GO:0050868 ! negative regulation of T cell activation -is_a: GO:0050863 {is_inferred="true"} ! regulation of T cell activation -is_a: GO:0051250 {is_inferred="true"} ! negative regulation of lymphocyte activation -is_a: GO:1903038 {is_inferred="true"} ! negative regulation of leukocyte cell-cell adhesion - -[Term] -id: GO:0050869 ! negative regulation of B cell activation -is_a: GO:0050864 {is_inferred="true"} ! regulation of B cell activation -is_a: GO:0051250 {is_inferred="true"} ! negative regulation of lymphocyte activation - -[Term] -id: GO:0050870 ! positive regulation of T cell activation -is_a: GO:0050863 {is_inferred="true"} ! regulation of T cell activation -is_a: GO:0051251 {is_inferred="true"} ! positive regulation of lymphocyte activation -is_a: GO:1903039 {is_inferred="true"} ! positive regulation of leukocyte cell-cell adhesion - -[Term] -id: GO:0050871 ! positive regulation of B cell activation -is_a: GO:0050864 {is_inferred="true"} ! regulation of B cell activation -is_a: GO:0051251 {is_inferred="true"} ! positive regulation of lymphocyte activation - -[Term] -id: GO:0050891 ! multicellular organismal water homeostasis -is_a: GO:0048871 {is_inferred="true"} ! multicellular organismal homeostasis - -[Term] id: GO:0050897 ! cobalt ion binding is_a: GO:0046914 {is_inferred="true"} ! transition metal ion binding @@ -45158,31 +42665,6 @@ is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] -id: GO:0050906 ! detection of stimulus involved in sensory perception -is_a: GO:0051606 {is_inferred="true"} ! detection of stimulus - -[Term] -id: GO:0050907 ! detection of chemical stimulus involved in sensory perception -is_a: GO:0009593 {is_inferred="true"} ! detection of chemical stimulus -is_a: GO:0050906 {is_inferred="true"} ! detection of stimulus involved in sensory perception - -[Term] -id: GO:0050908 ! detection of light stimulus involved in visual perception -is_a: GO:0050962 {is_inferred="true"} ! detection of light stimulus involved in sensory perception - -[Term] -id: GO:0050910 ! detection of mechanical stimulus involved in sensory perception of sound -is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception - -[Term] -id: GO:0050911 ! detection of chemical stimulus involved in sensory perception of smell -is_a: GO:0050907 {is_inferred="true"} ! detection of chemical stimulus involved in sensory perception - -[Term] -id: GO:0050912 ! detection of chemical stimulus involved in sensory perception of taste -is_a: GO:0050907 {is_inferred="true"} ! detection of chemical stimulus involved in sensory perception - -[Term] id: GO:0050920 ! regulation of chemotaxis is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion @@ -45303,41 +42785,6 @@ is_a: GO:0050961 {is_inferred="true"} ! detection of temperature stimulus involved in sensory perception [Term] -id: GO:0050961 ! detection of temperature stimulus involved in sensory perception -is_a: GO:0016048 {is_inferred="true"} ! detection of temperature stimulus -is_a: GO:0050906 {is_inferred="true"} ! detection of stimulus involved in sensory perception - -[Term] -id: GO:0050962 ! detection of light stimulus involved in sensory perception -is_a: GO:0009583 {is_inferred="true"} ! detection of light stimulus -is_a: GO:0050906 {is_inferred="true"} ! detection of stimulus involved in sensory perception - -[Term] -id: GO:0050963 ! detection of electrical stimulus involved in sensory perception -is_a: GO:0050906 {is_inferred="true"} ! detection of stimulus involved in sensory perception -is_a: GO:0050981 {is_inferred="true"} ! detection of electrical stimulus - -[Term] -id: GO:0050964 ! detection of electrical stimulus involved in electroception -is_a: GO:0050963 {is_inferred="true"} ! detection of electrical stimulus involved in sensory perception - -[Term] -id: GO:0050965 ! detection of temperature stimulus involved in sensory perception of pain -is_a: GO:0050961 {is_inferred="true"} ! detection of temperature stimulus involved in sensory perception - -[Term] -id: GO:0050966 ! detection of mechanical stimulus involved in sensory perception of pain -is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception - -[Term] -id: GO:0050967 ! detection of electrical stimulus involved in sensory perception of pain -is_a: GO:0050963 {is_inferred="true"} ! detection of electrical stimulus involved in sensory perception - -[Term] -id: GO:0050968 ! detection of chemical stimulus involved in sensory perception of pain -is_a: GO:0050907 {is_inferred="true"} ! detection of chemical stimulus involved in sensory perception - -[Term] id: GO:0050969 ! detection of chemical stimulus involved in magnetoreception is_a: GO:0050907 {is_inferred="true"} ! detection of chemical stimulus involved in sensory perception @@ -45350,19 +42797,6 @@ is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception [Term] -id: GO:0050973 ! detection of mechanical stimulus involved in equilibrioception -is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception - -[Term] -id: GO:0050974 ! detection of mechanical stimulus involved in sensory perception -is_a: GO:0050906 {is_inferred="true"} ! detection of stimulus involved in sensory perception -is_a: GO:0050982 {is_inferred="true"} ! detection of mechanical stimulus - -[Term] -id: GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch -is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception - -[Term] id: GO:0050980 ! detection of light stimulus involved in magnetoreception is_a: GO:0050962 {is_inferred="true"} ! detection of light stimulus involved in sensory perception @@ -45519,34 +42953,6 @@ is_a: GO:0051043 {is_inferred="true"} ! regulation of membrane protein ectodomain proteolysis [Term] -id: GO:0051046 ! regulation of secretion -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0051047 ! positive regulation of secretion -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport - -[Term] -id: GO:0051048 ! negative regulation of secretion -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport - -[Term] -id: GO:0051049 ! regulation of transport -is_a: GO:0032879 {is_inferred="true"} ! regulation of localization - -[Term] -id: GO:0051050 ! positive regulation of transport -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0051051 ! negative regulation of transport -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] id: GO:0051052 ! regulation of DNA metabolic process is_a: GO:0019219 {is_inferred="true"} ! regulation of nucleobase-containing compound metabolic process is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process @@ -45564,12 +42970,6 @@ is_a: GO:0051052 {is_inferred="true"} ! regulation of DNA metabolic process [Term] -id: GO:0051055 ! negative regulation of lipid biosynthetic process -is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process -is_a: GO:0045833 {is_inferred="true"} ! negative regulation of lipid metabolic process -is_a: GO:0046890 {is_inferred="true"} ! regulation of lipid biosynthetic process - -[Term] id: GO:0051056 ! regulation of small GTPase mediated signal transduction is_a: GO:1902531 {is_inferred="true"} ! regulation of intracellular signal transduction @@ -45643,16 +43043,6 @@ is_a: GO:0051090 {is_inferred="true"} ! regulation of sequence-specific DNA binding transcription factor activity [Term] -id: GO:0051093 ! negative regulation of developmental process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] -id: GO:0051094 ! positive regulation of developmental process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] id: GO:0051095 ! regulation of helicase activity is_a: GO:0051336 {is_inferred="true"} ! regulation of hydrolase activity @@ -45734,20 +43124,6 @@ is_a: GO:0051125 {is_inferred="true"} ! regulation of actin nucleation [Term] -id: GO:0051128 ! regulation of cellular component organization -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0051129 ! negative regulation of cellular component organization -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization - -[Term] -id: GO:0051130 ! positive regulation of cellular component organization -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization - -[Term] id: GO:0051133 ! regulation of NK T cell activation is_a: GO:0046634 {is_inferred="true"} ! regulation of alpha-beta T cell activation @@ -45905,20 +43281,6 @@ is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] -id: GO:0051171 ! regulation of nitrogen compound metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] -id: GO:0051172 ! negative regulation of nitrogen compound metabolic process -is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process - -[Term] -id: GO:0051173 ! positive regulation of nitrogen compound metabolic process -is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process - -[Term] id: GO:0051174 ! regulation of phosphorus metabolic process is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process @@ -46020,23 +43382,6 @@ is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell [Term] -id: GO:0051222 ! positive regulation of protein transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport -is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport -is_a: GO:1904951 {is_inferred="true"} ! positive regulation of establishment of protein localization - -[Term] -id: GO:0051223 ! regulation of protein transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport -is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization - -[Term] -id: GO:0051224 ! negative regulation of protein transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport -is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport -is_a: GO:1904950 {is_inferred="true"} ! negative regulation of establishment of protein localization - -[Term] id: GO:0051228 ! mitotic spindle disassembly is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:0051230 {is_inferred="true"} ! spindle disassembly @@ -46057,20 +43402,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0051239 ! regulation of multicellular organismal process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0051240 ! positive regulation of multicellular organismal process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:0051241 ! negative regulation of multicellular organismal process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] id: GO:0051245 ! negative regulation of cellular defense response is_a: GO:0010185 {is_inferred="true"} ! regulation of cellular defense response is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response @@ -46091,20 +43422,6 @@ is_a: GO:0051246 {is_inferred="true"} ! regulation of protein metabolic process [Term] -id: GO:0051249 ! regulation of lymphocyte activation -is_a: GO:0002694 {is_inferred="true"} ! regulation of leukocyte activation - -[Term] -id: GO:0051250 ! negative regulation of lymphocyte activation -is_a: GO:0002695 {is_inferred="true"} ! negative regulation of leukocyte activation -is_a: GO:0051249 {is_inferred="true"} ! regulation of lymphocyte activation - -[Term] -id: GO:0051251 ! positive regulation of lymphocyte activation -is_a: GO:0002696 {is_inferred="true"} ! positive regulation of leukocyte activation -is_a: GO:0051249 {is_inferred="true"} ! regulation of lymphocyte activation - -[Term] id: GO:0051252 ! regulation of RNA metabolic process is_a: GO:0019219 {is_inferred="true"} ! regulation of nucleobase-containing compound metabolic process is_a: GO:0060255 {is_inferred="true"} ! regulation of macromolecule metabolic process @@ -46137,20 +43454,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0051270 ! regulation of cellular component movement -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] -id: GO:0051271 ! negative regulation of cellular component movement -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051270 {is_inferred="true"} ! regulation of cellular component movement - -[Term] -id: GO:0051272 ! positive regulation of cellular component movement -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051270 {is_inferred="true"} ! regulation of cellular component movement - -[Term] id: GO:0051274 ! beta-glucan biosynthetic process is_a: GO:0009250 {is_inferred="true"} ! glucan biosynthetic process is_a: GO:0051273 {is_inferred="true"} ! beta-glucan metabolic process @@ -46241,10 +43544,6 @@ is_a: GO:0031023 {is_inferred="true"} ! microtubule organizing center organization [Term] -id: GO:0051302 ! regulation of cell division -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] id: GO:0051303 ! establishment of chromosome localization is_a: GO:0050000 {is_inferred="true"} ! chromosome localization @@ -46286,10 +43585,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0051321 ! meiotic cell cycle -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0051327 ! meiotic M phase is_a: GO:0098762 {is_inferred="true"} ! meiotic cell cycle phase @@ -46404,14 +43699,6 @@ is_a: GO:0051341 {is_inferred="true"} ! regulation of oxidoreductase activity [Term] -id: GO:0051355 ! proprioception involved in equilibrioception -is_a: GO:0019230 {is_inferred="true"} ! proprioception - -[Term] -id: GO:0051356 ! visual perception involved in equilibrioception -is_a: GO:0007601 {is_inferred="true"} ! visual perception - -[Term] id: GO:0051378 ! serotonin binding is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding @@ -46567,23 +43854,6 @@ is_a: GO:0051438 {is_inferred="true"} ! regulation of ubiquitin-protein transferase activity [Term] -id: GO:0051445 ! regulation of meiotic cell cycle -is_a: GO:0051726 {is_inferred="true"} ! regulation of cell cycle -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] -id: GO:0051446 ! positive regulation of meiotic cell cycle -is_a: GO:0045787 {is_inferred="true"} ! positive regulation of cell cycle -is_a: GO:0051445 {is_inferred="true"} ! regulation of meiotic cell cycle -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process - -[Term] -id: GO:0051447 ! negative regulation of meiotic cell cycle -is_a: GO:0045786 {is_inferred="true"} ! negative regulation of cell cycle -is_a: GO:0051445 {is_inferred="true"} ! regulation of meiotic cell cycle -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process - -[Term] id: GO:0051452 ! intracellular pH reduction is_a: GO:0045851 {is_inferred="true"} ! pH reduction @@ -47245,10 +44515,6 @@ is_a: GO:0051644 {is_inferred="true"} ! plastid localization [Term] -id: GO:0051674 ! localization of cell -is_a: GO:0051179 {is_inferred="true"} ! localization - -[Term] id: GO:0051677 ! pullulan biosynthetic process is_a: GO:0009250 {is_inferred="true"} ! glucan biosynthetic process is_a: GO:0051676 {is_inferred="true"} ! pullulan metabolic process @@ -47350,10 +44616,6 @@ is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process [Term] -id: GO:0051726 ! regulation of cell cycle -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process - -[Term] id: GO:0051738 ! xanthophyll binding is_a: GO:0019840 {is_inferred="true"} ! isoprenoid binding @@ -47398,30 +44660,6 @@ is_a: GO:0051769 {is_inferred="true"} ! regulation of nitric-oxide synthase biosynthetic process [Term] -id: GO:0051781 ! positive regulation of cell division -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division - -[Term] -id: GO:0051782 ! negative regulation of cell division -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division - -[Term] -id: GO:0051783 ! regulation of nuclear division -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization - -[Term] -id: GO:0051784 ! negative regulation of nuclear division -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization -is_a: GO:0051783 {is_inferred="true"} ! regulation of nuclear division - -[Term] -id: GO:0051785 ! positive regulation of nuclear division -is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization -is_a: GO:0051783 {is_inferred="true"} ! regulation of nuclear division - -[Term] id: GO:0051790 ! short-chain fatty acid biosynthetic process is_a: GO:0006633 {is_inferred="true"} ! fatty acid biosynthetic process is_a: GO:0046459 {is_inferred="true"} ! short-chain fatty acid metabolic process @@ -47657,14 +44895,6 @@ is_a: GO:0051924 {is_inferred="true"} ! regulation of calcium ion transport [Term] -id: GO:0051930 ! regulation of sensory perception of pain -is_a: GO:0051931 {is_inferred="true"} ! regulation of sensory perception - -[Term] -id: GO:0051931 ! regulation of sensory perception -is_a: GO:0031644 {is_inferred="true"} ! regulation of neurological system process - -[Term] id: GO:0051933 ! amino acid neurotransmitter reuptake is_a: GO:0098810 {is_inferred="true"} ! neurotransmitter reuptake is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell @@ -47685,11 +44915,6 @@ is_a: GO:0051939 {is_inferred="true"} ! gamma-aminobutyric acid import [Term] -id: GO:0051937 ! catecholamine transport -is_a: GO:0015844 {is_inferred="true"} ! monoamine transport -is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport - -[Term] id: GO:0051938 ! L-glutamate import is_a: GO:0015813 {is_inferred="true"} ! L-glutamate transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import @@ -47764,20 +44989,6 @@ is_a: GO:1900922 {is_inferred="true"} ! positive regulation of L-glutamate import [Term] -id: GO:0051952 ! regulation of amine transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] -id: GO:0051953 ! negative regulation of amine transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport -is_a: GO:0051952 {is_inferred="true"} ! regulation of amine transport - -[Term] -id: GO:0051954 ! positive regulation of amine transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport -is_a: GO:0051952 {is_inferred="true"} ! regulation of amine transport - -[Term] id: GO:0051955 ! regulation of amino acid transport is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport @@ -47800,22 +45011,6 @@ is_a: GO:0042886 {is_inferred="true"} ! amide transport [Term] -id: GO:0051960 ! regulation of nervous system development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:0051961 ! negative regulation of nervous system development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:0051960 {is_inferred="true"} ! regulation of nervous system development - -[Term] -id: GO:0051962 ! positive regulation of nervous system development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:0051960 {is_inferred="true"} ! regulation of nervous system development - -[Term] id: GO:0051963 ! regulation of synapse assembly is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization @@ -48179,13 +45374,6 @@ is_a: GO:0052783 {is_inferred="true"} ! reuteran metabolic process [Term] -id: GO:0052803 ! imidazole-containing compound metabolic process -is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:0052805 ! imidazole-containing compound catabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process @@ -48325,15 +45513,6 @@ is_a: GO:0072505 {is_inferred="true"} ! divalent inorganic anion homeostasis [Term] -id: GO:0055065 ! metal ion homeostasis -is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis - -[Term] -id: GO:0055067 ! monovalent inorganic cation homeostasis -is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis -is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis - -[Term] id: GO:0055068 ! cobalt ion homeostasis is_a: GO:0055076 {is_inferred="true"} ! transition metal ion homeostasis @@ -48358,10 +45537,6 @@ is_a: GO:0055076 {is_inferred="true"} ! transition metal ion homeostasis [Term] -id: GO:0055080 ! cation homeostasis -is_a: GO:0050801 {is_inferred="true"} ! ion homeostasis - -[Term] id: GO:0055081 ! anion homeostasis is_a: GO:0050801 {is_inferred="true"} ! ion homeostasis @@ -48429,17 +45604,6 @@ is_a: GO:0090504 {is_inferred="true"} ! epiboly [Term] -id: GO:0055117 ! regulation of cardiac muscle contraction -is_a: GO:0006942 {is_inferred="true"} ! regulation of striated muscle contraction -is_a: GO:0008016 {is_inferred="true"} ! regulation of heart contraction - -[Term] -id: GO:0055118 ! negative regulation of cardiac muscle contraction -is_a: GO:0045822 {is_inferred="true"} ! negative regulation of heart contraction -is_a: GO:0045988 {is_inferred="true"} ! negative regulation of striated muscle contraction -is_a: GO:0055117 {is_inferred="true"} ! regulation of cardiac muscle contraction - -[Term] id: GO:0055129 ! L-proline biosynthetic process is_a: GO:0006561 {is_inferred="true"} ! proline biosynthetic process @@ -48538,14 +45702,6 @@ is_a: GO:0045104 {is_inferred="true"} ! intermediate filament cytoskeleton organization [Term] -id: GO:0060054 ! positive regulation of epithelial cell proliferation involved in wound healing -is_a: GO:0050679 {is_inferred="true"} ! positive regulation of epithelial cell proliferation - -[Term] -id: GO:0060055 ! angiogenesis involved in wound healing -is_a: GO:0001525 {is_inferred="true"} ! angiogenesis - -[Term] id: GO:0060057 ! apoptotic process involved in mammary gland involution is_a: GO:0060561 {is_inferred="true"} ! apoptotic process involved in morphogenesis @@ -48638,10 +45794,6 @@ is_a: GO:0002068 {is_inferred="true"} ! glandular epithelial cell development [Term] -id: GO:0060136 ! embryonic process involved in female pregnancy -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0060142 ! regulation of syncytium formation by plasma membrane fusion is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis @@ -48883,10 +46035,6 @@ is_a: GO:1903059 {is_inferred="true"} ! regulation of protein lipidation [Term] -id: GO:0060255 ! regulation of macromolecule metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] id: GO:0060256 ! regulation of flocculation is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process @@ -48901,10 +46049,6 @@ is_a: GO:0045926 {is_inferred="true"} ! negative regulation of growth [Term] -id: GO:0060259 ! regulation of feeding behavior -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] id: GO:0060260 ! regulation of transcription initiation from RNA polymerase II promoter is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter is_a: GO:2000142 {is_inferred="true"} ! regulation of DNA-templated transcription, initiation @@ -49003,10 +46147,6 @@ is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] -id: GO:0060284 ! regulation of cell development -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation - -[Term] id: GO:0060287 ! epithelial cilium movement involved in determination of left/right asymmetry is_a: GO:0003351 {is_inferred="true"} ! epithelial cilium movement @@ -49177,18 +46317,6 @@ is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] -id: GO:0060348 ! bone development -is_a: GO:0048513 {is_inferred="true"} ! animal organ development - -[Term] -id: GO:0060349 ! bone morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis - -[Term] -id: GO:0060351 ! cartilage development involved in endochondral bone morphogenesis -is_a: GO:0051216 {is_inferred="true"} ! cartilage development - -[Term] id: GO:0060353 ! regulation of cell adhesion molecule production is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process @@ -49337,24 +46465,6 @@ is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell [Term] -id: GO:0060405 ! regulation of penile erection -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] -id: GO:0060406 ! positive regulation of penile erection -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0060405 {is_inferred="true"} ! regulation of penile erection -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process - -[Term] -id: GO:0060407 ! negative regulation of penile erection -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process -is_a: GO:0060405 {is_inferred="true"} ! regulation of penile erection -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process - -[Term] id: GO:0060408 ! regulation of acetylcholine metabolic process is_a: GO:0001505 {is_inferred="true"} ! regulation of neurotransmitter levels @@ -49425,39 +46535,6 @@ is_a: GO:0060457 {is_inferred="true"} ! negative regulation of digestive system process [Term] -id: GO:0060452 ! positive regulation of cardiac muscle contraction -is_a: GO:0045823 {is_inferred="true"} ! positive regulation of heart contraction -is_a: GO:0045989 {is_inferred="true"} ! positive regulation of striated muscle contraction -is_a: GO:0055117 {is_inferred="true"} ! regulation of cardiac muscle contraction - -[Term] -id: GO:0060453 ! regulation of gastric acid secretion -is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion - -[Term] -id: GO:0060454 ! positive regulation of gastric acid secretion -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:0060453 {is_inferred="true"} ! regulation of gastric acid secretion -is_a: GO:0060456 {is_inferred="true"} ! positive regulation of digestive system process - -[Term] -id: GO:0060455 ! negative regulation of gastric acid secretion -is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:0060453 {is_inferred="true"} ! regulation of gastric acid secretion -is_a: GO:0060457 {is_inferred="true"} ! negative regulation of digestive system process - -[Term] -id: GO:0060456 ! positive regulation of digestive system process -is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] -id: GO:0060457 ! negative regulation of digestive system process -is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] id: GO:0060466 ! activation of meiosis involved in egg activation is_a: GO:0022414 {is_inferred="true"} ! reproductive process is_a: GO:0090427 {is_inferred="true"} ! activation of meiosis @@ -49493,11 +46570,6 @@ is_a: GO:1905516 {is_inferred="true"} ! positive regulation of fertilization [Term] -id: GO:0060474 ! positive regulation of flagellated sperm motility involved in capacitation -is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:1902093 {is_inferred="true"} ! positive regulation of flagellated sperm motility - -[Term] id: GO:0060475 ! positive regulation of actin filament polymerization involved in acrosome reaction is_a: GO:0030838 {is_inferred="true"} ! positive regulation of actin filament polymerization is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process @@ -49726,10 +46798,6 @@ is_a: GO:1902932 {is_inferred="true"} ! positive regulation of alcohol biosynthetic process [Term] -id: GO:0060560 ! developmental growth involved in morphogenesis -is_a: GO:0048589 {is_inferred="true"} ! developmental growth - -[Term] id: GO:0060563 ! neuroepithelial cell differentiation is_a: GO:0002065 {is_inferred="true"} ! columnar/cuboidal epithelial cell differentiation @@ -49879,10 +46947,6 @@ is_a: GO:0060625 {is_inferred="true"} ! regulation of protein deneddylation [Term] -id: GO:0060627 ! regulation of vesicle-mediated transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] id: GO:0060628 ! regulation of ER to Golgi vesicle-mediated transport is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport @@ -50055,11 +47119,6 @@ is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] -id: GO:0060688 ! regulation of morphogenesis of a branching structure -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] id: GO:0060689 ! cell differentiation involved in salivary gland development is_a: GO:0030154 {is_inferred="true"} ! cell differentiation @@ -50333,10 +47392,6 @@ is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] -id: GO:0060764 ! cell-cell signaling involved in mammary gland development -is_a: GO:0007267 {is_inferred="true"} ! cell-cell signaling - -[Term] id: GO:0060765 ! regulation of androgen receptor signaling pathway is_a: GO:0033143 {is_inferred="true"} ! regulation of intracellular steroid hormone receptor signaling pathway @@ -50827,34 +47882,10 @@ is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation [Term] -id: GO:0061024 ! membrane organization -is_a: GO:0016043 {is_inferred="true"} ! cellular component organization - -[Term] -id: GO:0061035 ! regulation of cartilage development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:0061036 ! positive regulation of cartilage development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:0061035 {is_inferred="true"} ! regulation of cartilage development - -[Term] -id: GO:0061037 ! negative regulation of cartilage development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:0061035 {is_inferred="true"} ! regulation of cartilage development - -[Term] id: GO:0061038 ! uterus morphogenesis is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0061041 ! regulation of wound healing -is_a: GO:1903034 {is_inferred="true"} ! regulation of response to wounding - -[Term] id: GO:0061043 ! regulation of vascular wound healing is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing @@ -50865,11 +47896,6 @@ is_a: GO:0061043 {is_inferred="true"} ! regulation of vascular wound healing [Term] -id: GO:0061045 ! negative regulation of wound healing -is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing -is_a: GO:1903035 {is_inferred="true"} ! negative regulation of response to wounding - -[Term] id: GO:0061046 ! regulation of branching involved in lung morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium @@ -50935,20 +47961,6 @@ is_a: GO:1900425 {is_inferred="true"} ! negative regulation of defense response to bacterium [Term] -id: GO:0061062 ! regulation of nematode larval development -is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development - -[Term] -id: GO:0061063 ! positive regulation of nematode larval development -is_a: GO:0048582 {is_inferred="true"} ! positive regulation of post-embryonic development -is_a: GO:0061062 {is_inferred="true"} ! regulation of nematode larval development - -[Term] -id: GO:0061064 ! negative regulation of nematode larval development -is_a: GO:0048581 {is_inferred="true"} ! negative regulation of post-embryonic development -is_a: GO:0061062 {is_inferred="true"} ! regulation of nematode larval development - -[Term] id: GO:0061065 ! regulation of dauer larval development is_a: GO:0061062 {is_inferred="true"} ! regulation of nematode larval development @@ -51205,17 +48217,6 @@ is_a: GO:0061178 {is_inferred="true"} ! regulation of insulin secretion involved in cellular response to glucose stimulus [Term] -id: GO:0061181 ! regulation of chondrocyte development -is_a: GO:0032330 {is_inferred="true"} ! regulation of chondrocyte differentiation -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development - -[Term] -id: GO:0061182 ! negative regulation of chondrocyte development -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:0032331 {is_inferred="true"} ! negative regulation of chondrocyte differentiation -is_a: GO:0061181 {is_inferred="true"} ! regulation of chondrocyte development - -[Term] id: GO:0061183 ! regulation of dermatome development is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development @@ -52046,10 +49047,6 @@ is_a: GO:0065003 {is_inferred="true"} ! macromolecular complex assembly [Term] -id: GO:0065009 ! regulation of molecular function -is_a: GO:0065007 {is_inferred="true"} ! biological regulation - -[Term] id: GO:0070013 ! intracellular organelle lumen is_a: GO:0043233 {is_inferred="true"} ! organelle lumen is_a: GO:0044424 {is_inferred="true"} ! intracellular part @@ -52132,20 +49129,6 @@ is_a: GO:0015031 {is_inferred="true"} ! protein transport [Term] -id: GO:0070092 ! regulation of glucagon secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] -id: GO:0070093 ! negative regulation of glucagon secretion -is_a: GO:0070092 {is_inferred="true"} ! regulation of glucagon secretion -is_a: GO:0090278 {is_inferred="true"} ! negative regulation of peptide hormone secretion - -[Term] -id: GO:0070094 ! positive regulation of glucagon secretion -is_a: GO:0070092 {is_inferred="true"} ! regulation of glucagon secretion -is_a: GO:0090277 {is_inferred="true"} ! positive regulation of peptide hormone secretion - -[Term] id: GO:0070095 ! fructose-6-phosphate binding is_a: GO:0043168 {is_inferred="true"} ! anion binding @@ -52352,20 +49335,6 @@ is_a: GO:0070163 {is_inferred="true"} ! regulation of adiponectin secretion [Term] -id: GO:0070167 ! regulation of biomineral tissue development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:0070168 ! negative regulation of biomineral tissue development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0070167 {is_inferred="true"} ! regulation of biomineral tissue development - -[Term] -id: GO:0070169 ! positive regulation of biomineral tissue development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0070167 {is_inferred="true"} ! regulation of biomineral tissue development - -[Term] id: GO:0070170 ! regulation of tooth mineralization is_a: GO:0042481 {is_inferred="true"} ! regulation of odontogenesis is_a: GO:0070167 {is_inferred="true"} ! regulation of biomineral tissue development @@ -52441,10 +49410,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0070201 ! regulation of establishment of protein localization -is_a: GO:0032880 {is_inferred="true"} ! regulation of protein localization - -[Term] id: GO:0070202 ! regulation of establishment of protein localization to chromosome is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization @@ -52560,24 +49525,6 @@ is_a: GO:0070247 {is_inferred="true"} ! regulation of natural killer cell apoptotic process [Term] -id: GO:0070255 ! regulation of mucus secretion -is_a: GO:0050878 {is_inferred="true"} ! regulation of body fluid levels -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:0070256 ! negative regulation of mucus secretion -is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:0070255 {is_inferred="true"} ! regulation of mucus secretion - -[Term] -id: GO:0070257 ! positive regulation of mucus secretion -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:0070255 {is_inferred="true"} ! regulation of mucus secretion - -[Term] id: GO:0070264 ! transcription factor TFIIIE complex is_a: GO:0044451 {is_inferred="true"} ! nucleoplasm part @@ -53022,10 +49969,6 @@ is_a: GO:0070486 {is_inferred="true"} ! leukocyte aggregation [Term] -id: GO:0070489 ! T cell aggregation -is_a: GO:0045321 {is_inferred="true"} ! leukocyte activation - -[Term] id: GO:0070492 ! oligosaccharide binding is_a: GO:0030246 {is_inferred="true"} ! carbohydrate binding @@ -53130,6 +50073,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0070560 ! protein secretion by platelet +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:0070562 ! regulation of vitamin D receptor signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels @@ -53372,20 +50319,6 @@ is_a: GO:0070656 {is_inferred="true"} ! mechanoreceptor differentiation involved in mechanosensory epithelium regeneration [Term] -id: GO:0070663 ! regulation of leukocyte proliferation -is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation - -[Term] -id: GO:0070664 ! negative regulation of leukocyte proliferation -is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation -is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation - -[Term] -id: GO:0070665 ! positive regulation of leukocyte proliferation -is_a: GO:0008284 {is_inferred="true"} ! positive regulation of cell proliferation -is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation - -[Term] id: GO:0070666 ! regulation of mast cell proliferation is_a: GO:0070663 {is_inferred="true"} ! regulation of leukocyte proliferation @@ -53732,26 +50665,6 @@ is_a: GO:0030001 {is_inferred="true"} ! metal ion transport [Term] -id: GO:0070857 ! regulation of bile acid biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0050810 {is_inferred="true"} ! regulation of steroid biosynthetic process -is_a: GO:1904251 {is_inferred="true"} ! regulation of bile acid metabolic process - -[Term] -id: GO:0070858 ! negative regulation of bile acid biosynthetic process -is_a: GO:0010894 {is_inferred="true"} ! negative regulation of steroid biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0070857 {is_inferred="true"} ! regulation of bile acid biosynthetic process -is_a: GO:1904252 {is_inferred="true"} ! negative regulation of bile acid metabolic process - -[Term] -id: GO:0070859 ! positive regulation of bile acid biosynthetic process -is_a: GO:0010893 {is_inferred="true"} ! positive regulation of steroid biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0070857 {is_inferred="true"} ! regulation of bile acid biosynthetic process -is_a: GO:1904253 {is_inferred="true"} ! positive regulation of bile acid metabolic process - -[Term] id: GO:0070861 ! regulation of protein exit from endoplasmic reticulum is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport @@ -53790,22 +50703,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0070873 ! regulation of glycogen metabolic process -is_a: GO:0032881 {is_inferred="true"} ! regulation of polysaccharide metabolic process -is_a: GO:0043467 {is_inferred="true"} ! regulation of generation of precursor metabolites and energy - -[Term] -id: GO:0070874 ! negative regulation of glycogen metabolic process -is_a: GO:0010605 {is_inferred="true"} ! negative regulation of macromolecule metabolic process -is_a: GO:0010677 {is_inferred="true"} ! negative regulation of cellular carbohydrate metabolic process -is_a: GO:0070873 {is_inferred="true"} ! regulation of glycogen metabolic process - -[Term] -id: GO:0070875 ! positive regulation of glycogen metabolic process -is_a: GO:0010604 {is_inferred="true"} ! positive regulation of macromolecule metabolic process -is_a: GO:0070873 {is_inferred="true"} ! regulation of glycogen metabolic process - -[Term] id: GO:0070881 ! regulation of proline transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport @@ -55561,10 +52458,6 @@ is_a: GO:0071591 {is_inferred="true"} ! nicotinic acid riboside metabolic process [Term] -id: GO:0071593 ! lymphocyte aggregation -is_a: GO:0070486 {is_inferred="true"} ! leukocyte aggregation - -[Term] id: GO:0071598 ! neuronal ribonucleoprotein granule is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -55816,18 +52709,6 @@ is_a: GO:0046825 {is_inferred="true"} ! regulation of protein export from nucleus [Term] -id: GO:0071702 ! organic substance transport -is_a: GO:0006810 {is_inferred="true"} ! transport - -[Term] -id: GO:0071704 ! organic substance metabolic process -is_a: GO:0008152 {is_inferred="true"} ! metabolic process - -[Term] -id: GO:0071705 ! nitrogen compound transport -is_a: GO:0006810 {is_inferred="true"} ! transport - -[Term] id: GO:0071715 ! icosanoid transport is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport is_a: GO:1901571 {is_inferred="true"} ! fatty acid derivative transport @@ -56596,11 +53477,6 @@ is_a: GO:0072201 {is_inferred="true"} ! negative regulation of mesenchymal cell proliferation [Term] -id: GO:0072201 ! negative regulation of mesenchymal cell proliferation -is_a: GO:0008285 {is_inferred="true"} ! negative regulation of cell proliferation -is_a: GO:0010464 {is_inferred="true"} ! regulation of mesenchymal cell proliferation - -[Term] id: GO:0072202 ! cell differentiation involved in metanephros development is_a: GO:0061005 {is_inferred="true"} ! cell differentiation involved in kidney development @@ -56822,11 +53698,6 @@ is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] -id: GO:0072330 ! monocarboxylic acid biosynthetic process -is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process -is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process - -[Term] id: GO:0072334 ! UDP-galactose transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport @@ -57186,10 +54057,6 @@ is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis [Term] -id: GO:0072507 ! divalent inorganic cation homeostasis -is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis - -[Term] id: GO:0072508 ! trivalent inorganic cation homeostasis is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis @@ -58381,10 +55248,6 @@ is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] -id: GO:0080090 ! regulation of primary metabolic process -is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process - -[Term] id: GO:0080091 ! regulation of raffinose metabolic process is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process @@ -58455,10 +55318,6 @@ is_a: GO:1905328 {is_inferred="true"} ! plant septum development [Term] -id: GO:0080134 ! regulation of response to stress -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus - -[Term] id: GO:0080135 ! regulation of cellular response to stress is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:0080134 {is_inferred="true"} ! regulation of response to stress @@ -59074,7 +55933,6 @@ [Term] id: GO:0090068 ! positive regulation of cell cycle process is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process -is_a: GO:0045787 {is_inferred="true"} ! positive regulation of cell cycle [Term] id: GO:0090069 ! regulation of ribosome biogenesis @@ -59131,10 +55989,6 @@ is_a: GO:1903321 {is_inferred="true"} ! negative regulation of protein modification by small protein conjugation or removal [Term] -id: GO:0090087 ! regulation of peptide transport -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport - -[Term] id: GO:0090088 ! regulation of oligopeptide transport is_a: GO:0090087 {is_inferred="true"} ! regulation of peptide transport @@ -59390,11 +56244,6 @@ is_a: GO:0060629 {is_inferred="true"} ! regulation of homologous chromosome segregation [Term] -id: GO:0090174 ! organelle membrane fusion -is_a: GO:0048284 {is_inferred="true"} ! organelle fusion -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization - -[Term] id: GO:0090175 ! regulation of establishment of planar polarity is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium @@ -59747,10 +56596,6 @@ is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] -id: GO:0090257 ! regulation of muscle system process -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] id: GO:0090258 ! negative regulation of mitochondrial fission is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization is_a: GO:0090140 {is_inferred="true"} ! regulation of mitochondrial fission @@ -59814,37 +56659,6 @@ is_a: GO:0090270 {is_inferred="true"} ! regulation of fibroblast growth factor production [Term] -id: GO:0090273 ! regulation of somatostatin secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] -id: GO:0090274 ! positive regulation of somatostatin secretion -is_a: GO:0090273 {is_inferred="true"} ! regulation of somatostatin secretion -is_a: GO:0090277 {is_inferred="true"} ! positive regulation of peptide hormone secretion - -[Term] -id: GO:0090275 ! negative regulation of somatostatin secretion -is_a: GO:0090273 {is_inferred="true"} ! regulation of somatostatin secretion -is_a: GO:0090278 {is_inferred="true"} ! negative regulation of peptide hormone secretion - -[Term] -id: GO:0090276 ! regulation of peptide hormone secretion -is_a: GO:0002791 {is_inferred="true"} ! regulation of peptide secretion -is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion - -[Term] -id: GO:0090277 ! positive regulation of peptide hormone secretion -is_a: GO:0002793 {is_inferred="true"} ! positive regulation of peptide secretion -is_a: GO:0046887 {is_inferred="true"} ! positive regulation of hormone secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] -id: GO:0090278 ! negative regulation of peptide hormone secretion -is_a: GO:0002792 {is_inferred="true"} ! negative regulation of peptide secretion -is_a: GO:0046888 {is_inferred="true"} ! negative regulation of hormone secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] id: GO:0090279 ! regulation of calcium ion import is_a: GO:0051924 {is_inferred="true"} ! regulation of calcium ion transport @@ -59945,11 +56759,6 @@ is_a: GO:0090299 {is_inferred="true"} ! regulation of neural crest formation [Term] -id: GO:0090303 ! positive regulation of wound healing -is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing -is_a: GO:1903036 {is_inferred="true"} ! positive regulation of response to wounding - -[Term] id: GO:0090304 ! nucleic acid metabolic process is_a: GO:0006139 {is_inferred="true"} ! nucleobase-containing compound metabolic process is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process @@ -60057,29 +56866,6 @@ is_a: GO:1903579 {is_inferred="true"} ! negative regulation of ATP metabolic process [Term] -id: GO:0090325 ! regulation of locomotion involved in locomotory behavior -is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] -id: GO:0090326 ! positive regulation of locomotion involved in locomotory behavior -is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion -is_a: GO:0048520 {is_inferred="true"} ! positive regulation of behavior -is_a: GO:0090325 {is_inferred="true"} ! regulation of locomotion involved in locomotory behavior - -[Term] -id: GO:0090327 ! negative regulation of locomotion involved in locomotory behavior -is_a: GO:0040013 {is_inferred="true"} ! negative regulation of locomotion -is_a: GO:0048521 {is_inferred="true"} ! negative regulation of behavior -is_a: GO:0090325 {is_inferred="true"} ! regulation of locomotion involved in locomotory behavior - -[Term] -id: GO:0090328 ! regulation of olfactory learning -is_a: GO:0031644 {is_inferred="true"} ! regulation of neurological system process -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] id: GO:0090329 ! regulation of DNA-dependent DNA replication is_a: GO:0006275 {is_inferred="true"} ! regulation of DNA replication @@ -60775,10 +57561,6 @@ is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] -id: GO:0097164 ! ammonium ion metabolic process -is_a: GO:0006807 {is_inferred="true"} ! nitrogen compound metabolic process - -[Term] id: GO:0097170 ! ADP-L-glycero-beta-D-manno-heptose metabolic process is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process @@ -61280,10 +58062,6 @@ is_a: GO:0043229 {is_inferred="true"} ! intracellular organelle [Term] -id: GO:0097733 ! photoreceptor cell cilium -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:0097740 ! paraflagellar rod is_a: GO:0044441 {is_inferred="true"} ! ciliary part @@ -61566,10 +58344,6 @@ is_a: GO:0044425 {is_inferred="true"} ! membrane part [Term] -id: GO:0098590 ! plasma membrane region -is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part - -[Term] id: GO:0098592 ! cytoplasmic side of apical plasma membrane is_a: GO:0009898 {is_inferred="true"} ! cytoplasmic side of plasma membrane @@ -61579,10 +58353,6 @@ is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] -id: GO:0098602 ! single organism cell adhesion -is_a: GO:0044699 {is_inferred="true"} ! single-organism process - -[Term] id: GO:0098610 ! adhesion between unicellular organisms is_a: GO:0098740 {is_inferred="true"} ! multi organism cell adhesion @@ -61635,22 +58405,10 @@ is_a: GO:0098632 {is_inferred="true"} ! protein binding involved in cell-cell adhesion [Term] -id: GO:0098642 ! network-forming collagen trimer -is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component - -[Term] -id: GO:0098644 ! complex of collagen trimers -is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component - -[Term] id: GO:0098649 ! response to peptidyl-dipeptidase A inhibitor is_a: GO:0042493 {is_inferred="true"} ! response to drug [Term] -id: GO:0098651 ! basement membrane collagen trimer -is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component - -[Term] id: GO:0098655 ! cation transmembrane transport is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0034220 {is_inferred="true"} ! ion transmembrane transport @@ -61871,10 +58629,6 @@ is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane [Term] -id: GO:0098771 ! inorganic ion homeostasis -is_a: GO:0050801 {is_inferred="true"} ! ion homeostasis - -[Term] id: GO:0098773 ! skin epidermis development is_a: GO:0060429 {is_inferred="true"} ! epithelium development @@ -61934,15 +58688,6 @@ is_a: GO:0044456 {is_inferred="true"} ! synapse part [Term] -id: GO:0098796 ! membrane protein complex -is_a: GO:0044425 {is_inferred="true"} ! membrane part - -[Term] -id: GO:0098797 ! plasma membrane protein complex -is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex - -[Term] id: GO:0098798 ! mitochondrial protein complex is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part @@ -61959,10 +58704,6 @@ is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] -id: GO:0098801 ! regulation of renal system process -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] id: GO:0098802 ! plasma membrane receptor complex is_a: GO:0043235 {is_inferred="true"} ! receptor complex is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part @@ -63037,11 +59778,6 @@ is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region [Term] -id: GO:0099500 ! vesicle fusion to plasma membrane -is_a: GO:0006906 {is_inferred="true"} ! vesicle fusion -is_a: GO:0045026 {is_inferred="true"} ! plasma membrane fusion - -[Term] id: GO:0099501 ! exocytic vesicle membrane is_a: GO:0030658 {is_inferred="true"} ! transport vesicle membrane @@ -63064,11 +59800,6 @@ is_a: GO:0070050 {is_inferred="true"} ! neuron cellular homeostasis [Term] -id: GO:0099513 ! polymeric cytoskeletal fiber -is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part -is_a: GO:0099512 {is_inferred="true"} ! supramolecular fiber - -[Term] id: GO:0099514 ! synaptic vesicle cytoskeletal transport is_a: GO:0048489 {is_inferred="true"} ! synaptic vesicle transport is_a: GO:0099518 {is_inferred="true"} ! vesicle cytoskeletal trafficking @@ -63317,8 +60048,13 @@ is_a: GO:0098576 {is_inferred="true"} ! lumenal side of membrane [Term] +id: GO:0099622 ! cardiac muscle cell membrane repolarization +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell + +[Term] id: GO:0099623 ! regulation of cardiac muscle cell membrane repolarization is_a: GO:0060306 {is_inferred="true"} ! regulation of membrane repolarization +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization [Term] id: GO:0099624 ! atrial cardiac muscle cell membrane repolarization @@ -63990,21 +60726,6 @@ is_a: GO:1902915 {is_inferred="true"} ! negative regulation of protein polyubiquitination [Term] -id: GO:1900046 ! regulation of hemostasis -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0050878 {is_inferred="true"} ! regulation of body fluid levels - -[Term] -id: GO:1900047 ! negative regulation of hemostasis -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:1900046 {is_inferred="true"} ! regulation of hemostasis - -[Term] -id: GO:1900048 ! positive regulation of hemostasis -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:1900046 {is_inferred="true"} ! regulation of hemostasis - -[Term] id: GO:1900050 ! negative regulation of histone exchange is_a: GO:1900049 {is_inferred="true"} ! regulation of histone exchange is_a: GO:1905268 {is_inferred="true"} ! negative regulation of chromatin organization @@ -64249,26 +60970,6 @@ is_a: GO:1900095 {is_inferred="true"} ! regulation of dosage compensation by inactivation of X chromosome [Term] -id: GO:1900098 ! regulation of plasma cell differentiation -is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process -is_a: GO:0045577 {is_inferred="true"} ! regulation of B cell differentiation -is_a: GO:0050776 {is_inferred="true"} ! regulation of immune response - -[Term] -id: GO:1900099 ! negative regulation of plasma cell differentiation -is_a: GO:0002698 {is_inferred="true"} ! negative regulation of immune effector process -is_a: GO:0045578 {is_inferred="true"} ! negative regulation of B cell differentiation -is_a: GO:0050777 {is_inferred="true"} ! negative regulation of immune response -is_a: GO:1900098 {is_inferred="true"} ! regulation of plasma cell differentiation - -[Term] -id: GO:1900100 ! positive regulation of plasma cell differentiation -is_a: GO:0002699 {is_inferred="true"} ! positive regulation of immune effector process -is_a: GO:0045579 {is_inferred="true"} ! positive regulation of B cell differentiation -is_a: GO:0050778 {is_inferred="true"} ! positive regulation of immune response -is_a: GO:1900098 {is_inferred="true"} ! regulation of plasma cell differentiation - -[Term] id: GO:1900101 ! regulation of endoplasmic reticulum unfolded protein response is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress @@ -69789,20 +66490,11 @@ is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process [Term] -id: GO:1901135 ! carbohydrate derivative metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:1901136 ! carbohydrate derivative catabolic process is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] -id: GO:1901137 ! carbohydrate derivative biosynthetic process -is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:1901140 ! p-coumaryl alcohol transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport @@ -69895,10 +66587,6 @@ is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process [Term] -id: GO:1901160 ! primary amino compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process - -[Term] id: GO:1901161 ! primary amino compound catabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process @@ -70681,15 +67369,6 @@ is_a: GO:1902523 {is_inferred="true"} ! positive regulation of protein K63-linked ubiquitination [Term] -id: GO:1901317 ! regulation of flagellated sperm motility -is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility - -[Term] -id: GO:1901318 ! negative regulation of flagellated sperm motility -is_a: GO:1901317 {is_inferred="true"} ! regulation of flagellated sperm motility -is_a: GO:2000146 {is_inferred="true"} ! negative regulation of cell motility - -[Term] id: GO:1901319 ! positive regulation of trehalose catabolic process is_a: GO:0010676 {is_inferred="true"} ! positive regulation of cellular carbohydrate metabolic process is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process @@ -70811,16 +67490,6 @@ is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] -id: GO:1901342 ! regulation of vasculature development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:1901343 ! negative regulation of vasculature development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development - -[Term] id: GO:1901344 ! response to leptomycin B is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid @@ -70900,20 +67569,11 @@ is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] -id: GO:1901360 ! organic cyclic compound metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] -id: GO:1901362 ! organic cyclic compound biosynthetic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:1901363 ! heterocyclic compound binding is_a: GO:0005488 {is_inferred="true"} ! binding @@ -71929,21 +68589,11 @@ is_a: GO:0097305 {is_inferred="true"} ! response to alcohol [Term] -id: GO:1901564 ! organonitrogen compound metabolic process -is_a: GO:0006807 {is_inferred="true"} ! nitrogen compound metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:1901565 ! organonitrogen compound catabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] -id: GO:1901566 ! organonitrogen compound biosynthetic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process - -[Term] id: GO:1901567 ! fatty acid derivative binding is_a: GO:0005488 {is_inferred="true"} ! binding @@ -71968,16 +68618,6 @@ is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] -id: GO:1901575 ! organic substance catabolic process -is_a: GO:0009056 {is_inferred="true"} ! catabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] -id: GO:1901576 ! organic substance biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:1901577 ! regulation of alkane biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process @@ -72034,12 +68674,6 @@ is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] -id: GO:1901588 ! dendritic microtubule -is_a: GO:0005874 {is_inferred="true"} ! microtubule -is_a: GO:0044463 {is_inferred="true"} ! cell projection part -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:1901589 ! axon microtubule bundle is_a: GO:0033267 {is_inferred="true"} ! axon part is_a: GO:0097427 {is_inferred="true"} ! microtubule bundle @@ -72128,10 +68762,6 @@ is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity [Term] -id: GO:1901605 ! alpha-amino acid metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:1901606 ! alpha-amino acid catabolic process is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process @@ -72176,20 +68806,11 @@ is_a: GO:2000331 {is_inferred="true"} ! regulation of terminal button organization [Term] -id: GO:1901615 ! organic hydroxy compound metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process - -[Term] id: GO:1901616 ! organic hydroxy compound catabolic process is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] -id: GO:1901617 ! organic hydroxy compound biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process -is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process - -[Term] id: GO:1901618 ! organic hydroxy compound transmembrane transporter activity is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity @@ -72576,10 +69197,6 @@ is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound [Term] -id: GO:1901700 ! response to oxygen-containing compound -is_a: GO:0042221 {is_inferred="true"} ! response to chemical - -[Term] id: GO:1901701 ! cellular response to oxygen-containing compound is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -74641,11 +71258,6 @@ is_a: GO:1902090 {is_inferred="true"} ! regulation of fumagillin biosynthetic process [Term] -id: GO:1902093 ! positive regulation of flagellated sperm motility -is_a: GO:1901317 {is_inferred="true"} ! regulation of flagellated sperm motility -is_a: GO:2000147 {is_inferred="true"} ! positive regulation of cell motility - -[Term] id: GO:1902094 ! regulation of cartilage homeostasis is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process @@ -74703,23 +71315,6 @@ is_a: GO:1902102 {is_inferred="true"} ! regulation of metaphase/anaphase transition of meiotic cell cycle [Term] -id: GO:1902105 ! regulation of leukocyte differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:1903706 {is_inferred="true"} ! regulation of hemopoiesis - -[Term] -id: GO:1902106 ! negative regulation of leukocyte differentiation -is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:1902105 {is_inferred="true"} ! regulation of leukocyte differentiation -is_a: GO:1903707 {is_inferred="true"} ! negative regulation of hemopoiesis - -[Term] -id: GO:1902107 ! positive regulation of leukocyte differentiation -is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:1902105 {is_inferred="true"} ! regulation of leukocyte differentiation -is_a: GO:1903708 {is_inferred="true"} ! positive regulation of hemopoiesis - -[Term] id: GO:1902108 ! regulation of mitochondrial membrane permeability involved in apoptotic process is_a: GO:0046902 {is_inferred="true"} ! regulation of mitochondrial membrane permeability @@ -76544,33 +73139,6 @@ is_a: GO:1904019 {is_inferred="true"} ! epithelial cell apoptotic process [Term] -id: GO:1902490 ! regulation of sperm capacitation -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:1903429 {is_inferred="true"} ! regulation of cell maturation -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] -id: GO:1902491 ! negative regulation of sperm capacitation -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1902490 {is_inferred="true"} ! regulation of sperm capacitation -is_a: GO:1903430 {is_inferred="true"} ! negative regulation of cell maturation -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process - -[Term] -id: GO:1902492 ! positive regulation of sperm capacitation -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1902490 {is_inferred="true"} ! regulation of sperm capacitation -is_a: GO:1903431 {is_inferred="true"} ! positive regulation of cell maturation -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process - -[Term] -id: GO:1902494 ! catalytic complex -is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex - -[Term] id: GO:1902495 ! transmembrane transporter complex is_a: GO:0044425 {is_inferred="true"} ! membrane part @@ -76969,11 +73537,6 @@ is_a: GO:0071574 {is_inferred="true"} ! protein localization to medial cortex [Term] -id: GO:1902578 ! single-organism localization -is_a: GO:0044699 {is_inferred="true"} ! single-organism process -is_a: GO:0051179 {is_inferred="true"} ! localization - -[Term] id: GO:1902579 ! multi-organism localization is_a: GO:0051179 {is_inferred="true"} ! localization is_a: GO:0051704 {is_inferred="true"} ! multi-organism process @@ -77001,11 +73564,6 @@ is_a: GO:1902581 {is_inferred="true"} ! multi-organism cellular localization [Term] -id: GO:1902584 ! positive regulation of response to water deprivation -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus -is_a: GO:2000070 {is_inferred="true"} ! regulation of response to water deprivation - -[Term] id: GO:1902585 ! single-organism intercellular transport is_a: GO:0010496 {is_inferred="true"} ! intercellular transport is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process @@ -77028,11 +73586,6 @@ is_a: GO:1902586 {is_inferred="true"} ! multi-organism intercellular transport [Term] -id: GO:1902589 ! single-organism organelle organization -is_a: GO:0006996 {is_inferred="true"} ! organelle organization -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process - -[Term] id: GO:1902590 ! multi-organism organelle organization is_a: GO:0006996 {is_inferred="true"} ! organelle organization is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process @@ -77721,12 +74274,6 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] -id: GO:1902738 ! regulation of chondrocyte differentiation involved in endochondral bone morphogenesis -is_a: GO:0032330 {is_inferred="true"} ! regulation of chondrocyte differentiation -is_a: GO:1903010 {is_inferred="true"} ! regulation of bone development -is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis - -[Term] id: GO:1902739 ! regulation of interferon-alpha secretion is_a: GO:0032647 {is_inferred="true"} ! regulation of interferon-alpha production is_a: GO:0050707 {is_inferred="true"} ! regulation of cytokine secretion @@ -77837,12 +74384,6 @@ is_a: GO:1902759 {is_inferred="true"} ! Mo(VI)-molybdopterin cytosine dinucleotide metabolic process [Term] -id: GO:1902761 ! positive regulation of chondrocyte development -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:0032332 {is_inferred="true"} ! positive regulation of chondrocyte differentiation -is_a: GO:0061181 {is_inferred="true"} ! regulation of chondrocyte development - -[Term] id: GO:1902762 ! regulation of embryonic skeletal joint development is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development @@ -79051,22 +75592,6 @@ is_a: GO:0043241 {is_inferred="true"} ! protein complex disassembly [Term] -id: GO:1903010 ! regulation of bone development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:1903011 ! negative regulation of bone development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1903010 {is_inferred="true"} ! regulation of bone development - -[Term] -id: GO:1903012 ! positive regulation of bone development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1903010 {is_inferred="true"} ! regulation of bone development - -[Term] id: GO:1903013 ! response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0045472 {is_inferred="true"} ! response to ether @@ -79167,58 +75692,10 @@ is_a: GO:1904528 {is_inferred="true"} ! positive regulation of microtubule binding [Term] -id: GO:1903034 ! regulation of response to wounding -is_a: GO:0080134 {is_inferred="true"} ! regulation of response to stress - -[Term] -id: GO:1903035 ! negative regulation of response to wounding -is_a: GO:0048585 {is_inferred="true"} ! negative regulation of response to stimulus -is_a: GO:1903034 {is_inferred="true"} ! regulation of response to wounding - -[Term] -id: GO:1903036 ! positive regulation of response to wounding -is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus -is_a: GO:1903034 {is_inferred="true"} ! regulation of response to wounding - -[Term] -id: GO:1903037 ! regulation of leukocyte cell-cell adhesion -is_a: GO:0022407 {is_inferred="true"} ! regulation of cell-cell adhesion - -[Term] -id: GO:1903038 ! negative regulation of leukocyte cell-cell adhesion -is_a: GO:0022408 {is_inferred="true"} ! negative regulation of cell-cell adhesion -is_a: GO:1903037 {is_inferred="true"} ! regulation of leukocyte cell-cell adhesion - -[Term] -id: GO:1903039 ! positive regulation of leukocyte cell-cell adhesion -is_a: GO:0022409 {is_inferred="true"} ! positive regulation of cell-cell adhesion -is_a: GO:1903037 {is_inferred="true"} ! regulation of leukocyte cell-cell adhesion - -[Term] id: GO:1903040 ! exon-exon junction complex assembly is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly [Term] -id: GO:1903041 ! regulation of chondrocyte hypertrophy -is_a: GO:0001558 {is_inferred="true"} ! regulation of cell growth -is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth -is_a: GO:0061181 {is_inferred="true"} ! regulation of chondrocyte development - -[Term] -id: GO:1903042 ! negative regulation of chondrocyte hypertrophy -is_a: GO:0030308 {is_inferred="true"} ! negative regulation of cell growth -is_a: GO:0048640 {is_inferred="true"} ! negative regulation of developmental growth -is_a: GO:0061182 {is_inferred="true"} ! negative regulation of chondrocyte development -is_a: GO:1903041 {is_inferred="true"} ! regulation of chondrocyte hypertrophy - -[Term] -id: GO:1903043 ! positive regulation of chondrocyte hypertrophy -is_a: GO:0030307 {is_inferred="true"} ! positive regulation of cell growth -is_a: GO:0048639 {is_inferred="true"} ! positive regulation of developmental growth -is_a: GO:1902761 {is_inferred="true"} ! positive regulation of chondrocyte development -is_a: GO:1903041 {is_inferred="true"} ! regulation of chondrocyte hypertrophy - -[Term] id: GO:1903044 ! protein localization to membrane raft is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane @@ -79227,11 +75704,6 @@ is_a: GO:1901166 {is_inferred="true"} ! neural crest cell migration involved in autonomic nervous system development [Term] -id: GO:1903046 ! meiotic cell cycle process -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process -is_a: GO:0022414 {is_inferred="true"} ! reproductive process - -[Term] id: GO:1903047 ! mitotic cell cycle process is_a: GO:0022402 {is_inferred="true"} ! cell cycle process @@ -79265,20 +75737,6 @@ is_a: GO:1903364 {is_inferred="true"} ! positive regulation of cellular protein catabolic process [Term] -id: GO:1903053 ! regulation of extracellular matrix organization -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization - -[Term] -id: GO:1903054 ! negative regulation of extracellular matrix organization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization -is_a: GO:1903053 {is_inferred="true"} ! regulation of extracellular matrix organization - -[Term] -id: GO:1903055 ! positive regulation of extracellular matrix organization -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization -is_a: GO:1903053 {is_inferred="true"} ! regulation of extracellular matrix organization - -[Term] id: GO:1903056 ! regulation of melanosome organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization @@ -81043,20 +77501,6 @@ is_a: GO:2000379 {is_inferred="true"} ! positive regulation of reactive oxygen species metabolic process [Term] -id: GO:1903429 ! regulation of cell maturation -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development - -[Term] -id: GO:1903430 ! negative regulation of cell maturation -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:1903429 {is_inferred="true"} ! regulation of cell maturation - -[Term] -id: GO:1903431 ! positive regulation of cell maturation -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:1903429 {is_inferred="true"} ! regulation of cell maturation - -[Term] id: GO:1903432 ! regulation of TORC1 signaling is_a: GO:0032006 {is_inferred="true"} ! regulation of TOR signaling @@ -81322,26 +77766,6 @@ is_a: GO:1902405 {is_inferred="true"} ! mitotic actomyosin contractile ring localization [Term] -id: GO:1903487 ! regulation of lactation -is_a: GO:0050878 {is_inferred="true"} ! regulation of body fluid levels -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:1903488 ! negative regulation of lactation -is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1903487 {is_inferred="true"} ! regulation of lactation - -[Term] -id: GO:1903489 ! positive regulation of lactation -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1903487 {is_inferred="true"} ! regulation of lactation - -[Term] id: GO:1903490 ! positive regulation of mitotic cytokinesis is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle @@ -81502,20 +77926,6 @@ is_a: GO:1903519 {is_inferred="true"} ! regulation of mammary gland involution [Term] -id: GO:1903522 ! regulation of blood circulation -is_a: GO:0044057 {is_inferred="true"} ! regulation of system process - -[Term] -id: GO:1903523 ! negative regulation of blood circulation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation - -[Term] -id: GO:1903524 ! positive regulation of blood circulation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation - -[Term] id: GO:1903525 ! regulation of membrane tubulation is_a: GO:1903729 {is_inferred="true"} ! regulation of plasma membrane organization @@ -81539,23 +77949,6 @@ is_a: GO:1903528 {is_inferred="true"} ! regulation of dCDP biosynthetic process [Term] -id: GO:1903530 ! regulation of secretion by cell -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process -is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion - -[Term] -id: GO:1903531 ! negative regulation of secretion by cell -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] -id: GO:1903532 ! positive regulation of secretion by cell -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell - -[Term] id: GO:1903533 ! regulation of protein targeting is_a: GO:0033157 {is_inferred="true"} ! regulation of intracellular protein transport @@ -81690,11 +78083,6 @@ is_a: GO:1903558 {is_inferred="true"} ! 3-cyano-L-alanine metabolic process [Term] -id: GO:1903561 ! extracellular vesicle -is_a: GO:0031982 {is_inferred="true"} ! vesicle -is_a: GO:0043230 {is_inferred="true"} ! extracellular organelle - -[Term] id: GO:1903562 ! microtubule bundle formation involved in mitotic spindle midzone assembly is_a: GO:0001578 {is_inferred="true"} ! microtubule bundle formation is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis @@ -82446,25 +78834,6 @@ is_a: GO:1900370 {is_inferred="true"} ! positive regulation of RNA interference [Term] -id: GO:1903706 ! regulation of hemopoiesis -is_a: GO:0002682 {is_inferred="true"} ! regulation of immune system process -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:1903707 ! negative regulation of hemopoiesis -is_a: GO:0002683 {is_inferred="true"} ! negative regulation of immune system process -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1903706 {is_inferred="true"} ! regulation of hemopoiesis - -[Term] -id: GO:1903708 ! positive regulation of hemopoiesis -is_a: GO:0002684 {is_inferred="true"} ! positive regulation of immune system process -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1903706 {is_inferred="true"} ! regulation of hemopoiesis - -[Term] id: GO:1903709 ! uterine gland development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0048608 {is_inferred="true"} ! reproductive structure development @@ -82855,16 +79224,6 @@ is_a: GO:1904082 {is_inferred="true"} ! pyrimidine nucleobase transmembrane transport [Term] -id: GO:1903792 ! negative regulation of anion transport -is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport - -[Term] -id: GO:1903793 ! positive regulation of anion transport -is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport - -[Term] id: GO:1903794 ! cortisol binding is_a: GO:1990239 {is_inferred="true"} ! steroid hormone binding @@ -83564,16 +79923,6 @@ is_a: GO:1903939 {is_inferred="true"} ! regulation of TORC2 signaling [Term] -id: GO:1903941 ! negative regulation of respiratory gaseous exchange -is_a: GO:0043576 {is_inferred="true"} ! regulation of respiratory gaseous exchange -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process - -[Term] -id: GO:1903942 ! positive regulation of respiratory gaseous exchange -is_a: GO:0043576 {is_inferred="true"} ! regulation of respiratory gaseous exchange -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process - -[Term] id: GO:1903943 ! regulation of hepatocyte apoptotic process is_a: GO:1904035 {is_inferred="true"} ! regulation of epithelial cell apoptotic process @@ -83938,12 +80287,6 @@ is_a: GO:1904016 {is_inferred="true"} ! response to Thyroglobulin triiodothyronine [Term] -id: GO:1904018 ! positive regulation of vasculature development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development - -[Term] id: GO:1904020 ! regulation of G-protein coupled receptor internalization is_a: GO:0002090 {is_inferred="true"} ! regulation of receptor internalization is_a: GO:0008277 {is_inferred="true"} ! regulation of G-protein coupled receptor protein signaling pathway @@ -84138,16 +80481,6 @@ is_a: GO:1904054 {is_inferred="true"} ! regulation of cholangiocyte proliferation [Term] -id: GO:1904057 ! negative regulation of sensory perception of pain -is_a: GO:0031645 {is_inferred="true"} ! negative regulation of neurological system process -is_a: GO:0051930 {is_inferred="true"} ! regulation of sensory perception of pain - -[Term] -id: GO:1904058 ! positive regulation of sensory perception of pain -is_a: GO:0031646 {is_inferred="true"} ! positive regulation of neurological system process -is_a: GO:0051930 {is_inferred="true"} ! regulation of sensory perception of pain - -[Term] id: GO:1904059 ! regulation of locomotor rhythm is_a: GO:0042752 {is_inferred="true"} ! regulation of circadian rhythm is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior @@ -84408,11 +80741,6 @@ is_a: GO:1903116 {is_inferred="true"} ! positive regulation of actin filament-based movement [Term] -id: GO:1904115 ! axon cytoplasm -is_a: GO:0032838 {is_inferred="true"} ! cell projection cytoplasm -is_a: GO:0033267 {is_inferred="true"} ! axon part - -[Term] id: GO:1904116 ! response to vasopressin is_a: GO:0043434 {is_inferred="true"} ! response to peptide hormone @@ -85069,23 +81397,6 @@ is_a: GO:1904248 {is_inferred="true"} ! regulation of age-related resistance [Term] -id: GO:1904251 ! regulation of bile acid metabolic process -is_a: GO:0019218 {is_inferred="true"} ! regulation of steroid metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process - -[Term] -id: GO:1904252 ! negative regulation of bile acid metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0045939 {is_inferred="true"} ! negative regulation of steroid metabolic process -is_a: GO:1904251 {is_inferred="true"} ! regulation of bile acid metabolic process - -[Term] -id: GO:1904253 ! positive regulation of bile acid metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0045940 {is_inferred="true"} ! positive regulation of steroid metabolic process -is_a: GO:1904251 {is_inferred="true"} ! regulation of bile acid metabolic process - -[Term] id: GO:1904254 ! regulation of iron channel activity is_a: GO:0034759 {is_inferred="true"} ! regulation of iron ion transmembrane transport is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity @@ -85423,22 +81734,6 @@ is_a: GO:1904316 {is_inferred="true"} ! response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine [Term] -id: GO:1904318 ! regulation of smooth muscle contraction involved in micturition -is_a: GO:0006940 {is_inferred="true"} ! regulation of smooth muscle contraction -is_a: GO:0044062 {is_inferred="true"} ! regulation of excretion -is_a: GO:0098801 {is_inferred="true"} ! regulation of renal system process - -[Term] -id: GO:1904319 ! negative regulation of smooth muscle contraction involved in micturition -is_a: GO:0045986 {is_inferred="true"} ! negative regulation of smooth muscle contraction -is_a: GO:1904318 {is_inferred="true"} ! regulation of smooth muscle contraction involved in micturition - -[Term] -id: GO:1904320 ! positive regulation of smooth muscle contraction involved in micturition -is_a: GO:0045987 {is_inferred="true"} ! positive regulation of smooth muscle contraction -is_a: GO:1904318 {is_inferred="true"} ! regulation of smooth muscle contraction involved in micturition - -[Term] id: GO:1904321 ! response to forskolin is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0033993 {is_inferred="true"} ! response to lipid @@ -85640,20 +81935,6 @@ is_a: GO:1904359 {is_inferred="true"} ! regulation of spore germination [Term] -id: GO:1904362 ! regulation of calcitonin secretion -is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion - -[Term] -id: GO:1904363 ! negative regulation of calcitonin secretion -is_a: GO:0090278 {is_inferred="true"} ! negative regulation of peptide hormone secretion -is_a: GO:1904362 {is_inferred="true"} ! regulation of calcitonin secretion - -[Term] -id: GO:1904364 ! positive regulation of calcitonin secretion -is_a: GO:0090277 {is_inferred="true"} ! positive regulation of peptide hormone secretion -is_a: GO:1904362 {is_inferred="true"} ! regulation of calcitonin secretion - -[Term] id: GO:1904365 ! regulation of chemokinesis is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus @@ -88515,16 +84796,6 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] -id: GO:1904950 ! negative regulation of establishment of protein localization -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization - -[Term] -id: GO:1904951 ! positive regulation of establishment of protein localization -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0070201 {is_inferred="true"} ! regulation of establishment of protein localization - -[Term] id: GO:1904952 ! hydroxycinnamic acid transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport @@ -90117,23 +86388,6 @@ is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] -id: GO:1905276 ! regulation of epithelial tube formation -is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] -id: GO:1905277 ! negative regulation of epithelial tube formation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation -is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium - -[Term] -id: GO:1905278 ! positive regulation of epithelial tube formation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation -is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium - -[Term] id: GO:1905279 ! regulation of retrograde transport, endosome to Golgi is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport is_a: GO:1903649 {is_inferred="true"} ! regulation of cytoplasmic transport @@ -90408,20 +86662,6 @@ is_a: GO:0015696 {is_inferred="true"} ! ammonium transport [Term] -id: GO:1905330 ! regulation of morphogenesis of an epithelium -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis - -[Term] -id: GO:1905331 ! negative regulation of morphogenesis of an epithelium -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium - -[Term] -id: GO:1905332 ! positive regulation of morphogenesis of an epithelium -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium - -[Term] id: GO:1905333 ! regulation of gastric motility is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process @@ -91473,24 +87713,6 @@ is_a: GO:1905550 {is_inferred="true"} ! regulation of protein localization to endoplasmic reticulum [Term] -id: GO:1905553 ! regulation of blood vessel branching -is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis -is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure -is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium - -[Term] -id: GO:1905554 ! negative regulation of vessel branching -is_a: GO:0016525 {is_inferred="true"} ! negative regulation of angiogenesis -is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium -is_a: GO:1905553 {is_inferred="true"} ! regulation of blood vessel branching - -[Term] -id: GO:1905555 ! positive regulation blood vessel branching -is_a: GO:0045766 {is_inferred="true"} ! positive regulation of angiogenesis -is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium -is_a: GO:1905553 {is_inferred="true"} ! regulation of blood vessel branching - -[Term] id: GO:1905556 ! ciliary vesicle assembly is_a: GO:0016050 {is_inferred="true"} ! vesicle organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly @@ -93453,10 +89675,6 @@ is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] -id: GO:2000021 ! regulation of ion homeostasis -is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process - -[Term] id: GO:2000022 ! regulation of jasmonic acid mediated signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction @@ -93474,15 +89692,6 @@ is_a: GO:1905428 {is_inferred="true"} ! regulation of plant organ formation [Term] -id: GO:2000026 ! regulation of multicellular organismal development -is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process - -[Term] -id: GO:2000027 ! regulation of organ morphogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development - -[Term] id: GO:2000028 ! regulation of photoperiodism, flowering is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus @@ -93517,10 +89726,6 @@ is_a: GO:0080050 {is_inferred="true"} ! regulation of seed development [Term] -id: GO:2000035 ! regulation of stem cell division -is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division - -[Term] id: GO:2000036 ! regulation of stem cell population maintenance is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process @@ -93695,10 +89900,6 @@ is_a: GO:2000280 {is_inferred="true"} ! regulation of root development [Term] -id: GO:2000070 ! regulation of response to water deprivation -is_a: GO:0080134 {is_inferred="true"} ! regulation of response to stress - -[Term] id: GO:2000071 ! regulation of defense response by callose deposition is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032879 {is_inferred="true"} ! regulation of localization @@ -93924,17 +90125,6 @@ is_a: GO:2000109 {is_inferred="true"} ! regulation of macrophage apoptotic process [Term] -id: GO:2000112 ! regulation of cellular macromolecule biosynthetic process -is_a: GO:0010556 {is_inferred="true"} ! regulation of macromolecule biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process - -[Term] -id: GO:2000113 ! negative regulation of cellular macromolecule biosynthetic process -is_a: GO:0010558 {is_inferred="true"} ! negative regulation of macromolecule biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:2000112 {is_inferred="true"} ! regulation of cellular macromolecule biosynthetic process - -[Term] id: GO:2000114 ! regulation of establishment of cell polarity is_a: GO:0032878 {is_inferred="true"} ! regulation of establishment or maintenance of cell polarity @@ -94080,23 +90270,6 @@ is_a: GO:2000142 {is_inferred="true"} ! regulation of DNA-templated transcription, initiation [Term] -id: GO:2000145 ! regulation of cell motility -is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion -is_a: GO:0051270 {is_inferred="true"} ! regulation of cellular component movement - -[Term] -id: GO:2000146 ! negative regulation of cell motility -is_a: GO:0040013 {is_inferred="true"} ! negative regulation of locomotion -is_a: GO:0051271 {is_inferred="true"} ! negative regulation of cellular component movement -is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility - -[Term] -id: GO:2000147 ! positive regulation of cell motility -is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion -is_a: GO:0051272 {is_inferred="true"} ! positive regulation of cellular component movement -is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility - -[Term] id: GO:2000148 ! regulation of planar cell polarity pathway involved in ventricular septum morphogenesis is_a: GO:1901219 {is_inferred="true"} ! regulation of cardiac chamber morphogenesis is_a: GO:1904412 {is_inferred="true"} ! regulation of cardiac ventricle development @@ -94260,11 +90433,6 @@ is_a: GO:0032353 {is_inferred="true"} ! negative regulation of hormone biosynthetic process [Term] -id: GO:2000181 ! negative regulation of blood vessel morphogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:1901343 {is_inferred="true"} ! negative regulation of vasculature development - -[Term] id: GO:2000182 ! regulation of progesterone biosynthetic process is_a: GO:0010566 {is_inferred="true"} ! regulation of ketone biosynthetic process is_a: GO:0046885 {is_inferred="true"} ! regulation of hormone biosynthetic process @@ -94327,25 +90495,6 @@ is_a: GO:2000191 {is_inferred="true"} ! regulation of fatty acid transport [Term] -id: GO:2000194 ! regulation of female gonad development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] -id: GO:2000195 ! negative regulation of female gonad development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2000194 {is_inferred="true"} ! regulation of female gonad development -is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process - -[Term] -id: GO:2000196 ! positive regulation of female gonad development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2000194 {is_inferred="true"} ! regulation of female gonad development -is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process - -[Term] id: GO:2000197 ! regulation of ribonucleoprotein complex localization is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization @@ -94417,20 +90566,6 @@ is_a: GO:2000209 {is_inferred="true"} ! regulation of anoikis [Term] -id: GO:2000211 ! regulation of glutamate metabolic process -is_a: GO:0000820 {is_inferred="true"} ! regulation of glutamine family amino acid metabolic process - -[Term] -id: GO:2000212 ! negative regulation of glutamate metabolic process -is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process -is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process - -[Term] -id: GO:2000213 ! positive regulation of glutamate metabolic process -is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process -is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process - -[Term] id: GO:2000214 ! regulation of proline metabolic process is_a: GO:0000820 {is_inferred="true"} ! regulation of glutamine family amino acid metabolic process @@ -94578,20 +90713,6 @@ is_a: GO:2000238 {is_inferred="true"} ! regulation of tRNA export from nucleus [Term] -id: GO:2000241 ! regulation of reproductive process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:2000242 ! negative regulation of reproductive process -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] -id: GO:2000243 ! positive regulation of reproductive process -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process - -[Term] id: GO:2000244 ! regulation of FtsZ-dependent cytokinesis is_a: GO:0032465 {is_inferred="true"} ! regulation of cytokinesis is_a: GO:1903664 {is_inferred="true"} ! regulation of asexual reproduction @@ -94639,16 +90760,6 @@ is_a: GO:2000249 {is_inferred="true"} ! regulation of actin cytoskeleton reorganization [Term] -id: GO:2000252 ! negative regulation of feeding behavior -is_a: GO:0048521 {is_inferred="true"} ! negative regulation of behavior -is_a: GO:0060259 {is_inferred="true"} ! regulation of feeding behavior - -[Term] -id: GO:2000253 ! positive regulation of feeding behavior -is_a: GO:0048520 {is_inferred="true"} ! positive regulation of behavior -is_a: GO:0060259 {is_inferred="true"} ! regulation of feeding behavior - -[Term] id: GO:2000254 ! regulation of male germ cell proliferation is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process @@ -94752,16 +90863,6 @@ is_a: GO:2000269 {is_inferred="true"} ! regulation of fibroblast apoptotic process [Term] -id: GO:2000272 ! negative regulation of receptor activity -is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity -is_a: GO:0044092 {is_inferred="true"} ! negative regulation of molecular function - -[Term] -id: GO:2000273 ! positive regulation of receptor activity -is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity -is_a: GO:0044093 {is_inferred="true"} ! positive regulation of molecular function - -[Term] id: GO:2000274 ! regulation of epithelial cell migration, open tracheal system is_a: GO:0010632 {is_inferred="true"} ! regulation of epithelial cell migration is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -94849,20 +90950,6 @@ is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation [Term] -id: GO:2000292 ! regulation of defecation -is_a: GO:0044062 {is_inferred="true"} ! regulation of excretion - -[Term] -id: GO:2000293 ! negative regulation of defecation -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2000292 {is_inferred="true"} ! regulation of defecation - -[Term] -id: GO:2000294 ! positive regulation of defecation -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2000292 {is_inferred="true"} ! regulation of defecation - -[Term] id: GO:2000295 ! regulation of hydrogen peroxide catabolic process is_a: GO:0010310 {is_inferred="true"} ! regulation of hydrogen peroxide metabolic process is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process @@ -95310,34 +91397,6 @@ is_a: GO:2000377 {is_inferred="true"} ! regulation of reactive oxygen species metabolic process [Term] -id: GO:2000380 ! regulation of mesoderm development -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] -id: GO:2000381 ! negative regulation of mesoderm development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development - -[Term] -id: GO:2000382 ! positive regulation of mesoderm development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:2000380 {is_inferred="true"} ! regulation of mesoderm development - -[Term] -id: GO:2000383 ! regulation of ectoderm development -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process - -[Term] -id: GO:2000384 ! negative regulation of ectoderm development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:2000383 {is_inferred="true"} ! regulation of ectoderm development - -[Term] -id: GO:2000385 ! positive regulation of ectoderm development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:2000383 {is_inferred="true"} ! regulation of ectoderm development - -[Term] id: GO:2000386 ! positive regulation of ovarian follicle development is_a: GO:2000196 {is_inferred="true"} ! positive regulation of female gonad development is_a: GO:2000354 {is_inferred="true"} ! regulation of ovarian follicle development @@ -96092,16 +92151,6 @@ is_a: GO:2000539 {is_inferred="true"} ! regulation of protein geranylgeranylation [Term] -id: GO:2000542 ! negative regulation of gastrulation -is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation -is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development - -[Term] -id: GO:2000543 ! positive regulation of gastrulation -is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation -is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development - -[Term] id: GO:2000544 ! regulation of endothelial cell chemotaxis to fibroblast growth factor is_a: GO:1904847 {is_inferred="true"} ! regulation of cell chemotaxis to fibroblast growth factor is_a: GO:2001026 {is_inferred="true"} ! regulation of endothelial cell chemotaxis @@ -96422,26 +92471,6 @@ is_a: GO:2000606 {is_inferred="true"} ! regulation of cell proliferation involved in mesonephros development [Term] -id: GO:2000609 ! regulation of thyroid hormone generation -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0032350 {is_inferred="true"} ! regulation of hormone metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process - -[Term] -id: GO:2000610 ! negative regulation of thyroid hormone generation -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0032351 {is_inferred="true"} ! negative regulation of hormone metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process -is_a: GO:2000609 {is_inferred="true"} ! regulation of thyroid hormone generation - -[Term] -id: GO:2000611 ! positive regulation of thyroid hormone generation -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0032352 {is_inferred="true"} ! positive regulation of hormone metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process -is_a: GO:2000609 {is_inferred="true"} ! regulation of thyroid hormone generation - -[Term] id: GO:2000612 ! regulation of thyroid-stimulating hormone secretion is_a: GO:0090276 {is_inferred="true"} ! regulation of peptide hormone secretion @@ -97502,10 +93531,6 @@ is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter [Term] -id: GO:2000821 ! regulation of grooming behavior -is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior - -[Term] id: GO:2000822 ! regulation of behavioral fear response is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0050795 {is_inferred="true"} ! regulation of behavior @@ -97542,43 +93567,6 @@ is_a: GO:0071026 {is_inferred="true"} ! cytoplasmic RNA surveillance [Term] -id: GO:2000828 ! regulation of parathyroid hormone secretion -is_a: GO:0044060 {is_inferred="true"} ! regulation of endocrine process -is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion - -[Term] -id: GO:2000829 ! negative regulation of parathyroid hormone secretion -is_a: GO:0046888 {is_inferred="true"} ! negative regulation of hormone secretion -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2000828 {is_inferred="true"} ! regulation of parathyroid hormone secretion - -[Term] -id: GO:2000830 ! positive regulation of parathyroid hormone secretion -is_a: GO:0046887 {is_inferred="true"} ! positive regulation of hormone secretion -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2000828 {is_inferred="true"} ! regulation of parathyroid hormone secretion - -[Term] -id: GO:2000831 ! regulation of steroid hormone secretion -is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport -is_a: GO:0044060 {is_inferred="true"} ! regulation of endocrine process -is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion - -[Term] -id: GO:2000832 ! negative regulation of steroid hormone secretion -is_a: GO:0032369 {is_inferred="true"} ! negative regulation of lipid transport -is_a: GO:0046888 {is_inferred="true"} ! negative regulation of hormone secretion -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion - -[Term] -id: GO:2000833 ! positive regulation of steroid hormone secretion -is_a: GO:0032370 {is_inferred="true"} ! positive regulation of lipid transport -is_a: GO:0046887 {is_inferred="true"} ! positive regulation of hormone secretion -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion - -[Term] id: GO:2000834 ! regulation of androgen secretion is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion @@ -97644,20 +93632,6 @@ is_a: GO:2000843 {is_inferred="true"} ! regulation of testosterone secretion [Term] -id: GO:2000846 ! regulation of corticosteroid hormone secretion -is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion - -[Term] -id: GO:2000847 ! negative regulation of corticosteroid hormone secretion -is_a: GO:2000832 {is_inferred="true"} ! negative regulation of steroid hormone secretion -is_a: GO:2000846 {is_inferred="true"} ! regulation of corticosteroid hormone secretion - -[Term] -id: GO:2000848 ! positive regulation of corticosteroid hormone secretion -is_a: GO:2000833 {is_inferred="true"} ! positive regulation of steroid hormone secretion -is_a: GO:2000846 {is_inferred="true"} ! regulation of corticosteroid hormone secretion - -[Term] id: GO:2000849 ! regulation of glucocorticoid secretion is_a: GO:2000846 {is_inferred="true"} ! regulation of corticosteroid hormone secretion @@ -97686,34 +93660,6 @@ is_a: GO:2000852 {is_inferred="true"} ! regulation of corticosterone secretion [Term] -id: GO:2000855 ! regulation of mineralocorticoid secretion -is_a: GO:2000846 {is_inferred="true"} ! regulation of corticosteroid hormone secretion - -[Term] -id: GO:2000856 ! negative regulation of mineralocorticoid secretion -is_a: GO:2000847 {is_inferred="true"} ! negative regulation of corticosteroid hormone secretion -is_a: GO:2000855 {is_inferred="true"} ! regulation of mineralocorticoid secretion - -[Term] -id: GO:2000857 ! positive regulation of mineralocorticoid secretion -is_a: GO:2000848 {is_inferred="true"} ! positive regulation of corticosteroid hormone secretion -is_a: GO:2000855 {is_inferred="true"} ! regulation of mineralocorticoid secretion - -[Term] -id: GO:2000858 ! regulation of aldosterone secretion -is_a: GO:2000855 {is_inferred="true"} ! regulation of mineralocorticoid secretion - -[Term] -id: GO:2000859 ! negative regulation of aldosterone secretion -is_a: GO:2000856 {is_inferred="true"} ! negative regulation of mineralocorticoid secretion -is_a: GO:2000858 {is_inferred="true"} ! regulation of aldosterone secretion - -[Term] -id: GO:2000860 ! positive regulation of aldosterone secretion -is_a: GO:2000857 {is_inferred="true"} ! positive regulation of mineralocorticoid secretion -is_a: GO:2000858 {is_inferred="true"} ! regulation of aldosterone secretion - -[Term] id: GO:2000861 ! regulation of estrogen secretion is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion @@ -97762,23 +93708,6 @@ is_a: GO:2000867 {is_inferred="true"} ! regulation of estrone secretion [Term] -id: GO:2000870 ! regulation of progesterone secretion -is_a: GO:2000194 {is_inferred="true"} ! regulation of female gonad development -is_a: GO:2000831 {is_inferred="true"} ! regulation of steroid hormone secretion - -[Term] -id: GO:2000871 ! negative regulation of progesterone secretion -is_a: GO:2000195 {is_inferred="true"} ! negative regulation of female gonad development -is_a: GO:2000832 {is_inferred="true"} ! negative regulation of steroid hormone secretion -is_a: GO:2000870 {is_inferred="true"} ! regulation of progesterone secretion - -[Term] -id: GO:2000872 ! positive regulation of progesterone secretion -is_a: GO:2000196 {is_inferred="true"} ! positive regulation of female gonad development -is_a: GO:2000833 {is_inferred="true"} ! positive regulation of steroid hormone secretion -is_a: GO:2000870 {is_inferred="true"} ! regulation of progesterone secretion - -[Term] id: GO:2000873 ! regulation of histone H4 acetylation involved in response to DNA damage stimulus is_a: GO:0090239 {is_inferred="true"} ! regulation of histone H4 acetylation is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus @@ -99165,27 +95094,6 @@ is_a: GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport [Term] -id: GO:2001151 ! regulation of renal water transport -is_a: GO:0032844 {is_inferred="true"} ! regulation of homeostatic process -is_a: GO:0050878 {is_inferred="true"} ! regulation of body fluid levels -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport -is_a: GO:0098801 {is_inferred="true"} ! regulation of renal system process - -[Term] -id: GO:2001152 ! negative regulation of renal water transport -is_a: GO:0032845 {is_inferred="true"} ! negative regulation of homeostatic process -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process -is_a: GO:2001151 {is_inferred="true"} ! regulation of renal water transport - -[Term] -id: GO:2001153 ! positive regulation of renal water transport -is_a: GO:0032846 {is_inferred="true"} ! positive regulation of homeostatic process -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process -is_a: GO:2001151 {is_inferred="true"} ! regulation of renal water transport - -[Term] id: GO:2001154 ! regulation of glycolytic fermentation to ethanol is_a: GO:0010906 {is_inferred="true"} ! regulation of glucose metabolic process is_a: GO:0043465 {is_inferred="true"} ! regulation of fermentation @@ -100082,3 +95990,43 @@ id: GOCHE:51086 ! substance with chemical property is_a: CHEBI:24431 {is_inferred="true"} ! chemical entity +[Term] +id: UBERON:0001289 ! descending limb of loop of Henle +is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium + +[Term] +id: UBERON:0003261 ! thyroid primordium endoderm +is_a: UBERON:0004119 {is_inferred="true"} ! endoderm-derived structure + +[Term] +id: UBERON:0004134 ! proximal tubule +is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium + +[Term] +id: UBERON:0004136 ! intermediate tubule +is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium + +[Term] +id: UBERON:0005130 ! metanephric loop of Henle +is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium + +[Term] +id: UBERON:0005164 ! ascending limb of loop of Henle +is_a: UBERON:0004810 {is_inferred="true"} ! nephron tubule epithelium + +[Term] +id: UBERON:0005421 ! pectoral appendage apical ectodermal ridge +is_a: UBERON:0004121 {is_inferred="true"} ! ectoderm-derived structure + +[Term] +id: UBERON:0005422 ! pelvic appendage apical ectodermal ridge +is_a: UBERON:0004121 {is_inferred="true"} ! ectoderm-derived structure + +[Term] +id: UBERON:0005721 ! pronephric mesoderm +is_a: UBERON:0004120 {is_inferred="true"} ! mesoderm-derived structure + +[Term] +id: UBERON:0008817 ! thymus primordium endoderm +is_a: UBERON:0004119 {is_inferred="true"} ! endoderm-derived structure + ------------------------------------------------------------------------ r37298 | paola | 2016-11-29 05:27:40 -0800 (Tue, 29 Nov 2016) | 2 lines GH GO:0008280 cohesin core heterodimer #12598 - work in progress - edited capable_of_part_of link changes in entailments ------------------------------------------------------------------------ r37294 | dph | 2016-11-28 12:00:10 -0800 (Mon, 28 Nov 2016) | 2 lines Tweaked the definition of new ubiquitin hydrolase term. changes in entailments ------------------------------------------------------------------------ r37292 | dph | 2016-11-28 11:12:48 -0800 (Mon, 28 Nov 2016) | 2 lines SF12830-closed changes in entailments ------------------------------------------------------------------------ r37290 | dph | 2016-11-28 08:52:30 -0800 (Mon, 28 Nov 2016) | 2 lines Removed exact synonym from nuclear condensin complex. changes in entailments ------------------------------------------------------------------------ r37288 | termgenie | 2016-11-28 08:35:44 -0800 (Mon, 28 Nov 2016) | 2 lines TermGenie commit for user: mah reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37288) +++ go_inferences.obo (working copy) @@ -86447,7 +86447,7 @@ [Term] id: GO:1904519 ! protein localization to microtubule minus-end -is_a: GO:0035372 {is_inferred="true"} ! protein localization to microtubule +is_a: GO:1905725 {is_inferred="true"} ! protein localization to microtubule end [Term] id: GO:1904520 ! regulation of myofibroblast cell apoptotic process @@ -87908,7 +87908,7 @@ [Term] id: GO:1904825 ! protein localization to microtubule plus-end -is_a: GO:0035372 {is_inferred="true"} ! protein localization to microtubule +is_a: GO:1905725 {is_inferred="true"} ! protein localization to microtubule end [Term] id: GO:1904826 ! regulation of hydrogen sulfide biosynthetic process @@ -92316,6 +92316,10 @@ is_a: GO:1905722 {is_inferred="true"} ! regulation of trypanothione biosynthetic process [Term] +id: GO:1905725 ! protein localization to microtubule end +is_a: GO:0035372 {is_inferred="true"} ! protein localization to microtubule + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37285 | dph | 2016-11-28 05:16:08 -0800 (Mon, 28 Nov 2016) | 2 lines Removed logical definition of obsoleted term. changes in entailments ------------------------------------------------------------------------ r37277 | davidos | 2016-11-27 09:08:09 -0800 (Sun, 27 Nov 2016) | 1 line Fixed accidental taxon restriction on cell bud added to budding yeast instead of fission yeast! changes in entailments ------------------------------------------------------------------------ r37275 | davidos | 2016-11-27 07:30:34 -0800 (Sun, 27 Nov 2016) | 1 line removed taxon constraint on virion. Needed until this Uberon ticket is fixed: https://github.com/obophenotype/uberon/issues/1297 changes in entailments ------------------------------------------------------------------------ r37258 | davidos | 2016-11-25 09:22:03 -0800 (Fri, 25 Nov 2016) | 11 lines Fixed inconsistency for these two classes changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37258) +++ go_inferences.obo (working copy) @@ -5282,6 +5282,10 @@ is_a: GO:0090568 {is_inferred="true"} ! nuclear transcriptional repressor complex [Term] +id: GO:0005694 ! chromosome +is_a: GO:0043232 {is_inferred="true"} ! intracellular non-membrane-bounded organelle + +[Term] id: GO:0005701 ! polytene chromosome chromocenter is_a: GO:0010369 {is_inferred="true"} ! chromocenter @@ -18079,7 +18083,6 @@ [Term] id: GO:0019038 ! provirus is_a: GO:0019015 {is_inferred="true"} ! viral genome -is_a: GO:0044427 {is_inferred="true"} ! chromosomal part [Term] id: GO:0019068 ! virion assembly @@ -34592,6 +34595,11 @@ is_a: GO:0019005 {is_inferred="true"} ! SCF ubiquitin ligase complex [Term] +id: GO:0043229 ! intracellular organelle +is_a: GO:0043226 {is_inferred="true"} ! organelle +is_a: GO:0044424 {is_inferred="true"} ! intracellular part + +[Term] id: GO:0043230 ! extracellular organelle is_a: GO:0043226 {is_inferred="true"} ! organelle is_a: GO:0044421 {is_inferred="true"} ! extracellular region part @@ -61269,7 +61277,7 @@ [Term] id: GO:0097708 ! intracellular vesicle -is_a: GO:0044424 {is_inferred="true"} ! intracellular part +is_a: GO:0043229 {is_inferred="true"} ! intracellular organelle [Term] id: GO:0097733 ! photoreceptor cell cilium @@ -62212,7 +62220,7 @@ is_a: GO:0098890 {is_inferred="true"} ! extrinsic component of postsynaptic membrane [Term] -id: GO:0098894 ! extrinsic component of presynaptic endocytic zone +id: GO:0098894 ! extrinsic component of presynaptic endocytic zone membrane is_a: GO:0098888 {is_inferred="true"} ! extrinsic component of presynaptic membrane [Term] @@ -62838,11 +62846,8 @@ [Term] id: GO:0099065 ! integral component of spine apparatus membrane -is_a: GO:0016021 {is_inferred="true"} ! integral component of membrane -is_a: GO:0044422 {is_inferred="true"} ! organelle part -is_a: GO:0044456 {is_inferred="true"} ! synapse part -is_a: GO:0044463 {is_inferred="true"} ! cell projection part -is_a: GO:0097458 {is_inferred="true"} ! neuron part +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane +is_a: GO:0098952 {is_inferred="true"} ! intrinsic component of spine apparatus membrane [Term] id: GO:0099066 ! integral component of neuronal dense core vesicle membrane @@ -63023,6 +63028,11 @@ is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] +id: GO:0099113 ! negative regulation of presynaptic cytosolic calcium concentration +is_a: GO:0051481 {is_inferred="true"} ! negative regulation of cytosolic calcium ion concentration +is_a: GO:0099509 {is_inferred="true"} ! regulation of presynaptic cytosolic calcium ion concentration + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -83421,7 +83431,9 @@ [Term] id: GO:1903916 ! regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation is_a: GO:0006446 {is_inferred="true"} ! regulation of translational initiation +is_a: GO:0032535 {is_inferred="true"} ! regulation of cellular component size is_a: GO:0035304 {is_inferred="true"} ! regulation of protein dephosphorylation +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress [Term] @@ -83428,6 +83440,7 @@ id: GO:1903917 ! positive regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation is_a: GO:0035307 {is_inferred="true"} ! positive regulation of protein dephosphorylation is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903916 {is_inferred="true"} ! regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation [Term] ------------------------------------------------------------------------ r37255 | termgenie | 2016-11-25 07:54:29 -0800 (Fri, 25 Nov 2016) | 3 lines Changed my mind about these terms. WIll add slightly more specific ones instead. TermGenie commit for user: dos reviewed by dos changes in entailments ------------------------------------------------------------------------ r37253 | termgenie | 2016-11-25 07:25:34 -0800 (Fri, 25 Nov 2016) | 4 lines TermGenie commit for user: rz reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37253) +++ go_inferences.obo (working copy) @@ -92278,6 +92278,31 @@ is_a: GO:0097427 {is_inferred="true"} ! microtubule bundle [Term] +id: GO:1905721 ! mitotic spindle astral microtubule end +is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part +is_a: GO:1990752 {is_inferred="true"} ! microtubule end + +[Term] +id: GO:1905722 ! regulation of trypanothione biosynthetic process +is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process +is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process + +[Term] +id: GO:1905723 ! negative regulation of trypanothione biosynthetic process +is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process +is_a: GO:1905722 {is_inferred="true"} ! regulation of trypanothione biosynthetic process + +[Term] +id: GO:1905724 ! positive regulation of trypanothione biosynthetic process +is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process +is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process +is_a: GO:1905722 {is_inferred="true"} ! regulation of trypanothione biosynthetic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37246 | mcourtot | 2016-11-25 03:13:25 -0800 (Fri, 25 Nov 2016) | 1 line merged GO:0001157 and GO:0001005 as per https://github.com/geneontology/go-ontology/issues/12821 changes in entailments ------------------------------------------------------------------------ r37244 | termgenie | 2016-11-25 02:56:02 -0800 (Fri, 25 Nov 2016) | 3 lines TermGenie commit for user: mah reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37244) +++ go_inferences.obo (working copy) @@ -92269,6 +92269,15 @@ is_a: GO:1905715 {is_inferred="true"} ! regulation of cornification [Term] +id: GO:1905719 ! protein localization to perinuclear region of cytoplasm +is_a: GO:0008104 {is_inferred="true"} ! protein localization + +[Term] +id: GO:1905720 ! cytoplasmic microtubule bundle +is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part +is_a: GO:0097427 {is_inferred="true"} ! microtubule bundle + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37240 | davidos | 2016-11-24 11:47:40 -0800 (Thu, 24 Nov 2016) | 1 line removed EC def on GO:0048312 ; intracellular distribution of mitochondria in order to get build to pass. Should investigate merging with parent class. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37240) +++ go_inferences.obo (working copy) @@ -8237,6 +8237,10 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] +id: GO:0007017 ! microtubule-based process +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process + +[Term] id: GO:0007026 ! negative regulation of microtubule depolymerization is_a: GO:0031111 {is_inferred="true"} ! negative regulation of microtubule polymerization or depolymerization is_a: GO:0031114 {is_inferred="true"} ! regulation of microtubule depolymerization @@ -13958,6 +13962,7 @@ [Term] id: GO:0010970 ! transport along microtubule is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport +is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -16858,7 +16863,6 @@ [Term] id: GO:0016079 ! synaptic vesicle exocytosis -is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission is_a: GO:0099643 {is_inferred="true"} ! signal release from synapse @@ -17150,7 +17154,7 @@ [Term] id: GO:0016182 ! synaptic vesicle budding from endosome -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport is_a: GO:0070142 {is_inferred="true"} ! synaptic vesicle budding is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse @@ -29413,6 +29417,10 @@ is_a: GO:0015562 {is_inferred="true"} ! efflux transmembrane transporter activity [Term] +id: GO:0034640 ! establishment of mitochondrion localization by microtubule attachment +is_a: GO:0099098 {is_inferred="true"} ! microtubule polymerization based movement + +[Term] id: GO:0034642 ! mitochondrion migration along actin filament is_a: GO:0099515 {is_inferred="true"} ! actin filament-based transport is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport @@ -29419,6 +29427,7 @@ [Term] id: GO:0034643 ! establishment of mitochondrion localization, microtubule-mediated +is_a: GO:0051654 {is_inferred="true"} ! establishment of mitochondrion localization is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] @@ -31538,10 +31547,6 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] -id: GO:0036465 ! synaptic vesicle recycling -is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse - -[Term] id: GO:0036502 ! Derlin-1-VIMP complex is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex @@ -42896,6 +42901,11 @@ is_a: GO:0099518 {is_inferred="true"} ! vesicle cytoskeletal trafficking [Term] +id: GO:0047497 ! mitochondrion transport along microtubule +is_a: GO:0034643 {is_inferred="true"} ! establishment of mitochondrion localization, microtubule-mediated +is_a: GO:0072384 {is_inferred="true"} ! organelle transport along microtubule + +[Term] id: GO:0048018 ! receptor agonist activity is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity @@ -43180,9 +43190,8 @@ [Term] id: GO:0048206 ! vesicle targeting, cis-Golgi to rough ER -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0048208 ! COPII vesicle coating @@ -43355,10 +43364,6 @@ is_a: GO:0048308 {is_inferred="true"} ! organelle inheritance [Term] -id: GO:0048312 ! intracellular distribution of mitochondria -is_a: GO:0048311 {is_inferred="true"} ! mitochondrion distribution - -[Term] id: GO:0048313 ! Golgi inheritance is_a: GO:0048308 {is_inferred="true"} ! organelle inheritance @@ -43645,13 +43650,14 @@ [Term] id: GO:0048488 ! synaptic vesicle endocytosis -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse [Term] id: GO:0048489 ! synaptic vesicle transport is_a: GO:0097479 {is_inferred="true"} ! synaptic vesicle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0048490 ! anterograde synaptic vesicle transport @@ -47191,6 +47197,8 @@ [Term] id: GO:0051654 ! establishment of mitochondrion localization is_a: GO:0051646 {is_inferred="true"} ! mitochondrion localization +is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization [Term] id: GO:0051655 ! maintenance of vesicle location @@ -47609,7 +47617,7 @@ [Term] id: GO:0051904 ! pigment granule transport is_a: GO:0051875 {is_inferred="true"} ! pigment granule localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0051917 ! regulation of fibrinolysis @@ -51887,6 +51895,7 @@ [Term] id: GO:0061707 ! extracellular exosome macropinocytosis +is_a: GO:0006858 {is_inferred="true"} ! extracellular transport is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization @@ -60733,7 +60742,7 @@ [Term] id: GO:0097120 ! receptor localization to synapse -is_a: GO:0051179 {is_inferred="true"} ! localization +is_a: GO:0051668 {is_inferred="true"} ! localization within membrane [Term] id: GO:0097149 ! centralspindlin complex @@ -62941,6 +62950,10 @@ is_a: GO:0044091 {is_inferred="true"} ! membrane biogenesis [Term] +id: GO:0099098 ! microtubule polymerization based movement +is_a: GO:0007018 {is_inferred="true"} ! microtubule-based movement + +[Term] id: GO:0099099 ! G-protein gated ion channel activity is_a: GO:0005216 {is_inferred="true"} ! ion channel activity @@ -62991,6 +63004,25 @@ is_a: GO:0099105 {is_inferred="true"} ! ion channel modulating, G-protein coupled receptor signaling pathway [Term] +id: GO:0099110 ! microtubule polymerization based protein transport to cell tip cortex +is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport +is_a: GO:0099112 {is_inferred="true"} ! microtubule polymerization based protein transport +is_a: GO:1990896 {is_inferred="true"} ! protein localization to cell cortex of cell tip + +[Term] +id: GO:0099111 ! microtubule-based transport +is_a: GO:0007018 {is_inferred="true"} ! microtubule-based movement +is_a: GO:0044765 {is_inferred="true"} ! single-organism transport + +[Term] +id: GO:0099112 ! microtubule polymerization based protein transport +is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization +is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0099098 {is_inferred="true"} ! microtubule polymerization based movement +is_a: GO:0099111 {is_inferred="true"} ! microtubule-based transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -63030,7 +63062,6 @@ id: GO:0099514 ! synaptic vesicle cytoskeletal transport is_a: GO:0048489 {is_inferred="true"} ! synaptic vesicle transport is_a: GO:0099518 {is_inferred="true"} ! vesicle cytoskeletal trafficking -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0099515 ! actin filament-based transport @@ -63236,6 +63267,10 @@ is_a: GO:0099566 {is_inferred="true"} ! regulation of postsynaptic cytosolic calcium ion concentration [Term] +id: GO:0099592 ! endocytosed synaptic vesicle processing via endosome +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport + +[Term] id: GO:0099601 ! regulation of neurotransmitter receptor activity is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity @@ -77446,7 +77481,7 @@ [Term] id: GO:1902683 ! regulation of receptor localization to synapse -is_a: GO:0032879 {is_inferred="true"} ! regulation of localization +is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization [Term] id: GO:1902684 ! negative regulation of receptor localization to synapse @@ -77985,17 +78020,17 @@ [Term] id: GO:1902803 ! regulation of synaptic vesicle transport -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport [Term] id: GO:1902804 ! negative regulation of synaptic vesicle transport -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:1902803 {is_inferred="true"} ! regulation of synaptic vesicle transport [Term] id: GO:1902805 ! positive regulation of synaptic vesicle transport -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:1902803 {is_inferred="true"} ! regulation of synaptic vesicle transport [Term] @@ -78511,20 +78546,19 @@ [Term] id: GO:1902908 ! regulation of melanosome transport +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process -is_a: GO:0051049 {is_inferred="true"} ! regulation of transport -is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization [Term] id: GO:1902909 ! negative regulation of melanosome transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:1902908 {is_inferred="true"} ! regulation of melanosome transport [Term] id: GO:1902910 ! positive regulation of melanosome transport +is_a: GO:0032388 {is_inferred="true"} ! positive regulation of intracellular transport is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:1902908 {is_inferred="true"} ! regulation of melanosome transport [Term] @@ -93067,6 +93101,7 @@ [Term] id: GO:1990771 ! clathrin-dependent extracellular exosome endocytosis +is_a: GO:0006858 {is_inferred="true"} ! extracellular transport is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization [Term] ------------------------------------------------------------------------ r37237 | paola | 2016-11-24 08:48:03 -0800 (Thu, 24 Nov 2016) | 3 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress - edited and rehoused ’vasoconstriction’ and ‘vasodilation’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37237) +++ go_inferences.obo (working copy) @@ -18169,7 +18169,7 @@ [Term] id: GO:0019229 ! regulation of vasoconstriction -is_a: GO:0050880 {is_inferred="true"} ! regulation of blood vessel size +is_a: GO:0097746 {is_inferred="true"} ! regulation of blood vessel diameter is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation [Term] @@ -32536,7 +32536,7 @@ [Term] id: GO:0042312 ! regulation of vasodilation -is_a: GO:0050880 {is_inferred="true"} ! regulation of blood vessel size +is_a: GO:0097746 {is_inferred="true"} ! regulation of blood vessel diameter is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation [Term] ------------------------------------------------------------------------ r37235 | paola | 2016-11-24 08:26:58 -0800 (Thu, 24 Nov 2016) | 3 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress - edited ‘regulation of blood vessel size by renin-angiotensin’ node changes in entailments ------------------------------------------------------------------------ r37233 | paola | 2016-11-24 07:49:57 -0800 (Thu, 24 Nov 2016) | 2 lines GH NTR: vasodilation by nitric oxide #12253 - work in progress - added GO:0097746 regulation of blood vessel diameter changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37233) +++ go_inferences.obo (working copy) @@ -61279,6 +61279,10 @@ is_a: GO:0034471 {is_inferred="true"} ! ncRNA 5'-end processing [Term] +id: GO:0097746 ! regulation of blood vessel diameter +is_a: GO:0050880 {is_inferred="true"} ! regulation of blood vessel size + +[Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly ------------------------------------------------------------------------ r37226 | termgenie | 2016-11-24 06:52:21 -0800 (Thu, 24 Nov 2016) | 4 lines TermGenie commit for user: pga reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37226) +++ go_inferences.obo (working copy) @@ -92214,6 +92214,23 @@ is_a: GO:1905711 {is_inferred="true"} ! response to phosphatidylethanolamine [Term] +id: GO:1905715 ! regulation of cornification +is_a: GO:0043067 {is_inferred="true"} ! regulation of programmed cell death +is_a: GO:0045616 {is_inferred="true"} ! regulation of keratinocyte differentiation + +[Term] +id: GO:1905716 ! negative regulation of cornification +is_a: GO:0043069 {is_inferred="true"} ! negative regulation of programmed cell death +is_a: GO:0045617 {is_inferred="true"} ! negative regulation of keratinocyte differentiation +is_a: GO:1905715 {is_inferred="true"} ! regulation of cornification + +[Term] +id: GO:1905717 ! positive regulation of cornification +is_a: GO:0043068 {is_inferred="true"} ! positive regulation of programmed cell death +is_a: GO:0045618 {is_inferred="true"} ! positive regulation of keratinocyte differentiation +is_a: GO:1905715 {is_inferred="true"} ! regulation of cornification + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37224 | termgenie | 2016-11-24 06:44:00 -0800 (Thu, 24 Nov 2016) | 2 lines TermGenie commit for user: vw reviewed by pr changes in entailments ------------------------------------------------------------------------ r37222 | davidos | 2016-11-24 04:29:52 -0800 (Thu, 24 Nov 2016) | 1 line fixed duplicate defs (Add check for identical definitions in ontology file? (#12815)) changes in entailments ------------------------------------------------------------------------ r37220 | mcourtot | 2016-11-24 01:12:59 -0800 (Thu, 24 Nov 2016) | 1 line fixed duplicate def - closes https://github.com/geneontology/go-ontology/issues/12817 changes in entailments ------------------------------------------------------------------------ r37215 | tberardi | 2016-11-23 16:43:36 -0800 (Wed, 23 Nov 2016) | 1 line Fine. Added back the technically incorrect former primary term name of the merged term because of Jenkins complaint about Missing primary label for merged term: delta5-delta2,4-dienoyl-CoA isomerase activity GO:0008416 changes in entailments ------------------------------------------------------------------------ r37210 | tberardi | 2016-11-23 14:54:19 -0800 (Wed, 23 Nov 2016) | 1 line cleaning up duplicate definitions part 2 changes in entailments ------------------------------------------------------------------------ r37208 | tberardi | 2016-11-23 14:12:10 -0800 (Wed, 23 Nov 2016) | 1 line cleaning up duplicate definitions changes in entailments ------------------------------------------------------------------------ r37206 | tberardi | 2016-11-23 12:35:37 -0800 (Wed, 23 Nov 2016) | 1 line GH12802 Update of EC mappings - closed changes in entailments ------------------------------------------------------------------------ r37203 | mcourtot | 2016-11-23 08:39:56 -0800 (Wed, 23 Nov 2016) | 1 line fixed few duplicate defs changes in entailments ------------------------------------------------------------------------ r37201 | mcourtot | 2016-11-23 08:29:34 -0800 (Wed, 23 Nov 2016) | 1 line dded is a parent for GO:0000799 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37201) +++ go_inferences.obo (working copy) @@ -912,7 +912,6 @@ [Term] id: GO:0000797 ! condensin core heterodimer -is_a: GO:0043234 {is_inferred="true"} ! protein complex is_a: GO:0044427 {is_inferred="true"} ! chromosomal part [Term] @@ -922,7 +921,6 @@ [Term] id: GO:0000799 ! nuclear condensin complex -is_a: GO:0000796 {is_inferred="true"} ! condensin complex is_a: GO:0044454 {is_inferred="true"} ! nuclear chromosome part [Term] ------------------------------------------------------------------------ r37191 | mcourtot | 2016-11-23 06:57:10 -0800 (Wed, 23 Nov 2016) | 1 line fixed few duplicate defs changes in entailments ------------------------------------------------------------------------ r37189 | mcourtot | 2016-11-23 06:52:50 -0800 (Wed, 23 Nov 2016) | 1 line fixed few duplicate defs changes in entailments ------------------------------------------------------------------------ r37188 | davidos | 2016-11-23 06:48:27 -0800 (Wed, 23 Nov 2016) | 1 line Synpase: Annotation of mitochondrial Ca2+ pumps/antiporters #63 - partially fixed. Will do remainder in TG changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37188) +++ go_inferences.obo (working copy) @@ -31532,8 +31532,9 @@ is_a: GO:0045203 {is_inferred="true"} ! integral component of cell outer membrane [Term] -id: GO:0036444 ! calcium ion transmembrane import into mitochondrion +id: GO:0036444 ! mitochondrial calcium uptake is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transport +is_a: GO:0060401 {is_inferred="true"} ! cytosolic calcium ion transport is_a: GO:0070509 {is_inferred="true"} ! calcium ion import is_a: GO:0070588 {is_inferred="true"} ! calcium ion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -62915,6 +62916,13 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] +id: GO:0099093 ! mitochondrial calcium release +is_a: GO:0006851 {is_inferred="true"} ! mitochondrial calcium ion transport +is_a: GO:0051209 {is_inferred="true"} ! release of sequestered calcium ion into cytosol +is_a: GO:1901660 {is_inferred="true"} ! calcium ion export +is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport + +[Term] id: GO:0099094 ! ligand-gated cation channel activity is_a: GO:0005261 {is_inferred="true"} ! cation channel activity is_a: GO:0015276 {is_inferred="true"} ! ligand-gated ion channel activity ------------------------------------------------------------------------ r37186 | paola | 2016-11-23 06:16:53 -0800 (Wed, 23 Nov 2016) | 2 lines Removed RO stanzas changes in entailments ------------------------------------------------------------------------ r37183 | mcourtot | 2016-11-23 06:06:01 -0800 (Wed, 23 Nov 2016) | 1 line fixed few duplicate defs changes in entailments ------------------------------------------------------------------------ r37177 | paola | 2016-11-23 03:53:01 -0800 (Wed, 23 Nov 2016) | 2 lines Removed RO stanzas changes in entailments ------------------------------------------------------------------------ r37172 | tberardi | 2016-11-22 16:24:30 -0800 (Tue, 22 Nov 2016) | 1 line GH12803 cortical dynamic polarity patch - closed changes in entailments ------------------------------------------------------------------------ r37170 | tberardi | 2016-11-22 15:25:40 -0800 (Tue, 22 Nov 2016) | 1 line GH12766 Review MF term GO:0050827 toxin receptor binding - removed synonyms changes in entailments ------------------------------------------------------------------------ r37168 | tberardi | 2016-11-22 15:05:17 -0800 (Tue, 22 Nov 2016) | 1 line GH12797 def of cellular localization, odd - closed changes in entailments ------------------------------------------------------------------------ r37166 | davidos | 2016-11-22 14:38:09 -0800 (Tue, 22 Nov 2016) | 1 line More work on viralzone terms (cleanup). (New phage terms mapping to SPKW/ViralZone #11426). Fixed bad logical def on pH gated chloride channel changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37166) +++ go_inferences.obo (working copy) @@ -4878,14 +4878,9 @@ [Term] id: GO:0005224 ! ATP-binding and phosphorylation-dependent chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] -id: GO:0005229 ! intracellular calcium activated chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity - -[Term] id: GO:0005242 ! inward rectifier potassium channel activity is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity @@ -4894,10 +4889,6 @@ is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity [Term] -id: GO:0005247 ! voltage-gated chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity - -[Term] id: GO:0005274 ! allantoin uptake transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity @@ -8819,7 +8810,6 @@ [Term] id: GO:0008068 ! extracellular-glutamate-gated chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] @@ -17389,7 +17379,6 @@ [Term] id: GO:0016934 ! extracellular-glycine-gated chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] @@ -18120,7 +18109,6 @@ [Term] id: GO:0019182 ! histamine-gated chloride channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] @@ -20490,13 +20478,13 @@ [Term] id: GO:0022851 ! GABA-gated chloride ion channel activity +is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity is_a: GO:0016917 {is_inferred="true"} ! GABA receptor activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0022852 ! glycine-gated chloride ion channel activity -is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] @@ -63020,6 +63008,7 @@ [Term] id: GO:0099509 ! regulation of presynaptic cytosolic calcium ion concentration +is_a: GO:0051480 {is_inferred="true"} ! regulation of cytosolic calcium ion concentration is_a: GO:0070050 {is_inferred="true"} ! neuron cellular homeostasis [Term] @@ -63095,6 +63084,7 @@ [Term] id: GO:0099533 ! positive regulation of presynaptic cytosolic calcium concentration +is_a: GO:0007204 {is_inferred="true"} ! positive regulation of cytosolic calcium ion concentration is_a: GO:0099509 {is_inferred="true"} ! regulation of presynaptic cytosolic calcium ion concentration [Term] @@ -63232,6 +63222,7 @@ [Term] id: GO:0099588 ! positive regulation of postsynaptic cytosolic calcium concentration +is_a: GO:0007204 {is_inferred="true"} ! positive regulation of cytosolic calcium ion concentration is_a: GO:0099566 {is_inferred="true"} ! regulation of postsynaptic cytosolic calcium ion concentration [Term] ------------------------------------------------------------------------ r37163 | dph | 2016-11-22 10:53:25 -0800 (Tue, 22 Nov 2016) | 2 lines Changed autolysosome to lysosome in the chaperone-mediated authophagy axioms. changes in entailments ------------------------------------------------------------------------ r37159 | dph | 2016-11-22 06:50:03 -0800 (Tue, 22 Nov 2016) | 2 lines Added autolysosome as a participant in chaperone-mediated autophagy. changes in entailments ------------------------------------------------------------------------ r37157 | dph | 2016-11-22 06:03:03 -0800 (Tue, 22 Nov 2016) | 2 lines GH12792-closed changes in entailments ------------------------------------------------------------------------ r37151 | paola | 2016-11-22 03:15:40 -0800 (Tue, 22 Nov 2016) | 2 lines Removed RO stanzas changes in entailments ------------------------------------------------------------------------ r37148 | paola | 2016-11-22 03:04:06 -0800 (Tue, 22 Nov 2016) | 2 lines Removed RO stanzas changes in entailments ------------------------------------------------------------------------ r37140 | tberardi | 2016-11-21 13:14:45 -0800 (Mon, 21 Nov 2016) | 1 line fixed negative/positive regulation of regulation of X terms to be just regulation of x terms, were ROBQ terms added through TermGenie changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37140) +++ go_inferences.obo (working copy) @@ -69208,7 +69208,6 @@ is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway -is_a: GO:1905709 {is_inferred="true"} ! negative regulation of regulation of membrane permeability is_a: GO:2001234 {is_inferred="true"} ! negative regulation of apoptotic signaling pathway [Term] @@ -69216,7 +69215,6 @@ is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway -is_a: GO:1905710 {is_inferred="true"} ! positive regulation of regulation of membrane permeability is_a: GO:2001235 {is_inferred="true"} ! positive regulation of apoptotic signaling pathway [Term] @@ -92207,16 +92205,6 @@ is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus [Term] -id: GO:1905709 ! negative regulation of regulation of membrane permeability -is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process -is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality - -[Term] -id: GO:1905710 ! positive regulation of regulation of membrane permeability -is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process -is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality - -[Term] id: GO:1905711 ! response to phosphatidylethanolamine is_a: GO:0033993 {is_inferred="true"} ! response to lipid is_a: GO:0046683 {is_inferred="true"} ! response to organophosphorus ------------------------------------------------------------------------ r37138 | termgenie | 2016-11-21 13:05:32 -0800 (Mon, 21 Nov 2016) | 3 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37138) +++ go_inferences.obo (working copy) @@ -92217,6 +92217,18 @@ is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality [Term] +id: GO:1905711 ! response to phosphatidylethanolamine +is_a: GO:0033993 {is_inferred="true"} ! response to lipid +is_a: GO:0046683 {is_inferred="true"} ! response to organophosphorus +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound + +[Term] +id: GO:1905712 ! cellular response to phosphatidylethanolamine +is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:1905711 {is_inferred="true"} ! response to phosphatidylethanolamine + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37133 | termgenie | 2016-11-21 09:58:24 -0800 (Mon, 21 Nov 2016) | 2 lines TermGenie commit for user: pg reviewed by tb https://github.com/geneontology/go-ontology/issues/12806 changes in entailments ------------------------------------------------------------------------ r37128 | davidos | 2016-11-21 08:46:35 -0800 (Mon, 21 Nov 2016) | 1 line Fixed myosin phosphatase regulator activity logical def + related logical defs to => correct inferred classification changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37128) +++ go_inferences.obo (working copy) @@ -17399,8 +17399,7 @@ [Term] id: GO:0017020 ! myosin phosphatase regulator activity -is_a: GO:0004721 {is_inferred="true"} ! phosphoprotein phosphatase activity -is_a: GO:0030234 {is_inferred="true"} ! enzyme regulator activity +is_a: GO:0019888 {is_inferred="true"} ! protein phosphatase regulator activity [Term] id: GO:0017038 ! protein import @@ -18143,9 +18142,20 @@ [Term] id: GO:0019209 ! kinase activator activity +is_a: GO:0008047 {is_inferred="true"} ! enzyme activator activity is_a: GO:0019207 {is_inferred="true"} ! kinase regulator activity [Term] +id: GO:0019211 ! phosphatase activator activity +is_a: GO:0008047 {is_inferred="true"} ! enzyme activator activity +is_a: GO:0019208 {is_inferred="true"} ! phosphatase regulator activity + +[Term] +id: GO:0019212 ! phosphatase inhibitor activity +is_a: GO:0004857 {is_inferred="true"} ! enzyme inhibitor activity +is_a: GO:0019208 {is_inferred="true"} ! phosphatase regulator activity + +[Term] id: GO:0019216 ! regulation of lipid metabolic process is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process @@ -20034,6 +20044,10 @@ is_a: GO:0046451 {is_inferred="true"} ! diaminopimelate metabolic process [Term] +id: GO:0019888 ! protein phosphatase regulator activity +is_a: GO:0019208 {is_inferred="true"} ! phosphatase regulator activity + +[Term] id: GO:0019889 ! pteridine metabolic process is_a: GO:0042558 {is_inferred="true"} ! pteridine-containing compound metabolic process @@ -57255,6 +57269,11 @@ is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] +id: GO:0072542 ! protein phosphatase activator activity +is_a: GO:0019211 {is_inferred="true"} ! phosphatase activator activity +is_a: GO:0019888 {is_inferred="true"} ! protein phosphatase regulator activity + +[Term] id: GO:0072544 ! L-DOPA binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding ------------------------------------------------------------------------ r37121 | paola | 2016-11-21 08:15:46 -0800 (Mon, 21 Nov 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - closed - added taxon rules to ‘cilium’ and ‘cilium assembly’ changes in entailments ------------------------------------------------------------------------ r37121 | paola | 2016-11-21 08:15:46 -0800 (Mon, 21 Nov 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - closed - added taxon rules to ‘cilium’ and ‘cilium assembly’ changes in entailments ------------------------------------------------------------------------ r37117 | paola | 2016-11-21 07:09:39 -0800 (Mon, 21 Nov 2016) | 2 lines Deleting ghost RO stanzas changes in entailments ------------------------------------------------------------------------ r37115 | paola | 2016-11-21 06:42:46 -0800 (Mon, 21 Nov 2016) | 3 lines GH some synonyms for "epithelial cilium movement" terms #12804 - closed - added synonyms, see ticket for details changes in entailments ------------------------------------------------------------------------ r37113 | paola | 2016-11-21 06:17:09 -0800 (Mon, 21 Nov 2016) | 3 lines GH NTRs for ciliary CC terms: paraflagellar rod and mastigoneme #12733 - closed - added taxon rule to ‘mastigoneme’. changes in entailments ------------------------------------------------------------------------ r37111 | davidos | 2016-11-21 05:16:16 -0800 (Mon, 21 Nov 2016) | 1 line tidying up to fix build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37111) +++ go_inferences.obo (working copy) @@ -4836,6 +4836,10 @@ is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity [Term] +id: GO:0004857 ! enzyme inhibitor activity +is_a: GO:0030234 {is_inferred="true"} ! enzyme regulator activity + +[Term] id: GO:0004879 ! RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity @@ -4848,6 +4852,10 @@ is_a: GO:0038023 {is_inferred="true"} ! signaling receptor activity [Term] +id: GO:0004972 ! NMDA glutamate receptor activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity + +[Term] id: GO:0004993 ! G-protein coupled serotonin receptor activity is_a: GO:0008227 {is_inferred="true"} ! G-protein coupled amine receptor activity is_a: GO:0099589 {is_inferred="true"} ! serotonin receptor activity @@ -4871,6 +4879,7 @@ [Term] id: GO:0005224 ! ATP-binding and phosphorylation-dependent chloride channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0005229 ! intracellular calcium activated chloride channel activity @@ -4877,6 +4886,14 @@ is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity [Term] +id: GO:0005242 ! inward rectifier potassium channel activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity + +[Term] +id: GO:0005246 ! calcium channel regulator activity +is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity + +[Term] id: GO:0005247 ! voltage-gated chloride channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity @@ -8467,6 +8484,10 @@ is_a: GO:0061097 {is_inferred="true"} ! regulation of protein tyrosine kinase activity [Term] +id: GO:0007186 ! G-protein coupled receptor signaling pathway +is_a: GO:0007165 {is_inferred="true"} ! signal transduction + +[Term] id: GO:0007194 ! negative regulation of adenylate cyclase activity is_a: GO:0031280 {is_inferred="true"} ! negative regulation of cyclase activity is_a: GO:0045761 {is_inferred="true"} ! regulation of adenylate cyclase activity @@ -8799,6 +8820,7 @@ [Term] id: GO:0008068 ! extracellular-glutamate-gated chloride channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0008069 ! dorsal/ventral axis specification, ovarian follicular epithelium @@ -8850,6 +8872,11 @@ is_a: GO:0005506 {is_inferred="true"} ! iron ion binding [Term] +id: GO:0008200 ! ion channel inhibitor activity +is_a: GO:0016248 {is_inferred="true"} ! channel inhibitor activity +is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity + +[Term] id: GO:0008201 ! heparin binding is_a: GO:0005539 {is_inferred="true"} ! glycosaminoglycan binding is_a: GO:0043168 {is_inferred="true"} ! anion binding @@ -14296,6 +14323,10 @@ is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] +id: GO:0014069 ! postsynaptic density +is_a: GO:0099572 {is_inferred="true"} ! postsynaptic specialization + +[Term] id: GO:0014070 ! response to organic cyclic compound is_a: GO:0010033 {is_inferred="true"} ! response to organic substance @@ -15108,10 +15139,25 @@ is_a: GO:0015267 {is_inferred="true"} ! channel activity [Term] +id: GO:0015276 ! ligand-gated ion channel activity +is_a: GO:0005216 {is_inferred="true"} ! ion channel activity +is_a: GO:0022834 {is_inferred="true"} ! ligand-gated channel activity + +[Term] +id: GO:0015277 ! kainate selective glutamate receptor activity +is_a: GO:0005267 {is_inferred="true"} ! potassium channel activity +is_a: GO:0005272 {is_inferred="true"} ! sodium channel activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity + +[Term] id: GO:0015278 ! calcium-release channel activity is_a: GO:0099604 {is_inferred="true"} ! ligand-gated calcium channel activity [Term] +id: GO:0015280 ! ligand-gated sodium channel activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity + +[Term] id: GO:0015284 ! fructose uniporter activity is_a: GO:0005353 {is_inferred="true"} ! fructose transmembrane transporter activity @@ -15215,6 +15261,10 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] +id: GO:0015459 ! potassium channel regulator activity +is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity + +[Term] id: GO:0015483 ! long-chain fatty acid transporting porin activity is_a: GO:0005253 {is_inferred="true"} ! anion channel activity is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity @@ -17295,6 +17345,10 @@ is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] +id: GO:0016557 ! peroxisome membrane biogenesis +is_a: GO:0044091 {is_inferred="true"} ! membrane biogenesis + +[Term] id: GO:0016558 ! protein import into peroxisome matrix is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization @@ -17336,6 +17390,7 @@ [Term] id: GO:0016934 ! extracellular-glycine-gated chloride channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0017015 ! regulation of transforming growth factor beta receptor signaling pathway @@ -17343,6 +17398,11 @@ is_a: GO:1903844 {is_inferred="true"} ! regulation of cellular response to transforming growth factor beta stimulus [Term] +id: GO:0017020 ! myosin phosphatase regulator activity +is_a: GO:0004721 {is_inferred="true"} ! phosphoprotein phosphatase activity +is_a: GO:0030234 {is_inferred="true"} ! enzyme regulator activity + +[Term] id: GO:0017038 ! protein import is_a: GO:0015031 {is_inferred="true"} ! protein transport @@ -17418,6 +17478,10 @@ is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] +id: GO:0017146 ! NMDA selective glutamate receptor complex +is_a: GO:0034703 {is_inferred="true"} ! cation channel complex + +[Term] id: GO:0017148 ! negative regulation of translation is_a: GO:0006417 {is_inferred="true"} ! regulation of translation is_a: GO:0010629 {is_inferred="true"} ! negative regulation of gene expression @@ -18058,6 +18122,7 @@ [Term] id: GO:0019182 ! histamine-gated chloride channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0019183 ! histamine-gated chloride channel complex @@ -18077,6 +18142,10 @@ is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] +id: GO:0019209 ! kinase activator activity +is_a: GO:0019207 {is_inferred="true"} ! kinase regulator activity + +[Term] id: GO:0019216 ! regulation of lipid metabolic process is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process @@ -20409,10 +20478,12 @@ id: GO:0022851 ! GABA-gated chloride ion channel activity is_a: GO:0016917 {is_inferred="true"} ! GABA receptor activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0022852 ! glycine-gated chloride ion channel activity is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity +is_a: GO:0099095 {is_inferred="true"} ! ligand-gated anion channel activity [Term] id: GO:0022858 ! alanine transmembrane transporter activity @@ -20901,6 +20972,11 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] +id: GO:0030295 ! protein kinase activator activity +is_a: GO:0019209 {is_inferred="true"} ! kinase activator activity +is_a: GO:0019887 {is_inferred="true"} ! protein kinase regulator activity + +[Term] id: GO:0030297 ! transmembrane receptor protein tyrosine kinase activator activity is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity @@ -21199,6 +21275,15 @@ is_a: GO:0099602 {is_inferred="true"} ! neurotransmitter receptor regulator activity [Term] +id: GO:0030549 ! acetylcholine receptor activator activity +is_a: GO:0030546 {is_inferred="true"} ! receptor activator activity +is_a: GO:0030548 {is_inferred="true"} ! acetylcholine receptor regulator activity + +[Term] +id: GO:0030550 ! acetylcholine receptor inhibitor activity +is_a: GO:0030548 {is_inferred="true"} ! acetylcholine receptor regulator activity + +[Term] id: GO:0030551 ! cyclic nucleotide binding is_a: GO:0000166 {is_inferred="true"} ! nucleotide binding @@ -23893,6 +23978,10 @@ is_a: GO:0006997 {is_inferred="true"} ! nucleus organization [Term] +id: GO:0032127 ! dense core granule membrane +is_a: GO:0030667 {is_inferred="true"} ! secretory granule membrane + +[Term] id: GO:0032130 ! medial membrane band assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly @@ -26379,6 +26468,11 @@ is_a: GO:0010257 {is_inferred="true"} ! NADH dehydrogenase complex assembly [Term] +id: GO:0032983 ! kainate selective glutamate receptor complex +is_a: GO:0034705 {is_inferred="true"} ! potassium channel complex +is_a: GO:0034706 {is_inferred="true"} ! sodium channel complex + +[Term] id: GO:0032984 ! macromolecular complex disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly @@ -29090,6 +29184,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0034414 ! tRNA 3'-trailer cleavage, endonucleolytic +is_a: GO:1905267 {is_inferred="true"} ! endonucleolytic cleavage involved in tRNA processing + +[Term] id: GO:0034418 ! urate biosynthetic process is_a: GO:0046415 {is_inferred="true"} ! urate metabolic process is_a: GO:0072522 {is_inferred="true"} ! purine-containing compound biosynthetic process @@ -30092,6 +30190,7 @@ [Term] id: GO:0035424 ! MAPK import into nucleus involved in innate immune response is_a: GO:0000189 {is_inferred="true"} ! MAPK import into nucleus +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] id: GO:0035428 ! hexose transmembrane transport @@ -33364,6 +33463,10 @@ is_a: GO:0045612 {is_inferred="true"} ! positive regulation of hemocyte differentiation [Term] +id: GO:0042699 ! follicle-stimulating hormone signaling pathway +is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism + +[Term] id: GO:0042701 ! progesterone secretion is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism @@ -35823,6 +35926,10 @@ is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization [Term] +id: GO:0044091 ! membrane biogenesis +is_a: GO:0044085 {is_inferred="true"} ! cellular component biogenesis + +[Term] id: GO:0044092 ! negative regulation of molecular function is_a: GO:0065009 {is_inferred="true"} ! regulation of molecular function @@ -37081,6 +37188,10 @@ is_a: GO:0046204 {is_inferred="true"} ! nor-spermidine metabolic process [Term] +id: GO:0045313 ! rhabdomere membrane biogenesis +is_a: GO:0044091 {is_inferred="true"} ! membrane biogenesis + +[Term] id: GO:0045314 ! regulation of compound eye photoreceptor development is_a: GO:0042478 {is_inferred="true"} ! regulation of eye photoreceptor cell development @@ -51987,6 +52098,10 @@ is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] +id: GO:0070062 ! extracellular exosome +is_a: GO:1903561 {is_inferred="true"} ! extracellular vesicle + +[Term] id: GO:0070070 ! proton-transporting V-type ATPase complex assembly is_a: GO:0070071 {is_inferred="true"} ! proton-transporting two-sector ATPase complex assembly @@ -56310,6 +56425,7 @@ [Term] id: GO:0072101 ! specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0061216 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter involved in mesonephros development [Term] @@ -56855,12 +56971,13 @@ [Term] id: GO:0072411 ! signal transduction involved in meiotic cell cycle checkpoint -is_a: GO:0022414 {is_inferred="true"} ! reproductive process is_a: GO:0072395 {is_inferred="true"} ! signal transduction involved in cell cycle checkpoint +is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] id: GO:0072413 ! signal transduction involved in mitotic cell cycle checkpoint is_a: GO:0072395 {is_inferred="true"} ! signal transduction involved in cell cycle checkpoint +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:0072415 ! detection of stimulus involved in spindle checkpoint @@ -57240,8 +57357,8 @@ [Term] id: GO:0072684 ! mitochondrial tRNA 3'-trailer cleavage, endonucleolytic +is_a: GO:0000959 {is_inferred="true"} ! mitochondrial RNA metabolic process is_a: GO:0034414 {is_inferred="true"} ! tRNA 3'-trailer cleavage, endonucleolytic -is_a: GO:1990180 {is_inferred="true"} ! mitochondrial tRNA 3'-end processing [Term] id: GO:0072691 ! initiation of premeiotic DNA replication @@ -62068,6 +62185,7 @@ [Term] id: GO:0098892 ! extrinsic component of postsynaptic specialization membrane +is_a: GO:0044422 {is_inferred="true"} ! organelle part is_a: GO:0098890 {is_inferred="true"} ! extrinsic component of postsynaptic membrane [Term] @@ -62102,8 +62220,10 @@ [Term] id: GO:0098899 ! spine apparatus lumen -is_a: GO:0034592 {is_inferred="true"} ! synaptic vesicle lumen +is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0044463 {is_inferred="true"} ! cell projection part +is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic vesicle lumen +is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] id: GO:0098900 ! regulation of action potential @@ -62298,6 +62418,7 @@ [Term] id: GO:0098948 ! intrinsic component of postsynaptic specialization membrane +is_a: GO:0044422 {is_inferred="true"} ! organelle part is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane [Term] @@ -62384,7 +62505,6 @@ [Term] id: GO:0098966 ! perisynaptic extracellular matrix is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044456 {is_inferred="true"} ! synapse part [Term] id: GO:0098967 ! exocytic insertion of neurotransmitter receptor to postsynaptic membrane @@ -62776,6 +62896,84 @@ is_a: GO:0032439 {is_inferred="true"} ! endosome localization [Term] +id: GO:0099091 ! postsynaptic specialization, intracellular component +is_a: GO:0044422 {is_inferred="true"} ! organelle part +is_a: GO:0044456 {is_inferred="true"} ! synapse part +is_a: GO:0044464 {is_inferred="true"} ! cell part + +[Term] +id: GO:0099092 ! postsynaptic density, intracellular component +is_a: GO:0044422 {is_inferred="true"} ! organelle part +is_a: GO:0044456 {is_inferred="true"} ! synapse part +is_a: GO:0044464 {is_inferred="true"} ! cell part + +[Term] +id: GO:0099094 ! ligand-gated cation channel activity +is_a: GO:0005261 {is_inferred="true"} ! cation channel activity +is_a: GO:0015276 {is_inferred="true"} ! ligand-gated ion channel activity +is_a: GO:0022890 {is_inferred="true"} ! inorganic cation transmembrane transporter activity + +[Term] +id: GO:0099095 ! ligand-gated anion channel activity +is_a: GO:0005253 {is_inferred="true"} ! anion channel activity +is_a: GO:0015103 {is_inferred="true"} ! inorganic anion transmembrane transporter activity +is_a: GO:0015276 {is_inferred="true"} ! ligand-gated ion channel activity + +[Term] +id: GO:0099097 ! prospore membrane biogenesis +is_a: GO:0044091 {is_inferred="true"} ! membrane biogenesis + +[Term] +id: GO:0099099 ! G-protein gated ion channel activity +is_a: GO:0005216 {is_inferred="true"} ! ion channel activity + +[Term] +id: GO:0099100 ! G-protein gated cation channel activity +is_a: GO:0005261 {is_inferred="true"} ! cation channel activity +is_a: GO:0022890 {is_inferred="true"} ! inorganic cation transmembrane transporter activity +is_a: GO:0099099 {is_inferred="true"} ! G-protein gated ion channel activity + +[Term] +id: GO:0099101 ! G-protein gated potassium channel activity +is_a: GO:0005267 {is_inferred="true"} ! potassium channel activity +is_a: GO:0099100 {is_inferred="true"} ! G-protein gated cation channel activity + +[Term] +id: GO:0099102 ! G-protein gated potassium channel activity involved in regulation of postsynaptic membrane potential +is_a: GO:0099101 {is_inferred="true"} ! G-protein gated potassium channel activity + +[Term] +id: GO:0099103 ! channel activator activity +is_a: GO:0016247 {is_inferred="true"} ! channel regulator activity + +[Term] +id: GO:0099104 ! potassium channel activator activity +is_a: GO:0015459 {is_inferred="true"} ! potassium channel regulator activity +is_a: GO:0099103 {is_inferred="true"} ! channel activator activity + +[Term] +id: GO:0099105 ! ion channel modulating, G-protein coupled receptor signaling pathway +is_a: GO:0007186 {is_inferred="true"} ! G-protein coupled receptor signaling pathway + +[Term] +id: GO:0099106 ! ion channel regulator activity +is_a: GO:0016247 {is_inferred="true"} ! channel regulator activity + +[Term] +id: GO:0099107 ! ion channel regulator activity involved in G-protein coupled receptor signaling pathway +is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity +is_a: GO:0099106 {is_inferred="true"} ! ion channel regulator activity + +[Term] +id: GO:0099108 ! potassium channel activator activity involved in G-protein coupled receptor signaling pathway +is_a: GO:0099104 {is_inferred="true"} ! potassium channel activator activity +is_a: GO:0099107 {is_inferred="true"} ! ion channel regulator activity involved in G-protein coupled receptor signaling pathway + +[Term] +id: GO:0099109 ! potassium channel activating, G-protein coupled receptor signaling pathway +is_a: GO:0099105 {is_inferred="true"} ! ion channel modulating, G-protein coupled receptor signaling pathway + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -62945,6 +63143,10 @@ is_a: GO:1905114 {is_inferred="true"} ! cell surface receptor signaling pathway involved in cell-cell signaling [Term] +id: GO:0099566 ! regulation of postsynaptic cytosolic calcium ion concentration +is_a: GO:0051480 {is_inferred="true"} ! regulation of cytosolic calcium ion concentration + +[Term] id: GO:0099567 ! calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration is_a: GO:0099510 {is_inferred="true"} ! calcium ion binding involved in regulation of cytosolic calcium ion concentration @@ -62964,6 +63166,7 @@ [Term] id: GO:0099572 ! postsynaptic specialization is_a: GO:0044456 {is_inferred="true"} ! synapse part +is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] id: GO:0099574 ! regulation of protein catabolic process at synapse, modulating synaptic transmission @@ -63009,6 +63212,10 @@ is_a: GO:0098657 {is_inferred="true"} ! import into cell [Term] +id: GO:0099588 ! positive regulation of postsynaptic cytosolic calcium concentration +is_a: GO:0099566 {is_inferred="true"} ! regulation of postsynaptic cytosolic calcium ion concentration + +[Term] id: GO:0099601 ! regulation of neurotransmitter receptor activity is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity @@ -63020,7 +63227,7 @@ id: GO:0099604 ! ligand-gated calcium channel activity is_a: GO:0004888 {is_inferred="true"} ! transmembrane signaling receptor activity is_a: GO:0005262 {is_inferred="true"} ! calcium channel activity -is_a: GO:0015276 {is_inferred="true"} ! ligand-gated ion channel activity +is_a: GO:0099094 {is_inferred="true"} ! ligand-gated cation channel activity [Term] id: GO:0099606 ! microtubule plus-end directed mitotic chromosome migration @@ -63078,10 +63285,12 @@ [Term] id: GO:0099633 ! protein localization to postsynaptic specialization membrane +is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle is_a: GO:1903539 {is_inferred="true"} ! protein localization to postsynaptic membrane [Term] id: GO:0099634 ! postsynaptic specialization membrane +is_a: GO:0044422 {is_inferred="true"} ! organelle part is_a: GO:0097060 {is_inferred="true"} ! synaptic membrane [Term] @@ -75892,7 +76101,6 @@ id: GO:1902402 ! signal transduction involved in mitotic DNA damage checkpoint is_a: GO:0072422 {is_inferred="true"} ! signal transduction involved in DNA damage checkpoint is_a: GO:1902403 {is_inferred="true"} ! signal transduction involved in mitotic DNA integrity checkpoint -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:1902403 ! signal transduction involved in mitotic DNA integrity checkpoint @@ -75964,6 +76172,7 @@ [Term] id: GO:1902420 ! signal transduction involved in Dma1-dependent checkpoint is_a: GO:0007165 {is_inferred="true"} ! signal transduction +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:1902421 ! hydrogen metabolic process @@ -82721,6 +82930,7 @@ [Term] id: GO:1903822 ! signal transduction involved in morphogenesis checkpoint is_a: GO:0007165 {is_inferred="true"} ! signal transduction +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:1903823 ! telomere single strand break repair @@ -87426,17 +87636,17 @@ [Term] id: GO:1904782 ! negative regulation of NMDA glutamate receptor activity -is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity is_a: GO:1900450 {is_inferred="true"} ! negative regulation of glutamate receptor signaling pathway is_a: GO:2000272 {is_inferred="true"} ! negative regulation of receptor activity is_a: GO:2000310 {is_inferred="true"} ! regulation of N-methyl-D-aspartate selective glutamate receptor activity +is_a: GO:2001258 {is_inferred="true"} ! negative regulation of cation channel activity [Term] id: GO:1904783 ! positive regulation of NMDA glutamate receptor activity -is_a: GO:0032414 {is_inferred="true"} ! positive regulation of ion transmembrane transporter activity is_a: GO:1900451 {is_inferred="true"} ! positive regulation of glutamate receptor signaling pathway is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity is_a: GO:2000310 {is_inferred="true"} ! regulation of N-methyl-D-aspartate selective glutamate receptor activity +is_a: GO:2001259 {is_inferred="true"} ! positive regulation of cation channel activity [Term] id: GO:1904784 ! NLRP1 inflammasome complex assembly @@ -94612,9 +94822,9 @@ [Term] id: GO:2000310 ! regulation of N-methyl-D-aspartate selective glutamate receptor activity -is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity is_a: GO:1900449 {is_inferred="true"} ! regulation of glutamate receptor signaling pathway +is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity [Term] id: GO:2000311 ! regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity @@ -94624,9 +94834,11 @@ [Term] id: GO:2000312 ! regulation of kainate selective glutamate receptor activity -is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity is_a: GO:0099601 {is_inferred="true"} ! regulation of neurotransmitter receptor activity is_a: GO:1900449 {is_inferred="true"} ! regulation of glutamate receptor signaling pathway +is_a: GO:1901016 {is_inferred="true"} ! regulation of potassium ion transmembrane transporter activity +is_a: GO:2000649 {is_inferred="true"} ! regulation of sodium ion transmembrane transporter activity +is_a: GO:2001257 {is_inferred="true"} ! regulation of cation channel activity [Term] id: GO:2000313 ! regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation ------------------------------------------------------------------------ r37108 | paola | 2016-11-21 03:46:44 -0800 (Mon, 21 Nov 2016) | 2 lines GH Parentage of glycoprotein binding #12580 - closed - added link 'glycoprotein binding' is_a 'protein binding' changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37108) +++ go_inferences.obo (working copy) @@ -2061,10 +2061,6 @@ is_a: GO:0009967 {is_inferred="true"} ! positive regulation of signal transduction [Term] -id: GO:0002162 ! dystroglycan binding -is_a: GO:0005515 {is_inferred="true"} ! protein binding - -[Term] id: GO:0002169 ! 3-methylcrotonyl-CoA carboxylase complex, mitochondrial is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part is_a: GO:1905202 {is_inferred="true"} ! methylcrotonoyl-CoA carboxylase complex ------------------------------------------------------------------------ r37085 | termgenie | 2016-11-18 14:17:39 -0800 (Fri, 18 Nov 2016) | 3 lines TermGenie commit for user: hbye reviewed by tb changes in entailments ------------------------------------------------------------------------ r37085 | termgenie | 2016-11-18 14:17:39 -0800 (Fri, 18 Nov 2016) | 3 lines TermGenie commit for user: hbye reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37085) +++ go_inferences.obo (working copy) @@ -22714,10 +22714,8 @@ [Term] id: GO:0031383 ! regulation of mating projection assembly -is_a: GO:0022604 {is_inferred="true"} ! regulation of cell morphogenesis -is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion -is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly +is_a: GO:1905708 {is_inferred="true"} ! regulation of cell morphogenesis involved in conjugation with cellular fusion [Term] id: GO:0031392 ! regulation of prostaglandin biosynthetic process @@ -68986,6 +68984,7 @@ is_a: GO:0010823 {is_inferred="true"} ! negative regulation of mitochondrion organization is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway +is_a: GO:1905709 {is_inferred="true"} ! negative regulation of regulation of membrane permeability is_a: GO:2001234 {is_inferred="true"} ! negative regulation of apoptotic signaling pathway [Term] @@ -68993,6 +68992,7 @@ is_a: GO:0010822 {is_inferred="true"} ! positive regulation of mitochondrion organization is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway +is_a: GO:1905710 {is_inferred="true"} ! positive regulation of regulation of membrane permeability is_a: GO:2001235 {is_inferred="true"} ! positive regulation of apoptotic signaling pathway [Term] @@ -91976,6 +91976,22 @@ is_a: GO:2001170 {is_inferred="true"} ! negative regulation of ATP biosynthetic process [Term] +id: GO:1905708 ! regulation of cell morphogenesis involved in conjugation with cellular fusion +is_a: GO:0022604 {is_inferred="true"} ! regulation of cell morphogenesis +is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion +is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus + +[Term] +id: GO:1905709 ! negative regulation of regulation of membrane permeability +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality + +[Term] +id: GO:1905710 ! positive regulation of regulation of membrane permeability +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37082 | tberardi | 2016-11-18 12:52:23 -0800 (Fri, 18 Nov 2016) | 1 line GH2801 growth cone regions - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37082) +++ go_inferences.obo (working copy) @@ -25086,10 +25086,6 @@ is_a: GO:0000139 {is_inferred="true"} ! Golgi membrane [Term] -id: GO:0032584 ! growth cone membrane -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:0032588 ! trans-Golgi network membrane is_a: GO:0000139 {is_inferred="true"} ! Golgi membrane @@ -92811,11 +92807,6 @@ is_a: GO:0031134 {is_inferred="true"} ! sister chromatid biorientation [Term] -id: GO:1990761 ! growth cone lamellipodium -is_a: GO:0044463 {is_inferred="true"} ! cell projection part -is_a: GO:0097458 {is_inferred="true"} ! neuron part - -[Term] id: GO:1990771 ! clathrin-dependent extracellular exosome endocytosis is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization ------------------------------------------------------------------------ r37079 | dph | 2016-11-18 11:41:16 -0800 (Fri, 18 Nov 2016) | 2 lines GH12794-closed changes in entailments ------------------------------------------------------------------------ r37077 | dph | 2016-11-18 11:21:56 -0800 (Fri, 18 Nov 2016) | 2 lines Added relationships between autophagy cellular components and processes and functions. GH12805-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37077) +++ go_inferences.obo (working copy) @@ -28886,6 +28886,10 @@ is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] +id: GO:0034274 ! Atg12-Atg5-Atg16 complex +is_a: GO:1990234 {is_inferred="true"} ! transferase complex + +[Term] id: GO:0034275 ! kynurenic acid metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process ------------------------------------------------------------------------ r37063 | cjm | 2016-11-17 15:03:49 -0800 (Thu, 17 Nov 2016) | 1 line null change, triggering new inferences, see https://github.com/geneontology/go-ontology/issues/12735 changes in entailments ------------------------------------------------------------------------ r37063 | cjm | 2016-11-17 15:03:49 -0800 (Thu, 17 Nov 2016) | 1 line null change, triggering new inferences, see https://github.com/geneontology/go-ontology/issues/12735 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37063) +++ go_inferences.obo (working copy) @@ -183,6 +183,7 @@ [Term] id: GO:0000053 ! argininosuccinate metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] @@ -195,10 +196,12 @@ [Term] id: GO:0000062 ! fatty-acyl-CoA binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] id: GO:0000064 ! L-ornithine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] @@ -230,23 +233,20 @@ [Term] id: GO:0000096 ! sulfur amino acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0000097 ! sulfur amino acid biosynthetic process is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0000098 ! sulfur amino acid catabolic process is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0000099 ! sulfur amino acid transmembrane transporter activity @@ -266,7 +266,10 @@ [Term] id: GO:0000105 ! histidine biosynthetic process is_a: GO:0006547 {is_inferred="true"} ! histidine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0000109 ! nucleotide-excision repair complex @@ -560,6 +563,14 @@ is_a: GO:0015216 {is_inferred="true"} ! purine nucleotide transmembrane transporter activity [Term] +id: GO:0000296 ! spermine transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport + +[Term] +id: GO:0000297 ! spermine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity + +[Term] id: GO:0000302 ! response to reactive oxygen species is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -942,15 +953,17 @@ [Term] id: GO:0000820 ! regulation of glutamine family amino acid metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process [Term] id: GO:0000821 ! regulation of arginine metabolic process is_a: GO:0000820 {is_inferred="true"} ! regulation of glutamine family amino acid metabolic process -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process [Term] +id: GO:0000822 ! inositol hexakisphosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding + +[Term] id: GO:0000835 ! ER ubiquitin ligase complex is_a: GO:0000153 {is_inferred="true"} ! cytoplasmic ubiquitin ligase complex is_a: GO:0044425 {is_inferred="true"} ! membrane part @@ -1032,6 +1045,7 @@ id: GO:0000954 ! methionine catabolic process to 3-methylthiopropanoate is_a: GO:0006633 {is_inferred="true"} ! fatty acid biosynthetic process is_a: GO:0009087 {is_inferred="true"} ! methionine catabolic process +is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process [Term] id: GO:0000957 ! mitochondrial RNA catabolic process @@ -1204,7 +1218,12 @@ is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex [Term] +id: GO:0001406 ! glycerophosphodiester transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] id: GO:0001407 ! glycerophosphodiester transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport [Term] @@ -1368,6 +1387,7 @@ [Term] id: GO:0001692 ! histamine metabolic process is_a: GO:0052803 {is_inferred="true"} ! imidazole-containing compound metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0001694 ! histamine biosynthetic process @@ -1847,7 +1867,6 @@ [Term] id: GO:0002036 ! regulation of L-glutamate transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] @@ -1854,13 +1873,11 @@ id: GO:0002037 ! negative regulation of L-glutamate transport is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0002038 ! positive regulation of L-glutamate transport is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0002044 ! blood vessel endothelial cell migration involved in intussusceptive angiogenesis @@ -1993,11 +2010,13 @@ id: GO:0002134 ! UTP binding is_a: GO:0032551 {is_inferred="true"} ! pyrimidine ribonucleoside binding is_a: GO:0032557 {is_inferred="true"} ! pyrimidine ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0002135 ! CTP binding is_a: GO:0032551 {is_inferred="true"} ! pyrimidine ribonucleoside binding is_a: GO:0032557 {is_inferred="true"} ! pyrimidine ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0002138 ! retinoic acid biosynthetic process @@ -2016,10 +2035,12 @@ [Term] id: GO:0002148 ! hypochlorous acid metabolic process is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process +is_a: GO:0072593 {is_inferred="true"} ! reactive oxygen species metabolic process [Term] id: GO:0002149 ! hypochlorous acid biosynthetic process is_a: GO:0002148 {is_inferred="true"} ! hypochlorous acid metabolic process +is_a: GO:1903409 {is_inferred="true"} ! reactive oxygen species biosynthetic process [Term] id: GO:0002150 ! hypochlorous acid catabolic process @@ -4879,23 +4900,34 @@ [Term] id: GO:0005290 ! L-histidine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:1901474 {is_inferred="true"} ! azole transmembrane transporter activity [Term] +id: GO:0005298 ! proline:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0005302 ! L-tyrosine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015173 {is_inferred="true"} ! aromatic amino acid transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0005304 ! L-valine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0015658 {is_inferred="true"} ! branched-chain amino acid transmembrane transporter activity [Term] +id: GO:0005308 ! creatine transmembrane transporter activity +is_a: GO:0015171 {is_inferred="true"} ! amino acid transmembrane transporter activity + +[Term] id: GO:0005309 ! creatine:sodium symporter activity -is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity -is_a: GO:0015293 {is_inferred="true"} ! symporter activity +is_a: GO:0005343 {is_inferred="true"} ! organic acid:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity [Term] id: GO:0005310 ! dicarboxylic acid transmembrane transporter activity @@ -4903,7 +4935,8 @@ [Term] id: GO:0005313 ! L-glutamate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity +is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0005315 ! inorganic phosphate transmembrane transporter activity @@ -4920,9 +4953,14 @@ [Term] id: GO:0005329 ! dopamine transmembrane transporter activity is_a: GO:0008504 {is_inferred="true"} ! monoamine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] +id: GO:0005332 ! gamma-aminobutyric acid:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0005333 ! norepinephrine transmembrane transporter activity is_a: GO:0008504 {is_inferred="true"} ! monoamine transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity @@ -4942,6 +4980,7 @@ [Term] id: GO:0005340 ! nucleotide-sulfate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015215 {is_inferred="true"} ! nucleotide transmembrane transporter activity [Term] @@ -4957,6 +4996,7 @@ id: GO:0005347 ! ATP transmembrane transporter activity is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] @@ -4985,11 +5025,17 @@ [Term] id: GO:0005368 ! taurine transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0042959 {is_inferred="true"} ! alkanesulfonate transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] +id: GO:0005369 ! taurine:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0005371 ! tricarboxylate secondary active transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015142 {is_inferred="true"} ! tricarboxylic acid transmembrane transporter activity is_a: GO:0015291 {is_inferred="true"} ! secondary active transmembrane transporter activity [Term] @@ -4997,10 +5043,26 @@ is_a: GO:0015103 {is_inferred="true"} ! inorganic anion transmembrane transporter activity [Term] +id: GO:0005456 ! CMP-N-acetylneuraminate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] +id: GO:0005460 ! UDP-glucose transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] +id: GO:0005462 ! UDP-N-acetylglucosamine transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] +id: GO:0005464 ! UDP-xylose transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] id: GO:0005471 ! ATP:ADP antiporter activity is_a: GO:0005347 {is_inferred="true"} ! ATP transmembrane transporter activity is_a: GO:0015217 {is_inferred="true"} ! ADP transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity [Term] id: GO:0005472 ! FAD carrier activity @@ -5100,8 +5162,8 @@ [Term] id: GO:0005542 ! folic acid binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0033218 {is_inferred="true"} ! amide binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -5109,6 +5171,7 @@ [Term] id: GO:0005543 ! phospholipid binding is_a: GO:0008289 {is_inferred="true"} ! lipid binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0005545 ! 1-phosphatidylinositol binding @@ -5712,6 +5775,7 @@ [Term] id: GO:0006011 ! UDP-glucose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -5853,6 +5917,7 @@ [Term] id: GO:0006047 ! UDP-N-acetylglucosamine metabolic process is_a: GO:0006040 {is_inferred="true"} ! amino sugar metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -5887,6 +5952,7 @@ [Term] id: GO:0006054 ! N-acetylneuraminate metabolic process +is_a: GO:0006040 {is_inferred="true"} ! amino sugar metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] @@ -5914,16 +5980,19 @@ [Term] id: GO:0006063 ! uronic acid metabolic process +is_a: GO:0005996 {is_inferred="true"} ! monosaccharide metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0006064 ! glucuronate catabolic process is_a: GO:0019585 {is_inferred="true"} ! glucuronate metabolic process +is_a: GO:0046365 {is_inferred="true"} ! monosaccharide catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0006065 ! UDP-glucuronate biosynthetic process is_a: GO:0009226 {is_inferred="true"} ! nucleotide-sugar biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0046398 {is_inferred="true"} ! UDP-glucuronate metabolic process [Term] @@ -6016,6 +6085,7 @@ [Term] id: GO:0006089 ! lactate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0006090 ! pyruvate metabolic process @@ -6046,7 +6116,7 @@ [Term] id: GO:0006099 ! tricarboxylic acid cycle -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006101 {is_inferred="true"} ! citrate metabolic process [Term] id: GO:0006101 ! citrate metabolic process @@ -6117,9 +6187,9 @@ [Term] id: GO:0006127 ! glycerophosphate shuttle +is_a: GO:0006072 {is_inferred="true"} ! glycerol-3-phosphate metabolic process is_a: GO:0006116 {is_inferred="true"} ! NADH oxidation is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process -is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:0006139 ! nucleobase-containing compound metabolic process @@ -6479,8 +6549,9 @@ [Term] id: GO:0006234 ! TTP biosynthetic process +is_a: GO:0009209 {is_inferred="true"} ! pyrimidine ribonucleoside triphosphate biosynthetic process +is_a: GO:0009220 {is_inferred="true"} ! pyrimidine ribonucleotide biosynthetic process is_a: GO:0046046 {is_inferred="true"} ! TTP metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] id: GO:0006235 ! dTTP biosynthetic process @@ -6813,65 +6884,56 @@ is_a: GO:0080090 {is_inferred="true"} ! regulation of primary metabolic process [Term] -id: GO:0006522 ! alanine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006523 ! alanine biosynthetic process is_a: GO:0006522 {is_inferred="true"} ! alanine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0006524 ! alanine catabolic process is_a: GO:0006522 {is_inferred="true"} ! alanine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] -id: GO:0006525 ! arginine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006526 ! arginine biosynthetic process is_a: GO:0006525 {is_inferred="true"} ! arginine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0006527 ! arginine catabolic process is_a: GO:0006525 {is_inferred="true"} ! arginine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] id: GO:0006528 ! asparagine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process [Term] id: GO:0006529 ! asparagine biosynthetic process is_a: GO:0006528 {is_inferred="true"} ! asparagine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0006530 ! asparagine catabolic process is_a: GO:0006528 {is_inferred="true"} ! asparagine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0006531 ! aspartate metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] id: GO:0006532 ! aspartate biosynthetic process is_a: GO:0006531 {is_inferred="true"} ! aspartate metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process [Term] id: GO:0006533 ! aspartate catabolic process is_a: GO:0006531 {is_inferred="true"} ! aspartate metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process [Term] +id: GO:0006534 ! cysteine metabolic process +is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process + +[Term] id: GO:0006535 ! cysteine biosynthetic process from serine is_a: GO:0006563 {is_inferred="true"} ! L-serine metabolic process is_a: GO:0019344 {is_inferred="true"} ! cysteine biosynthetic process @@ -6900,41 +6962,31 @@ is_a: GO:0006538 {is_inferred="true"} ! glutamate catabolic process [Term] -id: GO:0006541 ! glutamine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006542 ! glutamine biosynthetic process is_a: GO:0006541 {is_inferred="true"} ! glutamine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0006543 ! glutamine catabolic process is_a: GO:0006541 {is_inferred="true"} ! glutamine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] -id: GO:0006544 ! glycine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006545 ! glycine biosynthetic process is_a: GO:0006544 {is_inferred="true"} ! glycine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0006546 ! glycine catabolic process is_a: GO:0006544 {is_inferred="true"} ! glycine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] id: GO:0006547 ! histidine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0052803 {is_inferred="true"} ! imidazole-containing compound metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0006548 ! histidine catabolic process is_a: GO:0006547 {is_inferred="true"} ! histidine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0052805 {is_inferred="true"} ! imidazole-containing compound catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0006549 ! isoleucine metabolic process @@ -6949,30 +7001,28 @@ [Term] id: GO:0006551 ! leucine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0006552 ! leucine catabolic process is_a: GO:0006551 {is_inferred="true"} ! leucine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0009083 {is_inferred="true"} ! branched-chain amino acid catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] -id: GO:0006553 ! lysine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006554 ! lysine catabolic process is_a: GO:0006553 {is_inferred="true"} ! lysine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] id: GO:0006555 ! methionine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process [Term] id: GO:0006556 ! S-adenosylmethionine biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process is_a: GO:0046500 {is_inferred="true"} ! S-adenosylmethionine metabolic process +is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] id: GO:0006557 ! S-adenosylmethioninamine biosynthetic process @@ -6982,49 +7032,43 @@ [Term] id: GO:0006558 ! L-phenylalanine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process +is_a: GO:1902221 {is_inferred="true"} ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process [Term] id: GO:0006559 ! L-phenylalanine catabolic process is_a: GO:0006558 {is_inferred="true"} ! L-phenylalanine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0009074 {is_inferred="true"} ! aromatic amino acid family catabolic process +is_a: GO:1902222 {is_inferred="true"} ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process [Term] id: GO:0006560 ! proline metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] id: GO:0006561 ! proline biosynthetic process is_a: GO:0006560 {is_inferred="true"} ! proline metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0006562 ! proline catabolic process is_a: GO:0006560 {is_inferred="true"} ! proline metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] -id: GO:0006563 ! L-serine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006564 ! L-serine biosynthetic process is_a: GO:0006563 {is_inferred="true"} ! L-serine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0006565 ! L-serine catabolic process is_a: GO:0006563 {is_inferred="true"} ! L-serine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] -id: GO:0006566 ! threonine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0006567 ! threonine catabolic process is_a: GO:0006566 {is_inferred="true"} ! threonine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] id: GO:0006568 ! tryptophan metabolic process @@ -7057,12 +7101,14 @@ [Term] id: GO:0006573 ! valine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0006574 ! valine catabolic process is_a: GO:0006573 {is_inferred="true"} ! valine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0009083 {is_inferred="true"} ! branched-chain amino acid catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0006575 ! cellular modified amino acid metabolic process @@ -7086,6 +7132,7 @@ id: GO:0006580 ! ethanolamine metabolic process is_a: GO:0034308 {is_inferred="true"} ! primary alcohol metabolic process is_a: GO:0042439 {is_inferred="true"} ! ethanolamine-containing compound metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] @@ -7133,17 +7180,17 @@ [Term] id: GO:0006591 ! ornithine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0006592 ! ornithine biosynthetic process is_a: GO:0006591 {is_inferred="true"} ! ornithine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0006593 ! ornithine catabolic process is_a: GO:0006591 {is_inferred="true"} ! ornithine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0006596 ! polyamine biosynthetic process @@ -7165,12 +7212,14 @@ [Term] id: GO:0006600 ! creatine metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0006601 ! creatine biosynthetic process is_a: GO:0006600 {is_inferred="true"} ! creatine metabolic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0006602 ! creatinine catabolic process @@ -7256,6 +7305,7 @@ [Term] id: GO:0006637 ! acyl-CoA metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0035383 {is_inferred="true"} ! thioester metabolic process [Term] @@ -7298,12 +7348,12 @@ [Term] id: GO:0006653 ! 1,2-diacyl-sn-glycero-3-phosphocholine metabolic process -is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process +is_a: GO:0046470 {is_inferred="true"} ! phosphatidylcholine metabolic process [Term] id: GO:0006654 ! phosphatidic acid biosynthetic process is_a: GO:0046473 {is_inferred="true"} ! phosphatidic acid metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046474 {is_inferred="true"} ! glycerophospholipid biosynthetic process [Term] id: GO:0006655 ! phosphatidylglycerol biosynthetic process @@ -7487,6 +7537,7 @@ [Term] id: GO:0006690 ! icosanoid metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process +is_a: GO:1901568 {is_inferred="true"} ! fatty acid derivative metabolic process [Term] id: GO:0006691 ! leukotriene metabolic process @@ -7533,6 +7584,7 @@ is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process is_a: GO:0008206 {is_inferred="true"} ! bile acid metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0006700 ! C21-steroid hormone biosynthetic process @@ -7746,16 +7798,24 @@ [Term] id: GO:0006760 ! folic acid-containing compound metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0042558 {is_inferred="true"} ! pteridine-containing compound metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process [Term] id: GO:0006761 ! dihydrofolate biosynthetic process is_a: GO:0009396 {is_inferred="true"} ! folic acid-containing compound biosynthetic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046452 {is_inferred="true"} ! dihydrofolate metabolic process [Term] id: GO:0006768 ! biotin metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0006769 ! nicotinamide metabolic process @@ -7797,6 +7857,7 @@ [Term] id: GO:0006780 ! uroporphyrinogen III biosynthetic process +is_a: GO:0006779 {is_inferred="true"} ! porphyrin-containing compound biosynthetic process is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0046502 {is_inferred="true"} ! uroporphyrinogen III metabolic process @@ -7852,11 +7913,13 @@ id: GO:0006798 ! polyphosphate catabolic process is_a: GO:0006797 {is_inferred="true"} ! polyphosphate metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process +is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] id: GO:0006799 ! polyphosphate biosynthetic process is_a: GO:0006797 {is_inferred="true"} ! polyphosphate metabolic process is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process +is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] id: GO:0006801 ! superoxide metabolic process @@ -7932,6 +7995,7 @@ [Term] id: GO:0006837 ! serotonin transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015844 {is_inferred="true"} ! monoamine transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport @@ -7967,7 +8031,7 @@ [Term] id: GO:0006853 ! carnitine shuttle -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1902001 {is_inferred="true"} ! fatty acid transmembrane transport [Term] id: GO:0006857 ! oligopeptide transport @@ -8002,16 +8066,18 @@ [Term] id: GO:0006865 ! amino acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0006867 ! asparagine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport [Term] id: GO:0006868 ! glutamine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0006869 ! lipid transport @@ -8769,7 +8835,7 @@ [Term] id: GO:0008153 ! para-aminobenzoic acid biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0009073 {is_inferred="true"} ! aromatic amino acid family biosynthetic process is_a: GO:0046482 {is_inferred="true"} ! para-aminobenzoic acid metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process @@ -8790,6 +8856,7 @@ [Term] id: GO:0008201 ! heparin binding is_a: GO:0005539 {is_inferred="true"} ! glycosaminoglycan binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -8818,6 +8885,7 @@ id: GO:0008206 ! bile acid metabolic process is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0008207 ! C21-steroid hormone metabolic process @@ -8839,6 +8907,14 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] +id: GO:0008215 ! spermine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process + +[Term] +id: GO:0008216 ! spermidine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process + +[Term] id: GO:0008247 ! 1-alkyl-2-acetylglycerophosphocholine esterase complex is_a: GO:1902494 {is_inferred="true"} ! catalytic complex @@ -9005,6 +9081,10 @@ is_a: GO:0015291 {is_inferred="true"} ! secondary active transmembrane transporter activity [Term] +id: GO:0008508 ! bile acid:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0008509 ! anion transmembrane transporter activity is_a: GO:0015075 {is_inferred="true"} ! ion transmembrane transporter activity @@ -9022,10 +9102,11 @@ [Term] id: GO:0008520 ! L-ascorbate:sodium symporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity +is_a: GO:0005343 {is_inferred="true"} ! organic acid:sodium symporter activity +is_a: GO:0015145 {is_inferred="true"} ! monosaccharide transmembrane transporter activity is_a: GO:0015229 {is_inferred="true"} ! L-ascorbic acid transporter activity is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity +is_a: GO:0046943 {is_inferred="true"} ! carboxylic acid transmembrane transporter activity is_a: GO:0090482 {is_inferred="true"} ! vitamin transmembrane transporter activity [Term] @@ -9157,7 +9238,7 @@ [Term] id: GO:0008658 ! penicillin binding is_a: GO:0033218 {is_inferred="true"} ! amide binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -9232,26 +9313,23 @@ [Term] id: GO:0009072 ! aromatic amino acid family metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0009073 ! aromatic amino acid family biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0009074 ! aromatic amino acid family catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0009078 ! pyruvate family amino acid metabolic process @@ -9267,20 +9345,17 @@ [Term] id: GO:0009081 ! branched-chain amino acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process [Term] id: GO:0009082 ! branched-chain amino acid biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0009083 ! branched-chain amino acid catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0009084 ! glutamine family amino acid biosynthetic process @@ -9289,22 +9364,20 @@ [Term] id: GO:0009085 ! lysine biosynthetic process is_a: GO:0006553 {is_inferred="true"} ! lysine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0009086 ! methionine biosynthetic process +is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0006555 {is_inferred="true"} ! methionine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0009087 ! methionine catabolic process +is_a: GO:0000098 {is_inferred="true"} ! sulfur amino acid catabolic process is_a: GO:0006555 {is_inferred="true"} ! methionine metabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process [Term] id: GO:0009088 ! threonine biosynthetic process is_a: GO:0006566 {is_inferred="true"} ! threonine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process [Term] id: GO:0009089 ! lysine biosynthetic process via diaminopimelate @@ -9312,26 +9385,21 @@ [Term] id: GO:0009090 ! homoserine biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0009092 {is_inferred="true"} ! homoserine metabolic process [Term] id: GO:0009091 ! homoserine catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0009092 {is_inferred="true"} ! homoserine metabolic process [Term] -id: GO:0009092 ! homoserine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0009093 ! cysteine catabolic process +is_a: GO:0000098 {is_inferred="true"} ! sulfur amino acid catabolic process is_a: GO:0006534 {is_inferred="true"} ! cysteine metabolic process [Term] id: GO:0009094 ! L-phenylalanine biosynthetic process is_a: GO:0006558 {is_inferred="true"} ! L-phenylalanine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:1902223 {is_inferred="true"} ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process [Term] id: GO:0009097 ! isoleucine biosynthetic process @@ -9342,12 +9410,14 @@ [Term] id: GO:0009098 ! leucine biosynthetic process is_a: GO:0006551 {is_inferred="true"} ! leucine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0009082 {is_inferred="true"} ! branched-chain amino acid biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0009099 ! valine biosynthetic process is_a: GO:0006573 {is_inferred="true"} ! valine metabolic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0009082 {is_inferred="true"} ! branched-chain amino acid biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0009100 ! glycoprotein metabolic process @@ -9361,7 +9431,12 @@ [Term] id: GO:0009102 ! biotin biosynthetic process is_a: GO:0006768 {is_inferred="true"} ! biotin metabolic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0009103 ! lipopolysaccharide biosynthetic process @@ -9378,11 +9453,17 @@ [Term] id: GO:0009106 ! lipoate metabolic process is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] id: GO:0009107 ! lipoate biosynthetic process is_a: GO:0006633 {is_inferred="true"} ! fatty acid biosynthetic process is_a: GO:0009106 {is_inferred="true"} ! lipoate metabolic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0009110 ! vitamin biosynthetic process @@ -9988,6 +10069,7 @@ id: GO:0009229 ! thiamine diphosphate biosynthetic process is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0042357 {is_inferred="true"} ! thiamine diphosphate metabolic process +is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process is_a: GO:0072528 {is_inferred="true"} ! pyrimidine-containing compound biosynthetic process is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process @@ -10089,11 +10171,13 @@ [Term] id: GO:0009256 ! 10-formyltetrahydrofolate metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process is_a: GO:0046653 {is_inferred="true"} ! tetrahydrofolate metabolic process [Term] id: GO:0009257 ! 10-formyltetrahydrofolate biosynthetic process is_a: GO:0009256 {is_inferred="true"} ! 10-formyltetrahydrofolate metabolic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046654 {is_inferred="true"} ! tetrahydrofolate biosynthetic process [Term] @@ -10100,6 +10184,7 @@ id: GO:0009258 ! 10-formyltetrahydrofolate catabolic process is_a: GO:0009256 {is_inferred="true"} ! 10-formyltetrahydrofolate metabolic process is_a: GO:0009397 {is_inferred="true"} ! folic acid-containing compound catabolic process +is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process [Term] id: GO:0009259 ! ribonucleotide metabolic process @@ -10332,7 +10417,11 @@ [Term] id: GO:0009374 ! biotin binding +is_a: GO:0033218 {is_inferred="true"} ! amide binding is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding +is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding +is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] id: GO:0009375 ! ferredoxin hydrogenase complex @@ -10374,6 +10463,8 @@ is_a: GO:0006760 {is_inferred="true"} ! folic acid-containing compound metabolic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0042559 {is_inferred="true"} ! pteridine-containing compound biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0009397 ! folic acid-containing compound catabolic process @@ -10380,6 +10471,7 @@ is_a: GO:0006760 {is_inferred="true"} ! folic acid-containing compound metabolic process is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process is_a: GO:0042560 {is_inferred="true"} ! pteridine-containing compound catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] id: GO:0009398 ! FMN biosynthetic process @@ -10414,6 +10506,7 @@ [Term] id: GO:0009436 ! glyoxylate catabolic process +is_a: GO:0046185 {is_inferred="true"} ! aldehyde catabolic process is_a: GO:0046487 {is_inferred="true"} ! glyoxylate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process @@ -10420,6 +10513,7 @@ [Term] id: GO:0009437 ! carnitine metabolic process is_a: GO:0006577 {is_inferred="true"} ! amino-acid betaine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0009438 ! methylglyoxal metabolic process @@ -10439,8 +10533,13 @@ [Term] id: GO:0009441 ! glycolate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0034308 {is_inferred="true"} ! primary alcohol metabolic process [Term] +id: GO:0009445 ! putrescine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process + +[Term] id: GO:0009446 ! putrescine biosynthetic process is_a: GO:0009445 {is_inferred="true"} ! putrescine metabolic process @@ -10451,16 +10550,19 @@ [Term] id: GO:0009448 ! gamma-aminobutyric acid metabolic process is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0009449 ! gamma-aminobutyric acid biosynthetic process is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0009448 {is_inferred="true"} ! gamma-aminobutyric acid metabolic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0009450 ! gamma-aminobutyric acid catabolic process is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0009448 {is_inferred="true"} ! gamma-aminobutyric acid metabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0009503 ! thylakoid light-harvesting complex @@ -10594,32 +10696,40 @@ [Term] id: GO:0009683 ! indoleacetic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process [Term] id: GO:0009684 ! indoleacetic acid biosynthetic process +is_a: GO:0009683 {is_inferred="true"} ! indoleacetic acid metabolic process +is_a: GO:0042435 {is_inferred="true"} ! indole-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0009685 ! gibberellin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0016101 {is_inferred="true"} ! diterpenoid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0009686 ! gibberellin biosynthetic process is_a: GO:0009685 {is_inferred="true"} ! gibberellin metabolic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0016102 {is_inferred="true"} ! diterpenoid biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0009687 ! abscisic acid metabolic process +is_a: GO:0006714 {is_inferred="true"} ! sesquiterpenoid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043288 {is_inferred="true"} ! apocarotenoid metabolic process +is_a: GO:1902644 {is_inferred="true"} ! tertiary alcohol metabolic process [Term] id: GO:0009688 ! abscisic acid biosynthetic process is_a: GO:0009687 {is_inferred="true"} ! abscisic acid metabolic process +is_a: GO:0016106 {is_inferred="true"} ! sesquiterpenoid biosynthetic process +is_a: GO:0043289 {is_inferred="true"} ! apocarotenoid biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1902645 {is_inferred="true"} ! tertiary alcohol biosynthetic process [Term] id: GO:0009692 ! ethylene metabolic process @@ -10641,11 +10751,14 @@ [Term] id: GO:0009696 ! salicylic acid metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0009697 ! salicylic acid biosynthetic process is_a: GO:0009696 {is_inferred="true"} ! salicylic acid metabolic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] @@ -10782,7 +10895,7 @@ [Term] id: GO:0009759 ! indole glucosinolate biosynthetic process -is_a: GO:0016144 {is_inferred="true"} ! S-glycoside biosynthetic process +is_a: GO:0019761 {is_inferred="true"} ! glucosinolate biosynthetic process is_a: GO:0042343 {is_inferred="true"} ! indole glucosinolate metabolic process is_a: GO:0042435 {is_inferred="true"} ! indole-containing compound biosynthetic process @@ -10851,6 +10964,7 @@ id: GO:0009803 ! cinnamic acid metabolic process is_a: GO:0009698 {is_inferred="true"} ! phenylpropanoid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0009804 ! coumarin metabolic process @@ -11214,7 +11328,7 @@ [Term] id: GO:0010013 ! N-1-naphthylphthalamic acid binding is_a: GO:0033218 {is_inferred="true"} ! amide binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] @@ -11256,6 +11370,7 @@ [Term] id: GO:0010034 ! response to acetate +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010033 {is_inferred="true"} ! response to organic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -11467,12 +11582,18 @@ [Term] id: GO:0010115 ! regulation of abscisic acid biosynthetic process +is_a: GO:0019747 {is_inferred="true"} ! regulation of isoprenoid metabolic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0046890 {is_inferred="true"} ! regulation of lipid biosynthetic process +is_a: GO:1902930 {is_inferred="true"} ! regulation of alcohol biosynthetic process [Term] id: GO:0010116 ! positive regulation of abscisic acid biosynthetic process is_a: GO:0010115 {is_inferred="true"} ! regulation of abscisic acid biosynthetic process is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process +is_a: GO:0045828 {is_inferred="true"} ! positive regulation of isoprenoid metabolic process +is_a: GO:0046889 {is_inferred="true"} ! positive regulation of lipid biosynthetic process +is_a: GO:1902932 {is_inferred="true"} ! positive regulation of alcohol biosynthetic process [Term] id: GO:0010119 ! regulation of stomatal movement @@ -11503,7 +11624,10 @@ [Term] id: GO:0010124 ! phenylacetate catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0010125 ! mycothiol biosynthetic process @@ -11545,13 +11669,7 @@ [Term] id: GO:0010144 ! pyridoxal phosphate biosynthetic process from pyridoxamine -is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process -is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0042818 {is_inferred="true"} ! pyridoxamine metabolic process -is_a: GO:0046184 {is_inferred="true"} ! aldehyde biosynthetic process -is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process -is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process -is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0010146 ! fructan biosynthetic process @@ -11567,6 +11685,7 @@ [Term] id: GO:0010157 ! response to chlorate +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -11577,6 +11696,7 @@ [Term] id: GO:0010167 ! response to nitrate +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -11591,6 +11711,8 @@ [Term] id: GO:0010175 ! sphingosine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0015166 {is_inferred="true"} ! polyol transmembrane transporter activity is_a: GO:0046624 {is_inferred="true"} ! sphingolipid transporter activity @@ -11597,6 +11719,7 @@ [Term] id: GO:0010181 ! FMN binding is_a: GO:0032553 {is_inferred="true"} ! ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0010183 ! pollen tube guidance @@ -11698,6 +11821,7 @@ [Term] id: GO:0010250 ! S-methylmethionine biosynthetic process is_a: GO:0033477 {is_inferred="true"} ! S-methylmethionine metabolic process +is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process [Term] @@ -11706,8 +11830,8 @@ [Term] id: GO:0010253 ! UDP-rhamnose biosynthetic process +is_a: GO:0009226 {is_inferred="true"} ! nucleotide-sugar biosynthetic process is_a: GO:0033478 {is_inferred="true"} ! UDP-rhamnose metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] id: GO:0010254 ! nectary development @@ -11766,8 +11890,9 @@ id: GO:0010292 ! GTP:GDP antiporter activity is_a: GO:0001409 {is_inferred="true"} ! guanine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity [Term] id: GO:0010297 ! heteropolysaccharide binding @@ -11824,10 +11949,11 @@ [Term] id: GO:0010331 ! gibberellin binding is_a: GO:0019840 {is_inferred="true"} ! isoprenoid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding [Term] id: GO:0010336 ! gibberellic acid homeostasis +is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis is_a: GO:0055088 {is_inferred="true"} ! lipid homeostasis [Term] @@ -11930,6 +12056,8 @@ [Term] id: GO:0010379 ! phaseic acid biosynthetic process +is_a: GO:0016106 {is_inferred="true"} ! sesquiterpenoid biosynthetic process +is_a: GO:0043289 {is_inferred="true"} ! apocarotenoid biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] @@ -11998,7 +12126,9 @@ [Term] id: GO:0010427 ! abscisic acid binding +is_a: GO:0019840 {is_inferred="true"} ! isoprenoid binding is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding +is_a: GO:0043178 {is_inferred="true"} ! alcohol binding [Term] id: GO:0010431 ! seed maturation @@ -12017,6 +12147,7 @@ id: GO:0010439 ! regulation of glucosinolate biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process +is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process is_a: GO:1900376 {is_inferred="true"} ! regulation of secondary metabolite biosynthetic process [Term] @@ -12962,7 +13093,6 @@ [Term] id: GO:0010746 ! regulation of plasma membrane long-chain fatty acid transport -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:1903959 {is_inferred="true"} ! regulation of anion transmembrane transport is_a: GO:2000191 {is_inferred="true"} ! regulation of fatty acid transport @@ -12969,7 +13099,6 @@ [Term] id: GO:0010747 ! positive regulation of plasma membrane long-chain fatty acid transport is_a: GO:0010746 {is_inferred="true"} ! regulation of plasma membrane long-chain fatty acid transport -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport is_a: GO:2000193 {is_inferred="true"} ! positive regulation of fatty acid transport @@ -12976,7 +13105,6 @@ [Term] id: GO:0010748 ! negative regulation of plasma membrane long-chain fatty acid transport is_a: GO:0010746 {is_inferred="true"} ! regulation of plasma membrane long-chain fatty acid transport -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport is_a: GO:2000192 {is_inferred="true"} ! negative regulation of fatty acid transport @@ -13555,9 +13683,11 @@ [Term] id: GO:0010904 ! regulation of UDP-glucose catabolic process is_a: GO:0019219 {is_inferred="true"} ! regulation of nucleobase-containing compound metabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process [Term] id: GO:0010905 ! negative regulation of UDP-glucose catabolic process +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0010904 {is_inferred="true"} ! regulation of UDP-glucose catabolic process is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process is_a: GO:0045934 {is_inferred="true"} ! negative regulation of nucleobase-containing compound metabolic process @@ -14063,23 +14193,25 @@ [Term] id: GO:0014047 ! glutamate secretion is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] id: GO:0014048 ! regulation of glutamate secretion -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport +is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell [Term] id: GO:0014049 ! positive regulation of glutamate secretion is_a: GO:0014048 {is_inferred="true"} ! regulation of glutamate secretion +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0014050 ! negative regulation of glutamate secretion is_a: GO:0014048 {is_inferred="true"} ! regulation of glutamate secretion +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0014051 ! gamma-aminobutyric acid secretion @@ -14087,20 +14219,20 @@ [Term] id: GO:0014052 ! regulation of gamma-aminobutyric acid secretion -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion +is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:0014053 ! negative regulation of gamma-aminobutyric acid secretion is_a: GO:0014052 {is_inferred="true"} ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport [Term] id: GO:0014054 ! positive regulation of gamma-aminobutyric acid secretion is_a: GO:0014052 {is_inferred="true"} ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport [Term] id: GO:0014056 ! regulation of acetylcholine secretion, neurotransmission @@ -14124,6 +14256,7 @@ [Term] id: GO:0014059 ! regulation of dopamine secretion +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:0050433 {is_inferred="true"} ! regulation of catecholamine secretion [Term] @@ -14137,16 +14270,19 @@ [Term] id: GO:0014062 ! regulation of serotonin secretion +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell [Term] id: GO:0014063 ! negative regulation of serotonin secretion is_a: GO:0014062 {is_inferred="true"} ! regulation of serotonin secretion +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell [Term] id: GO:0014064 ! positive regulation of serotonin secretion is_a: GO:0014062 {is_inferred="true"} ! regulation of serotonin secretion +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell [Term] @@ -14518,6 +14654,7 @@ is_a: GO:0030166 {is_inferred="true"} ! proteoglycan biosynthetic process is_a: GO:0030201 {is_inferred="true"} ! heparan sulfate proteoglycan metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] id: GO:0015031 ! protein transport @@ -14547,7 +14684,9 @@ [Term] id: GO:0015120 ! phosphoglycerate transmembrane transporter activity +is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity is_a: GO:0042879 {is_inferred="true"} ! aldonate transmembrane transporter activity +is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] id: GO:0015121 ! phosphoenolpyruvate:phosphate antiporter activity @@ -14555,11 +14694,11 @@ [Term] id: GO:0015123 ! acetate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity [Term] id: GO:0015124 ! allantoate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity [Term] @@ -14578,11 +14717,13 @@ [Term] id: GO:0015129 ! lactate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:0015130 ! mevalonate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:0015131 ! oxaloacetate transmembrane transporter activity @@ -14599,16 +14740,16 @@ [Term] id: GO:0015135 ! glucuronate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015134 {is_inferred="true"} ! hexuronate transmembrane transporter activity [Term] id: GO:0015136 ! sialic acid transmembrane transporter activity -is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity +is_a: GO:0046943 {is_inferred="true"} ! carboxylic acid transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] id: GO:0015137 ! citrate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015142 {is_inferred="true"} ! tricarboxylic acid transmembrane transporter activity [Term] id: GO:0015138 ! fumarate transmembrane transporter activity @@ -14616,7 +14757,7 @@ [Term] id: GO:0015139 ! alpha-ketoglutarate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity [Term] id: GO:0015142 ! tricarboxylic acid transmembrane transporter activity @@ -14686,7 +14827,7 @@ [Term] id: GO:0015164 ! glucuronoside transmembrane transporter activity -is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity +is_a: GO:0046943 {is_inferred="true"} ! carboxylic acid transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] @@ -14701,6 +14842,7 @@ [Term] id: GO:0015169 ! glycerol-3-phosphate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity @@ -14726,12 +14868,19 @@ is_a: GO:0022858 {is_inferred="true"} ! alanine transmembrane transporter activity [Term] +id: GO:0015181 ! arginine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity + +[Term] id: GO:0015182 ! L-asparagine transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity [Term] id: GO:0015183 ! L-aspartate transmembrane transporter activity +is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0015556 {is_inferred="true"} ! C4-dicarboxylate transmembrane transporter activity [Term] @@ -14746,23 +14895,28 @@ [Term] id: GO:0015186 ! L-glutamine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0015187 ! glycine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0015188 ! L-isoleucine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0015658 {is_inferred="true"} ! branched-chain amino acid transmembrane transporter activity [Term] id: GO:0015189 ! L-lysine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0015190 ! L-leucine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0015658 {is_inferred="true"} ! branched-chain amino acid transmembrane transporter activity @@ -14773,11 +14927,13 @@ [Term] id: GO:0015192 ! L-phenylalanine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015173 {is_inferred="true"} ! aromatic amino acid transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0015193 ! L-proline transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] @@ -14788,10 +14944,12 @@ [Term] id: GO:0015195 ! L-threonine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity [Term] id: GO:0015196 ! L-tryptophan transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity is_a: GO:0015173 {is_inferred="true"} ! aromatic amino acid transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity @@ -14801,6 +14959,7 @@ [Term] id: GO:0015199 ! amino-acid betaine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015651 {is_inferred="true"} ! quaternary ammonium group transmembrane transporter activity is_a: GO:0072349 {is_inferred="true"} ! modified amino acid transmembrane transporter activity @@ -14807,6 +14966,7 @@ [Term] id: GO:0015200 ! methylammonium transmembrane transporter activity is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity [Term] id: GO:0015204 ! urea transmembrane transporter activity @@ -14856,6 +15016,7 @@ id: GO:0015217 ! ADP transmembrane transporter activity is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] @@ -14880,6 +15041,7 @@ [Term] id: GO:0015222 ! serotonin transmembrane transporter activity is_a: GO:0008504 {is_inferred="true"} ! monoamine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] @@ -14888,14 +15050,21 @@ [Term] id: GO:0015228 ! coenzyme A transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0071077 {is_inferred="true"} ! adenosine 3',5'-bisphosphate transmembrane transporter activity [Term] +id: GO:0015229 ! L-ascorbic acid transporter activity +is_a: GO:1901476 {is_inferred="true"} ! carbohydrate transporter activity + +[Term] id: GO:0015230 ! FAD transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015215 {is_inferred="true"} ! nucleotide transmembrane transporter activity [Term] id: GO:0015233 ! pantothenate transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity [Term] @@ -14960,10 +15129,11 @@ [Term] id: GO:0015306 ! sialate:cation symporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015136 {is_inferred="true"} ! sialic acid transmembrane transporter activity [Term] id: GO:0015308 ! amiloride:proton antiporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity [Term] @@ -14986,11 +15156,12 @@ [Term] id: GO:0015325 ! acetyl-CoA:CoA antiporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] id: GO:0015327 ! cystine:glutamate antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity is_a: GO:0015328 {is_inferred="true"} ! cystine secondary active transmembrane transporter activity [Term] @@ -15012,6 +15183,10 @@ is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] +id: GO:0015375 ! glycine:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0015388 ! potassium uptake transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity @@ -15045,6 +15220,7 @@ [Term] id: GO:0015483 ! long-chain fatty acid transporting porin activity +is_a: GO:0005253 {is_inferred="true"} ! anion channel activity is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity [Term] @@ -15053,22 +15229,31 @@ is_a: GO:0043178 {is_inferred="true"} ! alcohol binding [Term] +id: GO:0015489 ! putrescine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity + +[Term] +id: GO:0015490 ! cadaverine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity + +[Term] id: GO:0015491 ! cation:cation antiporter activity is_a: GO:0099516 {is_inferred="true"} ! ion antiporter activity [Term] id: GO:0015496 ! putrescine:ornithine antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity [Term] id: GO:0015498 ! pantothenate:sodium symporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity -is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity +is_a: GO:0005343 {is_inferred="true"} ! organic acid:sodium symporter activity is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity [Term] id: GO:0015499 ! formate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity [Term] id: GO:0015501 ! glutamate:sodium symporter activity @@ -15089,6 +15274,10 @@ is_a: GO:0005371 {is_inferred="true"} ! tricarboxylate secondary active transmembrane transporter activity [Term] +id: GO:0015520 ! tetracycline:proton antiporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] id: GO:0015523 ! arabinose efflux transmembrane transporter activity is_a: GO:0015562 {is_inferred="true"} ! efflux transmembrane transporter activity is_a: GO:0042900 {is_inferred="true"} ! arabinose transmembrane transporter activity @@ -15095,7 +15284,8 @@ [Term] id: GO:0015530 ! shikimate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:0015531 ! citrate:proton symporter activity @@ -15103,7 +15293,6 @@ [Term] id: GO:0015539 ! hexuronate:cation symporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity [Term] @@ -15112,7 +15301,7 @@ [Term] id: GO:0015550 ! galacturonate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015134 {is_inferred="true"} ! hexuronate transmembrane transporter activity [Term] id: GO:0015551 ! 3-hydroxyphenyl propanoate transmembrane transporter activity @@ -15120,8 +15309,8 @@ [Term] id: GO:0015552 ! propionate transmembrane transporter activity -is_a: GO:0005319 {is_inferred="true"} ! lipid transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:0015635 {is_inferred="true"} ! short-chain fatty acid transporter activity [Term] id: GO:0015553 ! xanthosine transmembrane transporter activity @@ -15132,10 +15321,6 @@ is_a: GO:1901702 {is_inferred="true"} ! salt transmembrane transporter activity [Term] -id: GO:0015556 ! C4-dicarboxylate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity - -[Term] id: GO:0015567 ! alkane transporter activity is_a: GO:0005215 {is_inferred="true"} ! transporter activity @@ -15145,7 +15330,8 @@ [Term] id: GO:0015569 ! p-aminobenzoyl-glutamate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity +is_a: GO:0071916 {is_inferred="true"} ! dipeptide transmembrane transporter activity [Term] id: GO:0015571 ! N-acetylgalactosamine transmembrane transporter activity @@ -15192,6 +15378,22 @@ is_a: GO:0015149 {is_inferred="true"} ! hexose transmembrane transporter activity [Term] +id: GO:0015594 ! putrescine-importing ATPase activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] +id: GO:0015595 ! spermidine-importing ATPase activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] +id: GO:0015598 ! arginine-importing ATPase activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] +id: GO:0015599 ! glutamine-importing ATPase activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] id: GO:0015604 ! organic phosphonate transmembrane transporter activity is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity @@ -15200,7 +15402,14 @@ is_a: GO:1901677 {is_inferred="true"} ! phosphate transmembrane transporter activity [Term] +id: GO:0015606 ! spermidine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity + +[Term] id: GO:0015619 ! thiamine pyrophosphate-transporting ATPase activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity [Term] @@ -15235,6 +15444,14 @@ is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity [Term] +id: GO:0015655 ! alanine:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] +id: GO:0015657 ! branched-chain amino acid:sodium symporter activity +is_a: GO:0015296 {is_inferred="true"} ! anion:cation symporter activity + +[Term] id: GO:0015658 ! branched-chain amino acid transmembrane transporter activity is_a: GO:0015171 {is_inferred="true"} ! amino acid transmembrane transporter activity @@ -15303,8 +15520,8 @@ [Term] id: GO:0015685 ! ferric-enterobactin transport +is_a: GO:0015688 {is_inferred="true"} ! iron chelate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport -is_a: GO:1901678 {is_inferred="true"} ! iron coordination entity transport [Term] id: GO:0015686 ! ferric triacetylfusarinine C transport @@ -15378,7 +15595,7 @@ [Term] id: GO:0015704 ! cyanate transport is_a: GO:0006820 {is_inferred="true"} ! anion transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0019755 {is_inferred="true"} ! one-carbon compound transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] @@ -15406,7 +15623,7 @@ [Term] id: GO:0015710 ! tellurite transport -is_a: GO:0006820 {is_inferred="true"} ! anion transport +is_a: GO:0015698 {is_inferred="true"} ! inorganic anion transport [Term] id: GO:0015711 ! organic anion transport @@ -15420,15 +15637,19 @@ [Term] id: GO:0015713 ! phosphoglycerate transport +is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:0042873 {is_inferred="true"} ! aldonate transport +is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] id: GO:0015714 ! phosphoenolpyruvate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport [Term] id: GO:0015715 ! nucleotide-sulfate transport is_a: GO:0006862 {is_inferred="true"} ! nucleotide transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] @@ -15457,17 +15678,16 @@ [Term] id: GO:0015721 ! bile acid and bile salt transport is_a: GO:0006869 {is_inferred="true"} ! lipid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0015722 ! canalicular bile acid transport -is_a: GO:0015721 {is_inferred="true"} ! bile acid and bile salt transport -is_a: GO:0046717 {is_inferred="true"} ! acid secretion +is_a: GO:0032782 {is_inferred="true"} ! bile acid secretion [Term] id: GO:0015723 ! bilirubin transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015724 ! formate transport @@ -15484,10 +15704,12 @@ [Term] id: GO:0015727 ! lactate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0015728 ! mevalonate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0015729 ! oxaloacetate transport @@ -15509,10 +15731,11 @@ [Term] id: GO:0015733 ! shikimate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0015734 ! taurine transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0042918 {is_inferred="true"} ! alkanesulfonate transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport @@ -15519,6 +15742,7 @@ [Term] id: GO:0015735 ! uronic acid transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015749 {is_inferred="true"} ! monosaccharide transport [Term] id: GO:0015736 ! hexuronate transport @@ -15535,6 +15759,7 @@ [Term] id: GO:0015739 ! sialic acid transport is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] id: GO:0015740 ! C4-dicarboxylate transport @@ -15558,6 +15783,7 @@ [Term] id: GO:0015745 ! tartrate transport +is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport is_a: GO:0042869 {is_inferred="true"} ! aldarate transport [Term] @@ -15567,6 +15793,7 @@ [Term] id: GO:0015747 ! urate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015748 ! organophosphate ester transport @@ -15686,6 +15913,7 @@ [Term] id: GO:0015779 ! glucuronoside transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport is_a: GO:1901656 {is_inferred="true"} ! glycoside transport [Term] @@ -15699,6 +15927,7 @@ [Term] id: GO:0015782 ! CMP-N-acetylneuraminate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] @@ -15711,26 +15940,32 @@ [Term] id: GO:0015785 ! UDP-galactose transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] id: GO:0015786 ! UDP-glucose transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] id: GO:0015787 ! UDP-glucuronic acid transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] id: GO:0015788 ! UDP-N-acetylglucosamine transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] id: GO:0015789 ! UDP-N-acetylgalactosamine transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] id: GO:0015790 ! UDP-xylose transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015781 {is_inferred="true"} ! pyrimidine nucleotide-sugar transport [Term] @@ -15749,6 +15984,7 @@ [Term] id: GO:0015794 ! glycerol-3-phosphate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport @@ -15785,16 +16021,17 @@ [Term] id: GO:0015805 ! S-adenosyl-L-methionine transport +is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] id: GO:0015806 ! S-methylmethionine transport +is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] id: GO:0015807 ! L-amino acid transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0015808 ! L-alanine transport @@ -15803,7 +16040,7 @@ [Term] id: GO:0015809 ! arginine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0015810 ! aspartate transport @@ -15812,12 +16049,13 @@ [Term] id: GO:0015811 ! L-cystine transport is_a: GO:0000101 {is_inferred="true"} ! sulfur amino acid transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:0015812 ! gamma-aminobutyric acid transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport [Term] id: GO:0015813 ! L-glutamate transport @@ -15827,68 +16065,79 @@ [Term] id: GO:0015814 ! p-aminobenzoyl-glutamate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0042938 {is_inferred="true"} ! dipeptide transport +is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:0015816 ! glycine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport [Term] id: GO:0015817 ! histidine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] id: GO:0015818 ! isoleucine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport [Term] id: GO:0015819 ! lysine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0015820 ! leucine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport [Term] id: GO:0015821 ! methionine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0000101 {is_inferred="true"} ! sulfur amino acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0015822 ! ornithine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0015823 ! phenylalanine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015801 {is_inferred="true"} ! aromatic amino acid transport [Term] id: GO:0015824 ! proline transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0015825 ! L-serine transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport +is_a: GO:0032329 {is_inferred="true"} ! serine transport [Term] id: GO:0015826 ! threonine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0015827 ! tryptophan transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015801 {is_inferred="true"} ! aromatic amino acid transport [Term] id: GO:0015828 ! tyrosine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport is_a: GO:0015801 {is_inferred="true"} ! aromatic amino acid transport [Term] id: GO:0015829 ! valine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport +is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport [Term] id: GO:0015830 ! diaminopimelate transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] @@ -15916,8 +16165,8 @@ [Term] id: GO:0015839 ! cadaverine transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport [Term] id: GO:0015840 ! urea transport @@ -15935,7 +16184,10 @@ [Term] id: GO:0015843 ! methylammonium transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport is_a: GO:0015696 {is_inferred="true"} ! ammonium transport +is_a: GO:0015837 {is_inferred="true"} ! amine transport +is_a: GO:0019755 {is_inferred="true"} ! one-carbon compound transport [Term] id: GO:0015844 ! monoamine transport @@ -15948,6 +16200,16 @@ is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] +id: GO:0015847 ! putrescine transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport + +[Term] +id: GO:0015848 ! spermidine transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport + +[Term] id: GO:0015849 ! organic acid transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport @@ -16016,6 +16278,7 @@ [Term] id: GO:0015866 ! ADP transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -16022,6 +16285,7 @@ [Term] id: GO:0015867 ! ATP transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -16046,6 +16310,7 @@ [Term] id: GO:0015872 ! dopamine transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0051937 {is_inferred="true"} ! catecholamine transport [Term] @@ -16064,13 +16329,17 @@ [Term] id: GO:0015878 ! biotin transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] id: GO:0015879 ! carnitine transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport [Term] id: GO:0015880 ! coenzyme A transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -16077,24 +16346,29 @@ [Term] id: GO:0015881 ! creatine transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:0015882 ! L-ascorbic acid transport +is_a: GO:0015749 {is_inferred="true"} ! monosaccharide transport is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] id: GO:0015883 ! FAD transport is_a: GO:0006862 {is_inferred="true"} ! nucleotide transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport [Term] id: GO:0015884 ! folic acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0042886 {is_inferred="true"} ! amide transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:0015885 ! 5-formyltetrahydrofolate transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] @@ -16106,7 +16380,9 @@ [Term] id: GO:0015887 ! pantothenate transmembrane transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0015888 ! thiamine transport @@ -16130,6 +16406,7 @@ [Term] id: GO:0015896 ! nalidixic acid transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015897 ! organomercurial transport @@ -16137,8 +16414,8 @@ [Term] id: GO:0015898 ! amiloride transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport is_a: GO:0042886 {is_inferred="true"} ! amide transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] id: GO:0015899 ! aminotriazole transport @@ -16166,7 +16443,7 @@ [Term] id: GO:0015904 ! tetracycline transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport [Term] id: GO:0015905 ! bicyclomycin transport @@ -16189,25 +16466,22 @@ is_a: GO:0015908 {is_inferred="true"} ! fatty acid transport [Term] -id: GO:0015911 ! plasma membrane long-chain fatty acid transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport - -[Term] id: GO:0015912 ! short-chain fatty acid transport is_a: GO:0015908 {is_inferred="true"} ! fatty acid transport [Term] id: GO:0015913 ! short-chain fatty acid import -is_a: GO:0006869 {is_inferred="true"} ! lipid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015912 {is_inferred="true"} ! short-chain fatty acid transport [Term] id: GO:0015914 ! phospholipid transport is_a: GO:0006869 {is_inferred="true"} ! lipid transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport [Term] id: GO:0015916 ! fatty-acyl-CoA transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:1901337 {is_inferred="true"} ! thioester transport [Term] @@ -16259,16 +16533,21 @@ [Term] id: GO:0015939 ! pantothenate metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process [Term] id: GO:0015940 ! pantothenate biosynthetic process is_a: GO:0015939 {is_inferred="true"} ! pantothenate metabolic process +is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0015941 ! pantothenate catabolic process is_a: GO:0015939 {is_inferred="true"} ! pantothenate metabolic process +is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] @@ -16866,6 +17145,8 @@ id: GO:0016208 ! AMP binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0016222 ! procollagen-proline 4-dioxygenase complex @@ -17028,10 +17309,11 @@ [Term] id: GO:0016594 ! glycine binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0016595 ! glutamate binding -is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding [Term] id: GO:0016596 ! thienylcyclohexylpiperidine binding @@ -17173,6 +17455,7 @@ is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0042339 {is_inferred="true"} ! keratan sulfate metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] id: GO:0018158 ! protein oxidation @@ -17192,7 +17475,11 @@ [Term] id: GO:0018189 ! pyrroloquinoline quinone biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process +is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] id: GO:0018396 ! peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine @@ -17201,17 +17488,17 @@ [Term] id: GO:0018397 ! peptidyl-phenylalanine bromination to L-2'-bromophenylalanine -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] id: GO:0018398 ! peptidyl-phenylalanine bromination to L-3'-bromophenylalanine -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] id: GO:0018399 ! peptidyl-phenylalanine bromination to L-4'-bromophenylalanine -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] @@ -17247,15 +17534,17 @@ [Term] id: GO:0018868 ! 2-aminobenzenesulfonate metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018871 ! 1-aminocyclopropane-1-carboxylate metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0018872 ! arsonoacetate metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0018873 ! atrazine metabolic process @@ -17264,6 +17553,7 @@ [Term] id: GO:0018874 ! benzoate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018876 ! benzonitrile metabolic process @@ -17312,9 +17602,9 @@ [Term] id: GO:0018887 ! 4-carboxy-4'-sulfoazobenzene metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0006807 {is_inferred="true"} ! nitrogen compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] @@ -17371,6 +17661,7 @@ [Term] id: GO:0018898 ! 2,4-dichlorobenzoate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018899 ! 1,2-dichloroethane metabolic process @@ -17382,7 +17673,9 @@ [Term] id: GO:0018901 ! 2,4-dichlorophenoxyacetic acid metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018902 ! 1,3-dichloro-2-propanol metabolic process @@ -17449,7 +17742,9 @@ [Term] id: GO:0018918 ! gallate metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018919 ! gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolic process @@ -17459,6 +17754,7 @@ id: GO:0018920 ! glyphosate metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process [Term] id: GO:0018921 ! 3-hydroxybenzyl alcohol metabolic process @@ -17479,6 +17775,8 @@ [Term] id: GO:0018924 ! mandelate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0018925 ! m-cresol metabolic process @@ -17486,6 +17784,7 @@ [Term] id: GO:0018926 ! methanesulfonic acid metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0019694 {is_inferred="true"} ! alkanesulfonate metabolic process [Term] @@ -17617,6 +17916,7 @@ [Term] id: GO:0018962 ! 3-phenylpropionate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018963 ! phthalate metabolic process @@ -17656,6 +17956,11 @@ is_a: GO:0072490 {is_inferred="true"} ! toluene-containing compound metabolic process [Term] +id: GO:0018972 ! toluene-4-sulfonate metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0072490 {is_inferred="true"} ! toluene-containing compound metabolic process + +[Term] id: GO:0018973 ! trinitrotoluene metabolic process is_a: GO:0019326 {is_inferred="true"} ! nitrotoluene metabolic process @@ -17678,7 +17983,9 @@ [Term] id: GO:0018980 ! 2,4,5-trichlorophenoxyacetic acid metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0018981 ! triethanolamine metabolic process @@ -17711,11 +18018,13 @@ id: GO:0019002 ! GMP binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0019003 ! GDP binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0019038 ! provirus @@ -17839,6 +18148,7 @@ id: GO:0019249 ! lactate biosynthetic process is_a: GO:0006089 {is_inferred="true"} ! lactate metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0019252 ! starch biosynthetic process @@ -17879,6 +18189,7 @@ [Term] id: GO:0019262 ! N-acetylneuraminate catabolic process is_a: GO:0006054 {is_inferred="true"} ! N-acetylneuraminate metabolic process +is_a: GO:0046348 {is_inferred="true"} ! amino sugar catabolic process is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] @@ -17906,9 +18217,11 @@ id: GO:0019270 ! aerobactin biosynthetic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0046442 {is_inferred="true"} ! aerobactin metabolic process +is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process [Term] id: GO:0019271 ! aerobactin transport +is_a: GO:0006842 {is_inferred="true"} ! tricarboxylic acid transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] @@ -17919,6 +18232,7 @@ [Term] id: GO:0019276 ! UDP-N-acetylgalactosamine metabolic process is_a: GO:0006040 {is_inferred="true"} ! amino sugar metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -17935,7 +18249,6 @@ [Term] id: GO:0019283 ! L-methionine biosynthetic process from O-phospho-L-homoserine and cystathionine -is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process @@ -17942,7 +18255,6 @@ [Term] id: GO:0019284 ! L-methionine biosynthetic process from S-adenosylmethionine -is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0046500 {is_inferred="true"} ! S-adenosylmethionine metabolic process [Term] @@ -17958,7 +18270,7 @@ [Term] id: GO:0019289 ! rhizobactin 1021 biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1902645 {is_inferred="true"} ! tertiary alcohol biosynthetic process [Term] @@ -17968,6 +18280,7 @@ [Term] id: GO:0019294 ! keto-3-deoxy-D-manno-octulosonic acid biosynthetic process +is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0046400 {is_inferred="true"} ! keto-3-deoxy-D-manno-octulosonic acid metabolic process @@ -17987,11 +18300,14 @@ [Term] id: GO:0019297 ! coenzyme B metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0019298 ! coenzyme B biosynthetic process is_a: GO:0019297 {is_inferred="true"} ! coenzyme B metabolic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0019299 ! rhamnose metabolic process @@ -18184,6 +18500,7 @@ [Term] id: GO:0019344 ! cysteine biosynthetic process +is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0006534 {is_inferred="true"} ! cysteine metabolic process [Term] @@ -18213,8 +18530,12 @@ [Term] id: GO:0019351 ! dethiobiotin biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process is_a: GO:0046450 {is_inferred="true"} ! dethiobiotin metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0019352 ! protoporphyrinogen IX biosynthetic process from glycine @@ -18315,7 +18636,9 @@ [Term] id: GO:0019380 ! 3-phenylpropionate catabolic process is_a: GO:0018962 {is_inferred="true"} ! 3-phenylpropionate metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0019381 ! atrazine catabolic process @@ -18361,13 +18684,14 @@ [Term] id: GO:0019389 ! glucuronoside metabolic process is_a: GO:0016137 {is_inferred="true"} ! glycoside metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0044723 {is_inferred="true"} ! single-organism carbohydrate metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] id: GO:0019390 ! glucuronoside biosynthetic process is_a: GO:0016138 {is_inferred="true"} ! glycoside biosynthetic process is_a: GO:0019389 {is_inferred="true"} ! glucuronoside metabolic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0019391 ! glucuronoside catabolic process @@ -18374,6 +18698,7 @@ is_a: GO:0016139 {is_inferred="true"} ! glycoside catabolic process is_a: GO:0019389 {is_inferred="true"} ! glucuronoside metabolic process is_a: GO:0044724 {is_inferred="true"} ! single-organism carbohydrate catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] id: GO:0019392 ! glucarate metabolic process @@ -18392,6 +18717,7 @@ [Term] id: GO:0019396 ! gallate catabolic process is_a: GO:0018918 {is_inferred="true"} ! gallate metabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] @@ -18527,7 +18853,7 @@ [Term] id: GO:0019440 ! tryptophan catabolic process to indole-3-acetate is_a: GO:0006569 {is_inferred="true"} ! tryptophan catabolic process -is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0009683 {is_inferred="true"} ! indoleacetic acid metabolic process [Term] id: GO:0019441 ! tryptophan catabolic process to kynurenine @@ -18552,22 +18878,23 @@ [Term] id: GO:0019446 ! tyrosine catabolic process to phosphoenolpyruvate is_a: GO:0006572 {is_inferred="true"} ! tyrosine catabolic process +is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process +is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0019447 ! D-cysteine catabolic process -is_a: GO:0000098 {is_inferred="true"} ! sulfur amino acid catabolic process +is_a: GO:0009093 {is_inferred="true"} ! cysteine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:0046438 {is_inferred="true"} ! D-cysteine metabolic process -is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0019448 ! L-cysteine catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0009093 {is_inferred="true"} ! cysteine catabolic process is_a: GO:0046439 {is_inferred="true"} ! L-cysteine metabolic process [Term] id: GO:0019449 ! L-cysteine catabolic process to hypotaurine -is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0019448 {is_inferred="true"} ! L-cysteine catabolic process [Term] @@ -18594,7 +18921,6 @@ [Term] id: GO:0019463 ! glycine catabolic process to creatine is_a: GO:0006546 {is_inferred="true"} ! glycine catabolic process -is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006600 {is_inferred="true"} ! creatine metabolic process [Term] @@ -18603,14 +18929,16 @@ [Term] id: GO:0019468 ! nopaline catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process is_a: GO:0046418 {is_inferred="true"} ! nopaline metabolic process +is_a: GO:0072352 {is_inferred="true"} ! tricarboxylic acid catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0019469 ! octopine catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process +is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046419 {is_inferred="true"} ! octopine metabolic process [Term] @@ -18643,6 +18971,7 @@ [Term] id: GO:0019476 ! D-lysine catabolic process is_a: GO:0006554 {is_inferred="true"} ! lysine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:0046441 {is_inferred="true"} ! D-lysine metabolic process [Term] @@ -18652,25 +18981,22 @@ [Term] id: GO:0019478 ! D-amino acid catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0019482 ! beta-alanine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process [Term] id: GO:0019483 ! beta-alanine biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0019482 {is_inferred="true"} ! beta-alanine metabolic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0019484 ! beta-alanine catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0019482 {is_inferred="true"} ! beta-alanine metabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0019485 ! beta-alanine catabolic process to L-alanine @@ -18684,13 +19010,15 @@ [Term] id: GO:0019489 ! methylgallate metabolic process +is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0019491 ! ectoine biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0042399 {is_inferred="true"} ! ectoine metabolic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process @@ -18711,16 +19039,18 @@ [Term] id: GO:0019499 ! cyanide metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process +is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:0019500 ! cyanide catabolic process is_a: GO:0019499 {is_inferred="true"} ! cyanide metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process +is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] id: GO:0019501 ! arsonoacetate catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0018872 {is_inferred="true"} ! arsonoacetate metabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0019502 ! stachydrine metabolic process @@ -18727,6 +19057,7 @@ is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006577 {is_inferred="true"} ! amino-acid betaine metabolic process is_a: GO:0009820 {is_inferred="true"} ! alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] @@ -18835,16 +19166,19 @@ id: GO:0019529 ! taurine catabolic process is_a: GO:0019530 {is_inferred="true"} ! taurine metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0046306 {is_inferred="true"} ! alkanesulfonate catabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0019530 ! taurine metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0019694 {is_inferred="true"} ! alkanesulfonate metabolic process +is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0019531 ! oxalate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity [Term] id: GO:0019532 ! oxalate transport @@ -18877,6 +19211,10 @@ is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] +id: GO:0019539 ! siderophore biosynthetic process from hydroxamic acid +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process + +[Term] id: GO:0019540 ! siderophore biosynthetic process from catechol is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process @@ -18957,6 +19295,8 @@ [Term] id: GO:0019562 ! phenylalanine catabolic process to phosphoenolpyruvate +is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process +is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] @@ -19019,6 +19359,7 @@ [Term] id: GO:0019578 ! aldaric acid biosynthetic process +is_a: GO:0016051 {is_inferred="true"} ! carbohydrate biosynthetic process is_a: GO:0019577 {is_inferred="true"} ! aldaric acid metabolic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process @@ -19074,12 +19415,17 @@ [Term] id: GO:0019596 ! mandelate catabolic process is_a: GO:0018924 {is_inferred="true"} ! mandelate metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0019597 ! (R)-mandelate catabolic process to benzoate is_a: GO:0018874 {is_inferred="true"} ! benzoate metabolic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0019598 ! (R)-mandelate catabolic process to catechol @@ -19118,10 +19464,12 @@ [Term] id: GO:0019609 ! 3-hydroxyphenylacetate metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0019610 ! 3-hydroxyphenylacetate catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0019609 {is_inferred="true"} ! 3-hydroxyphenylacetate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process @@ -19128,11 +19476,14 @@ [Term] id: GO:0019611 ! 4-toluenecarboxylate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0019612 ! 4-toluenecarboxylate catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0019611 {is_inferred="true"} ! 4-toluenecarboxylate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0019614 ! catechol-containing compound catabolic process @@ -19145,7 +19496,12 @@ is_a: GO:0006107 {is_inferred="true"} ! oxaloacetate metabolic process [Term] +id: GO:0019618 ! protocatechuate catabolic process, ortho-cleavage +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process + +[Term] id: GO:0019619 ! 3,4-dihydroxybenzoate catabolic process +is_a: GO:0019614 {is_inferred="true"} ! catechol-containing compound catabolic process is_a: GO:0046278 {is_inferred="true"} ! 3,4-dihydroxybenzoate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process @@ -19172,6 +19528,7 @@ id: GO:0019624 ! atrazine catabolic process to isopropylamine is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:0019381 {is_inferred="true"} ! atrazine catabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] @@ -19193,25 +19550,31 @@ [Term] id: GO:0019628 ! urate catabolic process is_a: GO:0046415 {is_inferred="true"} ! urate metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0072523 {is_inferred="true"} ! purine-containing compound catabolic process [Term] id: GO:0019630 ! quinate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0019631 ! quinate catabolic process is_a: GO:0019630 {is_inferred="true"} ! quinate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0019632 ! shikimate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0019633 ! shikimate catabolic process is_a: GO:0019632 {is_inferred="true"} ! shikimate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0019634 ! organic phosphonate metabolic process @@ -19224,8 +19587,8 @@ [Term] id: GO:0019636 ! phosphonoacetate metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0019637 ! organophosphate metabolic process @@ -19457,19 +19820,21 @@ [Term] id: GO:0019757 ! glycosinolate metabolic process -is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0016143 {is_inferred="true"} ! S-glycoside metabolic process is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0019758 ! glycosinolate biosynthetic process +is_a: GO:0016144 {is_inferred="true"} ! S-glycoside biosynthetic process is_a: GO:0019757 {is_inferred="true"} ! glycosinolate metabolic process -is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0019759 ! glycosinolate catabolic process +is_a: GO:0016145 {is_inferred="true"} ! S-glycoside catabolic process is_a: GO:0019757 {is_inferred="true"} ! glycosinolate metabolic process -is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process -is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process +is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0019760 ! glucosinolate metabolic process @@ -19489,6 +19854,7 @@ id: GO:0019805 ! quinolinate biosynthetic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046874 {is_inferred="true"} ! quinolinate metabolic process +is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process [Term] id: GO:0019808 ! polyamine binding @@ -19495,7 +19861,16 @@ is_a: GO:0005488 {is_inferred="true"} ! binding [Term] +id: GO:0019809 ! spermidine binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding + +[Term] +id: GO:0019810 ! putrescine binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding + +[Term] id: GO:0019811 ! cocaine binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -19540,16 +19915,19 @@ [Term] id: GO:0019852 ! L-ascorbic acid metabolic process +is_a: GO:0005996 {is_inferred="true"} ! monosaccharide metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0019853 ! L-ascorbic acid biosynthetic process is_a: GO:0019852 {is_inferred="true"} ! L-ascorbic acid metabolic process +is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0019854 ! L-ascorbic acid catabolic process is_a: GO:0019852 {is_inferred="true"} ! L-ascorbic acid metabolic process +is_a: GO:0046365 {is_inferred="true"} ! monosaccharide catabolic process is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] @@ -19586,6 +19964,7 @@ [Term] id: GO:0019877 ! diaminopimelate biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046451 {is_inferred="true"} ! diaminopimelate metabolic process @@ -20040,10 +20419,18 @@ is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity [Term] +id: GO:0022858 ! alanine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity + +[Term] id: GO:0022885 ! bacteriocin transmembrane transporter activity is_a: GO:1904680 {is_inferred="true"} ! peptide transmembrane transporter activity [Term] +id: GO:0022889 ! serine transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity + +[Term] id: GO:0022890 ! inorganic cation transmembrane transporter activity is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity @@ -20296,6 +20683,8 @@ [Term] id: GO:0030170 ! pyridoxal phosphate binding is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding +is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] id: GO:0030173 ! integral component of Golgi membrane @@ -20365,15 +20754,18 @@ is_a: GO:0030167 {is_inferred="true"} ! proteoglycan catabolic process is_a: GO:0030201 {is_inferred="true"} ! heparan sulfate proteoglycan metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] id: GO:0030201 ! heparan sulfate proteoglycan metabolic process is_a: GO:0006029 {is_inferred="true"} ! proteoglycan metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process [Term] id: GO:0030202 ! heparin metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process is_a: GO:1903510 {is_inferred="true"} ! mucopolysaccharide metabolic process [Term] @@ -20383,11 +20775,13 @@ [Term] id: GO:0030204 ! chondroitin sulfate metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process is_a: GO:1903510 {is_inferred="true"} ! mucopolysaccharide metabolic process [Term] id: GO:0030205 ! dermatan sulfate metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:1903510 {is_inferred="true"} ! mucopolysaccharide metabolic process [Term] @@ -20395,6 +20789,7 @@ is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0030204 {is_inferred="true"} ! chondroitin sulfate metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] id: GO:0030207 ! chondroitin sulfate catabolic process @@ -20401,6 +20796,7 @@ is_a: GO:0006027 {is_inferred="true"} ! glycosaminoglycan catabolic process is_a: GO:0030204 {is_inferred="true"} ! chondroitin sulfate metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] id: GO:0030208 ! dermatan sulfate biosynthetic process @@ -20407,6 +20803,7 @@ is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0030205 {is_inferred="true"} ! dermatan sulfate metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0030209 ! dermatan sulfate catabolic process @@ -20413,6 +20810,7 @@ is_a: GO:0006027 {is_inferred="true"} ! glycosaminoglycan catabolic process is_a: GO:0030205 {is_inferred="true"} ! dermatan sulfate metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0030210 ! heparin biosynthetic process @@ -20419,6 +20817,7 @@ is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0030202 {is_inferred="true"} ! heparin metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process [Term] id: GO:0030211 ! heparin catabolic process @@ -20425,6 +20824,7 @@ is_a: GO:0006027 {is_inferred="true"} ! glycosaminoglycan catabolic process is_a: GO:0030202 {is_inferred="true"} ! heparin metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] id: GO:0030212 ! hyaluronan metabolic process @@ -20560,12 +20960,14 @@ [Term] id: GO:0030328 ! prenylcysteine catabolic process +is_a: GO:0000098 {is_inferred="true"} ! sulfur amino acid catabolic process is_a: GO:0030329 {is_inferred="true"} ! prenylcysteine metabolic process is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process [Term] id: GO:0030329 ! prenylcysteine metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] id: GO:0030334 ! regulation of cell migration @@ -20612,13 +21014,12 @@ [Term] id: GO:0030393 ! fructoselysine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0030389 {is_inferred="true"} ! fructosamine metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0030394 ! fructoseglycine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0030389 {is_inferred="true"} ! fructosamine metabolic process @@ -20640,21 +21041,29 @@ [Term] id: GO:0030416 ! methylamine metabolic process +is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process +is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] id: GO:0030417 ! nicotianamine metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] id: GO:0030418 ! nicotianamine biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0030417 {is_inferred="true"} ! nicotianamine metabolic process is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0030419 ! nicotianamine catabolic process is_a: GO:0030417 {is_inferred="true"} ! nicotianamine metabolic process +is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:0072352 {is_inferred="true"} ! tricarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0030426 ! growth cone @@ -20801,11 +21210,13 @@ id: GO:0030552 ! cAMP binding is_a: GO:0030551 {is_inferred="true"} ! cyclic nucleotide binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0030553 ! cGMP binding is_a: GO:0030551 {is_inferred="true"} ! cyclic nucleotide binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0030554 ! adenyl nucleotide binding @@ -20816,6 +21227,7 @@ is_a: GO:0006706 {is_inferred="true"} ! steroid catabolic process is_a: GO:0008206 {is_inferred="true"} ! bile acid metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0030574 ! collagen catabolic process @@ -20845,6 +21257,7 @@ [Term] id: GO:0030632 ! D-alanine biosynthetic process is_a: GO:0046436 {is_inferred="true"} ! D-alanine metabolic process +is_a: GO:0046437 {is_inferred="true"} ! D-amino acid biosynthetic process [Term] id: GO:0030634 ! carbon fixation by acetyl-CoA pathway @@ -20867,7 +21280,9 @@ [Term] id: GO:0030643 ! cellular phosphate ion homeostasis +is_a: GO:0030320 {is_inferred="true"} ! cellular monovalent inorganic anion homeostasis is_a: GO:0055062 {is_inferred="true"} ! phosphate ion homeostasis +is_a: GO:0072501 {is_inferred="true"} ! cellular divalent inorganic anion homeostasis [Term] id: GO:0030645 ! glucose catabolic process to butyrate @@ -21522,8 +21937,11 @@ [Term] id: GO:0030974 ! thiamine pyrophosphate transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0045117 {is_inferred="true"} ! azole transport +is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] id: GO:0030975 ! thiamine binding @@ -21533,11 +21951,15 @@ [Term] id: GO:0030976 ! thiamine pyrophosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding +is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] id: GO:0030977 ! taurine binding +is_a: GO:0043210 {is_inferred="true"} ! alkanesulfonate binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -21861,6 +22283,7 @@ [Term] id: GO:0031177 ! phosphopantetheine binding is_a: GO:0033218 {is_inferred="true"} ! amide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding [Term] @@ -22162,19 +22585,19 @@ [Term] id: GO:0031335 ! regulation of sulfur amino acid metabolic process +is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process [Term] id: GO:0031336 ! negative regulation of sulfur amino acid metabolic process is_a: GO:0031335 {is_inferred="true"} ! regulation of sulfur amino acid metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process [Term] id: GO:0031337 ! positive regulation of sulfur amino acid metabolic process is_a: GO:0031335 {is_inferred="true"} ! regulation of sulfur amino acid metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process [Term] @@ -22353,19 +22776,23 @@ [Term] id: GO:0031405 ! lipoic acid binding is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding +is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding +is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] id: GO:0031406 ! carboxylic acid binding is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:0043177 {is_inferred="true"} ! organic acid binding [Term] id: GO:0031407 ! oxylipin metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process +is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process [Term] id: GO:0031408 ! oxylipin biosynthetic process +is_a: GO:0006633 {is_inferred="true"} ! fatty acid biosynthetic process is_a: GO:0031407 {is_inferred="true"} ! oxylipin metabolic process -is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0031410 ! cytoplasmic vesicle @@ -22374,6 +22801,7 @@ [Term] id: GO:0031418 ! L-ascorbic acid binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] id: GO:0031419 ! cobalamin binding @@ -22471,6 +22899,7 @@ id: GO:0031455 ! glycine betaine metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006577 {is_inferred="true"} ! amino-acid betaine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0031456 ! glycine betaine biosynthetic process @@ -22490,6 +22919,7 @@ [Term] id: GO:0031460 ! glycine betaine transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport @@ -22966,9 +23396,14 @@ [Term] id: GO:0031921 ! pyridoxal phosphate transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0031922 ! pyridoxamine transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport is_a: GO:0031919 {is_inferred="true"} ! vitamin B6 transport @@ -22985,11 +23420,14 @@ [Term] id: GO:0031926 ! pyridoxal phosphate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:0031927 ! pyridoxamine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0031924 {is_inferred="true"} ! vitamin B6 transporter activity is_a: GO:0090482 {is_inferred="true"} ! vitamin transmembrane transporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity @@ -23629,7 +24067,7 @@ [Term] id: GO:0032218 ! riboflavin transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] @@ -23867,7 +24305,7 @@ [Term] id: GO:0032309 ! icosanoid secretion -is_a: GO:0046903 {is_inferred="true"} ! secretion +is_a: GO:0046717 {is_inferred="true"} ! acid secretion is_a: GO:0071715 {is_inferred="true"} ! icosanoid transport [Term] @@ -23884,6 +24322,9 @@ id: GO:0032323 ! lipoate catabolic process is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process is_a: GO:0009106 {is_inferred="true"} ! lipoate metabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0032324 ! molybdopterin cofactor biosynthetic process @@ -23915,9 +24356,13 @@ [Term] id: GO:0032328 ! alanine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] +id: GO:0032329 ! serine transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport + +[Term] id: GO:0032330 ! regulation of chondrocyte differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0061035 {is_inferred="true"} ! regulation of cartilage development @@ -24054,8 +24499,12 @@ [Term] id: GO:0032361 ! pyridoxal phosphate catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0042822 {is_inferred="true"} ! pyridoxal phosphate metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0046185 {is_inferred="true"} ! aldehyde catabolic process +is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process +is_a: GO:0072526 {is_inferred="true"} ! pyridine-containing compound catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0032363 ! FMN catabolic process @@ -24576,6 +25025,7 @@ id: GO:0032560 ! guanyl deoxyribonucleotide binding is_a: GO:0019001 {is_inferred="true"} ! guanyl nucleotide binding is_a: GO:0032554 {is_inferred="true"} ! purine deoxyribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0032561 ! guanyl ribonucleotide binding @@ -24585,14 +25035,17 @@ [Term] id: GO:0032562 ! dAMP binding is_a: GO:0032558 {is_inferred="true"} ! adenyl deoxyribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0032563 ! dADP binding is_a: GO:0032558 {is_inferred="true"} ! adenyl deoxyribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0032564 ! dATP binding is_a: GO:0032558 {is_inferred="true"} ! adenyl deoxyribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0032565 ! dGMP binding @@ -25284,8 +25737,7 @@ [Term] id: GO:0032782 ! bile acid secretion -is_a: GO:0006869 {is_inferred="true"} ! lipid transport -is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015721 {is_inferred="true"} ! bile acid and bile salt transport [Term] id: GO:0032784 ! regulation of DNA-templated transcription, elongation @@ -25307,7 +25759,7 @@ [Term] id: GO:0032788 ! saturated monocarboxylic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0032790 ! ribosome disassembly @@ -25651,15 +26103,18 @@ [Term] id: GO:0032893 ! regulation of gluconate transport +is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:0032894 ! negative regulation of gluconate transport +is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0032893 {is_inferred="true"} ! regulation of gluconate transport is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0032895 ! positive regulation of gluconate transport +is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:0032893 {is_inferred="true"} ! regulation of gluconate transport is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport @@ -26157,11 +26612,19 @@ [Term] id: GO:0033049 ! clavulanic acid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0033050 ! clavulanic acid biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0033049 {is_inferred="true"} ! clavulanic acid metabolic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0033051 ! aminophosphonate metabolic process @@ -26170,18 +26633,31 @@ [Term] id: GO:0033052 ! cyanoamino acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0050898 {is_inferred="true"} ! nitrile metabolic process [Term] id: GO:0033053 ! D-glutamine metabolic process is_a: GO:0006541 {is_inferred="true"} ! glutamine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:0033054 ! D-glutamate metabolic process is_a: GO:0006536 {is_inferred="true"} ! glutamate metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] +id: GO:0033055 ! D-arginine metabolic process +is_a: GO:0006525 {is_inferred="true"} ! arginine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process + +[Term] +id: GO:0033056 ! D-ornithine metabolic process +is_a: GO:0006591 {is_inferred="true"} ! ornithine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process + +[Term] id: GO:0033067 ! macrolide metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process @@ -26585,8 +27061,13 @@ [Term] id: GO:0033229 ! cysteine transmembrane transporter activity is_a: GO:0000099 {is_inferred="true"} ! sulfur amino acid transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity [Term] +id: GO:0033230 ! cysteine-transporting ATPase activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity + +[Term] id: GO:0033231 ! carbohydrate export is_a: GO:0008643 {is_inferred="true"} ! carbohydrate transport @@ -26703,6 +27184,7 @@ [Term] id: GO:0033271 ! myo-inositol phosphate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:0015791 {is_inferred="true"} ! polyol transport @@ -26740,13 +27222,13 @@ [Term] id: GO:0033294 ! ectoine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] id: GO:0033295 ! hydroxyectoine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0043178 {is_inferred="true"} ! alcohol binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -26788,7 +27270,7 @@ [Term] id: GO:0033308 ! hydroxyectoine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport @@ -26831,6 +27313,7 @@ [Term] id: GO:0033319 ! UDP-D-xylose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -26840,12 +27323,14 @@ [Term] id: GO:0033321 ! homomethionine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0033322 ! homomethionine biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0033321 {is_inferred="true"} ! homomethionine metabolic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0033323 ! choline biosynthetic process via CDP-choline @@ -26930,6 +27415,7 @@ [Term] id: GO:0033351 ! UDP-D-apiose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -26939,9 +27425,8 @@ [Term] id: GO:0033353 ! S-adenosylmethionine cycle -is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process -is_a: GO:0009066 {is_inferred="true"} ! aspartate family amino acid metabolic process -is_a: GO:0009069 {is_inferred="true"} ! serine family amino acid metabolic process +is_a: GO:0006555 {is_inferred="true"} ! methionine metabolic process +is_a: GO:0046439 {is_inferred="true"} ! L-cysteine metabolic process is_a: GO:0046498 {is_inferred="true"} ! S-adenosylhomocysteine metabolic process [Term] @@ -26950,6 +27435,7 @@ [Term] id: GO:0033356 ! UDP-L-arabinose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -27074,6 +27560,7 @@ [Term] id: GO:0033467 ! CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -27083,15 +27570,18 @@ [Term] id: GO:0033469 ! gibberellin 12 metabolic process +is_a: GO:0009685 {is_inferred="true"} ! gibberellin metabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] id: GO:0033470 ! gibberellin 12 biosynthetic process +is_a: GO:0009686 {is_inferred="true"} ! gibberellin biosynthetic process is_a: GO:0033469 {is_inferred="true"} ! gibberellin 12 metabolic process is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process [Term] id: GO:0033471 ! GDP-L-galactose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -27109,15 +27599,17 @@ [Term] id: GO:0033477 ! S-methylmethionine metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process [Term] id: GO:0033478 ! UDP-rhamnose metabolic process is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] id: GO:0033479 ! UDP-D-galacturonate metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -27128,6 +27620,7 @@ [Term] id: GO:0033481 ! galacturonate biosynthetic process is_a: GO:0019586 {is_inferred="true"} ! galacturonate metabolic process +is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] @@ -27180,21 +27673,32 @@ [Term] id: GO:0033494 ! ferulate metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0033495 ! ferulate biosynthetic process is_a: GO:0033494 {is_inferred="true"} ! ferulate metabolic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process [Term] id: GO:0033496 ! sinapate metabolic process +is_a: GO:0009698 {is_inferred="true"} ! phenylpropanoid metabolic process +is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0033497 ! sinapate biosynthetic process +is_a: GO:0009699 {is_inferred="true"} ! phenylpropanoid biosynthetic process is_a: GO:0033496 {is_inferred="true"} ! sinapate metabolic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process [Term] id: GO:0033498 ! galactose catabolic process via D-galactonate @@ -27228,8 +27732,9 @@ [Term] id: GO:0033507 ! glucosinolate biosynthetic process from phenylalanine -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process is_a: GO:0019761 {is_inferred="true"} ! glucosinolate biosynthetic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0033508 ! glutamate catabolic process to butyrate @@ -27388,6 +27893,7 @@ id: GO:0033587 ! shikimate biosynthetic process is_a: GO:0019632 {is_inferred="true"} ! shikimate metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0033590 ! response to cobalamin @@ -27431,11 +27937,13 @@ id: GO:0033602 ! negative regulation of dopamine secretion is_a: GO:0014059 {is_inferred="true"} ! regulation of dopamine secretion is_a: GO:0033604 {is_inferred="true"} ! negative regulation of catecholamine secretion +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport [Term] id: GO:0033603 ! positive regulation of dopamine secretion is_a: GO:0014059 {is_inferred="true"} ! regulation of dopamine secretion is_a: GO:0033605 {is_inferred="true"} ! positive regulation of catecholamine secretion +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport [Term] id: GO:0033604 ! negative regulation of catecholamine secretion @@ -28171,8 +28679,7 @@ [Term] id: GO:0034201 ! response to oleic acid -is_a: GO:0033993 {is_inferred="true"} ! response to lipid -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid [Term] id: GO:0034203 ! glycolipid translocation @@ -28183,6 +28690,7 @@ id: GO:0034213 ! quinolinate catabolic process is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046874 {is_inferred="true"} ! quinolinate metabolic process +is_a: GO:0072526 {is_inferred="true"} ! pyridine-containing compound catabolic process [Term] id: GO:0034217 ! ascospore wall chitin biosynthetic process @@ -28217,15 +28725,20 @@ [Term] id: GO:0034226 ! lysine import +is_a: GO:0015819 {is_inferred="true"} ! lysine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] id: GO:0034228 ! ethanolamine transmembrane transporter activity is_a: GO:0005275 {is_inferred="true"} ! amine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0015665 {is_inferred="true"} ! alcohol transmembrane transporter activity [Term] id: GO:0034229 ! ethanolamine transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015837 {is_inferred="true"} ! amine transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport @@ -28357,26 +28870,37 @@ [Term] id: GO:0034267 ! discadenine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0072521 {is_inferred="true"} ! purine-containing compound metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0034268 ! discadenine biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0034267 {is_inferred="true"} ! discadenine metabolic process +is_a: GO:0072522 {is_inferred="true"} ! purine-containing compound biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0034269 ! discadenine catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0034267 {is_inferred="true"} ! discadenine metabolic process +is_a: GO:0072523 {is_inferred="true"} ! purine-containing compound catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0034275 ! kynurenic acid metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0034276 ! kynurenic acid biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0034275 {is_inferred="true"} ! kynurenic acid metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0034284 ! response to monosaccharide @@ -28574,7 +29098,7 @@ [Term] id: GO:0034418 ! urate biosynthetic process is_a: GO:0046415 {is_inferred="true"} ! urate metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0072522 {is_inferred="true"} ! purine-containing compound biosynthetic process [Term] id: GO:0034424 ! Vps55/Vps68 complex @@ -28742,6 +29266,7 @@ [Term] id: GO:0034618 ! arginine binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0034624 ! DNA recombinase assembly involved in gene conversion at mating-type locus @@ -28763,6 +29288,7 @@ [Term] id: GO:0034634 ! glutathione transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0035673 {is_inferred="true"} ! oligopeptide transmembrane transporter activity is_a: GO:0042937 {is_inferred="true"} ! tripeptide transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity @@ -28769,6 +29295,7 @@ [Term] id: GO:0034635 ! glutathione transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0042939 {is_inferred="true"} ! tripeptide transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport @@ -28838,6 +29365,8 @@ [Term] id: GO:0034659 ! isopropylmalate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0034662 ! CFTR-NHERF-ezrin complex @@ -28857,6 +29386,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0034694 ! response to prostaglandin +is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid + +[Term] id: GO:0034695 ! response to prostaglandin E is_a: GO:0034694 {is_inferred="true"} ! response to prostaglandin is_a: GO:1901654 {is_inferred="true"} ! response to ketone @@ -28965,11 +29498,13 @@ id: GO:0034775 ! glutathione transmembrane transport is_a: GO:0034635 {is_inferred="true"} ! glutathione transport is_a: GO:0035443 {is_inferred="true"} ! tripeptide transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0034776 ! response to histamine is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:0034982 ! mitochondrial protein processing @@ -29257,6 +29792,7 @@ [Term] id: GO:0035240 ! dopamine binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding is_a: GO:1901338 {is_inferred="true"} ! catecholamine binding [Term] @@ -29290,6 +29826,7 @@ [Term] id: GO:0035276 ! ethanol binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0043178 {is_inferred="true"} ! alcohol binding [Term] @@ -29389,16 +29926,18 @@ [Term] id: GO:0035348 ! acetyl-CoA transmembrane transport is_a: GO:0015876 {is_inferred="true"} ! acetyl-CoA transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0035349 ! coenzyme A transmembrane transport is_a: GO:0015880 {is_inferred="true"} ! coenzyme A transport is_a: GO:0071106 {is_inferred="true"} ! adenosine 3',5'-bisphosphate transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0035350 ! FAD transmembrane transport is_a: GO:0015883 {is_inferred="true"} ! FAD transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport [Term] @@ -29462,6 +30001,7 @@ [Term] id: GO:0035373 ! chondroitin sulfate proteoglycan binding is_a: GO:0005539 {is_inferred="true"} ! glycosaminoglycan binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0043394 {is_inferred="true"} ! proteoglycan binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -29468,6 +30008,7 @@ [Term] id: GO:0035374 ! chondroitin sulfate binding is_a: GO:0005539 {is_inferred="true"} ! glycosaminoglycan binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -29566,7 +30107,8 @@ [Term] id: GO:0035429 ! gluconate transmembrane transport is_a: GO:0015725 {is_inferred="true"} ! gluconate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0035430 ! regulation of gluconate transmembrane transport @@ -29588,7 +30130,7 @@ [Term] id: GO:0035433 ! acetate transmembrane transport is_a: GO:0006846 {is_inferred="true"} ! acetate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0035434 ! copper ion transmembrane transport @@ -29608,6 +30150,7 @@ id: GO:0035438 ! cyclic-di-GMP binding is_a: GO:0030551 {is_inferred="true"} ! cyclic nucleotide binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0035440 ! tuberculosinol biosynthetic process @@ -29709,11 +30252,15 @@ [Term] id: GO:0035498 ! carnosine metabolic process is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0035499 ! carnosine biosynthetic process is_a: GO:0035498 {is_inferred="true"} ! carnosine metabolic process +is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0043043 {is_inferred="true"} ! peptide biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0035504 ! regulation of myosin light chain kinase activity @@ -29744,6 +30291,8 @@ [Term] id: GO:0035524 ! proline transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0015824 {is_inferred="true"} ! proline transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:0035528 ! UDP-N-acetylglucosamine biosynthesis involved in chitin biosynthesis @@ -29916,6 +30465,7 @@ [Term] id: GO:0035639 ! purine ribonucleoside triphosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901265 {is_inferred="true"} ! nucleoside phosphate binding [Term] @@ -29937,6 +30487,7 @@ [Term] id: GO:0035674 ! tricarboxylic acid transmembrane transport +is_a: GO:0006842 {is_inferred="true"} ! tricarboxylic acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] @@ -30137,6 +30688,7 @@ [Term] id: GO:0035832 ! berbamunine metabolic process is_a: GO:0046445 {is_inferred="true"} ! benzyl isoquinoline alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0035833 ! berbamunine biosynthetic process @@ -30219,7 +30771,7 @@ [Term] id: GO:0035873 ! lactate transmembrane transport is_a: GO:0015727 {is_inferred="true"} ! lactate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0035883 ! enteroendocrine cell differentiation @@ -30508,6 +31060,7 @@ [Term] id: GO:0036088 ! D-serine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:0070178 {is_inferred="true"} ! D-serine metabolic process [Term] @@ -30530,20 +31083,19 @@ id: GO:0036100 ! leukotriene catabolic process is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process +is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process [Term] id: GO:0036101 ! leukotriene B4 catabolic process -is_a: GO:0016042 {is_inferred="true"} ! lipid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0036100 {is_inferred="true"} ! leukotriene catabolic process is_a: GO:0036102 {is_inferred="true"} ! leukotriene B4 metabolic process -is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process +is_a: GO:0042758 {is_inferred="true"} ! long-chain fatty acid catabolic process is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:0036102 ! leukotriene B4 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process -is_a: GO:1901568 {is_inferred="true"} ! fatty acid derivative metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process +is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] @@ -30550,6 +31102,7 @@ id: GO:0036103 ! Kdo2-lipid A metabolic process is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process is_a: GO:0006664 {is_inferred="true"} ! glycolipid metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process is_a: GO:1901269 {is_inferred="true"} ! lipooligosaccharide metabolic process [Term] @@ -30557,6 +31110,7 @@ is_a: GO:0008654 {is_inferred="true"} ! phospholipid biosynthetic process is_a: GO:0009247 {is_inferred="true"} ! glycolipid biosynthetic process is_a: GO:0036103 {is_inferred="true"} ! Kdo2-lipid A metabolic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:1901271 {is_inferred="true"} ! lipooligosaccharide biosynthetic process [Term] @@ -30575,6 +31129,7 @@ [Term] id: GO:0036109 ! alpha-linolenic acid metabolic process is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process [Term] id: GO:0036111 ! very long-chain fatty-acyl-CoA metabolic process @@ -30611,7 +31166,7 @@ [Term] id: GO:0036127 ! 3-sulfino-L-alanine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -30667,10 +31222,12 @@ [Term] id: GO:0036229 ! L-glutamine import +is_a: GO:0006868 {is_inferred="true"} ! glutamine transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] id: GO:0036231 ! L-threonine import +is_a: GO:0015826 {is_inferred="true"} ! threonine transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] @@ -30680,11 +31237,13 @@ [Term] id: GO:0036233 ! glycine import +is_a: GO:0015816 {is_inferred="true"} ! glycine transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] id: GO:0036241 ! glutamate catabolic process to 4-hydroxybutyrate -is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0036245 ! cellular response to menadione @@ -30728,10 +31287,12 @@ [Term] id: GO:0036255 ! response to methylamine is_a: GO:0014075 {is_inferred="true"} ! response to amine +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:0036256 ! cellular response to methylamine is_a: GO:0036255 {is_inferred="true"} ! response to methylamine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071418 {is_inferred="true"} ! cellular response to amine stimulus [Term] @@ -30748,7 +31309,7 @@ [Term] id: GO:0036271 ! response to methylphenidate -is_a: GO:0042221 {is_inferred="true"} ! response to chemical +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:0036272 ! response to gemcitabine @@ -31343,7 +31904,7 @@ [Term] id: GO:0042049 ! cellular acyl-CoA homeostasis -is_a: GO:0055082 {is_inferred="true"} ! cellular chemical homeostasis +is_a: GO:0030002 {is_inferred="true"} ! cellular anion homeostasis [Term] id: GO:0042053 ! regulation of dopamine metabolic process @@ -31612,6 +32173,8 @@ id: GO:0042194 ! quinate biosynthetic process is_a: GO:0019630 {is_inferred="true"} ! quinate metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0042196 ! chlorinated hydrocarbon metabolic process @@ -31717,13 +32280,15 @@ [Term] id: GO:0042217 ! 1-aminocyclopropane-1-carboxylate catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0018871 {is_inferred="true"} ! 1-aminocyclopropane-1-carboxylate metabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:0042218 ! 1-aminocyclopropane-1-carboxylate biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0018871 {is_inferred="true"} ! 1-aminocyclopropane-1-carboxylate metabolic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0042219 ! cellular modified amino acid catabolic process @@ -31733,6 +32298,7 @@ id: GO:0042220 ! response to cocaine is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0043279 {is_inferred="true"} ! response to alkaloid +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] @@ -31885,23 +32451,23 @@ [Term] id: GO:0042316 ! penicillin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0030653 {is_inferred="true"} ! beta-lactam antibiotic metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:0042317 ! penicillin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0030655 {is_inferred="true"} ! beta-lactam antibiotic catabolic process is_a: GO:0042316 {is_inferred="true"} ! penicillin metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0042318 ! penicillin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0030654 {is_inferred="true"} ! beta-lactam antibiotic biosynthetic process is_a: GO:0042316 {is_inferred="true"} ! penicillin metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0042320 ! regulation of circadian sleep/wake cycle, REM sleep @@ -31939,6 +32505,7 @@ [Term] id: GO:0042339 ! keratan sulfate metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process is_a: GO:1903510 {is_inferred="true"} ! mucopolysaccharide metabolic process [Term] @@ -31946,6 +32513,7 @@ is_a: GO:0006027 {is_inferred="true"} ! glycosaminoglycan catabolic process is_a: GO:0042339 {is_inferred="true"} ! keratan sulfate metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] id: GO:0042341 ! cyanogenic glycoside metabolic process @@ -31961,12 +32529,12 @@ [Term] id: GO:0042343 ! indole glucosinolate metabolic process -is_a: GO:0016143 {is_inferred="true"} ! S-glycoside metabolic process +is_a: GO:0019760 {is_inferred="true"} ! glucosinolate metabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process [Term] id: GO:0042344 ! indole glucosinolate catabolic process -is_a: GO:0016145 {is_inferred="true"} ! S-glycoside catabolic process +is_a: GO:0019762 {is_inferred="true"} ! glucosinolate catabolic process is_a: GO:0042343 {is_inferred="true"} ! indole glucosinolate metabolic process is_a: GO:0042436 {is_inferred="true"} ! indole-containing compound catabolic process @@ -32013,6 +32581,7 @@ [Term] id: GO:0042357 ! thiamine diphosphate metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:0072527 {is_inferred="true"} ! pyrimidine-containing compound metabolic process @@ -32021,6 +32590,7 @@ id: GO:0042358 ! thiamine diphosphate catabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0042357 {is_inferred="true"} ! thiamine diphosphate metabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process is_a: GO:0072529 {is_inferred="true"} ! pyrimidine-containing compound catabolic process @@ -32049,7 +32619,11 @@ [Term] id: GO:0042367 ! biotin catabolic process is_a: GO:0006768 {is_inferred="true"} ! biotin metabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0042368 ! vitamin D biosynthetic process @@ -32109,7 +32683,7 @@ [Term] id: GO:0042399 ! ectoine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process @@ -32116,9 +32690,9 @@ [Term] id: GO:0042400 ! ectoine catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042399 {is_inferred="true"} ! ectoine metabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process @@ -32131,6 +32705,7 @@ id: GO:0042412 ! taurine biosynthetic process is_a: GO:0019530 {is_inferred="true"} ! taurine metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0046305 {is_inferred="true"} ! alkanesulfonate biosynthetic process is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] @@ -32154,6 +32729,7 @@ [Term] id: GO:0042417 ! dopamine metabolic process is_a: GO:0006584 {is_inferred="true"} ! catecholamine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0042418 ! epinephrine biosynthetic process @@ -32211,6 +32787,7 @@ id: GO:0042428 ! serotonin metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] @@ -32260,8 +32837,8 @@ [Term] id: GO:0042437 ! indoleacetic acid catabolic process is_a: GO:0009683 {is_inferred="true"} ! indoleacetic acid metabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042436 {is_inferred="true"} ! indole-containing compound catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0042438 ! melanin biosynthetic process @@ -32280,6 +32857,7 @@ [Term] id: GO:0042443 ! phenylethylamine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] @@ -32979,6 +33557,7 @@ id: GO:0042818 ! pyridoxamine metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0042816 {is_inferred="true"} ! vitamin B6 metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] @@ -33001,13 +33580,21 @@ [Term] id: GO:0042822 ! pyridoxal phosphate metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process +is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process +is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process +is_a: GO:0072524 {is_inferred="true"} ! pyridine-containing compound metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:0042823 ! pyridoxal phosphate biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0042822 {is_inferred="true"} ! pyridoxal phosphate metabolic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046184 {is_inferred="true"} ! aldehyde biosynthetic process +is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process +is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0042824 ! MHC class I peptide loading complex @@ -33130,9 +33717,9 @@ [Term] id: GO:0042857 ! chrysobactin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006518 {is_inferred="true"} ! peptide metabolic process is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0034308 {is_inferred="true"} ! primary alcohol metabolic process is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process @@ -33139,18 +33726,18 @@ [Term] id: GO:0042858 ! chrysobactin biosynthetic process is_a: GO:0009713 {is_inferred="true"} ! catechol-containing compound biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0034309 {is_inferred="true"} ! primary alcohol biosynthetic process is_a: GO:0042857 {is_inferred="true"} ! chrysobactin metabolic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901162 {is_inferred="true"} ! primary amino compound biosynthetic process [Term] id: GO:0042859 ! chrysobactin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019614 {is_inferred="true"} ! catechol-containing compound catabolic process is_a: GO:0034310 {is_inferred="true"} ! primary alcohol catabolic process is_a: GO:0042857 {is_inferred="true"} ! chrysobactin metabolic process is_a: GO:0043171 {is_inferred="true"} ! peptide catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901161 {is_inferred="true"} ! primary amino compound catabolic process [Term] @@ -33169,27 +33756,27 @@ [Term] id: GO:0042863 ! pyochelin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0042864 ! pyochelin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0042863 {is_inferred="true"} ! pyochelin metabolic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0042865 ! pyochelin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0042863 {is_inferred="true"} ! pyochelin metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] @@ -33205,6 +33792,7 @@ [Term] id: GO:0042869 ! aldarate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0008643 {is_inferred="true"} ! carbohydrate transport [Term] id: GO:0042870 ! D-glucarate transport @@ -33212,6 +33800,7 @@ [Term] id: GO:0042873 ! aldonate transport +is_a: GO:0008643 {is_inferred="true"} ! carbohydrate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport [Term] @@ -33224,7 +33813,8 @@ [Term] id: GO:0042876 ! aldarate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity +is_a: GO:0015144 {is_inferred="true"} ! carbohydrate transmembrane transporter activity [Term] id: GO:0042878 ! D-glucarate transmembrane transporter activity @@ -33232,7 +33822,8 @@ [Term] id: GO:0042879 ! aldonate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:0015144 {is_inferred="true"} ! carbohydrate transmembrane transporter activity [Term] id: GO:0042880 ! D-glucuronate transmembrane transporter activity @@ -33249,6 +33840,7 @@ [Term] id: GO:0042883 ! cysteine transport is_a: GO:0000101 {is_inferred="true"} ! sulfur amino acid transport +is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] id: GO:0042884 ! microcin transport @@ -33286,8 +33878,8 @@ [Term] id: GO:0042894 ! fosmidomycin transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0042886 {is_inferred="true"} ! amide transport -is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] id: GO:0042897 ! polymyxin transporter activity @@ -33308,14 +33900,12 @@ [Term] id: GO:0042904 ! 9-cis-retinoic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process -is_a: GO:0016102 {is_inferred="true"} ! diterpenoid biosynthetic process +is_a: GO:0002138 {is_inferred="true"} ! retinoic acid biosynthetic process is_a: GO:0042905 {is_inferred="true"} ! 9-cis-retinoic acid metabolic process [Term] id: GO:0042905 ! 9-cis-retinoic acid metabolic process -is_a: GO:0001523 {is_inferred="true"} ! retinoid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0042573 {is_inferred="true"} ! retinoic acid metabolic process [Term] id: GO:0042906 ! xanthine transport @@ -33348,7 +33938,7 @@ [Term] id: GO:0042920 ! 3-hydroxyphenylpropionic acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] @@ -33366,11 +33956,12 @@ [Term] id: GO:0042930 ! enterobactin transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:0042932 ! chrysobactin transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport is_a: GO:0042938 {is_inferred="true"} ! dipeptide transport @@ -33400,16 +33991,17 @@ [Term] id: GO:0042940 ! D-amino acid transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0042941 ! D-alanine transport is_a: GO:0032328 {is_inferred="true"} ! alanine transport +is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport [Term] id: GO:0042942 ! D-serine transport is_a: GO:0032329 {is_inferred="true"} ! serine transport +is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport [Term] id: GO:0042943 ! D-amino acid transmembrane transporter activity @@ -33474,7 +34066,7 @@ [Term] id: GO:0042968 ! homoserine transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport [Term] id: GO:0042969 ! lactone transport @@ -33710,6 +34302,7 @@ [Term] id: GO:0043092 ! L-amino acid import +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -33881,6 +34474,8 @@ [Term] id: GO:0043215 ! daunorubicin transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:1901656 {is_inferred="true"} ! glycoside transport [Term] @@ -33975,6 +34570,7 @@ [Term] id: GO:0043278 ! response to morphine is_a: GO:0014072 {is_inferred="true"} ! response to isoquinoline alkaloid +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:0043279 ! response to alkaloid @@ -34016,6 +34612,7 @@ [Term] id: GO:0043295 ! glutathione binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding is_a: GO:1900750 {is_inferred="true"} ! oligopeptide binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -34166,7 +34763,7 @@ [Term] id: GO:0043325 ! phosphatidylinositol-3,4-bisphosphate binding -is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:1902936 {is_inferred="true"} ! phosphatidylinositol bisphosphate binding [Term] id: GO:0043328 ! protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway @@ -34283,6 +34880,7 @@ [Term] id: GO:0043395 ! heparan sulfate proteoglycan binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0043394 {is_inferred="true"} ! proteoglycan binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding @@ -34362,10 +34960,13 @@ [Term] id: GO:0043420 ! anthranilate metabolic process +is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0043421 ! anthranilate catabolic process +is_a: GO:0009074 {is_inferred="true"} ! aromatic amino acid family catabolic process is_a: GO:0043420 {is_inferred="true"} ! anthranilate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process @@ -34384,12 +34985,18 @@ is_a: GO:0043434 {is_inferred="true"} ! response to peptide hormone [Term] +id: GO:0043438 ! acetoacetic acid metabolic process +is_a: GO:1902224 {is_inferred="true"} ! ketone body metabolic process + +[Term] id: GO:0043441 ! acetoacetic acid biosynthetic process is_a: GO:0043438 {is_inferred="true"} ! acetoacetic acid metabolic process +is_a: GO:0046951 {is_inferred="true"} ! ketone body biosynthetic process [Term] id: GO:0043442 ! acetoacetic acid catabolic process is_a: GO:0043438 {is_inferred="true"} ! acetoacetic acid metabolic process +is_a: GO:0046952 {is_inferred="true"} ! ketone body catabolic process [Term] id: GO:0043443 ! acetone metabolic process @@ -34619,8 +35226,13 @@ id: GO:0043531 ! ADP binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] +id: GO:0043533 ! inositol 1,3,4,5 tetrakisphosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding + +[Term] id: GO:0043535 ! regulation of blood vessel endothelial cell migration is_a: GO:0010594 {is_inferred="true"} ! regulation of endothelial cell migration @@ -34871,7 +35483,9 @@ [Term] id: GO:0043639 ! benzoate catabolic process is_a: GO:0018874 {is_inferred="true"} ! benzoate metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0043641 ! novobiocin metabolic process @@ -34987,25 +35601,28 @@ [Term] id: GO:0043858 ! arginine:ornithine antiporter activity is_a: GO:0015181 {is_inferred="true"} ! arginine transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity [Term] id: GO:0043861 ! agmatine:putrescine antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity is_a: GO:0015489 {is_inferred="true"} ! putrescine transmembrane transporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity [Term] id: GO:0043862 ! arginine:agmatine antiporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0015181 {is_inferred="true"} ! arginine transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity [Term] id: GO:0043865 ! methionine transmembrane transporter activity is_a: GO:0000099 {is_inferred="true"} ! sulfur amino acid transmembrane transporter activity +is_a: GO:0008324 {is_inferred="true"} ! cation transmembrane transporter activity [Term] id: GO:0043872 ! lysine:cadaverine antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity [Term] id: GO:0043879 ! glycolate transmembrane transporter activity @@ -35014,7 +35631,7 @@ [Term] id: GO:0043882 ! malate:sodium symporter activity -is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity +is_a: GO:0005343 {is_inferred="true"} ! organic acid:sodium symporter activity [Term] id: GO:0043887 ! melibiose:sodium symporter activity @@ -35625,8 +36242,7 @@ [Term] id: GO:0044539 ! long-chain fatty acid import -is_a: GO:0006869 {is_inferred="true"} ! lipid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015909 {is_inferred="true"} ! long-chain fatty acid transport [Term] id: GO:0044545 ! NSL complex @@ -35678,6 +36294,7 @@ id: GO:0044597 ! daunorubicin metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process @@ -35685,17 +36302,19 @@ id: GO:0044598 ! doxorubicin metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] id: GO:0044610 ! FMN transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015215 {is_inferred="true"} ! nucleotide transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] id: GO:0044667 ! (R)-carnitine:4-(trimethylammonio)butanoate antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity is_a: GO:1901235 {is_inferred="true"} ! (R)-carnitine transmembrane transporter activity is_a: GO:1901236 {is_inferred="true"} ! 4-(trimethylammonio)butanoate transmembrane transporter activity @@ -35729,7 +36348,7 @@ [Term] id: GO:0044690 ! methionine import -is_a: GO:0000101 {is_inferred="true"} ! sulfur amino acid transport +is_a: GO:0015821 {is_inferred="true"} ! methionine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -37041,8 +37660,8 @@ [Term] id: GO:0045487 ! gibberellin catabolic process is_a: GO:0009685 {is_inferred="true"} ! gibberellin metabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0016103 {is_inferred="true"} ! diterpenoid catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process [Term] id: GO:0045488 ! pectin metabolic process @@ -39312,13 +39931,14 @@ [Term] id: GO:0046046 ! TTP metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0009208 {is_inferred="true"} ! pyrimidine ribonucleoside triphosphate metabolic process +is_a: GO:0009218 {is_inferred="true"} ! pyrimidine ribonucleotide metabolic process [Term] id: GO:0046047 ! TTP catabolic process +is_a: GO:0009210 {is_inferred="true"} ! pyrimidine ribonucleoside triphosphate catabolic process +is_a: GO:0009222 {is_inferred="true"} ! pyrimidine ribonucleotide catabolic process is_a: GO:0046046 {is_inferred="true"} ! TTP metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] id: GO:0046048 ! UDP metabolic process @@ -40032,6 +40652,7 @@ id: GO:0046202 ! cyanide biosynthetic process is_a: GO:0019499 {is_inferred="true"} ! cyanide metabolic process is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process +is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] id: GO:0046203 ! spermidine catabolic process @@ -40038,6 +40659,10 @@ is_a: GO:0008216 {is_inferred="true"} ! spermidine metabolic process [Term] +id: GO:0046204 ! nor-spermidine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process + +[Term] id: GO:0046205 ! nor-spermidine catabolic process is_a: GO:0046204 {is_inferred="true"} ! nor-spermidine metabolic process @@ -40133,12 +40758,16 @@ [Term] id: GO:0046228 ! 2,4,5-trichlorophenoxyacetic acid catabolic process is_a: GO:0018980 {is_inferred="true"} ! 2,4,5-trichlorophenoxyacetic acid metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process [Term] id: GO:0046230 ! 2-aminobenzenesulfonate catabolic process is_a: GO:0018868 {is_inferred="true"} ! 2-aminobenzenesulfonate metabolic process is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -40153,12 +40782,16 @@ [Term] id: GO:0046235 ! gallate biosynthetic process is_a: GO:0018918 {is_inferred="true"} ! gallate metabolic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0046236 ! mandelate biosynthetic process is_a: GO:0018924 {is_inferred="true"} ! mandelate metabolic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0046239 ! phthalate catabolic process @@ -40170,6 +40803,7 @@ [Term] id: GO:0046244 ! salicylic acid catabolic process is_a: GO:0009696 {is_inferred="true"} ! salicylic acid metabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] @@ -40226,6 +40860,7 @@ id: GO:0046265 ! thiocyanate catabolic process is_a: GO:0018969 {is_inferred="true"} ! thiocyanate metabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] id: GO:0046267 ! triethanolamine catabolic process @@ -40236,7 +40871,8 @@ [Term] id: GO:0046269 ! toluene-4-sulfonate catabolic process is_a: GO:0018972 {is_inferred="true"} ! toluene-4-sulfonate metabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0072491 {is_inferred="true"} ! toluene-containing compound catabolic process [Term] id: GO:0046271 ! phenylpropanoid catabolic process @@ -40268,19 +40904,24 @@ [Term] id: GO:0046276 ! methylgallate catabolic process is_a: GO:0019489 {is_inferred="true"} ! methylgallate metabolic process +is_a: GO:0019614 {is_inferred="true"} ! catechol-containing compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0046277 ! methylgallate biosynthetic process +is_a: GO:0009713 {is_inferred="true"} ! catechol-containing compound biosynthetic process is_a: GO:0019489 {is_inferred="true"} ! methylgallate metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0046278 ! 3,4-dihydroxybenzoate metabolic process +is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0046279 ! 3,4-dihydroxybenzoate biosynthetic process +is_a: GO:0009713 {is_inferred="true"} ! catechol-containing compound biosynthetic process is_a: GO:0046278 {is_inferred="true"} ! 3,4-dihydroxybenzoate metabolic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process @@ -40345,22 +40986,29 @@ [Term] id: GO:0046295 ! glycolate biosynthetic process is_a: GO:0009441 {is_inferred="true"} ! glycolate metabolic process +is_a: GO:0034309 {is_inferred="true"} ! primary alcohol biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0046296 ! glycolate catabolic process is_a: GO:0009441 {is_inferred="true"} ! glycolate metabolic process +is_a: GO:0034310 {is_inferred="true"} ! primary alcohol catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0046298 ! 2,4-dichlorobenzoate catabolic process is_a: GO:0018898 {is_inferred="true"} ! 2,4-dichlorobenzoate metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process [Term] id: GO:0046300 ! 2,4-dichlorophenoxyacetic acid catabolic process is_a: GO:0018901 {is_inferred="true"} ! 2,4-dichlorophenoxyacetic acid metabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process [Term] id: GO:0046302 ! 2-chloro-N-isopropylacetanilide catabolic process @@ -40406,6 +41054,7 @@ [Term] id: GO:0046311 ! prenylcysteine biosynthetic process +is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0030329 {is_inferred="true"} ! prenylcysteine metabolic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process @@ -40490,6 +41139,7 @@ id: GO:0046333 ! octopamine metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0042439 {is_inferred="true"} ! ethanolamine-containing compound metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0046334 ! octopamine catabolic process @@ -40549,6 +41199,9 @@ [Term] id: GO:0046345 ! abscisic acid catabolic process is_a: GO:0009687 {is_inferred="true"} ! abscisic acid metabolic process +is_a: GO:0016107 {is_inferred="true"} ! sesquiterpenoid catabolic process +is_a: GO:0043290 {is_inferred="true"} ! apocarotenoid catabolic process +is_a: GO:0046164 {is_inferred="true"} ! alcohol catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] @@ -40654,6 +41307,7 @@ [Term] id: GO:0046368 ! GDP-L-fucose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -40705,14 +41359,17 @@ [Term] id: GO:0046380 ! N-acetylneuraminate biosynthetic process is_a: GO:0006054 {is_inferred="true"} ! N-acetylneuraminate metabolic process +is_a: GO:0046349 {is_inferred="true"} ! amino sugar biosynthetic process is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] id: GO:0046381 ! CMP-N-acetylneuraminate metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] id: GO:0046382 ! GDP-D-rhamnose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -40773,24 +41430,30 @@ [Term] id: GO:0046397 ! galacturonate catabolic process is_a: GO:0019586 {is_inferred="true"} ! galacturonate metabolic process +is_a: GO:0046365 {is_inferred="true"} ! monosaccharide catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process [Term] id: GO:0046398 ! UDP-glucuronate metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0046399 ! glucuronate biosynthetic process is_a: GO:0019585 {is_inferred="true"} ! glucuronate metabolic process +is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:0046400 ! keto-3-deoxy-D-manno-octulosonic acid metabolic process +is_a: GO:0005996 {is_inferred="true"} ! monosaccharide metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0046411 ! 2-keto-3-deoxygluconate transport -is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015749 {is_inferred="true"} ! monosaccharide transport +is_a: GO:0042873 {is_inferred="true"} ! aldonate transport [Term] id: GO:0046412 ! phenylmercury acetate metabolic process @@ -40808,8 +41471,12 @@ is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process [Term] +id: GO:0046415 ! urate metabolic process +is_a: GO:0072521 {is_inferred="true"} ! purine-containing compound metabolic process + +[Term] id: GO:0046416 ! D-amino acid metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0046417 ! chorismate metabolic process @@ -40817,13 +41484,15 @@ [Term] id: GO:0046418 ! nopaline metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process +is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:0046419 ! octopine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:0046425 ! regulation of JAK-STAT cascade @@ -40868,18 +41537,22 @@ is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] +id: GO:0046436 ! D-alanine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process + +[Term] id: GO:0046437 ! D-amino acid biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process +is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:0046438 ! D-cysteine metabolic process -is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process -is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process +is_a: GO:0006534 {is_inferred="true"} ! cysteine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:0046439 ! L-cysteine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0006534 {is_inferred="true"} ! cysteine metabolic process [Term] id: GO:0046440 ! L-lysine metabolic process @@ -40888,10 +41561,12 @@ [Term] id: GO:0046441 ! D-lysine metabolic process is_a: GO:0006553 {is_inferred="true"} ! lysine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:0046442 ! aerobactin metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process [Term] id: GO:0046443 ! FAD metabolic process @@ -40930,14 +41605,20 @@ [Term] id: GO:0046450 ! dethiobiotin metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0046451 ! diaminopimelate metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] id: GO:0046452 ! dihydrofolate metabolic process is_a: GO:0006760 {is_inferred="true"} ! folic acid-containing compound metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] id: GO:0046453 ! dipyrrin metabolic process @@ -40959,6 +41640,7 @@ id: GO:0046456 ! icosanoid biosynthetic process is_a: GO:0006690 {is_inferred="true"} ! icosanoid metabolic process is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process +is_a: GO:1901570 {is_inferred="true"} ! fatty acid derivative biosynthetic process [Term] id: GO:0046457 ! prostanoid biosynthetic process @@ -41014,8 +41696,7 @@ [Term] id: GO:0046473 ! phosphatidic acid metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0006650 {is_inferred="true"} ! glycerophospholipid metabolic process [Term] id: GO:0046474 ! glycerophospholipid biosynthetic process @@ -41054,8 +41735,9 @@ [Term] id: GO:0046482 ! para-aminobenzoic acid metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0009072 {is_inferred="true"} ! aromatic amino acid family metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:0046485 ! ether lipid metabolic process @@ -41063,6 +41745,7 @@ [Term] id: GO:0046487 ! glyoxylate metabolic process +is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] @@ -41089,7 +41772,7 @@ [Term] id: GO:0046494 ! rhizobactin 1021 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process is_a: GO:1902644 {is_inferred="true"} ! tertiary alcohol metabolic process @@ -41116,10 +41799,12 @@ id: GO:0046499 ! S-adenosylmethioninamine metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0046500 ! S-adenosylmethionine metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:0046501 ! protoporphyrinogen IX metabolic process @@ -41127,6 +41812,7 @@ [Term] id: GO:0046502 ! uroporphyrinogen III metabolic process +is_a: GO:0006778 {is_inferred="true"} ! porphyrin-containing compound metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] @@ -41142,6 +41828,7 @@ [Term] id: GO:0046505 ! sulfolipid metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process [Term] id: GO:0046506 ! sulfolipid biosynthetic process @@ -41191,6 +41878,7 @@ [Term] id: GO:0046519 ! sphingoid metabolic process is_a: GO:0006665 {is_inferred="true"} ! sphingolipid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0046520 ! sphingoid biosynthetic process @@ -41488,21 +42176,19 @@ [Term] id: GO:0046655 ! folic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006760 {is_inferred="true"} ! folic acid-containing compound metabolic process -is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process [Term] id: GO:0046656 ! folic acid biosynthetic process is_a: GO:0009396 {is_inferred="true"} ! folic acid-containing compound biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process -is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046655 {is_inferred="true"} ! folic acid metabolic process [Term] id: GO:0046657 ! folic acid catabolic process is_a: GO:0009397 {is_inferred="true"} ! folic acid-containing compound catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046655 {is_inferred="true"} ! folic acid metabolic process [Term] @@ -41577,8 +42263,7 @@ [Term] id: GO:0046681 ! response to carbamate -is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] id: GO:0046682 ! response to cyclodiene @@ -41870,6 +42555,7 @@ [Term] id: GO:0046874 ! quinolinate metabolic process is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process +is_a: GO:0072524 {is_inferred="true"} ! pyridine-containing compound metabolic process [Term] id: GO:0046876 ! 3,4-didehydroretinal binding @@ -42020,19 +42706,24 @@ [Term] id: GO:0046942 ! carboxylic acid transport is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0015849 {is_inferred="true"} ! organic acid transport [Term] +id: GO:0046943 ! carboxylic acid transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity + +[Term] id: GO:0046946 ! hydroxylysine metabolic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process +is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process [Term] id: GO:0046947 ! hydroxylysine biosynthetic process -is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process +is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0046946 {is_inferred="true"} ! hydroxylysine metabolic process [Term] id: GO:0046948 ! hydroxylysine catabolic process -is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process +is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process is_a: GO:0046946 {is_inferred="true"} ! hydroxylysine metabolic process [Term] @@ -42056,6 +42747,7 @@ [Term] id: GO:0046963 ! 3'-phosphoadenosine 5'-phosphosulfate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -42065,6 +42757,7 @@ id: GO:0046964 ! 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity @@ -42153,6 +42846,7 @@ [Term] id: GO:0048032 ! galacturonate binding is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding +is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] id: GO:0048033 ! heme o metabolic process @@ -42823,6 +43517,7 @@ [Term] id: GO:0048473 ! D-methionine transport is_a: GO:0015821 {is_inferred="true"} ! methionine transport +is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport [Term] id: GO:0048474 ! D-methionine transmembrane transporter activity @@ -43557,6 +44252,7 @@ is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0034035 {is_inferred="true"} ! purine ribonucleoside bisphosphate metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process is_a: GO:0046128 {is_inferred="true"} ! purine ribonucleoside metabolic process [Term] @@ -43594,6 +44290,7 @@ [Term] id: GO:0050542 ! icosanoid binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:1901567 {is_inferred="true"} ! fatty acid derivative binding [Term] id: GO:0050543 ! icosatetraenoic acid binding @@ -43606,14 +44303,13 @@ [Term] id: GO:0050646 ! 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding +is_a: GO:0050542 {is_inferred="true"} ! icosanoid binding [Term] id: GO:0050647 ! 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding -is_a: GO:1901567 {is_inferred="true"} ! fatty acid derivative binding +is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding +is_a: GO:0050542 {is_inferred="true"} ! icosanoid binding [Term] id: GO:0050648 ! 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding @@ -43625,6 +44321,7 @@ is_a: GO:0006024 {is_inferred="true"} ! glycosaminoglycan biosynthetic process is_a: GO:0030166 {is_inferred="true"} ! proteoglycan biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process is_a: GO:0050654 {is_inferred="true"} ! chondroitin sulfate proteoglycan metabolic process [Term] @@ -43637,6 +44334,7 @@ is_a: GO:0006029 {is_inferred="true"} ! proteoglycan metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0030203 {is_inferred="true"} ! glycosaminoglycan metabolic process +is_a: GO:0043436 {is_inferred="true"} ! oxoacid metabolic process [Term] id: GO:0050655 ! dermatan sulfate proteoglycan metabolic process @@ -43646,6 +44344,7 @@ id: GO:0050656 ! 3'-phosphoadenosine 5'-phosphosulfate binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -43659,6 +44358,7 @@ [Term] id: GO:0050660 ! flavin adenine dinucleotide binding is_a: GO:0000166 {is_inferred="true"} ! nucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0050661 ! NADP binding @@ -44065,6 +44765,7 @@ id: GO:0050783 ! cocaine metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0046448 {is_inferred="true"} ! tropane alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0050784 ! cocaine catabolic process @@ -44158,6 +44859,7 @@ id: GO:0050812 ! regulation of acyl-CoA biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process [Term] @@ -44202,12 +44904,13 @@ [Term] id: GO:0050833 ! pyruvate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity [Term] id: GO:0050843 ! S-adenosylmethionine catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process is_a: GO:0046500 {is_inferred="true"} ! S-adenosylmethionine metabolic process +is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process [Term] id: GO:0050845 ! teichuronic acid biosynthetic process @@ -44785,14 +45488,14 @@ [Term] id: GO:0051071 ! 4,6-pyruvylated galactose residue metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0044723 {is_inferred="true"} ! single-organism carbohydrate metabolic process is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:0051072 ! 4,6-pyruvylated galactose residue biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0051071 {is_inferred="true"} ! 4,6-pyruvylated galactose residue metabolic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process [Term] @@ -44890,9 +45593,11 @@ [Term] id: GO:0051121 ! hepoxilin metabolic process is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process [Term] id: GO:0051122 ! hepoxilin biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:0051121 {is_inferred="true"} ! hepoxilin metabolic process @@ -45588,6 +46293,7 @@ [Term] id: GO:0051378 ! serotonin binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -45601,6 +46307,7 @@ [Term] id: GO:0051381 ! histamine binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -45660,6 +46367,7 @@ [Term] id: GO:0051407 ! glycerone phosphate:inorganic phosphate antiporter activity is_a: GO:0005315 {is_inferred="true"} ! inorganic phosphate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity @@ -45666,6 +46374,7 @@ [Term] id: GO:0051408 ! glyceraldehyde 3-phosphate:inorganic phosphate antiporter activity is_a: GO:0005315 {is_inferred="true"} ! inorganic phosphate transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity @@ -45813,7 +46522,7 @@ [Term] id: GO:0051470 ! ectoine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] @@ -45842,7 +46551,7 @@ [Term] id: GO:0051476 ! mannosylglycerate transport is_a: GO:0008643 {is_inferred="true"} ! carbohydrate transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport is_a: GO:1901656 {is_inferred="true"} ! glycoside transport [Term] @@ -45852,14 +46561,14 @@ [Term] id: GO:0051478 ! mannosylglycerate metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0016137 {is_inferred="true"} ! glycoside metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0044723 {is_inferred="true"} ! single-organism carbohydrate metabolic process [Term] id: GO:0051479 ! mannosylglycerate biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0016138 {is_inferred="true"} ! glycoside biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0051478 {is_inferred="true"} ! mannosylglycerate metabolic process [Term] @@ -46147,11 +46856,13 @@ [Term] id: GO:0051584 ! regulation of dopamine uptake involved in synaptic transmission is_a: GO:0032225 {is_inferred="true"} ! regulation of synaptic transmission, dopaminergic +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:0051940 {is_inferred="true"} ! regulation of catecholamine uptake involved in synaptic transmission [Term] id: GO:0051585 ! negative regulation of dopamine uptake involved in synaptic transmission is_a: GO:0032227 {is_inferred="true"} ! negative regulation of synaptic transmission, dopaminergic +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport is_a: GO:0051584 {is_inferred="true"} ! regulation of dopamine uptake involved in synaptic transmission is_a: GO:0051945 {is_inferred="true"} ! negative regulation of catecholamine uptake involved in synaptic transmission @@ -46158,6 +46869,7 @@ [Term] id: GO:0051586 ! positive regulation of dopamine uptake involved in synaptic transmission is_a: GO:0032226 {is_inferred="true"} ! positive regulation of synaptic transmission, dopaminergic +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport is_a: GO:0051584 {is_inferred="true"} ! regulation of dopamine uptake involved in synaptic transmission is_a: GO:0051944 {is_inferred="true"} ! positive regulation of catecholamine uptake involved in synaptic transmission @@ -46221,6 +46933,7 @@ [Term] id: GO:0051608 ! histamine transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] @@ -46230,16 +46943,19 @@ [Term] id: GO:0051611 ! regulation of serotonin uptake +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:0051580 {is_inferred="true"} ! regulation of neurotransmitter uptake is_a: GO:0060341 {is_inferred="true"} ! regulation of cellular localization [Term] id: GO:0051612 ! negative regulation of serotonin uptake +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport is_a: GO:0051581 {is_inferred="true"} ! negative regulation of neurotransmitter uptake is_a: GO:0051611 {is_inferred="true"} ! regulation of serotonin uptake [Term] id: GO:0051613 ! positive regulation of serotonin uptake +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport is_a: GO:0051582 {is_inferred="true"} ! positive regulation of neurotransmitter uptake is_a: GO:0051611 {is_inferred="true"} ! regulation of serotonin uptake @@ -46249,15 +46965,18 @@ [Term] id: GO:0051616 ! regulation of histamine uptake +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:0051580 {is_inferred="true"} ! regulation of neurotransmitter uptake [Term] id: GO:0051617 ! negative regulation of histamine uptake +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport is_a: GO:0051581 {is_inferred="true"} ! negative regulation of neurotransmitter uptake is_a: GO:0051616 {is_inferred="true"} ! regulation of histamine uptake [Term] id: GO:0051618 ! positive regulation of histamine uptake +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport is_a: GO:0051582 {is_inferred="true"} ! positive regulation of neurotransmitter uptake is_a: GO:0051616 {is_inferred="true"} ! regulation of histamine uptake @@ -46662,9 +47381,14 @@ [Term] id: GO:0051870 ! methotrexate binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0033218 {is_inferred="true"} ! amide binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding +is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] id: GO:0051871 ! dihydrofolic acid binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0033218 {is_inferred="true"} ! amide binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -46831,11 +47555,12 @@ [Term] id: GO:0051935 ! glutamate reuptake is_a: GO:0051933 {is_inferred="true"} ! amino acid neurotransmitter reuptake -is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import into cell +is_a: GO:1990123 {is_inferred="true"} ! L-glutamate import into cell [Term] id: GO:0051936 ! gamma-aminobutyric acid reuptake is_a: GO:0051933 {is_inferred="true"} ! amino acid neurotransmitter reuptake +is_a: GO:0051939 {is_inferred="true"} ! gamma-aminobutyric acid import [Term] id: GO:0051937 ! catecholamine transport @@ -46844,12 +47569,13 @@ [Term] id: GO:0051938 ! L-glutamate import -is_a: GO:0043090 {is_inferred="true"} ! amino acid import -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0015813 {is_inferred="true"} ! L-glutamate transport +is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] id: GO:0051939 ! gamma-aminobutyric acid import is_a: GO:0015812 {is_inferred="true"} ! gamma-aminobutyric acid transport +is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] id: GO:0051940 ! regulation of catecholamine uptake involved in synaptic transmission @@ -46932,20 +47658,24 @@ [Term] id: GO:0051955 ! regulation of amino acid transport is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:0051956 ! negative regulation of amino acid transport is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0051957 ! positive regulation of amino acid transport is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0051958 ! methotrexate transport is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport [Term] id: GO:0051960 ! regulation of nervous system development @@ -47173,6 +47903,7 @@ [Term] id: GO:0052573 ! UDP-D-galactose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -47186,7 +47917,7 @@ [Term] id: GO:0052644 ! chlorophyllide a metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0052643 {is_inferred="true"} ! chlorophyllide metabolic process [Term] @@ -47215,6 +47946,7 @@ id: GO:0052649 ! coenzyme gamma-F420-2 metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:0052648 {is_inferred="true"} ! ribitol phosphate metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process @@ -47246,16 +47978,24 @@ is_a: GO:0052698 {is_inferred="true"} ! ergothioneine metabolic process [Term] -id: GO:0052704 ! ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine -is_a: GO:0052805 {is_inferred="true"} ! imidazole-containing compound catabolic process -is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process +id: GO:0052701 ! cellular modified histidine metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] +id: GO:0052702 ! cellular modified histidine catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process + +[Term] +id: GO:0052703 ! cellular modified histidine biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process + +[Term] id: GO:0052707 ! N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine is_a: GO:0052709 {is_inferred="true"} ! N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process [Term] id: GO:0052708 ! N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] @@ -47458,6 +48198,11 @@ is_a: GO:0098722 {is_inferred="true"} ! asymmetric stem cell division [Term] +id: GO:0055062 ! phosphate ion homeostasis +is_a: GO:0055083 {is_inferred="true"} ! monovalent inorganic anion homeostasis +is_a: GO:0072505 {is_inferred="true"} ! divalent inorganic anion homeostasis + +[Term] id: GO:0055065 ! metal ion homeostasis is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis @@ -47521,6 +48266,7 @@ [Term] id: GO:0055089 ! fatty acid homeostasis +is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis is_a: GO:0055088 {is_inferred="true"} ! lipid homeostasis [Term] @@ -47529,6 +48275,7 @@ [Term] id: GO:0055091 ! phospholipid homeostasis +is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis is_a: GO:0055088 {is_inferred="true"} ! lipid homeostasis [Term] @@ -47577,6 +48324,7 @@ [Term] id: GO:0055130 ! D-alanine catabolic process is_a: GO:0006524 {is_inferred="true"} ! alanine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:0046436 {is_inferred="true"} ! D-alanine metabolic process [Term] @@ -48334,7 +49082,7 @@ [Term] id: GO:0060356 ! leucine import -is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport +is_a: GO:0015820 {is_inferred="true"} ! leucine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -50874,6 +51622,7 @@ id: GO:0061507 ! cyclic-GMP-AMP binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0061509 ! asymmetric protein localization to old mitotic spindle pole body @@ -50907,17 +51656,20 @@ [Term] id: GO:0061531 ! primary amine secretion +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015837 {is_inferred="true"} ! amine transport [Term] id: GO:0061536 ! glycine secretion -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0015816 {is_inferred="true"} ! glycine transport is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] id: GO:0061539 ! octopamine secretion +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0061545 ! tyramine secretion @@ -51050,7 +51802,6 @@ is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process -is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:0061721 ! 6-sulfoquinovose(1-) catabolic process to 3-sulfopropanediol(1-) @@ -51058,7 +51809,6 @@ is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process -is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:0061722 ! sulphoglycolysis @@ -51212,7 +51962,7 @@ [Term] id: GO:0070025 ! carbon monoxide binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0070026 ! nitric oxide binding @@ -51269,6 +52019,10 @@ is_a: GO:0090277 {is_inferred="true"} ! positive regulation of peptide hormone secretion [Term] +id: GO:0070095 ! fructose-6-phosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding + +[Term] id: GO:0070099 ! regulation of chemokine-mediated signaling pathway is_a: GO:0001959 {is_inferred="true"} ! regulation of cytokine-mediated signaling pathway @@ -51519,7 +52273,12 @@ is_a: GO:0070173 {is_inferred="true"} ! regulation of enamel mineralization [Term] +id: GO:0070178 ! D-serine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process + +[Term] id: GO:0070179 ! D-serine biosynthetic process +is_a: GO:0046437 {is_inferred="true"} ! D-amino acid biosynthetic process is_a: GO:0070178 {is_inferred="true"} ! D-serine metabolic process [Term] @@ -51711,6 +52470,7 @@ [Term] id: GO:0070281 ! pyridoxamine binding is_a: GO:0070279 {is_inferred="true"} ! vitamin B6 binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding [Term] id: GO:0070282 ! pyridoxine binding @@ -51747,7 +52507,7 @@ [Term] id: GO:0070300 ! phosphatidic acid binding -is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:0005543 {is_inferred="true"} ! phospholipid binding [Term] id: GO:0070301 ! cellular response to hydrogen peroxide @@ -51930,18 +52690,22 @@ [Term] id: GO:0070401 ! NADP+ binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0050661 {is_inferred="true"} ! NADP binding [Term] id: GO:0070402 ! NADPH binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0050661 {is_inferred="true"} ! NADP binding [Term] id: GO:0070403 ! NAD+ binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0051287 {is_inferred="true"} ! NAD binding [Term] id: GO:0070404 ! NADH binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0051287 {is_inferred="true"} ! NAD binding [Term] @@ -51951,6 +52715,7 @@ [Term] id: GO:0070406 ! glutamine binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0070408 ! carbamoyl phosphate metabolic process @@ -52209,7 +52974,7 @@ [Term] id: GO:0070538 ! oleic acid binding -is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding +is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding [Term] id: GO:0070539 ! linoleic acid binding @@ -52217,8 +52982,7 @@ [Term] id: GO:0070540 ! stearic acid binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding [Term] id: GO:0070541 ! response to platinum ion @@ -52232,8 +52996,7 @@ [Term] id: GO:0070543 ! response to linoleic acid -is_a: GO:0033993 {is_inferred="true"} ! response to lipid -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid [Term] id: GO:0070558 ! alphaM-beta2 integrin-CD63 complex @@ -52365,6 +53128,7 @@ id: GO:0070616 ! regulation of thiamine diphosphate biosynthetic process is_a: GO:0019220 {is_inferred="true"} ! regulation of phosphate metabolic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process @@ -52373,6 +53137,7 @@ is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process is_a: GO:0045936 {is_inferred="true"} ! negative regulation of phosphate metabolic process is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process is_a: GO:0051198 {is_inferred="true"} ! negative regulation of coenzyme metabolic process is_a: GO:0070616 {is_inferred="true"} ! regulation of thiamine diphosphate biosynthetic process @@ -52512,6 +53277,10 @@ is_a: GO:0007032 {is_inferred="true"} ! endosome organization [Term] +id: GO:0070679 ! inositol 1,4,5 trisphosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding + +[Term] id: GO:0070689 ! L-threonine catabolic process to propionate is_a: GO:0019541 {is_inferred="true"} ! propionate metabolic process @@ -52551,6 +53320,7 @@ [Term] id: GO:0070728 ! leucine binding is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0070729 ! cyclic nucleotide transport @@ -52558,6 +53328,7 @@ [Term] id: GO:0070730 ! cAMP transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport is_a: GO:0070729 {is_inferred="true"} ! cyclic nucleotide transport @@ -52565,6 +53336,7 @@ [Term] id: GO:0070731 ! cGMP transport is_a: GO:0001408 {is_inferred="true"} ! guanine nucleotide transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0070729 {is_inferred="true"} ! cyclic nucleotide transport @@ -52644,6 +53416,7 @@ [Term] id: GO:0070777 ! D-aspartate transport is_a: GO:0015810 {is_inferred="true"} ! aspartate transport +is_a: GO:0042940 {is_inferred="true"} ! D-amino acid transport [Term] id: GO:0070778 ! L-aspartate transport @@ -52652,6 +53425,7 @@ [Term] id: GO:0070779 ! D-aspartate import +is_a: GO:0043090 {is_inferred="true"} ! amino acid import is_a: GO:0070777 {is_inferred="true"} ! D-aspartate transport [Term] @@ -52786,6 +53560,7 @@ [Term] id: GO:0070811 ! glycerol-2-phosphate transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015748 {is_inferred="true"} ! organophosphate ester transport is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport @@ -52805,14 +53580,17 @@ [Term] id: GO:0070832 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-choline is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process +is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] id: GO:0070833 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via CDP-N-methylethanolamine is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process +is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] id: GO:0070834 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-N-dimethylethanolamine is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process +is_a: GO:1901160 {is_inferred="true"} ! primary amino compound metabolic process [Term] id: GO:0070836 ! caveola assembly @@ -52902,7 +53680,6 @@ [Term] id: GO:0070881 ! regulation of proline transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] @@ -52921,7 +53698,8 @@ [Term] id: GO:0070890 ! sodium-dependent L-ascorbate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015145 {is_inferred="true"} ! monosaccharide transmembrane transporter activity +is_a: GO:0046943 {is_inferred="true"} ! carboxylic acid transmembrane transporter activity is_a: GO:0090482 {is_inferred="true"} ! vitamin transmembrane transporter activity [Term] @@ -52982,32 +53760,35 @@ [Term] id: GO:0070905 ! serine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding [Term] id: GO:0070906 ! aspartate:alanine antiporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity is_a: GO:0015556 {is_inferred="true"} ! C4-dicarboxylate transmembrane transporter activity is_a: GO:0022858 {is_inferred="true"} ! alanine transmembrane transporter activity [Term] id: GO:0070907 ! histidine:histamine antiporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015171 {is_inferred="true"} ! amino acid transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity is_a: GO:1901474 {is_inferred="true"} ! azole transmembrane transporter activity [Term] id: GO:0070908 ! tyrosine:tyramine antiporter activity is_a: GO:0008504 {is_inferred="true"} ! monoamine transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015173 {is_inferred="true"} ! aromatic amino acid transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015491 {is_inferred="true"} ! cation:cation antiporter activity is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:0070909 ! glutamate:gamma-aminobutyric acid antiporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity is_a: GO:0015185 {is_inferred="true"} ! gamma-aminobutyric acid transmembrane transporter activity -is_a: GO:0015297 {is_inferred="true"} ! antiporter activity +is_a: GO:0015301 {is_inferred="true"} ! anion:anion antiporter activity [Term] id: GO:0070910 ! cell wall macromolecule catabolic process involved in cell wall disassembly @@ -53038,15 +53819,16 @@ [Term] id: GO:0070926 ! regulation of ATP:ADP antiporter activity -is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity is_a: GO:0032242 {is_inferred="true"} ! regulation of nucleoside transport +is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity +is_a: GO:1903959 {is_inferred="true"} ! regulation of anion transmembrane transport [Term] id: GO:0070927 ! negative regulation of ATP:ADP antiporter activity is_a: GO:0032243 {is_inferred="true"} ! negative regulation of nucleoside transport -is_a: GO:0032410 {is_inferred="true"} ! negative regulation of transporter activity -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity is_a: GO:0070926 {is_inferred="true"} ! regulation of ATP:ADP antiporter activity +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport [Term] id: GO:0070939 ! Dsl1/NZR complex @@ -53158,6 +53940,7 @@ [Term] id: GO:0070967 ! coenzyme F420 binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -53165,6 +53948,9 @@ [Term] id: GO:0070968 ! pyrroloquinoline quinone binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0048038 {is_inferred="true"} ! quinone binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding +is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] id: GO:0070972 ! protein localization to endoplasmic reticulum @@ -53701,6 +54487,7 @@ [Term] id: GO:0071246 ! cellular response to chlorate is_a: GO:0010157 {is_inferred="true"} ! response to chlorate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound [Term] @@ -53715,11 +54502,13 @@ [Term] id: GO:0071249 ! cellular response to nitrate is_a: GO:0010167 {is_inferred="true"} ! response to nitrate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1902170 {is_inferred="true"} ! cellular response to reactive nitrogen species [Term] id: GO:0071250 ! cellular response to nitrite +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:0080033 {is_inferred="true"} ! response to nitrite is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1902170 {is_inferred="true"} ! cellular response to reactive nitrogen species @@ -53765,6 +54554,7 @@ [Term] id: GO:0071272 ! morphine metabolic process is_a: GO:0033076 {is_inferred="true"} ! isoquinoline alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901376 {is_inferred="true"} ! organic heteropentacyclic compound metabolic process [Term] @@ -53848,8 +54638,10 @@ [Term] id: GO:0071298 ! cellular response to L-ascorbic acid -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:0033591 {is_inferred="true"} ! response to L-ascorbic acid +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical +is_a: GO:0071295 {is_inferred="true"} ! cellular response to vitamin +is_a: GO:0071326 {is_inferred="true"} ! cellular response to monosaccharide stimulus [Term] id: GO:0071299 ! cellular response to vitamin A @@ -53919,6 +54711,7 @@ [Term] id: GO:0071311 ! cellular response to acetate is_a: GO:0010034 {is_inferred="true"} ! response to acetate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound [Term] @@ -53934,6 +54727,7 @@ [Term] id: GO:0071314 ! cellular response to cocaine is_a: GO:0042220 {is_inferred="true"} ! response to cocaine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071312 {is_inferred="true"} ! cellular response to alkaloid is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -53941,6 +54735,7 @@ [Term] id: GO:0071315 ! cellular response to morphine is_a: GO:0043278 {is_inferred="true"} ! response to morphine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071317 {is_inferred="true"} ! cellular response to isoquinoline alkaloid [Term] @@ -54145,6 +54940,7 @@ id: GO:0071379 ! cellular response to prostaglandin stimulus is_a: GO:0032870 {is_inferred="true"} ! cellular response to hormone stimulus is_a: GO:0034694 {is_inferred="true"} ! response to prostaglandin +is_a: GO:0071398 {is_inferred="true"} ! cellular response to fatty acid [Term] id: GO:0071380 ! cellular response to prostaglandin E stimulus @@ -54250,14 +55046,12 @@ [Term] id: GO:0071399 ! cellular response to linoleic acid is_a: GO:0070543 {is_inferred="true"} ! response to linoleic acid -is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:0071398 {is_inferred="true"} ! cellular response to fatty acid [Term] id: GO:0071400 ! cellular response to oleic acid is_a: GO:0034201 {is_inferred="true"} ! response to oleic acid -is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:0071398 {is_inferred="true"} ! cellular response to fatty acid [Term] id: GO:0071401 ! cellular response to triglyceride @@ -54340,6 +55134,7 @@ [Term] id: GO:0071420 ! cellular response to histamine is_a: GO:0034776 {is_inferred="true"} ! response to histamine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound @@ -54349,12 +55144,12 @@ [Term] id: GO:0071422 ! succinate transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0071423 ! malate transmembrane transport is_a: GO:0015743 {is_inferred="true"} ! malate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0071425 ! hematopoietic stem cell proliferation @@ -54456,11 +55251,14 @@ [Term] id: GO:0071505 ! response to mycophenolic acid -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:0071506 ! cellular response to mycophenolic acid +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:0071505 {is_inferred="true"} ! response to mycophenolic acid is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -54507,17 +55305,17 @@ [Term] id: GO:0071524 ! pyrrolysine biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0071525 {is_inferred="true"} ! pyrrolysine metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:0071525 ! pyrrolysine metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -54905,6 +55703,7 @@ [Term] id: GO:0071715 ! icosanoid transport is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:1901571 {is_inferred="true"} ! fatty acid derivative transport [Term] id: GO:0071716 ! leukotriene transport @@ -54966,12 +55765,13 @@ id: GO:0071792 ! bacillithiol metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0016137 {is_inferred="true"} ! glycoside metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0071793 ! bacillithiol biosynthetic process is_a: GO:0016138 {is_inferred="true"} ! glycoside biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:0071792 {is_inferred="true"} ! bacillithiol metabolic process [Term] @@ -55899,6 +56699,10 @@ is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process [Term] +id: GO:0072334 ! UDP-galactose transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport + +[Term] id: GO:0072335 ! regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation is_a: GO:0060828 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -56341,12 +57145,13 @@ [Term] id: GO:0072544 ! L-DOPA binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding [Term] id: GO:0072545 ! tyrosine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] @@ -56360,6 +57165,7 @@ [Term] id: GO:0072570 ! ADP-D-ribose binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -56604,9 +57410,11 @@ id: GO:0072733 ! response to staurosporine is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0043279 {is_inferred="true"} ! response to alkaloid +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:0072734 ! cellular response to staurosporine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071312 {is_inferred="true"} ! cellular response to alkaloid is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:0072733 {is_inferred="true"} ! response to staurosporine @@ -56631,6 +57439,7 @@ [Term] id: GO:0072743 ! cellular response to erythromycin +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1901323 {is_inferred="true"} ! response to erythromycin is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -57362,12 +58171,12 @@ [Term] id: GO:0080024 ! indolebutyric acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0042430 {is_inferred="true"} ! indole-containing compound metabolic process [Term] id: GO:0080025 ! phosphatidylinositol-3,5-bisphosphate binding -is_a: GO:0043168 {is_inferred="true"} ! anion binding +is_a: GO:1902936 {is_inferred="true"} ! phosphatidylinositol bisphosphate binding [Term] id: GO:0080026 ! response to indolebutyric acid @@ -57383,6 +58192,7 @@ [Term] id: GO:0080033 ! response to nitrite +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound @@ -57390,6 +58200,7 @@ [Term] id: GO:0080035 ! 2-hydroxy-but-3-enyl glucosinolate biosynthetic process is_a: GO:0019761 {is_inferred="true"} ! glucosinolate biosynthetic process +is_a: GO:1902653 {is_inferred="true"} ! secondary alcohol biosynthetic process [Term] id: GO:0080036 ! regulation of cytokinin-activated signaling pathway @@ -57457,7 +58268,8 @@ [Term] id: GO:0080094 ! response to trehalose-6-phosphate -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:0046683 {is_inferred="true"} ! response to organophosphorus +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:0080111 ! DNA demethylation @@ -57480,6 +58292,8 @@ [Term] id: GO:0080121 ! AMP transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015858 {is_inferred="true"} ! nucleoside transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport @@ -57488,6 +58302,8 @@ id: GO:0080122 ! AMP transmembrane transporter activity is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] @@ -57534,10 +58350,11 @@ [Term] id: GO:0080144 ! amino acid homeostasis -is_a: GO:0048878 {is_inferred="true"} ! chemical homeostasis +is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis [Term] id: GO:0080145 ! cysteine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis is_a: GO:0080144 {is_inferred="true"} ! amino acid homeostasis [Term] @@ -57576,6 +58393,8 @@ [Term] id: GO:0080168 ! abscisic acid transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport +is_a: GO:0046865 {is_inferred="true"} ! terpenoid transport [Term] id: GO:0080170 ! hydrogen peroxide transmembrane transport @@ -57861,12 +58680,12 @@ [Term] id: GO:0089703 ! L-aspartate transmembrane export from vacuole -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport [Term] id: GO:0089704 ! L-glutamate transmembrane export from vacuole -is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport [Term] @@ -57881,28 +58700,27 @@ [Term] id: GO:0089707 ! L-lysine transmembrane export from vacuole -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034488 {is_inferred="true"} ! basic amino acid transmembrane export from vacuole is_a: GO:1903401 {is_inferred="true"} ! L-lysine transmembrane transport [Term] id: GO:0089708 ! L-histidine transmembrane export from vacuole -is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole +is_a: GO:0034488 {is_inferred="true"} ! basic amino acid transmembrane export from vacuole is_a: GO:0089709 {is_inferred="true"} ! L-histidine transmembrane transport [Term] id: GO:0089709 ! L-histidine transmembrane transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902024 {is_inferred="true"} ! L-histidine transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] id: GO:0089711 ! L-glutamate transmembrane transport -is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] id: GO:0089712 ! L-aspartate transmembrane transport -is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] id: GO:0089718 ! amino acid import across plasma membrane @@ -57912,12 +58730,13 @@ [Term] id: GO:0089721 ! phosphoenolpyruvate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:0015605 {is_inferred="true"} ! organophosphate ester transmembrane transporter activity [Term] id: GO:0089722 ! phosphoenolpyruvate transmembrane transport is_a: GO:0015714 {is_inferred="true"} ! phosphoenolpyruvate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0090003 ! regulation of establishment of protein localization to plasma membrane @@ -59239,11 +60058,11 @@ [Term] id: GO:0090357 ! regulation of tryptophan metabolic process -is_a: GO:0033238 {is_inferred="true"} ! regulation of cellular amine metabolic process +is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process [Term] id: GO:0090358 ! positive regulation of tryptophan metabolic process -is_a: GO:0033240 {is_inferred="true"} ! positive regulation of cellular amine metabolic process +is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:0090357 {is_inferred="true"} ! regulation of tryptophan metabolic process [Term] @@ -59250,6 +60069,9 @@ id: GO:0090359 ! negative regulation of abscisic acid biosynthetic process is_a: GO:0010115 {is_inferred="true"} ! regulation of abscisic acid biosynthetic process is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0045827 {is_inferred="true"} ! negative regulation of isoprenoid metabolic process +is_a: GO:0051055 {is_inferred="true"} ! negative regulation of lipid biosynthetic process +is_a: GO:1902931 {is_inferred="true"} ! negative regulation of alcohol biosynthetic process [Term] id: GO:0090361 ! regulation of platelet-derived growth factor production @@ -59383,6 +60205,10 @@ is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] +id: GO:0090422 ! thiamine pyrophosphate transporter activity +is_a: GO:0045118 {is_inferred="true"} ! azole transporter activity + +[Term] id: GO:0090425 ! acinar cell differentiation is_a: GO:0002067 {is_inferred="true"} ! glandular epithelial cell differentiation @@ -59409,6 +60235,8 @@ [Term] id: GO:0090448 ! glucosinolate:proton symporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] @@ -59419,46 +60247,66 @@ id: GO:0090453 ! aspartate transmembrane import into vacuole is_a: GO:0015810 {is_inferred="true"} ! aspartate transport is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import [Term] id: GO:0090454 ! glutamate transmembrane import into vacuole is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0090455 ! ornithine transmembrane import into vacuole -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] +id: GO:0090456 ! lysine transmembrane import into vacuole +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport + +[Term] +id: GO:0090457 ! histidine transmembrane import into vacuole +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport + +[Term] id: GO:0090458 ! arginine transmembrane import into vacuole is_a: GO:1903826 {is_inferred="true"} ! arginine transmembrane transport [Term] -id: GO:0090459 ! aspartate homeostasis -is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis +id: GO:0090460 ! threonine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis [Term] -id: GO:0090461 ! glutamate homeostasis -is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis +id: GO:0090462 ! ornithine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis [Term] +id: GO:0090463 ! lysine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis + +[Term] +id: GO:0090464 ! histidine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis + +[Term] +id: GO:0090465 ! arginine homeostasis +is_a: GO:0055080 {is_inferred="true"} ! cation homeostasis + +[Term] id: GO:0090466 ! histidine import +is_a: GO:0015817 {is_inferred="true"} ! histidine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import -is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] id: GO:0090467 ! arginine import +is_a: GO:0015809 {is_inferred="true"} ! arginine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] id: GO:0090468 ! valine import -is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport +is_a: GO:0015829 {is_inferred="true"} ! valine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] id: GO:0090469 ! asparagine import -is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0006867 {is_inferred="true"} ! asparagine transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] @@ -59478,6 +60326,7 @@ [Term] id: GO:0090479 ! L-serine import +is_a: GO:0015825 {is_inferred="true"} ! L-serine transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import is_a: GO:0090478 {is_inferred="true"} ! serine import @@ -59521,6 +60370,7 @@ [Term] id: GO:0090514 ! L-tyrosine transmembrane import into vacuole +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport is_a: GO:1903808 {is_inferred="true"} ! L-tyrosine import into cell @@ -59527,9 +60377,11 @@ [Term] id: GO:0090515 ! L-glutamate transmembrane import into vacuole is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport +is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import into cell [Term] id: GO:0090516 ! L-serine transmembrane import into vacuole +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport is_a: GO:1903812 {is_inferred="true"} ! L-serine import into cell @@ -59685,10 +60537,6 @@ is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] -id: GO:0097054 ! L-glutamate biosynthetic process -is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process - -[Term] id: GO:0097055 ! agmatine biosynthetic process is_a: GO:1901162 {is_inferred="true"} ! primary amino compound biosynthetic process @@ -59736,8 +60584,7 @@ [Term] id: GO:0097089 ! methyl-branched fatty acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process [Term] id: GO:0097092 ! polyacyltrehalose metabolic process @@ -59799,6 +60646,7 @@ [Term] id: GO:0097170 ! ADP-L-glycero-beta-D-manno-heptose metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] @@ -59808,10 +60656,12 @@ [Term] id: GO:0097172 ! N-acetylmuramic acid metabolic process +is_a: GO:0006040 {is_inferred="true"} ! amino sugar metabolic process is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:0097173 ! N-acetylmuramic acid catabolic process +is_a: GO:0046348 {is_inferred="true"} ! amino sugar catabolic process is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:0097172 {is_inferred="true"} ! N-acetylmuramic acid metabolic process @@ -59818,11 +60668,13 @@ [Term] id: GO:0097174 ! 1,6-anhydro-N-acetyl-beta-muramic acid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:0097175 ! 1,6-anhydro-N-acetyl-beta-muramic acid catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:0097174 {is_inferred="true"} ! 1,6-anhydro-N-acetyl-beta-muramic acid metabolic process +is_a: GO:1901136 {is_inferred="true"} ! carbohydrate derivative catabolic process [Term] id: GO:0097176 ! epoxide metabolic process @@ -59833,11 +60685,13 @@ [Term] id: GO:0097184 ! response to azide -is_a: GO:0042221 {is_inferred="true"} ! response to chemical +is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance +is_a: GO:1901698 {is_inferred="true"} ! response to nitrogen compound [Term] id: GO:0097185 ! cellular response to azide is_a: GO:0097184 {is_inferred="true"} ! response to azide +is_a: GO:1901699 {is_inferred="true"} ! cellular response to nitrogen compound [Term] id: GO:0097186 ! amelogenesis @@ -59868,6 +60722,7 @@ id: GO:0097216 ! guanosine tetraphosphate binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032561 {is_inferred="true"} ! guanyl ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:0097222 ! mitochondrial mRNA polyadenylation @@ -59894,6 +60749,7 @@ [Term] id: GO:0097244 ! flavonol binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097243 {is_inferred="true"} ! flavonoid binding [Term] @@ -59910,16 +60766,15 @@ [Term] id: GO:0097251 ! leukotriene B4 biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process is_a: GO:0036102 {is_inferred="true"} ! leukotriene B4 metabolic process -is_a: GO:1901570 {is_inferred="true"} ! fatty acid derivative biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] id: GO:0097253 ! beta-hydroxybutyrate transmembrane transporter activity -is_a: GO:0005319 {is_inferred="true"} ! lipid transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0015245 {is_inferred="true"} ! fatty acid transporter activity +is_a: GO:0015665 {is_inferred="true"} ! alcohol transmembrane transporter activity [Term] id: GO:0097254 ! renal tubular secretion @@ -60084,8 +60939,8 @@ [Term] id: GO:0097339 ! glycolate transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1900866 {is_inferred="true"} ! glycolate transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:0097342 ! ripoptosome @@ -60766,12 +61621,13 @@ [Term] id: GO:0098712 ! L-glutamate import across plasma membrane is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport -is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane is_a: GO:1990123 {is_inferred="true"} ! L-glutamate import into cell [Term] id: GO:0098713 ! leucine import across plasma membrane is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1990122 {is_inferred="true"} ! leucine import into cell [Term] @@ -60802,6 +61658,7 @@ id: GO:0098718 ! serine import across plasma membrane is_a: GO:0061491 {is_inferred="true"} ! serine import into cell is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:0098719 ! sodium ion import across plasma membrane @@ -64277,6 +65134,7 @@ [Term] id: GO:1900333 ! regulation of methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:0019217 {is_inferred="true"} ! regulation of fatty acid metabolic process +is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process is_a: GO:0043457 {is_inferred="true"} ! regulation of cellular respiration is_a: GO:1901577 {is_inferred="true"} ! regulation of alkane biosynthetic process @@ -64283,6 +65141,7 @@ [Term] id: GO:1900334 ! negative regulation of methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:0045922 {is_inferred="true"} ! negative regulation of fatty acid metabolic process +is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process is_a: GO:1900333 {is_inferred="true"} ! regulation of methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:1901578 {is_inferred="true"} ! negative regulation of alkane biosynthetic process is_a: GO:1901856 {is_inferred="true"} ! negative regulation of cellular respiration @@ -64290,6 +65149,7 @@ [Term] id: GO:1900335 ! positive regulation of methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:0045923 {is_inferred="true"} ! positive regulation of fatty acid metabolic process +is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process is_a: GO:1900333 {is_inferred="true"} ! regulation of methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:1901579 {is_inferred="true"} ! positive regulation of alkane biosynthetic process is_a: GO:1901857 {is_inferred="true"} ! positive regulation of cellular respiration @@ -65107,6 +65967,7 @@ [Term] id: GO:1900495 ! negative regulation of butyryl-CoA biosynthetic process from acetyl-CoA +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0045717 {is_inferred="true"} ! negative regulation of fatty acid biosynthetic process is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process is_a: GO:0051198 {is_inferred="true"} ! negative regulation of coenzyme metabolic process @@ -65114,6 +65975,7 @@ [Term] id: GO:1900496 ! positive regulation of butyryl-CoA biosynthetic process from acetyl-CoA +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process is_a: GO:0045723 {is_inferred="true"} ! positive regulation of fatty acid biosynthetic process is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process is_a: GO:0051197 {is_inferred="true"} ! positive regulation of coenzyme metabolic process @@ -65125,11 +65987,13 @@ is_a: GO:0031329 {is_inferred="true"} ! regulation of cellular catabolic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process is_a: GO:1902930 {is_inferred="true"} ! regulation of alcohol biosynthetic process [Term] id: GO:1900498 ! negative regulation of butyryl-CoA catabolic process to butanol +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process is_a: GO:0045922 {is_inferred="true"} ! negative regulation of fatty acid metabolic process is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process @@ -65140,6 +66004,7 @@ [Term] id: GO:1900499 ! positive regulation of butyryl-CoA catabolic process to butanol +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process is_a: GO:0045923 {is_inferred="true"} ! positive regulation of fatty acid metabolic process is_a: GO:0050996 {is_inferred="true"} ! positive regulation of lipid catabolic process @@ -65154,10 +66019,12 @@ is_a: GO:0042304 {is_inferred="true"} ! regulation of fatty acid biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process is_a: GO:0050994 {is_inferred="true"} ! regulation of lipid catabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process [Term] id: GO:1900501 ! negative regulation of butyryl-CoA catabolic process to butyrate +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process is_a: GO:0045717 {is_inferred="true"} ! negative regulation of fatty acid biosynthetic process is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process @@ -65167,6 +66034,7 @@ [Term] id: GO:1900502 ! positive regulation of butyryl-CoA catabolic process to butyrate +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process is_a: GO:0031331 {is_inferred="true"} ! positive regulation of cellular catabolic process is_a: GO:0045723 {is_inferred="true"} ! positive regulation of fatty acid biosynthetic process is_a: GO:0050996 {is_inferred="true"} ! positive regulation of lipid catabolic process @@ -65295,33 +66163,30 @@ [Term] id: GO:1900533 ! palmitic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process [Term] id: GO:1900534 ! palmitic acid catabolic process -is_a: GO:0016042 {is_inferred="true"} ! lipid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0042758 {is_inferred="true"} ! long-chain fatty acid catabolic process is_a: GO:1900533 {is_inferred="true"} ! palmitic acid metabolic process [Term] id: GO:1900535 ! palmitic acid biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1900533 {is_inferred="true"} ! palmitic acid metabolic process [Term] id: GO:1900539 ! fumonisin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process [Term] id: GO:1900540 ! fumonisin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:1900539 {is_inferred="true"} ! fumonisin metabolic process [Term] id: GO:1900541 ! fumonisin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900539 {is_inferred="true"} ! fumonisin metabolic process [Term] @@ -65458,6 +66323,7 @@ is_a: GO:0035836 {is_inferred="true"} ! ergot alkaloid metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] @@ -65480,6 +66346,7 @@ id: GO:1900567 ! chanoclavine-I aldehyde metabolic process is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process is_a: GO:0035836 {is_inferred="true"} ! ergot alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] @@ -65533,15 +66400,15 @@ [Term] id: GO:1900576 ! gerfelin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:1900577 ! gerfelin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019614 {is_inferred="true"} ! catechol-containing compound catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:1900576 {is_inferred="true"} ! gerfelin metabolic process is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process @@ -65548,7 +66415,7 @@ [Term] id: GO:1900578 ! gerfelin biosynthetic process is_a: GO:0009713 {is_inferred="true"} ! catechol-containing compound biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900576 {is_inferred="true"} ! gerfelin metabolic process is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process @@ -65574,20 +66441,20 @@ [Term] id: GO:1900582 ! o-orsellinic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:1900583 ! o-orsellinic acid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1900582 {is_inferred="true"} ! o-orsellinic acid metabolic process [Term] id: GO:1900584 ! o-orsellinic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1900582 {is_inferred="true"} ! o-orsellinic acid metabolic process [Term] @@ -65684,21 +66551,21 @@ [Term] id: GO:1900600 ! endocrocin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] id: GO:1900601 ! endocrocin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1900600 {is_inferred="true"} ! endocrocin metabolic process is_a: GO:1901662 {is_inferred="true"} ! quinone catabolic process [Term] id: GO:1900602 ! endocrocin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1900600 {is_inferred="true"} ! endocrocin metabolic process is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process @@ -65725,7 +66592,7 @@ [Term] id: GO:1900606 ! tensidol B metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process @@ -65732,7 +66599,7 @@ [Term] id: GO:1900607 ! tensidol B catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900606 {is_inferred="true"} ! tensidol B metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -65740,8 +66607,8 @@ [Term] id: GO:1900608 ! tensidol B biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900606 {is_inferred="true"} ! tensidol B metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process @@ -66522,19 +67389,23 @@ [Term] id: GO:1900751 ! 4-(trimethylammonio)butanoate transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0015838 {is_inferred="true"} ! amino-acid betaine transport [Term] id: GO:1900752 ! malonic acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport [Term] id: GO:1900753 ! doxorubicin transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:1901656 {is_inferred="true"} ! glycoside transport [Term] id: GO:1900754 ! 4-hydroxyphenylacetate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:1900756 ! protein processing in phagocytic vesicle @@ -66806,21 +67677,21 @@ [Term] id: GO:1900800 ! cspyrone B1 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:1901334 {is_inferred="true"} ! lactone metabolic process [Term] id: GO:1900801 ! cspyrone B1 catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042182 {is_inferred="true"} ! ketone catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1900800 {is_inferred="true"} ! cspyrone B1 metabolic process is_a: GO:1901335 {is_inferred="true"} ! lactone catabolic process [Term] id: GO:1900802 ! cspyrone B1 biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1900800 {is_inferred="true"} ! cspyrone B1 metabolic process is_a: GO:1901336 {is_inferred="true"} ! lactone biosynthetic process @@ -66851,6 +67722,7 @@ [Term] id: GO:1900807 ! fumigaclavine C metabolic process is_a: GO:0035836 {is_inferred="true"} ! ergot alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1900619 {is_inferred="true"} ! acetate ester metabolic process [Term] @@ -66866,49 +67738,49 @@ [Term] id: GO:1900810 ! helvolic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process [Term] id: GO:1900811 ! helvolic acid catabolic process is_a: GO:0006706 {is_inferred="true"} ! steroid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042182 {is_inferred="true"} ! ketone catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1900810 {is_inferred="true"} ! helvolic acid metabolic process [Term] id: GO:1900812 ! helvolic acid biosynthetic process is_a: GO:0006694 {is_inferred="true"} ! steroid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1900810 {is_inferred="true"} ! helvolic acid metabolic process [Term] id: GO:1900813 ! monodictyphenone metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:1900814 ! monodictyphenone catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0042182 {is_inferred="true"} ! ketone catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1900813 {is_inferred="true"} ! monodictyphenone metabolic process [Term] id: GO:1900815 ! monodictyphenone biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1900813 {is_inferred="true"} ! monodictyphenone metabolic process [Term] id: GO:1900816 ! ochratoxin A metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -66915,8 +67787,8 @@ [Term] id: GO:1900817 ! ochratoxin A catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042219 {is_inferred="true"} ! cellular modified amino acid catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900816 {is_inferred="true"} ! ochratoxin A metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -66923,10 +67795,10 @@ [Term] id: GO:1900818 ! ochratoxin A biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900816 {is_inferred="true"} ! ochratoxin A metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process @@ -66991,33 +67863,36 @@ [Term] id: GO:1900828 ! D-tyrosine metabolic process is_a: GO:0006570 {is_inferred="true"} ! tyrosine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:1900829 ! D-tyrosine catabolic process is_a: GO:0006572 {is_inferred="true"} ! tyrosine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:1900828 {is_inferred="true"} ! D-tyrosine metabolic process [Term] id: GO:1900830 ! D-tyrosine biosynthetic process is_a: GO:0006571 {is_inferred="true"} ! tyrosine biosynthetic process +is_a: GO:0046437 {is_inferred="true"} ! D-amino acid biosynthetic process is_a: GO:1900828 {is_inferred="true"} ! D-tyrosine metabolic process [Term] id: GO:1900831 ! D-leucine metabolic process -is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process -is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process +is_a: GO:0006551 {is_inferred="true"} ! leucine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:1900832 ! D-leucine catabolic process -is_a: GO:0009083 {is_inferred="true"} ! branched-chain amino acid catabolic process +is_a: GO:0006552 {is_inferred="true"} ! leucine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:1900831 {is_inferred="true"} ! D-leucine metabolic process -is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] id: GO:1900833 ! D-leucine biosynthetic process -is_a: GO:0009082 {is_inferred="true"} ! branched-chain amino acid biosynthetic process +is_a: GO:0009098 {is_inferred="true"} ! leucine biosynthetic process +is_a: GO:0046437 {is_inferred="true"} ! D-amino acid biosynthetic process is_a: GO:1900831 {is_inferred="true"} ! D-leucine metabolic process -is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process [Term] id: GO:1900834 ! regulation of emericellin biosynthetic process @@ -67210,23 +68085,29 @@ [Term] id: GO:1900866 ! glycolate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport [Term] id: GO:1900867 ! sarcinapterin metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process is_a: GO:2001115 {is_inferred="true"} ! methanopterin-containing compound metabolic process [Term] id: GO:1900868 ! sarcinapterin biosynthetic process +is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process is_a: GO:1900867 {is_inferred="true"} ! sarcinapterin metabolic process is_a: GO:2001116 {is_inferred="true"} ! methanopterin-containing compound biosynthetic process [Term] id: GO:1900869 ! tatiopterin metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0042558 {is_inferred="true"} ! pteridine-containing compound metabolic process [Term] id: GO:1900870 ! tatiopterin biosynthetic process is_a: GO:0042559 {is_inferred="true"} ! pteridine-containing compound biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1900869 {is_inferred="true"} ! tatiopterin metabolic process [Term] @@ -67482,20 +68363,18 @@ [Term] id: GO:1900920 ! regulation of L-glutamate import +is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:1900921 ! negative regulation of L-glutamate import -is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:0002037 {is_inferred="true"} ! negative regulation of L-glutamate transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:1900922 ! positive regulation of L-glutamate import -is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:0002038 {is_inferred="true"} ! positive regulation of L-glutamate transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:1900923 ! regulation of glycine import @@ -67805,18 +68684,18 @@ [Term] id: GO:1900977 ! regulation of tatiopterin metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process [Term] id: GO:1900978 ! negative regulation of tatiopterin metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1900977 {is_inferred="true"} ! regulation of tatiopterin metabolic process [Term] id: GO:1900979 ! positive regulation of tatiopterin metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1900977 {is_inferred="true"} ! regulation of tatiopterin metabolic process @@ -67841,6 +68720,7 @@ id: GO:1900983 ! vindoline metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0046447 {is_inferred="true"} ! terpenoid indole alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1900619 {is_inferred="true"} ! acetate ester metabolic process is_a: GO:1901376 {is_inferred="true"} ! organic heteropentacyclic compound metabolic process is_a: GO:1902644 {is_inferred="true"} ! tertiary alcohol metabolic process @@ -67863,6 +68743,7 @@ [Term] id: GO:1900986 ! ajmaline metabolic process is_a: GO:0046447 {is_inferred="true"} ! terpenoid indole alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1900987 ! ajmaline catabolic process @@ -67877,6 +68758,7 @@ [Term] id: GO:1900989 ! scopolamine metabolic process is_a: GO:0046448 {is_inferred="true"} ! tropane alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:0097176 {is_inferred="true"} ! epoxide metabolic process [Term] @@ -67997,6 +68879,7 @@ [Term] id: GO:1901010 ! (S)-reticuline metabolic process is_a: GO:0046445 {is_inferred="true"} ! benzyl isoquinoline alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901011 ! (S)-reticuline catabolic process @@ -68011,6 +68894,7 @@ [Term] id: GO:1901013 ! 3alpha(S)-strictosidine metabolic process is_a: GO:0035834 {is_inferred="true"} ! indole alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901804 {is_inferred="true"} ! beta-glucoside metabolic process [Term] @@ -68063,15 +68947,18 @@ [Term] id: GO:1901022 ! 4-hydroxyphenylacetate metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:1901023 ! 4-hydroxyphenylacetate catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901022 {is_inferred="true"} ! 4-hydroxyphenylacetate metabolic process [Term] id: GO:1901024 ! 4-hydroxyphenylacetate biosynthetic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901022 {is_inferred="true"} ! 4-hydroxyphenylacetate metabolic process @@ -68125,16 +69012,17 @@ [Term] id: GO:1901034 ! regulation of L-glutamine import is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import +is_a: GO:2000485 {is_inferred="true"} ! regulation of glutamine transport [Term] id: GO:1901035 ! negative regulation of L-glutamine import -is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1901034 {is_inferred="true"} ! regulation of L-glutamine import +is_a: GO:2000486 {is_inferred="true"} ! negative regulation of glutamine transport [Term] id: GO:1901036 ! positive regulation of L-glutamine import -is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1901034 {is_inferred="true"} ! regulation of L-glutamine import +is_a: GO:2000487 {is_inferred="true"} ! positive regulation of glutamine transport [Term] id: GO:1901038 ! cyanidin 3-O-glucoside metabolic process @@ -68222,6 +69110,7 @@ [Term] id: GO:1901055 ! trimethylenediamine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] @@ -68278,8 +69167,10 @@ [Term] id: GO:1901067 ! ferulate catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0033494 {is_inferred="true"} ! ferulate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process [Term] id: GO:1901068 ! guanosine-containing compound metabolic process @@ -68488,17 +69379,17 @@ [Term] id: GO:1901110 ! actinorhodin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] id: GO:1901111 ! actinorhodin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0030640 {is_inferred="true"} ! polyketide catabolic process +is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1901110 {is_inferred="true"} ! actinorhodin metabolic process is_a: GO:1901662 {is_inferred="true"} ! quinone catabolic process @@ -68505,9 +69396,9 @@ [Term] id: GO:1901112 ! actinorhodin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1901110 {is_inferred="true"} ! actinorhodin metabolic process is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process @@ -68515,6 +69406,7 @@ [Term] id: GO:1901113 ! erythromycin metabolic process is_a: GO:0033067 {is_inferred="true"} ! macrolide metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901114 ! erythromycin catabolic process @@ -68548,6 +69440,7 @@ id: GO:1901119 ! tobramycin metabolic process is_a: GO:0016137 {is_inferred="true"} ! glycoside metabolic process is_a: GO:0019751 {is_inferred="true"} ! polyol metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901120 ! tobramycin catabolic process @@ -68671,7 +69564,7 @@ [Term] id: GO:1901149 ! salicylic acid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] @@ -69124,6 +70017,7 @@ [Term] id: GO:1901236 ! 4-(trimethylammonio)butanoate transmembrane transporter activity +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity is_a: GO:0015651 {is_inferred="true"} ! quaternary ammonium group transmembrane transporter activity [Term] @@ -69137,20 +70031,23 @@ [Term] id: GO:1901239 ! malonate(1-) transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity [Term] id: GO:1901241 ! 4-hydroxyphenylacetate transmembrane transporter activity -is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity +is_a: GO:0008028 {is_inferred="true"} ! monocarboxylic acid transmembrane transporter activity +is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity [Term] id: GO:1901242 ! ATPase-coupled doxorubicin transmembrane transporter activity -is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances +is_a: GO:0008519 {is_inferred="true"} ! ammonium transmembrane transporter activity +is_a: GO:0015101 {is_inferred="true"} ! organic cation transmembrane transporter activity +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] id: GO:1901243 ! ATPase-coupled methionine transmembrane transporter activity -is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances +is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity is_a: GO:0043865 {is_inferred="true"} ! methionine transmembrane transporter activity [Term] @@ -69273,6 +70170,7 @@ [Term] id: GO:1901266 ! cephalosporin C metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0043645 {is_inferred="true"} ! cephalosporin metabolic process [Term] @@ -69279,11 +70177,13 @@ id: GO:1901267 ! cephalosporin C catabolic process is_a: GO:0030655 {is_inferred="true"} ! beta-lactam antibiotic catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:1901266 {is_inferred="true"} ! cephalosporin C metabolic process [Term] id: GO:1901268 ! cephalosporin C biosynthetic process is_a: GO:0043646 {is_inferred="true"} ! cephalosporin biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1901266 {is_inferred="true"} ! cephalosporin C metabolic process [Term] @@ -69303,17 +70203,17 @@ [Term] id: GO:1901272 ! 2-dehydro-3-deoxy-D-gluconic acid metabolic process is_a: GO:0005996 {is_inferred="true"} ! monosaccharide metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0019520 {is_inferred="true"} ! aldonic acid metabolic process [Term] id: GO:1901273 ! 2-dehydro-3-deoxy-D-gluconic acid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0046176 {is_inferred="true"} ! aldonic acid catabolic process is_a: GO:0046365 {is_inferred="true"} ! monosaccharide catabolic process is_a: GO:1901272 {is_inferred="true"} ! 2-dehydro-3-deoxy-D-gluconic acid metabolic process [Term] id: GO:1901274 ! 2-dehydro-3-deoxy-D-gluconic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0046175 {is_inferred="true"} ! aldonic acid biosynthetic process is_a: GO:0046364 {is_inferred="true"} ! monosaccharide biosynthetic process is_a: GO:1901272 {is_inferred="true"} ! 2-dehydro-3-deoxy-D-gluconic acid metabolic process @@ -69342,30 +70242,31 @@ [Term] id: GO:1901281 ! fructoselysine catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:0030392 {is_inferred="true"} ! fructosamine catabolic process is_a: GO:0030393 {is_inferred="true"} ! fructoselysine metabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:1901282 ! fructoselysine biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:0030391 {is_inferred="true"} ! fructosamine biosynthetic process is_a: GO:0030393 {is_inferred="true"} ! fructoselysine metabolic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:1901283 ! 5,6,7,8-tetrahydromethanopterin metabolic process +is_a: GO:0043648 {is_inferred="true"} ! dicarboxylic acid metabolic process is_a: GO:2001117 {is_inferred="true"} ! tetrahydromethanopterin metabolic process [Term] id: GO:1901284 ! 5,6,7,8-tetrahydromethanopterin catabolic process is_a: GO:0042560 {is_inferred="true"} ! pteridine-containing compound catabolic process +is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process is_a: GO:1901283 {is_inferred="true"} ! 5,6,7,8-tetrahydromethanopterin metabolic process [Term] id: GO:1901285 ! 5,6,7,8-tetrahydromethanopterin biosynthetic process +is_a: GO:0043650 {is_inferred="true"} ! dicarboxylic acid biosynthetic process is_a: GO:1901283 {is_inferred="true"} ! 5,6,7,8-tetrahydromethanopterin metabolic process is_a: GO:2001118 {is_inferred="true"} ! tetrahydromethanopterin biosynthetic process @@ -69545,6 +70446,7 @@ [Term] id: GO:1901323 ! response to erythromycin is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] @@ -69676,8 +70578,10 @@ [Term] id: GO:1901349 ! glucosinolate transport -is_a: GO:0006820 {is_inferred="true"} ! anion transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport +is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] id: GO:1901350 ! cell-cell signaling involved in cell-cell junction organization @@ -69774,6 +70678,7 @@ [Term] id: GO:1901369 ! cyclic 2,3-bisphospho-D-glycerate biosynthetic process is_a: GO:0006796 {is_inferred="true"} ! phosphate-containing compound metabolic process +is_a: GO:0046175 {is_inferred="true"} ! aldonic acid biosynthetic process is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process @@ -70008,11 +70913,13 @@ id: GO:1901413 ! regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process is_a: GO:0051196 {is_inferred="true"} ! regulation of coenzyme metabolic process is_a: GO:1901463 {is_inferred="true"} ! regulation of tetrapyrrole biosynthetic process [Term] id: GO:1901414 ! negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:0051175 {is_inferred="true"} ! negative regulation of sulfur metabolic process is_a: GO:0051198 {is_inferred="true"} ! negative regulation of coenzyme metabolic process @@ -70021,6 +70928,7 @@ [Term] id: GO:1901415 ! positive regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:0051176 {is_inferred="true"} ! positive regulation of sulfur metabolic process is_a: GO:0051197 {is_inferred="true"} ! positive regulation of coenzyme metabolic process @@ -70307,7 +71215,7 @@ [Term] id: GO:1901475 ! pyruvate transmembrane transport is_a: GO:0006848 {is_inferred="true"} ! pyruvate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1901476 ! carbohydrate transporter activity @@ -70329,7 +71237,7 @@ [Term] id: GO:1901480 ! oleate transporter activity -is_a: GO:0005319 {is_inferred="true"} ! lipid transporter activity +is_a: GO:0005324 {is_inferred="true"} ! long-chain fatty acid transporter activity [Term] id: GO:1901481 ! L-glutamate import involved in cellular response to nitrogen starvation @@ -70388,19 +71296,16 @@ [Term] id: GO:1901494 ! regulation of cysteine metabolic process -is_a: GO:0031323 {is_inferred="true"} ! regulation of cellular metabolic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:0031335 {is_inferred="true"} ! regulation of sulfur amino acid metabolic process [Term] id: GO:1901495 ! negative regulation of cysteine metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0031336 {is_inferred="true"} ! negative regulation of sulfur amino acid metabolic process is_a: GO:1901494 {is_inferred="true"} ! regulation of cysteine metabolic process [Term] id: GO:1901496 ! positive regulation of cysteine metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:0031337 {is_inferred="true"} ! positive regulation of sulfur amino acid metabolic process is_a: GO:1901494 {is_inferred="true"} ! regulation of cysteine metabolic process [Term] @@ -70533,6 +71438,8 @@ [Term] id: GO:1901523 ! icosanoid catabolic process +is_a: GO:0006690 {is_inferred="true"} ! icosanoid metabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:1901569 {is_inferred="true"} ! fatty acid derivative catabolic process [Term] @@ -70568,8 +71475,9 @@ [Term] id: GO:1901530 ! response to hypochlorite +is_a: GO:0000302 {is_inferred="true"} ! response to reactive oxygen species +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1901531 ! hypochlorite binding @@ -70674,8 +71582,8 @@ [Term] id: GO:1901549 ! malonic acid uptake transmembrane transporter activity -is_a: GO:0005310 {is_inferred="true"} ! dicarboxylic acid transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity +is_a: GO:1901239 {is_inferred="true"} ! malonate(1-) transmembrane transporter activity [Term] id: GO:1901550 ! regulation of endothelial cell development @@ -70934,7 +71842,7 @@ [Term] id: GO:1901602 ! dethiobiotin binding is_a: GO:0033218 {is_inferred="true"} ! amide binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -70953,19 +71861,16 @@ [Term] id: GO:1901605 ! alpha-amino acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process +is_a: GO:0006520 {is_inferred="true"} ! cellular amino acid metabolic process [Term] id: GO:1901606 ! alpha-amino acid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process -is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process +is_a: GO:0009063 {is_inferred="true"} ! cellular amino acid catabolic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] id: GO:1901607 ! alpha-amino acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process +is_a: GO:0008652 {is_inferred="true"} ! cellular amino acid biosynthetic process is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process [Term] @@ -71346,16 +72251,16 @@ [Term] id: GO:1901688 ! pantothenate import is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] id: GO:1901689 ! biotin import -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0042886 {is_inferred="true"} ! amide transport -is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport +is_a: GO:0015878 {is_inferred="true"} ! biotin transport [Term] id: GO:1901690 ! dethiobiotin import -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0042886 {is_inferred="true"} ! amide transport [Term] @@ -71379,6 +72284,7 @@ [Term] id: GO:1901695 ! tyramine biosynthetic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901162 {is_inferred="true"} ! primary amino compound biosynthetic process [Term] @@ -71387,10 +72293,10 @@ [Term] id: GO:1901697 ! olivetolic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process [Term] id: GO:1901698 ! response to nitrogen compound @@ -71420,7 +72326,7 @@ [Term] id: GO:1901704 ! L-glutamine biosynthetic process -is_a: GO:0009084 {is_inferred="true"} ! glutamine family amino acid biosynthetic process +is_a: GO:0006542 {is_inferred="true"} ! glutamine biosynthetic process [Term] id: GO:1901705 ! L-isoleucine biosynthetic process @@ -71433,8 +72339,7 @@ [Term] id: GO:1901707 ! leptomycin B binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -71544,23 +72449,23 @@ [Term] id: GO:1901728 ! monensin A metabolic process is_a: GO:0006066 {is_inferred="true"} ! alcohol metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process [Term] id: GO:1901729 ! monensin A catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0046164 {is_inferred="true"} ! alcohol catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901728 {is_inferred="true"} ! monensin A metabolic process [Term] id: GO:1901730 ! monensin A biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0046165 {is_inferred="true"} ! alcohol biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901728 {is_inferred="true"} ! monensin A metabolic process @@ -71590,18 +72495,18 @@ [Term] id: GO:1901735 ! (R)-mevalonic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:1901736 ! (R)-mevalonic acid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process is_a: GO:1901735 {is_inferred="true"} ! (R)-mevalonic acid metabolic process [Term] id: GO:1901737 ! (R)-mevalonic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process is_a: GO:1901735 {is_inferred="true"} ! (R)-mevalonic acid metabolic process @@ -71630,6 +72535,7 @@ [Term] id: GO:1901742 ! 2-deoxystreptamine metabolic process is_a: GO:0019751 {is_inferred="true"} ! polyol metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901743 ! 2-deoxystreptamine catabolic process @@ -71657,47 +72563,45 @@ [Term] id: GO:1901748 ! leukotriene D4 metabolic process +is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process -is_a: GO:1901568 {is_inferred="true"} ! fatty acid derivative metabolic process [Term] id: GO:1901749 ! leukotriene D4 catabolic process +is_a: GO:0036100 {is_inferred="true"} ! leukotriene catabolic process is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process -is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process is_a: GO:1901748 {is_inferred="true"} ! leukotriene D4 metabolic process [Term] id: GO:1901750 ! leukotriene D4 biosynthetic process +is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process is_a: GO:0044272 {is_inferred="true"} ! sulfur compound biosynthetic process -is_a: GO:1901570 {is_inferred="true"} ! fatty acid derivative biosynthetic process is_a: GO:1901748 {is_inferred="true"} ! leukotriene D4 metabolic process [Term] id: GO:1901751 ! leukotriene A4 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process +is_a: GO:0006691 {is_inferred="true"} ! leukotriene metabolic process +is_a: GO:0031407 {is_inferred="true"} ! oxylipin metabolic process is_a: GO:0097176 {is_inferred="true"} ! epoxide metabolic process -is_a: GO:1901568 {is_inferred="true"} ! fatty acid derivative metabolic process [Term] id: GO:1901752 ! leukotriene A4 catabolic process -is_a: GO:0016042 {is_inferred="true"} ! lipid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0036100 {is_inferred="true"} ! leukotriene catabolic process +is_a: GO:0042758 {is_inferred="true"} ! long-chain fatty acid catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process -is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process is_a: GO:1901751 {is_inferred="true"} ! leukotriene A4 metabolic process [Term] id: GO:1901753 ! leukotriene A4 biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019370 {is_inferred="true"} ! leukotriene biosynthetic process +is_a: GO:0031408 {is_inferred="true"} ! oxylipin biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process -is_a: GO:1901570 {is_inferred="true"} ! fatty acid derivative biosynthetic process is_a: GO:1901751 {is_inferred="true"} ! leukotriene A4 metabolic process [Term] @@ -71759,15 +72663,16 @@ [Term] id: GO:1901764 ! phosphinothricin metabolic process is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process +is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:1901765 ! phosphinothricin catabolic process -is_a: GO:0009056 {is_inferred="true"} ! catabolic process +is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process is_a: GO:1901764 {is_inferred="true"} ! phosphinothricin metabolic process [Term] id: GO:1901766 ! phosphinothricin biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process is_a: GO:1901764 {is_inferred="true"} ! phosphinothricin metabolic process [Term] @@ -71850,15 +72755,15 @@ [Term] id: GO:1901778 ! pentalenolactone metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006714 {is_inferred="true"} ! sesquiterpenoid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0097176 {is_inferred="true"} ! epoxide metabolic process is_a: GO:1901334 {is_inferred="true"} ! lactone metabolic process [Term] id: GO:1901779 ! pentalenolactone catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0016107 {is_inferred="true"} ! sesquiterpenoid catabolic process +is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901335 {is_inferred="true"} ! lactone catabolic process is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process is_a: GO:1901778 {is_inferred="true"} ! pentalenolactone metabolic process @@ -71865,8 +72770,8 @@ [Term] id: GO:1901780 ! pentalenolactone biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0016106 {is_inferred="true"} ! sesquiterpenoid biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:1901336 {is_inferred="true"} ! lactone biosynthetic process is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process is_a: GO:1901778 {is_inferred="true"} ! pentalenolactone metabolic process @@ -71874,15 +72779,20 @@ [Term] id: GO:1901781 ! p-cumate metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042537 {is_inferred="true"} ! benzene-containing compound metabolic process [Term] id: GO:1901782 ! p-cumate catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901781 {is_inferred="true"} ! p-cumate metabolic process [Term] id: GO:1901783 ! p-cumate biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901781 {is_inferred="true"} ! p-cumate metabolic process [Term] @@ -72195,16 +73105,25 @@ [Term] id: GO:1901847 ! nicotinate metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process +is_a: GO:0009820 {is_inferred="true"} ! alkaloid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0072524 {is_inferred="true"} ! pyridine-containing compound metabolic process [Term] id: GO:1901848 ! nicotinate catabolic process +is_a: GO:0009822 {is_inferred="true"} ! alkaloid catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:0072526 {is_inferred="true"} ! pyridine-containing compound catabolic process is_a: GO:1901847 {is_inferred="true"} ! nicotinate metabolic process [Term] id: GO:1901849 ! nicotinate biosynthetic process +is_a: GO:0009821 {is_inferred="true"} ! alkaloid biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process is_a: GO:1901847 {is_inferred="true"} ! nicotinate metabolic process [Term] @@ -72229,6 +73148,7 @@ [Term] id: GO:1901853 ! 5,6,7,8-tetrahydrosarcinapterin metabolic process +is_a: GO:0072350 {is_inferred="true"} ! tricarboxylic acid metabolic process is_a: GO:2001117 {is_inferred="true"} ! tetrahydromethanopterin metabolic process [Term] @@ -72235,10 +73155,12 @@ id: GO:1901854 ! 5,6,7,8-tetrahydrosarcinapterin catabolic process is_a: GO:0042560 {is_inferred="true"} ! pteridine-containing compound catabolic process is_a: GO:0046434 {is_inferred="true"} ! organophosphate catabolic process +is_a: GO:0072352 {is_inferred="true"} ! tricarboxylic acid catabolic process is_a: GO:1901853 {is_inferred="true"} ! 5,6,7,8-tetrahydrosarcinapterin metabolic process [Term] id: GO:1901855 ! 5,6,7,8-tetrahydrosarcinapterin biosynthetic process +is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process is_a: GO:1901853 {is_inferred="true"} ! 5,6,7,8-tetrahydrosarcinapterin metabolic process is_a: GO:2001118 {is_inferred="true"} ! tetrahydromethanopterin biosynthetic process @@ -72300,6 +73222,7 @@ [Term] id: GO:1901867 ! ecgonine methyl ester metabolic process is_a: GO:0046448 {is_inferred="true"} ! tropane alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901868 ! ecgonine methyl ester catabolic process @@ -72317,6 +73240,7 @@ id: GO:1901870 ! ecgonone methyl ester metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process is_a: GO:0046448 {is_inferred="true"} ! tropane alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:1901871 ! ecgonone methyl ester catabolic process @@ -72836,7 +73760,8 @@ [Term] id: GO:1901973 ! proline binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -72846,8 +73771,9 @@ [Term] id: GO:1901975 ! glycerate transmembrane transport +is_a: GO:0034219 {is_inferred="true"} ! carbohydrate transmembrane transport is_a: GO:0042873 {is_inferred="true"} ! aldonate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1901976 ! regulation of cell cycle checkpoint @@ -72960,7 +73886,7 @@ [Term] id: GO:1901997 ! negative regulation of indoleacetic acid biosynthetic process via tryptophan is_a: GO:0032353 {is_inferred="true"} ! negative regulation of hormone biosynthetic process -is_a: GO:0033239 {is_inferred="true"} ! negative regulation of cellular amine metabolic process +is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:0090356 {is_inferred="true"} ! negative regulation of auxin metabolic process is_a: GO:1901996 {is_inferred="true"} ! regulation of indoleacetic acid biosynthetic process via tryptophan @@ -72970,16 +73896,18 @@ [Term] id: GO:1901999 ! homogentisate metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] id: GO:1902000 ! homogentisate catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process is_a: GO:1901999 {is_inferred="true"} ! homogentisate metabolic process [Term] id: GO:1902001 ! fatty acid transmembrane transport -is_a: GO:0006869 {is_inferred="true"} ! lipid transport +is_a: GO:0015908 {is_inferred="true"} ! fatty acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] @@ -73075,16 +74003,18 @@ [Term] id: GO:1902022 ! L-lysine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport +is_a: GO:0015819 {is_inferred="true"} ! lysine transport [Term] id: GO:1902023 ! L-arginine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport +is_a: GO:0015809 {is_inferred="true"} ! arginine transport [Term] id: GO:1902024 ! L-histidine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport -is_a: GO:0045117 {is_inferred="true"} ! azole transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport +is_a: GO:0015817 {is_inferred="true"} ! histidine transport [Term] id: GO:1902025 ! nitrate import @@ -73223,11 +74153,13 @@ [Term] id: GO:1902051 ! (25S)-Delta(4)-dafachronate binding -is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding +is_a: GO:1990239 {is_inferred="true"} ! steroid hormone binding [Term] id: GO:1902052 ! (25S)-Delta(7)-dafachronate binding -is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding +is_a: GO:1990239 {is_inferred="true"} ! steroid hormone binding [Term] id: GO:1902053 ! regulation of neosartoricin biosynthetic process @@ -73248,11 +74180,15 @@ [Term] id: GO:1902056 ! (25S)-Delta(7)-dafachronate metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process +is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process [Term] id: GO:1902057 ! (25S)-Delta(4)-dafachronate metabolic process -is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process +is_a: GO:0008202 {is_inferred="true"} ! steroid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process [Term] id: GO:1902058 ! regulation of sporocarp development involved in sexual reproduction @@ -73292,8 +74228,7 @@ [Term] id: GO:1902065 ! response to L-glutamate -is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] id: GO:1902066 ! regulation of cell wall pectin metabolic process @@ -73303,7 +74238,7 @@ [Term] id: GO:1902067 ! silicic acid import -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0015708 {is_inferred="true"} ! silicate transport [Term] id: GO:1902068 ! regulation of sphingolipid mediated signaling pathway @@ -73361,8 +74296,8 @@ [Term] id: GO:1902079 ! D-valine catabolic process -is_a: GO:0009083 {is_inferred="true"} ! branched-chain amino acid catabolic process -is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process +is_a: GO:0006574 {is_inferred="true"} ! valine catabolic process +is_a: GO:0019478 {is_inferred="true"} ! D-amino acid catabolic process is_a: GO:1902114 {is_inferred="true"} ! D-valine metabolic process [Term] @@ -73389,12 +74324,12 @@ [Term] id: GO:1902084 ! fumagillin metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0019752 {is_inferred="true"} ! carboxylic acid metabolic process is_a: GO:0097176 {is_inferred="true"} ! epoxide metabolic process [Term] id: GO:1902085 ! fumagillin catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0046395 {is_inferred="true"} ! carboxylic acid catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901502 {is_inferred="true"} ! ether catabolic process @@ -73402,8 +74337,8 @@ [Term] id: GO:1902086 ! fumagillin biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0046394 {is_inferred="true"} ! carboxylic acid biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901503 {is_inferred="true"} ! ether biosynthetic process is_a: GO:1902084 {is_inferred="true"} ! fumagillin metabolic process @@ -73546,8 +74481,8 @@ [Term] id: GO:1902114 ! D-valine metabolic process -is_a: GO:0009081 {is_inferred="true"} ! branched-chain amino acid metabolic process -is_a: GO:1901605 {is_inferred="true"} ! alpha-amino acid metabolic process +is_a: GO:0006573 {is_inferred="true"} ! valine metabolic process +is_a: GO:0046416 {is_inferred="true"} ! D-amino acid metabolic process [Term] id: GO:1902115 ! regulation of organelle assembly @@ -73583,13 +74518,11 @@ [Term] id: GO:1902121 ! lithocholic acid binding -is_a: GO:0005496 {is_inferred="true"} ! steroid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0032052 {is_inferred="true"} ! bile acid binding [Term] id: GO:1902122 ! chenodeoxycholic acid binding -is_a: GO:0005496 {is_inferred="true"} ! steroid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0032052 {is_inferred="true"} ! bile acid binding [Term] id: GO:1902123 ! (-)-pinoresinol catabolic process @@ -73934,62 +74867,58 @@ [Term] id: GO:1902189 ! 2-methylbutanoyl-CoA(4-) metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0035337 {is_inferred="true"} ! fatty-acyl-CoA metabolic process [Term] id: GO:1902190 ! 2-methylbutanoyl-CoA(4-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0036115 {is_inferred="true"} ! fatty-acyl-CoA catabolic process is_a: GO:1902189 {is_inferred="true"} ! 2-methylbutanoyl-CoA(4-) metabolic process [Term] id: GO:1902191 ! 2-methylbutanoyl-CoA(4-) biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046949 {is_inferred="true"} ! fatty-acyl-CoA biosynthetic process is_a: GO:1902189 {is_inferred="true"} ! 2-methylbutanoyl-CoA(4-) metabolic process [Term] id: GO:1902192 ! 2-methylbut-2-enoyl-CoA(4-) metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0035337 {is_inferred="true"} ! fatty-acyl-CoA metabolic process [Term] id: GO:1902193 ! 2-methylbut-2-enoyl-CoA(4-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0036115 {is_inferred="true"} ! fatty-acyl-CoA catabolic process is_a: GO:1902192 {is_inferred="true"} ! 2-methylbut-2-enoyl-CoA(4-) metabolic process [Term] id: GO:1902194 ! 2-methylbut-2-enoyl-CoA(4-) biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046949 {is_inferred="true"} ! fatty-acyl-CoA biosynthetic process is_a: GO:1902192 {is_inferred="true"} ! 2-methylbut-2-enoyl-CoA(4-) metabolic process [Term] id: GO:1902195 ! isovaleryl-CoA(4-) metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0035337 {is_inferred="true"} ! fatty-acyl-CoA metabolic process [Term] id: GO:1902196 ! isovaleryl-CoA(4-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0036115 {is_inferred="true"} ! fatty-acyl-CoA catabolic process is_a: GO:1902195 {is_inferred="true"} ! isovaleryl-CoA(4-) metabolic process [Term] id: GO:1902197 ! isovaleryl-CoA(4-) biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046949 {is_inferred="true"} ! fatty-acyl-CoA biosynthetic process is_a: GO:1902195 {is_inferred="true"} ! isovaleryl-CoA(4-) metabolic process [Term] id: GO:1902198 ! 3-methylbut-2-enoyl-CoA(4-) metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0035337 {is_inferred="true"} ! fatty-acyl-CoA metabolic process [Term] id: GO:1902199 ! 3-methylbut-2-enoyl-CoA(4-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0036115 {is_inferred="true"} ! fatty-acyl-CoA catabolic process is_a: GO:1902198 {is_inferred="true"} ! 3-methylbut-2-enoyl-CoA(4-) metabolic process [Term] id: GO:1902200 ! 3-methylbut-2-enoyl-CoA(4-) biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0046949 {is_inferred="true"} ! fatty-acyl-CoA biosynthetic process is_a: GO:1902198 {is_inferred="true"} ! 3-methylbut-2-enoyl-CoA(4-) metabolic process [Term] @@ -74196,17 +75125,19 @@ [Term] id: GO:1902241 ! copal-8-ol diphosphate(3-) metabolic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process +is_a: GO:0016101 {is_inferred="true"} ! diterpenoid metabolic process [Term] id: GO:1902242 ! copal-8-ol diphosphate(3-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0009395 {is_inferred="true"} ! phospholipid catabolic process +is_a: GO:0016103 {is_inferred="true"} ! diterpenoid catabolic process is_a: GO:1902241 {is_inferred="true"} ! copal-8-ol diphosphate(3-) metabolic process [Term] id: GO:1902243 ! copal-8-ol diphosphate(3-) biosynthetic process -is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process +is_a: GO:0008654 {is_inferred="true"} ! phospholipid biosynthetic process +is_a: GO:0016102 {is_inferred="true"} ! diterpenoid biosynthetic process is_a: GO:1902241 {is_inferred="true"} ! copal-8-ol diphosphate(3-) metabolic process [Term] @@ -74234,11 +75165,13 @@ [Term] id: GO:1902248 ! 5-O-phosphono-alpha-D-ribofuranosyl diphosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding [Term] id: GO:1902249 ! IMP binding is_a: GO:0032555 {is_inferred="true"} ! purine ribonucleotide binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding [Term] id: GO:1902250 ! regulation of erythrocyte apoptotic process @@ -74314,6 +75247,7 @@ [Term] id: GO:1902265 ! abscisic acid homeostasis is_a: GO:0055081 {is_inferred="true"} ! anion homeostasis +is_a: GO:0055088 {is_inferred="true"} ! lipid homeostasis [Term] id: GO:1902266 ! cellular abscisic acid homeostasis @@ -74345,17 +75279,17 @@ [Term] id: GO:1902272 ! regulation of (R)-carnitine transmembrane transport -is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1902273 ! negative regulation of (R)-carnitine transmembrane transport -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:1902272 {is_inferred="true"} ! regulation of (R)-carnitine transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport [Term] id: GO:1902274 ! positive regulation of (R)-carnitine transmembrane transport -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:1902272 {is_inferred="true"} ! regulation of (R)-carnitine transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport [Term] id: GO:1902275 ! regulation of chromatin organization @@ -74575,25 +75509,21 @@ [Term] id: GO:1902321 ! methyl-branched fatty acid biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0006633 {is_inferred="true"} ! fatty acid biosynthetic process is_a: GO:0097089 {is_inferred="true"} ! methyl-branched fatty acid metabolic process [Term] id: GO:1902322 ! regulation of methyl-branched fatty acid biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0046890 {is_inferred="true"} ! regulation of lipid biosynthetic process +is_a: GO:0042304 {is_inferred="true"} ! regulation of fatty acid biosynthetic process [Term] id: GO:1902323 ! negative regulation of methyl-branched fatty acid biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0051055 {is_inferred="true"} ! negative regulation of lipid biosynthetic process +is_a: GO:0045717 {is_inferred="true"} ! negative regulation of fatty acid biosynthetic process is_a: GO:1902322 {is_inferred="true"} ! regulation of methyl-branched fatty acid biosynthetic process [Term] id: GO:1902324 ! positive regulation of methyl-branched fatty acid biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0046889 {is_inferred="true"} ! positive regulation of lipid biosynthetic process +is_a: GO:0045723 {is_inferred="true"} ! positive regulation of fatty acid biosynthetic process is_a: GO:1902322 {is_inferred="true"} ! regulation of methyl-branched fatty acid biosynthetic process [Term] @@ -74745,12 +75675,12 @@ [Term] id: GO:1902356 ! oxaloacetate(2-) transmembrane transport is_a: GO:0015729 {is_inferred="true"} ! oxaloacetate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1902357 ! 2-isopropylmalate(2-) transmembrane transport is_a: GO:0034659 {is_inferred="true"} ! isopropylmalate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1902358 ! sulfate transmembrane transport @@ -74877,16 +75807,25 @@ [Term] id: GO:1902384 ! glycyrrhetinate metabolic process +is_a: GO:0019742 {is_inferred="true"} ! pentacyclic triterpenoid metabolic process is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process +is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process [Term] id: GO:1902385 ! glycyrrhetinate catabolic process +is_a: GO:0019741 {is_inferred="true"} ! pentacyclic triterpenoid catabolic process +is_a: GO:0042182 {is_inferred="true"} ! ketone catabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process is_a: GO:1902384 {is_inferred="true"} ! glycyrrhetinate metabolic process [Term] id: GO:1902386 ! glycyrrhetinate biosynthetic process +is_a: GO:0019745 {is_inferred="true"} ! pentacyclic triterpenoid biosynthetic process +is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process is_a: GO:1902384 {is_inferred="true"} ! glycyrrhetinate metabolic process [Term] @@ -75156,6 +76095,7 @@ [Term] id: GO:1902444 ! riboflavin binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -75273,6 +76213,7 @@ [Term] id: GO:1902475 ! L-alpha-amino acid transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport [Term] id: GO:1902476 ! chloride transmembrane transport @@ -75318,7 +76259,8 @@ [Term] id: GO:1902485 ! L-cysteine binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0016597 {is_inferred="true"} ! amino acid binding +is_a: GO:0043169 {is_inferred="true"} ! cation binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -75465,6 +76407,7 @@ [Term] id: GO:1902516 ! sn-glycerol 3-phosphate binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097367 {is_inferred="true"} ! carbohydrate derivative binding [Term] @@ -75482,6 +76425,7 @@ [Term] id: GO:1902520 ! response to doxorubicin is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:1901654 {is_inferred="true"} ! response to ketone is_a: GO:1903416 {is_inferred="true"} ! response to glycoside @@ -75492,6 +76436,7 @@ [Term] id: GO:1902522 ! response to 4'-epidoxorubicin +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:1901654 {is_inferred="true"} ! response to ketone is_a: GO:1903416 {is_inferred="true"} ! response to glycoside @@ -75652,15 +76597,18 @@ id: GO:1902557 ! 5'-adenylyl sulfate transmembrane transporter activity is_a: GO:0000295 {is_inferred="true"} ! adenine nucleotide transmembrane transporter activity is_a: GO:0005346 {is_inferred="true"} ! purine ribonucleotide transmembrane transporter activity +is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity is_a: GO:1901682 {is_inferred="true"} ! sulfur compound transmembrane transporter activity [Term] id: GO:1902558 ! 5'-adenylyl sulfate transmembrane transport +is_a: GO:0015711 {is_inferred="true"} ! organic anion transport is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport is_a: GO:0015868 {is_inferred="true"} ! purine ribonucleotide transport is_a: GO:0051503 {is_inferred="true"} ! adenine nucleotide transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport [Term] @@ -75667,6 +76615,7 @@ id: GO:1902559 ! 3'-phospho-5'-adenylyl sulfate transmembrane transport is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport is_a: GO:0046963 {is_inferred="true"} ! 3'-phosphoadenosine 5'-phosphosulfate transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport [Term] @@ -75858,8 +76807,8 @@ [Term] id: GO:1902598 ! creatine transmembrane transport +is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0015881 {is_inferred="true"} ! creatine transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport [Term] id: GO:1902599 ! sulfathiazole transmembrane transport @@ -75882,12 +76831,13 @@ [Term] id: GO:1902603 ! carnitine transmembrane transport is_a: GO:0015879 {is_inferred="true"} ! carnitine transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0072488 {is_inferred="true"} ! ammonium transmembrane transport [Term] id: GO:1902604 ! p-aminobenzoyl-glutamate transmembrane transport is_a: GO:0015814 {is_inferred="true"} ! p-aminobenzoyl-glutamate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0035442 {is_inferred="true"} ! dipeptide transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] id: GO:1902605 ! heterotrimeric G-protein complex assembly @@ -75912,8 +76862,8 @@ [Term] id: GO:1902609 ! (R)-2-hydroxy-alpha-linolenic acid biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process [Term] @@ -75950,11 +76900,12 @@ [Term] id: GO:1902617 ! response to fluoride +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance [Term] id: GO:1902618 ! cellular response to fluoride -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1902617 {is_inferred="true"} ! response to fluoride [Term] @@ -76330,13 +77281,12 @@ [Term] id: GO:1902696 ! glycine catabolic process to isobutanol -is_a: GO:0009071 {is_inferred="true"} ! serine family amino acid catabolic process +is_a: GO:0006546 {is_inferred="true"} ! glycine catabolic process is_a: GO:1901960 {is_inferred="true"} ! isobutanol metabolic process [Term] id: GO:1902697 ! valine catabolic process to isobutanol -is_a: GO:0009083 {is_inferred="true"} ! branched-chain amino acid catabolic process -is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process +is_a: GO:0006574 {is_inferred="true"} ! valine catabolic process is_a: GO:1901960 {is_inferred="true"} ! isobutanol metabolic process [Term] @@ -76688,11 +77638,13 @@ [Term] id: GO:1902776 ! 6-sulfoquinovose(1-) metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process +is_a: GO:1901135 {is_inferred="true"} ! carbohydrate derivative metabolic process [Term] id: GO:1902777 ! 6-sulfoquinovose(1-) catabolic process -is_a: GO:1901575 {is_inferred="true"} ! organic substance catabolic process +is_a: GO:0044273 {is_inferred="true"} ! sulfur compound catabolic process +is_a: GO:1901136 {is_inferred="true"} ! carbohydrate derivative catabolic process is_a: GO:1902776 {is_inferred="true"} ! 6-sulfoquinovose(1-) metabolic process [Term] @@ -76921,6 +77873,7 @@ [Term] id: GO:1902825 ! proline import into cell +is_a: GO:0015824 {is_inferred="true"} ! proline transport is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell [Term] @@ -76964,6 +77917,7 @@ [Term] id: GO:1902834 ! regulation of proline import into cell is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import +is_a: GO:0070881 {is_inferred="true"} ! regulation of proline transport [Term] id: GO:1902835 ! negative regulation of proline import into cell @@ -77420,8 +78374,7 @@ [Term] id: GO:1902925 ! poly(hydroxyalkanoate) biosynthetic process from fatty acid -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process is_a: GO:1901441 {is_inferred="true"} ! poly(hydroxyalkanoate) biosynthetic process @@ -78235,6 +79188,7 @@ id: GO:1903091 ! pyridoxamine transmembrane transport is_a: GO:0031922 {is_inferred="true"} ! pyridoxamine transport is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport +is_a: GO:0072488 {is_inferred="true"} ! ammonium transmembrane transport [Term] id: GO:1903092 ! pyridoxine transmembrane transport @@ -78670,20 +79624,17 @@ [Term] id: GO:1903195 ! regulation of L-dopa biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:2000282 {is_inferred="true"} ! regulation of cellular amino acid biosynthetic process [Term] id: GO:1903196 ! negative regulation of L-dopa biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1903195 {is_inferred="true"} ! regulation of L-dopa biosynthetic process +is_a: GO:2000283 {is_inferred="true"} ! negative regulation of cellular amino acid biosynthetic process [Term] id: GO:1903197 ! positive regulation of L-dopa biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1903195 {is_inferred="true"} ! regulation of L-dopa biosynthetic process +is_a: GO:2000284 {is_inferred="true"} ! positive regulation of cellular amino acid biosynthetic process [Term] id: GO:1903198 ! regulation of L-dopa decarboxylase activity @@ -78811,6 +79762,7 @@ [Term] id: GO:1903222 ! quinolinic acid transmembrane transport +is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport @@ -78933,20 +79885,17 @@ [Term] id: GO:1903248 ! regulation of citrulline biosynthetic process -is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process -is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:2000282 {is_inferred="true"} ! regulation of cellular amino acid biosynthetic process [Term] id: GO:1903249 ! negative regulation of citrulline biosynthetic process -is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1903248 {is_inferred="true"} ! regulation of citrulline biosynthetic process +is_a: GO:2000283 {is_inferred="true"} ! negative regulation of cellular amino acid biosynthetic process [Term] id: GO:1903250 ! positive regulation of citrulline biosynthetic process -is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1903248 {is_inferred="true"} ! regulation of citrulline biosynthetic process +is_a: GO:2000284 {is_inferred="true"} ! positive regulation of cellular amino acid biosynthetic process [Term] id: GO:1903251 ! multi-ciliated epithelial cell differentiation @@ -79422,15 +80371,19 @@ [Term] id: GO:1903350 ! response to dopamine +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:0071869 {is_inferred="true"} ! response to catecholamine [Term] id: GO:1903351 ! cellular response to dopamine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071870 {is_inferred="true"} ! cellular response to catecholamine stimulus is_a: GO:1903350 {is_inferred="true"} ! response to dopamine [Term] id: GO:1903352 ! L-ornithine transmembrane transport +is_a: GO:0015822 {is_inferred="true"} ! ornithine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] @@ -79682,6 +80635,7 @@ [Term] id: GO:1903401 ! L-lysine transmembrane transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902022 {is_inferred="true"} ! L-lysine transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport @@ -79735,6 +80689,7 @@ [Term] id: GO:1903411 ! L-ornithine import into cell +is_a: GO:0015822 {is_inferred="true"} ! ornithine transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] @@ -79960,6 +80915,7 @@ id: GO:1903457 ! lactate catabolic process is_a: GO:0006089 {is_inferred="true"} ! lactate metabolic process is_a: GO:0072329 {is_inferred="true"} ! monocarboxylic acid catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process [Term] id: GO:1903459 ! mitotic DNA replication lagging strand elongation @@ -80131,7 +81087,8 @@ [Term] id: GO:1903492 ! response to acetylsalicylate -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] @@ -80230,11 +81187,12 @@ [Term] id: GO:1903511 ! orotic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0072527 {is_inferred="true"} ! pyrimidine-containing compound metabolic process [Term] id: GO:1903512 ! phytanic acid metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:0097089 {is_inferred="true"} ! methyl-branched fatty acid metabolic process [Term] @@ -80390,13 +81348,11 @@ [Term] id: GO:1903544 ! response to butyrate -is_a: GO:0033993 {is_inferred="true"} ! response to lipid -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid [Term] id: GO:1903545 ! cellular response to butyrate -is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:0071398 {is_inferred="true"} ! cellular response to fatty acid is_a: GO:1903544 {is_inferred="true"} ! response to butyrate [Term] @@ -80645,6 +81601,7 @@ [Term] id: GO:1903593 ! regulation of histamine secretion by mast cell +is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport is_a: GO:0043304 {is_inferred="true"} ! regulation of mast cell degranulation is_a: GO:0046883 {is_inferred="true"} ! regulation of hormone secretion is_a: GO:0050727 {is_inferred="true"} ! regulation of inflammatory response @@ -80652,6 +81609,7 @@ [Term] id: GO:1903594 ! negative regulation of histamine secretion by mast cell +is_a: GO:0043271 {is_inferred="true"} ! negative regulation of ion transport is_a: GO:0043305 {is_inferred="true"} ! negative regulation of mast cell degranulation is_a: GO:0046888 {is_inferred="true"} ! negative regulation of hormone secretion is_a: GO:0050728 {is_inferred="true"} ! negative regulation of inflammatory response @@ -80660,6 +81618,7 @@ [Term] id: GO:1903595 ! positive regulation of histamine secretion by mast cell +is_a: GO:0043270 {is_inferred="true"} ! positive regulation of ion transport is_a: GO:0043306 {is_inferred="true"} ! positive regulation of mast cell degranulation is_a: GO:0046887 {is_inferred="true"} ! positive regulation of hormone secretion is_a: GO:0050729 {is_inferred="true"} ! positive regulation of inflammatory response @@ -80692,6 +81651,7 @@ [Term] id: GO:1903601 ! thermospermine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] @@ -81246,11 +82206,13 @@ [Term] id: GO:1903710 ! spermine transmembrane transport is_a: GO:0000296 {is_inferred="true"} ! spermine transport +is_a: GO:0072488 {is_inferred="true"} ! ammonium transmembrane transport is_a: GO:1902047 {is_inferred="true"} ! polyamine transmembrane transport [Term] id: GO:1903711 ! spermidine transmembrane transport is_a: GO:0015848 {is_inferred="true"} ! spermidine transport +is_a: GO:0072488 {is_inferred="true"} ! ammonium transmembrane transport is_a: GO:1902047 {is_inferred="true"} ! polyamine transmembrane transport [Term] @@ -81257,16 +82219,19 @@ id: GO:1903712 ! cysteine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0042883 {is_inferred="true"} ! cysteine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:1903713 ! asparagine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport -is_a: GO:0042886 {is_inferred="true"} ! amide transport +is_a: GO:0006867 {is_inferred="true"} ! asparagine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:1903714 ! isoleucine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0015818 {is_inferred="true"} ! isoleucine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:1903715 ! regulation of aerobic respiration @@ -81582,7 +82547,8 @@ [Term] id: GO:1903785 ! L-valine transmembrane transport -is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport +is_a: GO:0015829 {is_inferred="true"} ! valine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] @@ -81607,8 +82573,8 @@ [Term] id: GO:1903789 ! regulation of amino acid transmembrane transport -is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport +is_a: GO:1903959 {is_inferred="true"} ! regulation of anion transmembrane transport [Term] id: GO:1903790 ! guanine nucleotide transmembrane transport @@ -81706,6 +82672,7 @@ [Term] id: GO:1903809 ! L-proline import into cell +is_a: GO:0015824 {is_inferred="true"} ! proline transport is_a: GO:0043092 {is_inferred="true"} ! L-amino acid import [Term] @@ -81775,6 +82742,8 @@ [Term] id: GO:1903826 ! arginine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0015809 {is_inferred="true"} ! arginine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport [Term] id: GO:1903827 ! regulation of cellular protein localization @@ -81827,10 +82796,12 @@ [Term] id: GO:1903840 ! response to arsenite(3-) +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:1903842 {is_inferred="true"} ! response to arsenite ion [Term] id: GO:1903841 ! cellular response to arsenite(3-) +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1903840 {is_inferred="true"} ! response to arsenite(3-) is_a: GO:1903843 {is_inferred="true"} ! cellular response to arsenite ion @@ -82246,11 +83217,12 @@ [Term] id: GO:1903927 ! response to cyanide -is_a: GO:0042221 {is_inferred="true"} ! response to chemical +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical +is_a: GO:0010033 {is_inferred="true"} ! response to organic substance [Term] id: GO:1903928 ! cellular response to cyanide -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:1903927 {is_inferred="true"} ! response to cyanide [Term] @@ -82454,7 +83426,7 @@ [Term] id: GO:1903962 ! arachidonate transporter activity -is_a: GO:0005319 {is_inferred="true"} ! lipid transporter activity +is_a: GO:0005324 {is_inferred="true"} ! long-chain fatty acid transporter activity [Term] id: GO:1903963 ! arachidonate transport @@ -82463,19 +83435,16 @@ [Term] id: GO:1903964 ! monounsaturated fatty acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process [Term] id: GO:1903965 ! monounsaturated fatty acid catabolic process -is_a: GO:0016042 {is_inferred="true"} ! lipid catabolic process -is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process +is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process is_a: GO:1903964 {is_inferred="true"} ! monounsaturated fatty acid metabolic process [Term] id: GO:1903966 ! monounsaturated fatty acid biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process is_a: GO:1903964 {is_inferred="true"} ! monounsaturated fatty acid metabolic process [Term] @@ -82553,6 +83522,7 @@ [Term] id: GO:1903981 ! enterobactin binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding @@ -82675,11 +83645,13 @@ [Term] id: GO:1904014 ! response to serotonin is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion is_a: GO:0071867 {is_inferred="true"} ! response to monoamine is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1904015 ! cellular response to serotonin +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:0071868 {is_inferred="true"} ! cellular response to monoamine stimulus is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -84575,6 +85547,7 @@ [Term] id: GO:1904399 ! heparan sulfate binding is_a: GO:0005539 {is_inferred="true"} ! glycosaminoglycan binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -84838,7 +85811,6 @@ [Term] id: GO:1904448 ! regulation of aspartate secretion -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell @@ -84846,7 +85818,6 @@ id: GO:1904449 ! negative regulation of aspartate secretion is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:1904448 {is_inferred="true"} ! regulation of aspartate secretion [Term] @@ -84853,7 +85824,6 @@ id: GO:1904450 ! positive regulation of aspartate secretion is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:1904448 {is_inferred="true"} ! regulation of aspartate secretion [Term] @@ -85009,11 +85979,16 @@ [Term] id: GO:1904481 ! response to tetrahydrofolate -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical +is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1904482 ! cellular response to tetrahydrofolate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1904481 {is_inferred="true"} ! response to tetrahydrofolate @@ -85060,6 +86035,7 @@ [Term] id: GO:1904492 ! Ac-Asp-Glu binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1900750 {is_inferred="true"} ! oligopeptide binding [Term] @@ -85353,10 +86329,13 @@ [Term] id: GO:1904556 ! L-tryptophan transmembrane transport is_a: GO:0015827 {is_inferred="true"} ! tryptophan transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] id: GO:1904557 ! L-alanine transmembrane transport +is_a: GO:0015808 {is_inferred="true"} ! L-alanine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport [Term] @@ -85503,9 +86482,11 @@ [Term] id: GO:1904585 ! response to putrescine is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:1904586 ! cellular response to putrescine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound is_a: GO:1904585 {is_inferred="true"} ! response to putrescine @@ -85540,7 +86521,8 @@ [Term] id: GO:1904593 ! prostaglandin binding -is_a: GO:1901567 {is_inferred="true"} ! fatty acid derivative binding +is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding +is_a: GO:0050542 {is_inferred="true"} ! icosanoid binding [Term] id: GO:1904594 ! regulation of termination of RNA polymerase II transcription @@ -86388,8 +87370,7 @@ [Term] id: GO:1904767 ! octanoic acid binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding [Term] id: GO:1904768 ! all-trans-retinol binding @@ -86397,8 +87378,7 @@ [Term] id: GO:1904769 ! isopentadecanoic acid binding -is_a: GO:0008289 {is_inferred="true"} ! lipid binding -is_a: GO:0043177 {is_inferred="true"} ! organic acid binding +is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding [Term] id: GO:1904770 ! intramembranous bone morphogenesis @@ -87275,7 +88255,7 @@ [Term] id: GO:1904952 ! hydroxycinnamic acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport [Term] id: GO:1904953 ! Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation @@ -87436,6 +88416,8 @@ [Term] id: GO:1904983 ! transmembrane glycine transport from cytosol to mitochondrion +is_a: GO:0015816 {is_inferred="true"} ! glycine transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -87442,15 +88424,18 @@ [Term] id: GO:1904984 ! regulation of quinolinate biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process [Term] id: GO:1904985 ! negative regulation of quinolinate biosynthetic process is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process is_a: GO:1904984 {is_inferred="true"} ! regulation of quinolinate biosynthetic process [Term] id: GO:1904986 ! positive regulation of quinolinate biosynthetic process is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process +is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process is_a: GO:1904984 {is_inferred="true"} ! regulation of quinolinate biosynthetic process [Term] @@ -87529,14 +88514,14 @@ [Term] id: GO:1905003 ! picolinic acid metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process +is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process is_a: GO:0072524 {is_inferred="true"} ! pyridine-containing compound metabolic process [Term] id: GO:1905004 ! picolinic acid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process +is_a: GO:0072330 {is_inferred="true"} ! monocarboxylic acid biosynthetic process is_a: GO:0072525 {is_inferred="true"} ! pyridine-containing compound biosynthetic process is_a: GO:1905003 {is_inferred="true"} ! picolinic acid metabolic process @@ -87583,7 +88568,7 @@ [Term] id: GO:1905013 ! negative regulation of 'de novo' NAD biosynthetic process from tryptophan is_a: GO:0030809 {is_inferred="true"} ! negative regulation of nucleotide biosynthetic process -is_a: GO:0033239 {is_inferred="true"} ! negative regulation of cellular amine metabolic process +is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:1902689 {is_inferred="true"} ! negative regulation of NAD metabolic process is_a: GO:1905012 {is_inferred="true"} ! regulation of 'de novo' NAD biosynthetic process from tryptophan @@ -87725,6 +88710,8 @@ [Term] id: GO:1905039 ! carboxylic acid transmembrane transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1903825 {is_inferred="true"} ! organic acid transmembrane transport [Term] @@ -88192,6 +89179,7 @@ [Term] id: GO:1905135 ! biotin import across plasma membrane +is_a: GO:0035461 {is_inferred="true"} ! vitamin transmembrane transport is_a: GO:0044756 {is_inferred="true"} ! biotin import into cell is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport @@ -88504,6 +89492,7 @@ [Term] id: GO:1905200 ! gibberellic acid transmembrane transport +is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport is_a: GO:0046865 {is_inferred="true"} ! terpenoid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport @@ -88663,13 +89652,16 @@ [Term] id: GO:1905232 ! cellular response to L-glutamate is_a: GO:0071230 {is_inferred="true"} ! cellular response to amino acid stimulus +is_a: GO:1902065 {is_inferred="true"} ! response to L-glutamate [Term] id: GO:1905233 ! response to codeine is_a: GO:0014072 {is_inferred="true"} ! response to isoquinoline alkaloid +is_a: GO:0060359 {is_inferred="true"} ! response to ammonium ion [Term] id: GO:1905234 ! cellular response to codeine +is_a: GO:0071242 {is_inferred="true"} ! cellular response to ammonium ion is_a: GO:0071317 {is_inferred="true"} ! cellular response to isoquinoline alkaloid is_a: GO:1905233 {is_inferred="true"} ! response to codeine @@ -89140,6 +90132,7 @@ [Term] id: GO:1905329 ! sphingoid long-chain base transport +is_a: GO:0006869 {is_inferred="true"} ! lipid transport is_a: GO:0015695 {is_inferred="true"} ! organic cation transport is_a: GO:0015696 {is_inferred="true"} ! ammonium transport @@ -89212,6 +90205,8 @@ [Term] id: GO:1905344 ! prostaglandin catabolic process +is_a: GO:0006693 {is_inferred="true"} ! prostaglandin metabolic process +is_a: GO:0009062 {is_inferred="true"} ! fatty acid catabolic process is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process [Term] @@ -89501,18 +90496,21 @@ [Term] id: GO:1905407 ! regulation of creatine transmembrane transporter activity -is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity +is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport [Term] id: GO:1905408 ! negative regulation of creatine transmembrane transporter activity -is_a: GO:0032410 {is_inferred="true"} ! negative regulation of transporter activity -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport is_a: GO:1905407 {is_inferred="true"} ! regulation of creatine transmembrane transporter activity [Term] id: GO:1905409 ! positive regulation of creatine transmembrane transporter activity -is_a: GO:0032411 {is_inferred="true"} ! positive regulation of transporter activity -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:0032414 {is_inferred="true"} ! positive regulation of ion transmembrane transporter activity +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport is_a: GO:1905407 {is_inferred="true"} ! regulation of creatine transmembrane transporter activity [Term] @@ -89662,11 +90660,13 @@ [Term] id: GO:1905439 ! response to chondroitin 6'-sulfate +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1905440 ! cellular response to chondroitin 6'-sulfate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1905439 {is_inferred="true"} ! response to chondroitin 6'-sulfate @@ -89673,11 +90673,13 @@ [Term] id: GO:1905441 ! response to chondroitin 4'-sulfate +is_a: GO:0001101 {is_inferred="true"} ! response to acid chemical is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1905442 ! cellular response to chondroitin 4'-sulfate +is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1905441 {is_inferred="true"} ! response to chondroitin 4'-sulfate @@ -89959,6 +90961,7 @@ [Term] id: GO:1905502 ! acetyl-CoA binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] @@ -90097,17 +91100,20 @@ id: GO:1905532 ! regulation of leucine import across plasma membrane is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1905533 ! negative regulation of leucine import across plasma membrane -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:1903129 {is_inferred="true"} ! negative regulation of leucine import into cell +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane [Term] id: GO:1905534 ! positive regulation of leucine import across plasma membrane -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:1903130 {is_inferred="true"} ! positive regulation of leucine import into cell +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane [Term] @@ -90141,11 +91147,13 @@ id: GO:1905541 ! regulation of L-arginine import across plasma membrane is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1905542 ! negative regulation of L-arginine import across plasma membrane -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:1902827 {is_inferred="true"} ! negative regulation of L-arginine import into cell +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane [Term] @@ -90156,6 +91164,7 @@ [Term] id: GO:1905544 ! L-methionine import across plasma membrane is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport is_a: GO:1903813 {is_inferred="true"} ! L-methionine import into cell @@ -90287,21 +91296,26 @@ id: GO:1905572 ! ganglioside GM1 transport to membrane is_a: GO:0035627 {is_inferred="true"} ! ceramide transport is_a: GO:0046836 {is_inferred="true"} ! glycolipid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] id: GO:1905573 ! ganglioside GM1 binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905574 ! ganglioside GM2 binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905575 ! ganglioside GM3 binding +is_a: GO:0033293 {is_inferred="true"} ! monocarboxylic acid binding is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905576 ! ganglioside GT1b binding +is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] @@ -90364,8 +91378,9 @@ [Term] id: GO:1905589 ! positive regulation of L-arginine import across plasma membrane -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:1902828 {is_inferred="true"} ! positive regulation of L-arginine import into cell +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane [Term] @@ -90540,17 +91555,20 @@ id: GO:1905624 ! regulation of L-methionine import across plasma membrane is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1905625 ! negative regulation of L-methionine import across plasma membrane -is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1903960 {is_inferred="true"} ! negative regulation of anion transmembrane transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport is_a: GO:1905624 {is_inferred="true"} ! regulation of L-methionine import across plasma membrane [Term] id: GO:1905626 ! positive regulation of L-methionine import across plasma membrane -is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1903961 {is_inferred="true"} ! positive regulation of anion transmembrane transport +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport is_a: GO:1905624 {is_inferred="true"} ! regulation of L-methionine import across plasma membrane [Term] @@ -90881,19 +91899,16 @@ [Term] id: GO:1905693 ! regulation of phosphatidic acid biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process -is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process +is_a: GO:0071071 {is_inferred="true"} ! regulation of phospholipid biosynthetic process [Term] id: GO:1905694 ! negative regulation of phosphatidic acid biosynthetic process -is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process -is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process +is_a: GO:0071072 {is_inferred="true"} ! negative regulation of phospholipid biosynthetic process is_a: GO:1905693 {is_inferred="true"} ! regulation of phosphatidic acid biosynthetic process [Term] id: GO:1905695 ! positive regulation of phosphatidic acid biosynthetic process -is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process -is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process +is_a: GO:0071073 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process is_a: GO:1905693 {is_inferred="true"} ! regulation of phosphatidic acid biosynthetic process [Term] @@ -91101,8 +92116,8 @@ [Term] id: GO:1990123 ! L-glutamate import into cell -is_a: GO:0015813 {is_inferred="true"} ! L-glutamate transport -is_a: GO:0098657 {is_inferred="true"} ! import into cell +is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell +is_a: GO:1903802 {is_inferred="true"} ! L-glutamate(1-) import into cell [Term] id: GO:1990126 ! retrograde transport, endosome to plasma membrane @@ -91528,8 +92543,7 @@ [Term] id: GO:1990541 ! mitochondrial citrate transmembrane transport is_a: GO:0006843 {is_inferred="true"} ! mitochondrial citrate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport +is_a: GO:1990546 {is_inferred="true"} ! mitochondrial tricarboxylic acid transmembrane transport [Term] id: GO:1990543 ! mitochondrial S-adenosyl-L-methionine transmembrane transport @@ -91538,6 +92552,7 @@ [Term] id: GO:1990544 ! mitochondrial ATP transmembrane transport is_a: GO:0015860 {is_inferred="true"} ! purine nucleoside transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1901679 {is_inferred="true"} ! nucleotide transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport @@ -91544,6 +92559,8 @@ [Term] id: GO:1990545 ! mitochondrial thiamine pyrophosphate transmembrane transport is_a: GO:0072531 {is_inferred="true"} ! pyrimidine-containing compound transmembrane transport +is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91566,12 +92583,12 @@ [Term] id: GO:1990550 ! mitochondrial alpha-ketoglutarate transmembrane transport is_a: GO:0015742 {is_inferred="true"} ! alpha-ketoglutarate transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:1990551 ! mitochondrial 2-oxoadipate transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91598,8 +92615,7 @@ [Term] id: GO:1990558 ! mitochondrial malonate(1-) transmembrane transport -is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:1901553 {is_inferred="true"} ! malonic acid transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -91619,6 +92635,7 @@ [Term] id: GO:1990569 ! UDP-N-acetylglucosamine transmembrane transport is_a: GO:0090481 {is_inferred="true"} ! pyrimidine nucleotide-sugar transmembrane transport +is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:1990573 ! potassium ion import across plasma membrane @@ -91627,7 +92644,6 @@ [Term] id: GO:1990575 ! mitochondrial L-ornithine transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -92404,10 +93420,12 @@ id: GO:2000082 ! regulation of L-ascorbic acid biosynthetic process is_a: GO:0030656 {is_inferred="true"} ! regulation of vitamin metabolic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0043255 {is_inferred="true"} ! regulation of carbohydrate biosynthetic process [Term] id: GO:2000083 ! negative regulation of L-ascorbic acid biosynthetic process is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0045912 {is_inferred="true"} ! negative regulation of carbohydrate metabolic process is_a: GO:0046137 {is_inferred="true"} ! negative regulation of vitamin metabolic process is_a: GO:2000082 {is_inferred="true"} ! regulation of L-ascorbic acid biosynthetic process @@ -92951,11 +93969,13 @@ [Term] id: GO:2000191 ! regulation of fatty acid transport is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport +is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:2000192 ! negative regulation of fatty acid transport is_a: GO:0032369 {is_inferred="true"} ! negative regulation of lipid transport +is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:2000191 {is_inferred="true"} ! regulation of fatty acid transport @@ -92962,6 +93982,7 @@ [Term] id: GO:2000193 ! positive regulation of fatty acid transport is_a: GO:0032370 {is_inferred="true"} ! positive regulation of lipid transport +is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:2000191 {is_inferred="true"} ! regulation of fatty acid transport @@ -93061,20 +94082,17 @@ [Term] id: GO:2000212 ! negative regulation of glutamate metabolic process -is_a: GO:0031324 {is_inferred="true"} ! negative regulation of cellular metabolic process -is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process [Term] id: GO:2000213 ! positive regulation of glutamate metabolic process -is_a: GO:0031325 {is_inferred="true"} ! positive regulation of cellular metabolic process -is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process [Term] id: GO:2000214 ! regulation of proline metabolic process is_a: GO:0000820 {is_inferred="true"} ! regulation of glutamine family amino acid metabolic process -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process [Term] id: GO:2000215 ! negative regulation of proline metabolic process @@ -94475,19 +95493,16 @@ [Term] id: GO:2000485 ! regulation of glutamine transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:2000486 ! negative regulation of glutamine transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:2000485 {is_inferred="true"} ! regulation of glutamine transport [Term] id: GO:2000487 ! positive regulation of glutamine transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:2000485 {is_inferred="true"} ! regulation of glutamine transport [Term] @@ -97465,6 +98480,10 @@ is_a: GO:0030247 {is_inferred="true"} ! polysaccharide binding [Term] +id: GO:2001080 ! chitosan binding +is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding + +[Term] id: GO:2001081 ! (1->4)-beta-D-galactan binding is_a: GO:0030247 {is_inferred="true"} ! polysaccharide binding @@ -97648,6 +98667,7 @@ id: GO:2001121 ! coenzyme gamma-F420-2 biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0052649 {is_inferred="true"} ! coenzyme gamma-F420-2 metabolic process +is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process is_a: GO:0090407 {is_inferred="true"} ! organophosphate biosynthetic process is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process @@ -97690,11 +98710,13 @@ id: GO:2001129 ! methane biosynthetic process from dimethylamine is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:0015948 {is_inferred="true"} ! methanogenesis +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:2001130 ! methane biosynthetic process from trimethylamine is_a: GO:0009308 {is_inferred="true"} ! amine metabolic process is_a: GO:0015948 {is_inferred="true"} ! methanogenesis +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:2001131 ! methane biosynthetic process from dimethyl sulfide @@ -97704,6 +98726,7 @@ [Term] id: GO:2001132 ! methane biosynthetic process from 3-(methylthio)propionic acid is_a: GO:0006631 {is_inferred="true"} ! fatty acid metabolic process +is_a: GO:0006790 {is_inferred="true"} ! sulfur compound metabolic process is_a: GO:0015948 {is_inferred="true"} ! methanogenesis [Term] @@ -97732,15 +98755,18 @@ [Term] id: GO:2001138 ! regulation of phospholipid transport is_a: GO:0032368 {is_inferred="true"} ! regulation of lipid transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:2001139 ! negative regulation of phospholipid transport is_a: GO:0032369 {is_inferred="true"} ! negative regulation of lipid transport +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:2001138 {is_inferred="true"} ! regulation of phospholipid transport [Term] id: GO:2001140 ! positive regulation of phospholipid transport is_a: GO:0032370 {is_inferred="true"} ! positive regulation of lipid transport +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:2001138 {is_inferred="true"} ! regulation of phospholipid transport [Term] @@ -97752,9 +98778,11 @@ [Term] id: GO:2001142 ! nicotinate transport is_a: GO:0015718 {is_inferred="true"} ! monocarboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:2001143 ! N-methylnicotinate transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport is_a: GO:0015697 {is_inferred="true"} ! quaternary ammonium group transport [Term] @@ -98187,6 +99215,7 @@ [Term] id: GO:2001227 ! quercitrin binding +is_a: GO:0043168 {is_inferred="true"} ! anion binding is_a: GO:0097243 {is_inferred="true"} ! flavonoid binding [Term] @@ -98294,13 +99323,11 @@ [Term] id: GO:2001248 ! regulation of ammonia assimilation cycle -is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process is_a: GO:0006808 {is_inferred="true"} ! regulation of nitrogen utilization is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process [Term] id: GO:2001249 ! negative regulation of ammonia assimilation cycle -is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process is_a: GO:0045847 {is_inferred="true"} ! negative regulation of nitrogen utilization is_a: GO:2000212 {is_inferred="true"} ! negative regulation of glutamate metabolic process is_a: GO:2001248 {is_inferred="true"} ! regulation of ammonia assimilation cycle @@ -98307,7 +99334,6 @@ [Term] id: GO:2001250 ! positive regulation of ammonia assimilation cycle -is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process is_a: GO:0045848 {is_inferred="true"} ! positive regulation of nitrogen utilization is_a: GO:2000213 {is_inferred="true"} ! positive regulation of glutamate metabolic process is_a: GO:2001248 {is_inferred="true"} ! regulation of ammonia assimilation cycle @@ -98514,6 +99540,7 @@ [Term] id: GO:2001291 ! codeine metabolic process is_a: GO:0033076 {is_inferred="true"} ! isoquinoline alkaloid metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process is_a: GO:1901376 {is_inferred="true"} ! organic heteropentacyclic compound metabolic process [Term] @@ -98561,24 +99588,24 @@ [Term] id: GO:2001300 ! lipoxin metabolic process -is_a: GO:1901568 {is_inferred="true"} ! fatty acid derivative metabolic process +is_a: GO:0006690 {is_inferred="true"} ! icosanoid metabolic process +is_a: GO:0033559 {is_inferred="true"} ! unsaturated fatty acid metabolic process [Term] id: GO:2001301 ! lipoxin biosynthetic process -is_a: GO:1901570 {is_inferred="true"} ! fatty acid derivative biosynthetic process +is_a: GO:0006636 {is_inferred="true"} ! unsaturated fatty acid biosynthetic process +is_a: GO:0046456 {is_inferred="true"} ! icosanoid biosynthetic process is_a: GO:2001300 {is_inferred="true"} ! lipoxin metabolic process [Term] id: GO:2001302 ! lipoxin A4 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process is_a: GO:2001300 {is_inferred="true"} ! lipoxin metabolic process [Term] id: GO:2001303 ! lipoxin A4 biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process is_a: GO:2001301 {is_inferred="true"} ! lipoxin biosynthetic process is_a: GO:2001302 {is_inferred="true"} ! lipoxin A4 metabolic process @@ -98585,8 +99612,7 @@ [Term] id: GO:2001304 ! lipoxin B4 metabolic process -is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process -is_a: GO:0006629 {is_inferred="true"} ! lipid metabolic process +is_a: GO:0001676 {is_inferred="true"} ! long-chain fatty acid metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process is_a: GO:2001300 {is_inferred="true"} ! lipoxin metabolic process @@ -98598,8 +99624,7 @@ [Term] id: GO:2001306 ! lipoxin B4 biosynthetic process -is_a: GO:0008610 {is_inferred="true"} ! lipid biosynthetic process -is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process +is_a: GO:0042759 {is_inferred="true"} ! long-chain fatty acid biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process is_a: GO:2001301 {is_inferred="true"} ! lipoxin biosynthetic process is_a: GO:2001304 {is_inferred="true"} ! lipoxin B4 metabolic process @@ -98648,6 +99673,7 @@ [Term] id: GO:2001313 ! UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process is_a: GO:0006040 {is_inferred="true"} ! amino sugar metabolic process +is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process is_a: GO:0009225 {is_inferred="true"} ! nucleotide-sugar metabolic process [Term] ------------------------------------------------------------------------ r37058 | termgenie | 2016-11-17 13:09:42 -0800 (Thu, 17 Nov 2016) | 3 lines TermGenie commit for user: vw reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37058) +++ go_inferences.obo (working copy) @@ -90942,6 +90942,25 @@ is_a: GO:1905702 {is_inferred="true"} ! regulation of inhibitory synapse assembly [Term] +id: GO:1905705 ! cellular response to paclitaxel +is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid +is_a: GO:1901555 {is_inferred="true"} ! response to paclitaxel + +[Term] +id: GO:1905706 ! regulation of mitochondrial ATP synthesis coupled proton transport +is_a: GO:0010155 {is_inferred="true"} ! regulation of proton transport +is_a: GO:0032386 {is_inferred="true"} ! regulation of intracellular transport +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport +is_a: GO:2001169 {is_inferred="true"} ! regulation of ATP biosynthetic process + +[Term] +id: GO:1905707 ! negative regulation of mitochondrial ATP synthesis coupled proton transport +is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1905706 {is_inferred="true"} ! regulation of mitochondrial ATP synthesis coupled proton transport +is_a: GO:2001170 {is_inferred="true"} ! negative regulation of ATP biosynthetic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37055 | dph | 2016-11-17 11:25:19 -0800 (Thu, 17 Nov 2016) | 2 lines Fixed up definitions of blood vessel branching regulation terms. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37055) +++ go_inferences.obo (working copy) @@ -74304,7 +74304,7 @@ is_a: GO:1903818 {is_inferred="true"} ! positive regulation of voltage-gated potassium channel activity [Term] -id: GO:1902262 ! apoptotic process involved in patterning of blood vessels +id: GO:1902262 ! apoptotic process involved in blood vessel morphogenesis is_a: GO:0060561 {is_inferred="true"} ! apoptotic process involved in morphogenesis [Term] @@ -90193,22 +90193,22 @@ is_a: GO:1905550 {is_inferred="true"} ! regulation of protein localization to endoplasmic reticulum [Term] -id: GO:1905553 ! regulation of patterning of blood vessels +id: GO:1905553 ! regulation of blood vessel branching is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] -id: GO:1905554 ! negative regulation of patterning of blood vessels +id: GO:1905554 ! negative regulation of vessel branching is_a: GO:0016525 {is_inferred="true"} ! negative regulation of angiogenesis is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium -is_a: GO:1905553 {is_inferred="true"} ! regulation of patterning of blood vessels +is_a: GO:1905553 {is_inferred="true"} ! regulation of blood vessel branching [Term] -id: GO:1905555 ! positive regulation of patterning of blood vessels +id: GO:1905555 ! positive regulation blood vessel branching is_a: GO:0045766 {is_inferred="true"} ! positive regulation of angiogenesis is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium -is_a: GO:1905553 {is_inferred="true"} ! regulation of patterning of blood vessels +is_a: GO:1905553 {is_inferred="true"} ! regulation of blood vessel branching [Term] id: GO:1905556 ! ciliary vesicle assembly ------------------------------------------------------------------------ r37052 | dph | 2016-11-17 11:01:14 -0800 (Thu, 17 Nov 2016) | 2 lines GH10355-closed changes in entailments ------------------------------------------------------------------------ r37050 | dph | 2016-11-17 10:52:19 -0800 (Thu, 17 Nov 2016) | 2 lines GH12438-closed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37050) +++ go_inferences.obo (working copy) @@ -798,7 +798,7 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] -id: GO:0000751 ! mitotic cell cycle arrest in response to pheromone +id: GO:0000751 ! mitotic cell cycle G1 arrest in response to pheromone is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] ------------------------------------------------------------------------ r37035 | paola | 2016-11-17 01:55:14 -0800 (Thu, 17 Nov 2016) | 2 lines GH MP: GO:0007288 - sperm axoneme assembly #12790 - closed - added sperm axoneme assembly part_of flagellated sperm motility changes in entailments ------------------------------------------------------------------------ r37035 | paola | 2016-11-17 01:55:14 -0800 (Thu, 17 Nov 2016) | 2 lines GH MP: GO:0007288 - sperm axoneme assembly #12790 - closed - added sperm axoneme assembly part_of flagellated sperm motility changes in entailments ------------------------------------------------------------------------ r37035 | paola | 2016-11-17 01:55:14 -0800 (Thu, 17 Nov 2016) | 2 lines GH MP: GO:0007288 - sperm axoneme assembly #12790 - closed - added sperm axoneme assembly part_of flagellated sperm motility changes in entailments ------------------------------------------------------------------------ r37033 | paola | 2016-11-17 00:18:13 -0800 (Thu, 17 Nov 2016) | 2 lines Stemming from GH NTR/OTR: multiciliation-related classes #12672 - work in progress - added 'parthenogenesis' as related synonym of 'asexual reproduction' changes in entailments ------------------------------------------------------------------------ r37030 | termgenie | 2016-11-16 10:58:27 -0800 (Wed, 16 Nov 2016) | 4 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37030) +++ go_inferences.obo (working copy) @@ -90928,6 +90928,20 @@ is_a: GO:2001025 {is_inferred="true"} ! positive regulation of response to drug [Term] +id: GO:1905702 ! regulation of inhibitory synapse assembly +is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly + +[Term] +id: GO:1905703 ! negative regulation of inhibitory synapse assembly +is_a: GO:0051964 {is_inferred="true"} ! negative regulation of synapse assembly +is_a: GO:1905702 {is_inferred="true"} ! regulation of inhibitory synapse assembly + +[Term] +id: GO:1905704 ! positive regulation of inhibitory synapse assembly +is_a: GO:0051965 {is_inferred="true"} ! positive regulation of synapse assembly +is_a: GO:1905702 {is_inferred="true"} ! regulation of inhibitory synapse assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37023 | termgenie | 2016-11-15 08:59:45 -0800 (Tue, 15 Nov 2016) | 4 lines TermGenie commit for user: sl reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37023) +++ go_inferences.obo (working copy) @@ -90897,6 +90897,37 @@ is_a: GO:1905693 {is_inferred="true"} ! regulation of phosphatidic acid biosynthetic process [Term] +id: GO:1905696 ! regulation of polysome binding +is_a: GO:0051098 {is_inferred="true"} ! regulation of binding + +[Term] +id: GO:1905697 ! negative regulation of polysome binding +is_a: GO:0051100 {is_inferred="true"} ! negative regulation of binding +is_a: GO:1905696 {is_inferred="true"} ! regulation of polysome binding + +[Term] +id: GO:1905698 ! positive regulation of polysome binding +is_a: GO:0051099 {is_inferred="true"} ! positive regulation of binding +is_a: GO:1905696 {is_inferred="true"} ! regulation of polysome binding + +[Term] +id: GO:1905699 ! regulation of drug transmembrane export +is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport +is_a: GO:2001023 {is_inferred="true"} ! regulation of response to drug + +[Term] +id: GO:1905700 ! negative regulation of drug transmembrane export +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:1905699 {is_inferred="true"} ! regulation of drug transmembrane export +is_a: GO:2001024 {is_inferred="true"} ! negative regulation of response to drug + +[Term] +id: GO:1905701 ! positive regulation of drug transmembrane export +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1905699 {is_inferred="true"} ! regulation of drug transmembrane export +is_a: GO:2001025 {is_inferred="true"} ! positive regulation of response to drug + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37016 | paola | 2016-11-15 01:27:56 -0800 (Tue, 15 Nov 2016) | 3 lines GH OTR: add has_part links between autophagy and organelle disassembly #12754 - closed - see ticket for details changes in entailments ------------------------------------------------------------------------ r37012 | termgenie | 2016-11-14 08:38:41 -0800 (Mon, 14 Nov 2016) | 4 lines TermGenie commit for user: bc reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37012) +++ go_inferences.obo (working copy) @@ -90880,6 +90880,23 @@ is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] +id: GO:1905693 ! regulation of phosphatidic acid biosynthetic process +is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process +is_a: GO:0051174 {is_inferred="true"} ! regulation of phosphorus metabolic process + +[Term] +id: GO:1905694 ! negative regulation of phosphatidic acid biosynthetic process +is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process +is_a: GO:0010563 {is_inferred="true"} ! negative regulation of phosphorus metabolic process +is_a: GO:1905693 {is_inferred="true"} ! regulation of phosphatidic acid biosynthetic process + +[Term] +id: GO:1905695 ! positive regulation of phosphatidic acid biosynthetic process +is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process +is_a: GO:0010562 {is_inferred="true"} ! positive regulation of phosphorus metabolic process +is_a: GO:1905693 {is_inferred="true"} ! regulation of phosphatidic acid biosynthetic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37010 | mcourtot | 2016-11-14 07:48:16 -0800 (Mon, 14 Nov 2016) | 1 line added DNA geometric change' as parent to 'DNA strand renaturation' as per https://github.com/geneontology/go-ontology/issues/12539 changes in entailments ------------------------------------------------------------------------ r37008 | termgenie | 2016-11-14 05:42:14 -0800 (Mon, 14 Nov 2016) | 4 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 37008) +++ go_inferences.obo (working copy) @@ -90865,6 +90865,21 @@ is_a: GO:1905687 {is_inferred="true"} ! regulation of diacylglycerol kinase activity [Term] +id: GO:1905690 ! nucleus disassembly +is_a: GO:0006997 {is_inferred="true"} ! nucleus organization +is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly + +[Term] +id: GO:1905691 ! lipid particle disassembly +is_a: GO:0034389 {is_inferred="true"} ! lipid particle organization +is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly + +[Term] +id: GO:1905692 ! endoplasmic reticulum disassembly +is_a: GO:0007029 {is_inferred="true"} ! endoplasmic reticulum organization +is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r37001 | paola | 2016-11-14 05:33:01 -0800 (Mon, 14 Nov 2016) | 2 lines GH OTR: add has_part links between autophagy and organelle disassembly #12754 - work in progress - pexophagy terms changes in entailments ------------------------------------------------------------------------ r36999 | termgenie | 2016-11-14 04:59:59 -0800 (Mon, 14 Nov 2016) | 4 lines TermGenie commit for user: bc reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36999) +++ go_inferences.obo (working copy) @@ -90834,6 +90834,37 @@ is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly [Term] +id: GO:1905684 ! regulation of plasma membrane repair +is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing +is_a: GO:1903729 {is_inferred="true"} ! regulation of plasma membrane organization + +[Term] +id: GO:1905685 ! negative regulation of plasma membrane repair +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:0061045 {is_inferred="true"} ! negative regulation of wound healing +is_a: GO:1905684 {is_inferred="true"} ! regulation of plasma membrane repair + +[Term] +id: GO:1905686 ! positive regulation of plasma membrane repair +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:0090303 {is_inferred="true"} ! positive regulation of wound healing +is_a: GO:1905684 {is_inferred="true"} ! regulation of plasma membrane repair + +[Term] +id: GO:1905687 ! regulation of diacylglycerol kinase activity +is_a: GO:0043549 {is_inferred="true"} ! regulation of kinase activity + +[Term] +id: GO:1905688 ! negative regulation of diacylglycerol kinase activity +is_a: GO:0033673 {is_inferred="true"} ! negative regulation of kinase activity +is_a: GO:1905687 {is_inferred="true"} ! regulation of diacylglycerol kinase activity + +[Term] +id: GO:1905689 ! positive regulation of diacylglycerol kinase activity +is_a: GO:0033674 {is_inferred="true"} ! positive regulation of kinase activity +is_a: GO:1905687 {is_inferred="true"} ! regulation of diacylglycerol kinase activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36996 | termgenie | 2016-11-14 02:13:17 -0800 (Mon, 14 Nov 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36996) +++ go_inferences.obo (working copy) @@ -90829,6 +90829,11 @@ is_a: GO:1905680 {is_inferred="true"} ! regulation of innate immunity memory response [Term] +id: GO:1905683 ! peroxisome disassembly +is_a: GO:0007031 {is_inferred="true"} ! peroxisome organization +is_a: GO:1903008 {is_inferred="true"} ! organelle disassembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36991 | dph | 2016-11-13 10:56:53 -0800 (Sun, 13 Nov 2016) | 2 lines Made macroautophagy an autophagy that starts with autphagosome assembly and made autophagosome assembly start with ATG1/ULK1 kinase complex assembly. changes in entailments ------------------------------------------------------------------------ r36978 | dph | 2016-11-12 05:33:10 -0800 (Sat, 12 Nov 2016) | 2 lines Removed the has input relationships from the autophagosome assembly terms. changes in entailments ------------------------------------------------------------------------ r36957 | tberardi | 2016-11-11 18:03:21 -0800 (Fri, 11 Nov 2016) | 3 lines GH12610 NTR component term: heteroreceptor complex - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36957) +++ go_inferences.obo (working copy) @@ -8271,7 +8271,7 @@ [Term] id: GO:0007072 ! positive regulation of transcription involved in exit from mitosis -is_a: GO:0045897 {is_inferred="true"} ! positive regulation of transcription during mitosis +is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] @@ -38704,15 +38704,6 @@ is_a: GO:1903508 {is_inferred="true"} ! positive regulation of nucleic acid-templated transcription [Term] -id: GO:0045896 ! regulation of transcription during mitosis -is_a: GO:0006355 {is_inferred="true"} ! regulation of transcription, DNA-templated - -[Term] -id: GO:0045897 ! positive regulation of transcription during mitosis -is_a: GO:0045893 {is_inferred="true"} ! positive regulation of transcription, DNA-templated -is_a: GO:0045896 {is_inferred="true"} ! regulation of transcription during mitosis - -[Term] id: GO:0045898 ! regulation of RNA polymerase II transcriptional preinitiation complex assembly is_a: GO:0060260 {is_inferred="true"} ! regulation of transcription initiation from RNA polymerase II promoter @@ -39230,39 +39221,6 @@ is_a: GO:0046013 {is_inferred="true"} ! regulation of T cell homeostatic proliferation [Term] -id: GO:0046017 ! regulation of transcription from RNA polymerase I promoter, mitotic -is_a: GO:0006356 {is_inferred="true"} ! regulation of transcription from RNA polymerase I promoter -is_a: GO:0045896 {is_inferred="true"} ! regulation of transcription during mitosis - -[Term] -id: GO:0046018 ! positive regulation of transcription from RNA polymerase I promoter during mitosis -is_a: GO:0045897 {is_inferred="true"} ! positive regulation of transcription during mitosis -is_a: GO:0045943 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase I promoter -is_a: GO:0046017 {is_inferred="true"} ! regulation of transcription from RNA polymerase I promoter, mitotic - -[Term] -id: GO:0046021 ! regulation of transcription from RNA polymerase II promoter, mitotic -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter -is_a: GO:0045896 {is_inferred="true"} ! regulation of transcription during mitosis - -[Term] -id: GO:0046022 ! positive regulation of transcription from RNA polymerase II promoter during mitosis -is_a: GO:0045897 {is_inferred="true"} ! positive regulation of transcription during mitosis -is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0046021 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter, mitotic - -[Term] -id: GO:0046023 ! regulation of transcription from RNA polymerase III promoter, mitotic -is_a: GO:0006359 {is_inferred="true"} ! regulation of transcription from RNA polymerase III promoter -is_a: GO:0045896 {is_inferred="true"} ! regulation of transcription during mitosis - -[Term] -id: GO:0046024 ! positive regulation of transcription from RNA polymerase III promoter during mitosis -is_a: GO:0045897 {is_inferred="true"} ! positive regulation of transcription during mitosis -is_a: GO:0045945 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase III promoter -is_a: GO:0046023 {is_inferred="true"} ! regulation of transcription from RNA polymerase III promoter, mitotic - -[Term] id: GO:0046031 ! ADP metabolic process is_a: GO:0009150 {is_inferred="true"} ! purine ribonucleotide metabolic process is_a: GO:0009167 {is_inferred="true"} ! purine ribonucleoside monophosphate metabolic process ------------------------------------------------------------------------ r36954 | termgenie | 2016-11-11 14:30:00 -0800 (Fri, 11 Nov 2016) | 10 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36954) +++ go_inferences.obo (working copy) @@ -90807,6 +90807,70 @@ is_a: GO:1905666 {is_inferred="true"} ! regulation of protein localization to endosome [Term] +id: GO:1905669 ! TORC1 complex assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] +id: GO:1905670 ! TORC2 complex disassembly +is_a: GO:0043241 {is_inferred="true"} ! protein complex disassembly + +[Term] +id: GO:1905671 ! regulation of lysosome organization +is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization + +[Term] +id: GO:1905672 ! negative regulation of lysosome organization +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:1905671 {is_inferred="true"} ! regulation of lysosome organization + +[Term] +id: GO:1905673 ! positive regulation of lysosome organization +is_a: GO:0044090 {is_inferred="true"} ! positive regulation of vacuole organization +is_a: GO:1905671 {is_inferred="true"} ! regulation of lysosome organization + +[Term] +id: GO:1905674 ! regulation of adaptive immune memory response +is_a: GO:0002819 {is_inferred="true"} ! regulation of adaptive immune response + +[Term] +id: GO:1905675 ! negative regulation of adaptive immune memory response +is_a: GO:0002820 {is_inferred="true"} ! negative regulation of adaptive immune response +is_a: GO:1905674 {is_inferred="true"} ! regulation of adaptive immune memory response + +[Term] +id: GO:1905676 ! positive regulation of adaptive immune memory response +is_a: GO:0002821 {is_inferred="true"} ! positive regulation of adaptive immune response +is_a: GO:1905674 {is_inferred="true"} ! regulation of adaptive immune memory response + +[Term] +id: GO:1905677 ! regulation of adaptive immune effector response +is_a: GO:0002819 {is_inferred="true"} ! regulation of adaptive immune response + +[Term] +id: GO:1905678 ! negative regulation of adaptive immune effector response +is_a: GO:0002820 {is_inferred="true"} ! negative regulation of adaptive immune response +is_a: GO:1905677 {is_inferred="true"} ! regulation of adaptive immune effector response + +[Term] +id: GO:1905679 ! positive regulation of adaptive immune effector response +is_a: GO:0002821 {is_inferred="true"} ! positive regulation of adaptive immune response +is_a: GO:1905677 {is_inferred="true"} ! regulation of adaptive immune effector response + +[Term] +id: GO:1905680 ! regulation of innate immunity memory response +is_a: GO:0045088 {is_inferred="true"} ! regulation of innate immune response + +[Term] +id: GO:1905681 ! negative regulation of innate immunity memory response +is_a: GO:0045824 {is_inferred="true"} ! negative regulation of innate immune response +is_a: GO:1905680 {is_inferred="true"} ! regulation of innate immunity memory response + +[Term] +id: GO:1905682 ! positive regulation of innate immunity memory response +is_a: GO:0045089 {is_inferred="true"} ! positive regulation of innate immune response +is_a: GO:1905680 {is_inferred="true"} ! regulation of innate immunity memory response + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36950 | tberardi | 2016-11-11 12:49:23 -0800 (Fri, 11 Nov 2016) | 1 line GH12671 adaptive immune response - added third set of new terms changes in entailments ------------------------------------------------------------------------ r36948 | tberardi | 2016-11-11 12:42:57 -0800 (Fri, 11 Nov 2016) | 1 line GH12671 adaptive immune response - added second set of new terms changes in entailments ------------------------------------------------------------------------ r36946 | tberardi | 2016-11-11 12:31:39 -0800 (Fri, 11 Nov 2016) | 1 line GH12671 adaptive immune response - added new terms related to memory changes in entailments ------------------------------------------------------------------------ r36944 | tberardi | 2016-11-11 12:19:21 -0800 (Fri, 11 Nov 2016) | 1 line GH12671 adaptive immune response - modified definitions changes in entailments ------------------------------------------------------------------------ r36940 | dph | 2016-11-11 11:01:00 -0800 (Fri, 11 Nov 2016) | 2 lines GH12792-closed changes in entailments ------------------------------------------------------------------------ r36938 | dph | 2016-11-11 10:47:18 -0800 (Fri, 11 Nov 2016) | 2 lines GH12784-closed changes in entailments ------------------------------------------------------------------------ r36932 | mcourtot | 2016-11-11 05:22:36 -0800 (Fri, 11 Nov 2016) | 1 line added tRNA-guanine transglycosylation and taxon restriction on GO:0008616 queuosine biosynthetic process as per https://github.com/geneontology/go-ontology/issues/12536 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36932) +++ go_inferences.obo (working copy) @@ -77662,12 +77662,12 @@ [Term] id: GO:1902965 ! regulation of protein localization to early endosome -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1905666 {is_inferred="true"} ! regulation of protein localization to endosome [Term] id: GO:1902966 ! positive regulation of protein localization to early endosome is_a: GO:1902965 {is_inferred="true"} ! regulation of protein localization to early endosome -is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905668 {is_inferred="true"} ! positive regulation of protein localization to endosome [Term] id: GO:1902967 ! protein localization to mitotic spindle midzone @@ -90780,6 +90780,33 @@ is_a: GO:1905661 {is_inferred="true"} ! regulation of telomerase RNA reverse transcriptase activity [Term] +id: GO:1905664 ! regulation of calcium ion import across plasma membrane +is_a: GO:0010522 {is_inferred="true"} ! regulation of calcium ion transport into cytosol +is_a: GO:0090279 {is_inferred="true"} ! regulation of calcium ion import +is_a: GO:1903169 {is_inferred="true"} ! regulation of calcium ion transmembrane transport + +[Term] +id: GO:1905665 ! positive regulation of calcium ion import across plasma membrane +is_a: GO:0010524 {is_inferred="true"} ! positive regulation of calcium ion transport into cytosol +is_a: GO:0090280 {is_inferred="true"} ! positive regulation of calcium ion import +is_a: GO:1904427 {is_inferred="true"} ! positive regulation of calcium ion transmembrane transport +is_a: GO:1905664 {is_inferred="true"} ! regulation of calcium ion import across plasma membrane + +[Term] +id: GO:1905666 ! regulation of protein localization to endosome +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] +id: GO:1905667 ! negative regulation of protein localization to endosome +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization +is_a: GO:1905666 {is_inferred="true"} ! regulation of protein localization to endosome + +[Term] +id: GO:1905668 ! positive regulation of protein localization to endosome +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905666 {is_inferred="true"} ! regulation of protein localization to endosome + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36927 | dph | 2016-11-11 04:57:37 -0800 (Fri, 11 Nov 2016) | 2 lines Trying to remove logical error of multiply labeled edge on GO:0061804. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36927) +++ go_inferences.obo (working copy) @@ -51189,7 +51189,8 @@ [Term] id: GO:0061804 ! mitotic spindle elongation during mitotic prophase -is_a: GO:0000022 {is_inferred="true"} ! mitotic spindle elongation +is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization +is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis [Term] id: GO:0061805 ! mitotic spindle elongation during mitotic anaphase ------------------------------------------------------------------------ r36924 | dph | 2016-11-10 12:30:49 -0800 (Thu, 10 Nov 2016) | 2 lines GH12791-closed. changes in entailments ------------------------------------------------------------------------ r36916 | termgenie | 2016-11-10 06:09:52 -0800 (Thu, 10 Nov 2016) | 4 lines TermGenie commit for user: rph reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36916) +++ go_inferences.obo (working copy) @@ -81904,18 +81904,17 @@ [Term] id: GO:1903847 ! regulation of aorta morphogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development +is_a: GO:1905651 {is_inferred="true"} ! regulation of artery morphogenesis [Term] id: GO:1903848 ! negative regulation of aorta morphogenesis is_a: GO:1903847 {is_inferred="true"} ! regulation of aorta morphogenesis -is_a: GO:2000181 {is_inferred="true"} ! negative regulation of blood vessel morphogenesis +is_a: GO:1905652 {is_inferred="true"} ! negative regulation of artery morphogenesis [Term] id: GO:1903849 ! positive regulation of aorta morphogenesis is_a: GO:1903847 {is_inferred="true"} ! regulation of aorta morphogenesis -is_a: GO:1904018 {is_inferred="true"} ! positive regulation of vasculature development +is_a: GO:1905653 {is_inferred="true"} ! positive regulation of artery morphogenesis [Term] id: GO:1903850 ! regulation of cristae formation @@ -84314,18 +84313,17 @@ [Term] id: GO:1904335 ! regulation of ductus arteriosus closure -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis -is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development +is_a: GO:1905651 {is_inferred="true"} ! regulation of artery morphogenesis [Term] id: GO:1904336 ! negative regulation of ductus arteriosus closure is_a: GO:1904335 {is_inferred="true"} ! regulation of ductus arteriosus closure -is_a: GO:2000181 {is_inferred="true"} ! negative regulation of blood vessel morphogenesis +is_a: GO:1905652 {is_inferred="true"} ! negative regulation of artery morphogenesis [Term] id: GO:1904337 ! positive regulation of ductus arteriosus closure -is_a: GO:1904018 {is_inferred="true"} ! positive regulation of vasculature development is_a: GO:1904335 {is_inferred="true"} ! regulation of ductus arteriosus closure +is_a: GO:1905653 {is_inferred="true"} ! positive regulation of artery morphogenesis [Term] id: GO:1904338 ! regulation of dopaminergic neuron differentiation @@ -90715,6 +90713,21 @@ is_a: GO:1905648 {is_inferred="true"} ! regulation of shell calcification [Term] +id: GO:1905651 ! regulation of artery morphogenesis +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:1901342 {is_inferred="true"} ! regulation of vasculature development + +[Term] +id: GO:1905652 ! negative regulation of artery morphogenesis +is_a: GO:1905651 {is_inferred="true"} ! regulation of artery morphogenesis +is_a: GO:2000181 {is_inferred="true"} ! negative regulation of blood vessel morphogenesis + +[Term] +id: GO:1905653 ! positive regulation of artery morphogenesis +is_a: GO:1904018 {is_inferred="true"} ! positive regulation of vasculature development +is_a: GO:1905651 {is_inferred="true"} ! regulation of artery morphogenesis + +[Term] id: GO:1905654 ! regulation of artery smooth muscle contraction is_a: GO:0003056 {is_inferred="true"} ! regulation of vascular smooth muscle contraction ------------------------------------------------------------------------ r36914 | termgenie | 2016-11-10 05:39:28 -0800 (Thu, 10 Nov 2016) | 4 lines TermGenie commit for user: nc reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36914) +++ go_inferences.obo (working copy) @@ -83969,10 +83969,9 @@ [Term] id: GO:1904271 ! L-proline import across plasma membrane -is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane -is_a: GO:1902825 {is_inferred="true"} ! proline import into cell is_a: GO:1903809 {is_inferred="true"} ! L-proline import into cell is_a: GO:1904555 {is_inferred="true"} ! L-proline transmembrane transport +is_a: GO:1905647 {is_inferred="true"} ! proline import across plasma membrane [Term] id: GO:1904272 ! L-tryptophan import across plasma membrane @@ -90682,6 +90681,91 @@ is_a: GO:0051054 {is_inferred="true"} ! positive regulation of DNA metabolic process [Term] +id: GO:1905644 ! regulation of FACT complex assembly +is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly + +[Term] +id: GO:1905645 ! negative regulation of FACT complex assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:1905644 {is_inferred="true"} ! regulation of FACT complex assembly + +[Term] +id: GO:1905646 ! positive regulation of FACT complex assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:1905644 {is_inferred="true"} ! regulation of FACT complex assembly + +[Term] +id: GO:1905647 ! proline import across plasma membrane +is_a: GO:0035524 {is_inferred="true"} ! proline transmembrane transport +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1902825 {is_inferred="true"} ! proline import into cell + +[Term] +id: GO:1905648 ! regulation of shell calcification +is_a: GO:0070167 {is_inferred="true"} ! regulation of biomineral tissue development + +[Term] +id: GO:1905649 ! negative regulation of shell calcification +is_a: GO:0070168 {is_inferred="true"} ! negative regulation of biomineral tissue development +is_a: GO:1905648 {is_inferred="true"} ! regulation of shell calcification + +[Term] +id: GO:1905650 ! positive regulation of shell calcification +is_a: GO:0070169 {is_inferred="true"} ! positive regulation of biomineral tissue development +is_a: GO:1905648 {is_inferred="true"} ! regulation of shell calcification + +[Term] +id: GO:1905654 ! regulation of artery smooth muscle contraction +is_a: GO:0003056 {is_inferred="true"} ! regulation of vascular smooth muscle contraction + +[Term] +id: GO:1905655 ! negative regulation of artery smooth muscle contraction +is_a: GO:1904694 {is_inferred="true"} ! negative regulation of vascular smooth muscle contraction +is_a: GO:1905654 {is_inferred="true"} ! regulation of artery smooth muscle contraction + +[Term] +id: GO:1905656 ! positive regulation of artery smooth muscle contraction +is_a: GO:1904695 {is_inferred="true"} ! positive regulation of vascular smooth muscle contraction +is_a: GO:1905654 {is_inferred="true"} ! regulation of artery smooth muscle contraction + +[Term] +id: GO:1905657 ! regulation of relaxation of vascular smooth muscle +is_a: GO:0006940 {is_inferred="true"} ! regulation of smooth muscle contraction +is_a: GO:0042312 {is_inferred="true"} ! regulation of vasodilation +is_a: GO:1901080 {is_inferred="true"} ! regulation of relaxation of smooth muscle + +[Term] +id: GO:1905658 ! negative regulation of relaxation of vascular smooth muscle +is_a: GO:0045908 {is_inferred="true"} ! negative regulation of vasodilation +is_a: GO:0045987 {is_inferred="true"} ! positive regulation of smooth muscle contraction +is_a: GO:1901081 {is_inferred="true"} ! negative regulation of relaxation of smooth muscle +is_a: GO:1905657 {is_inferred="true"} ! regulation of relaxation of vascular smooth muscle + +[Term] +id: GO:1905659 ! positive regulation of relaxation of vascular smooth muscle +is_a: GO:0045909 {is_inferred="true"} ! positive regulation of vasodilation +is_a: GO:1901082 {is_inferred="true"} ! positive regulation of relaxation of smooth muscle +is_a: GO:1905657 {is_inferred="true"} ! regulation of relaxation of vascular smooth muscle + +[Term] +id: GO:1905660 ! mitotic checkpoint complex assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] +id: GO:1905661 ! regulation of telomerase RNA reverse transcriptase activity +is_a: GO:0051972 {is_inferred="true"} ! regulation of telomerase activity + +[Term] +id: GO:1905662 ! negative regulation of telomerase RNA reverse transcriptase activity +is_a: GO:0051974 {is_inferred="true"} ! negative regulation of telomerase activity +is_a: GO:1905661 {is_inferred="true"} ! regulation of telomerase RNA reverse transcriptase activity + +[Term] +id: GO:1905663 ! positive regulation of telomerase RNA reverse transcriptase activity +is_a: GO:0051973 {is_inferred="true"} ! positive regulation of telomerase activity +is_a: GO:1905661 {is_inferred="true"} ! regulation of telomerase RNA reverse transcriptase activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36904 | mcourtot | 2016-11-09 08:20:11 -0800 (Wed, 09 Nov 2016) | 1 line removed offending consider tag changes in entailments ------------------------------------------------------------------------ r36901 | mcourtot | 2016-11-09 07:57:05 -0800 (Wed, 09 Nov 2016) | 1 line deprecated GO:0050983 deoxyhypusine biosynthetic process from spermidine as per https://github.com/geneontology/go-ontology/issues/12723 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36901) +++ go_inferences.obo (working copy) @@ -44586,13 +44586,6 @@ is_a: GO:0050962 {is_inferred="true"} ! detection of light stimulus involved in sensory perception [Term] -id: GO:0050983 ! deoxyhypusine biosynthetic process from spermidine -is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process -is_a: GO:0042398 {is_inferred="true"} ! cellular modified amino acid biosynthetic process -is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process -is_a: GO:1901607 {is_inferred="true"} ! alpha-amino acid biosynthetic process - -[Term] id: GO:0050992 ! dimethylallyl diphosphate biosynthetic process is_a: GO:0008654 {is_inferred="true"} ! phospholipid biosynthetic process is_a: GO:0050993 {is_inferred="true"} ! dimethylallyl diphosphate metabolic process ------------------------------------------------------------------------ r36898 | paola | 2016-11-09 03:54:16 -0800 (Wed, 09 Nov 2016) | 2 lines GH Cellular component assembly/disassembly - add missing logical definitions #12232 - work in progress - renamed and redefined ‘NMS complex assembly involved in kinetochore assembly’ regulation terms, and added link to 'NMS complex' changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36899) +++ go_inferences.obo (working copy) @@ -71546,13 +71546,13 @@ is_a: GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport [Term] -id: GO:1901720 ! negative regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly involved in kinetochore assembly +id: GO:1901720 ! negative regulation of NMS complex assembly +is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly is_a: GO:1905560 {is_inferred="true"} ! negative regulation of kinetochore assembly [Term] -id: GO:1901721 ! positive regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly involved in kinetochore assembly +id: GO:1901721 ! positive regulation of NMS complex assembly +is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly is_a: GO:1905561 {is_inferred="true"} ! positive regulation of kinetochore assembly [Term] ------------------------------------------------------------------------ r36897 | paola | 2016-11-09 03:46:18 -0800 (Wed, 09 Nov 2016) | 2 lines GH Cellular component assembly/disassembly - add missing logical definitions #12232 - work in progress - renamed and redefined ‘NMS complex assembly involved in kinetochore assembly’ changes in entailments ------------------------------------------------------------------------ r36892 | paola | 2016-11-09 02:27:37 -0800 (Wed, 09 Nov 2016) | 3 lines GH GO:0043936 asexual sporulation resulting in the formation of a cellular spore #12744 - closed - added synonym to 'asexual sporulation' changes in entailments ------------------------------------------------------------------------ r36885 | paola | 2016-11-08 01:57:28 -0800 (Tue, 08 Nov 2016) | 3 lines GH NTR: tRNA 5'-end processing / children of RNA repair? / 3′-5′ RNA polymerase activity #12756 - work in progress - added GO:0097745 mitochondrial tRNA 5'-end processing changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36885) +++ go_inferences.obo (working copy) @@ -60351,6 +60351,10 @@ is_a: GO:0044441 {is_inferred="true"} ! ciliary part [Term] +id: GO:0097745 ! mitochondrial tRNA 5'-end processing +is_a: GO:0034471 {is_inferred="true"} ! ncRNA 5'-end processing + +[Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly ------------------------------------------------------------------------ r36883 | paola | 2016-11-08 00:52:15 -0800 (Tue, 08 Nov 2016) | 3 lines GH OTR: GO:0045005 (DNA-dependent DNA replication maintenance of fidelity) #12749 - closed - added def. gloss to ‘replication fork arrest’ changes in entailments ------------------------------------------------------------------------ r36878 | dph | 2016-11-07 08:24:07 -0800 (Mon, 07 Nov 2016) | 2 lines Added relation to deactivation of mitotic spindle assembly checkpoint. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36878) +++ go_inferences.obo (working copy) @@ -75103,6 +75103,14 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] +id: GO:1902426 ! deactivation of mitotic spindle assembly checkpoint +is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0045842 {is_inferred="true"} ! positive regulation of mitotic metaphase/anaphase transition +is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle +is_a: GO:0090233 {is_inferred="true"} ! negative regulation of spindle checkpoint +is_a: GO:0090266 {is_inferred="true"} ! regulation of mitotic cell cycle spindle assembly checkpoint + +[Term] id: GO:1902427 ! regulation of water channel activity is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity ------------------------------------------------------------------------ r36871 | dph | 2016-11-06 20:30:53 -0800 (Sun, 06 Nov 2016) | 2 lines GH12642-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36871) +++ go_inferences.obo (working copy) @@ -16877,10 +16877,6 @@ is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy [Term] -id: GO:0016240 ! autophagosome docking -is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization - -[Term] id: GO:0016241 ! regulation of macroautophagy is_a: GO:0010506 {is_inferred="true"} ! regulation of autophagy ------------------------------------------------------------------------ r36869 | dph | 2016-11-06 20:19:21 -0800 (Sun, 06 Nov 2016) | 2 lines GH12431-closed. Made changes that weren't saved in earlier edits. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36869) +++ go_inferences.obo (working copy) @@ -425,6 +425,8 @@ [Term] id: GO:0000212 ! meiotic spindle organization +is_a: GO:0007051 {is_inferred="true"} ! spindle organization +is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -8227,6 +8229,7 @@ [Term] id: GO:0007052 ! mitotic spindle organization +is_a: GO:0007051 {is_inferred="true"} ! spindle organization is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] @@ -45263,14 +45266,13 @@ [Term] id: GO:0051228 ! mitotic spindle disassembly +is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:0051230 {is_inferred="true"} ! spindle disassembly -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:0051229 ! meiotic spindle disassembly -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0000212 {is_inferred="true"} ! meiotic spindle organization is_a: GO:0051230 {is_inferred="true"} ! spindle disassembly -is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] id: GO:0051230 ! spindle disassembly @@ -48008,7 +48010,7 @@ [Term] id: GO:0060236 ! regulation of mitotic spindle organization is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle -is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process +is_a: GO:0090224 {is_inferred="true"} ! regulation of spindle organization [Term] id: GO:0060237 ! regulation of fungal-type cell wall organization @@ -51197,6 +51199,15 @@ is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity [Term] +id: GO:0061804 ! mitotic spindle elongation during mitotic prophase +is_a: GO:0000022 {is_inferred="true"} ! mitotic spindle elongation + +[Term] +id: GO:0061805 ! mitotic spindle elongation during mitotic anaphase +is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization +is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -59044,12 +59055,12 @@ [Term] id: GO:0090306 ! spindle assembly involved in meiosis -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0000212 {is_inferred="true"} ! meiotic spindle organization is_a: GO:0051225 {is_inferred="true"} ! spindle assembly -is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] id: GO:0090307 ! mitotic spindle assembly +is_a: GO:0007052 {is_inferred="true"} ! mitotic spindle organization is_a: GO:0051225 {is_inferred="true"} ! spindle assembly is_a: GO:1902850 {is_inferred="true"} ! microtubule cytoskeleton organization involved in mitosis @@ -71313,6 +71324,7 @@ [Term] id: GO:1901673 ! regulation of mitotic spindle assembly is_a: GO:0007088 {is_inferred="true"} ! regulation of mitotic nuclear division +is_a: GO:0060236 {is_inferred="true"} ! regulation of mitotic spindle organization is_a: GO:0090169 {is_inferred="true"} ! regulation of spindle assembly [Term] @@ -86021,8 +86033,7 @@ [Term] id: GO:1904686 ! regulation of mitotic spindle disassembly -is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle -is_a: GO:0090224 {is_inferred="true"} ! regulation of spindle organization +is_a: GO:0060236 {is_inferred="true"} ! regulation of mitotic spindle organization [Term] id: GO:1904687 ! positive regulation of mitotic spindle disassembly ------------------------------------------------------------------------ r36867 | dph | 2016-11-06 19:58:37 -0800 (Sun, 06 Nov 2016) | 2 lines GH12781-closed changes in entailments ------------------------------------------------------------------------ r36861 | dph | 2016-11-06 16:07:27 -0800 (Sun, 06 Nov 2016) | 2 lines GH12366-closed. Fixed up the cell cycle checkpoints. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36861) +++ go_inferences.obo (working copy) @@ -56115,12 +56115,10 @@ [Term] id: GO:0072421 ! detection of DNA damage stimulus involved in DNA damage checkpoint -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process is_a: GO:0042769 {is_inferred="true"} ! DNA damage response, detection of DNA damage [Term] id: GO:0072422 ! signal transduction involved in DNA damage checkpoint -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process is_a: GO:0072401 {is_inferred="true"} ! signal transduction involved in DNA integrity checkpoint [Term] @@ -56164,10 +56162,6 @@ is_a: GO:1902402 {is_inferred="true"} ! signal transduction involved in mitotic DNA damage checkpoint [Term] -id: GO:0072436 ! detection of stimulus involved in DNA replication checkpoint -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process - -[Term] id: GO:0072437 ! signal transduction involved in DNA replication checkpoint is_a: GO:0072401 {is_inferred="true"} ! signal transduction involved in DNA integrity checkpoint @@ -58889,6 +58883,7 @@ [Term] id: GO:0090267 ! positive regulation of mitotic cell cycle spindle assembly checkpoint is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process is_a: GO:0090232 {is_inferred="true"} ! positive regulation of spindle checkpoint is_a: GO:0090266 {is_inferred="true"} ! regulation of mitotic cell cycle spindle assembly checkpoint @@ -72892,16 +72887,17 @@ [Term] id: GO:1901976 ! regulation of cell cycle checkpoint -is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process +is_a: GO:0051726 {is_inferred="true"} ! regulation of cell cycle [Term] id: GO:1901977 ! negative regulation of cell cycle checkpoint -is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0045787 {is_inferred="true"} ! positive regulation of cell cycle +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint [Term] id: GO:1901978 ! positive regulation of cell cycle checkpoint -is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint [Term] @@ -75099,13 +75095,6 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] -id: GO:1902426 ! deactivation of mitotic spindle assembly checkpoint -is_a: GO:0045842 {is_inferred="true"} ! positive regulation of mitotic metaphase/anaphase transition -is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle -is_a: GO:0090233 {is_inferred="true"} ! negative regulation of spindle checkpoint -is_a: GO:0090266 {is_inferred="true"} ! regulation of mitotic cell cycle spindle assembly checkpoint - -[Term] id: GO:1902427 ! regulation of water channel activity is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity @@ -84055,10 +84044,12 @@ [Term] id: GO:1904289 ! regulation of mitotic DNA damage checkpoint is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle +is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process is_a: GO:2000001 {is_inferred="true"} ! regulation of DNA damage checkpoint [Term] id: GO:1904290 ! negative regulation of mitotic DNA damage checkpoint +is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle is_a: GO:1904289 {is_inferred="true"} ! regulation of mitotic DNA damage checkpoint @@ -84067,6 +84058,7 @@ [Term] id: GO:1904291 ! positive regulation of mitotic DNA damage checkpoint is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process is_a: GO:1904289 {is_inferred="true"} ! regulation of mitotic DNA damage checkpoint is_a: GO:2000003 {is_inferred="true"} ! positive regulation of DNA damage checkpoint @@ -89915,7 +89907,6 @@ [Term] id: GO:1905482 ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein [Term] ------------------------------------------------------------------------ r36853 | termgenie | 2016-11-06 06:07:02 -0800 (Sun, 06 Nov 2016) | 3 lines TermGenie commit for user: bc reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36857) +++ go_inferences.obo (working copy) @@ -90633,6 +90633,10 @@ is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] +id: GO:1905635 ! FACT complex assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] id: GO:1905636 ! positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding is_a: GO:1903025 {is_inferred="true"} ! regulation of RNA polymerase II regulatory region sequence-specific DNA binding is_a: GO:2000679 {is_inferred="true"} ! positive regulation of transcription regulatory region DNA binding @@ -90655,6 +90659,26 @@ is_a: GO:1905637 {is_inferred="true"} ! regulation of mitochondrial mRNA catabolic process [Term] +id: GO:1905640 ! response to acetaldehyde +is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound + +[Term] +id: GO:1905641 ! cellular response to acetaldehyde +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:1905640 {is_inferred="true"} ! response to acetaldehyde + +[Term] +id: GO:1905642 ! negative regulation of DNA methylation +is_a: GO:0044030 {is_inferred="true"} ! regulation of DNA methylation +is_a: GO:0051053 {is_inferred="true"} ! negative regulation of DNA metabolic process + +[Term] +id: GO:1905643 ! positive regulation of DNA methylation +is_a: GO:0044030 {is_inferred="true"} ! regulation of DNA methylation +is_a: GO:0051054 {is_inferred="true"} ! positive regulation of DNA metabolic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36796 | termgenie | 2016-11-03 13:27:39 -0700 (Thu, 03 Nov 2016) | 4 lines TermGenie commit for user: tb reviewed by tb changes in entailments ------------------------------------------------------------------------ r36796 | termgenie | 2016-11-03 13:27:39 -0700 (Thu, 03 Nov 2016) | 4 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36796) +++ go_inferences.obo (working copy) @@ -90633,6 +90633,28 @@ is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] +id: GO:1905636 ! positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding +is_a: GO:1903025 {is_inferred="true"} ! regulation of RNA polymerase II regulatory region sequence-specific DNA binding +is_a: GO:2000679 {is_inferred="true"} ! positive regulation of transcription regulatory region DNA binding + +[Term] +id: GO:1905637 ! regulation of mitochondrial mRNA catabolic process +is_a: GO:0000960 {is_inferred="true"} ! regulation of mitochondrial RNA catabolic process +is_a: GO:0061013 {is_inferred="true"} ! regulation of mRNA catabolic process + +[Term] +id: GO:1905638 ! negative regulation of mitochondrial mRNA catabolic process +is_a: GO:0000961 {is_inferred="true"} ! negative regulation of mitochondrial RNA catabolic process +is_a: GO:1902373 {is_inferred="true"} ! negative regulation of mRNA catabolic process +is_a: GO:1905637 {is_inferred="true"} ! regulation of mitochondrial mRNA catabolic process + +[Term] +id: GO:1905639 ! positive regulation of mitochondrial mRNA catabolic process +is_a: GO:0000962 {is_inferred="true"} ! positive regulation of mitochondrial RNA catabolic process +is_a: GO:0061014 {is_inferred="true"} ! positive regulation of mRNA catabolic process +is_a: GO:1905637 {is_inferred="true"} ! regulation of mitochondrial mRNA catabolic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36793 | mcourtot | 2016-11-03 09:08:31 -0700 (Thu, 03 Nov 2016) | 1 line fixed extra spaces as per release message LINE: 505717 accepting bad xref with spaces: and LINE: 82735 accepting bad xref with spaces:GOC: BHF_telomere changes in entailments ------------------------------------------------------------------------ r36764 | termgenie | 2016-11-02 15:25:45 -0700 (Wed, 02 Nov 2016) | 4 lines TermGenie commit for user: als reviewed by tb changes in entailments ------------------------------------------------------------------------ r36764 | termgenie | 2016-11-02 15:25:45 -0700 (Wed, 02 Nov 2016) | 4 lines TermGenie commit for user: als reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36764) +++ go_inferences.obo (working copy) @@ -90473,6 +90473,21 @@ is_a: GO:1905600 {is_inferred="true"} ! regulation of receptor-mediated endocytosis involved in cholesterol transport [Term] +id: GO:1905603 ! regulation of maintenance of permeability of blood-brain barrier +is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0065008 {is_inferred="true"} ! regulation of biological quality + +[Term] +id: GO:1905604 ! negative regulation of maintenance of permeability of blood-brain barrier +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905603 {is_inferred="true"} ! regulation of maintenance of permeability of blood-brain barrier + +[Term] +id: GO:1905605 ! positive regulation of maintenance of permeability of blood-brain barrier +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905603 {is_inferred="true"} ! regulation of maintenance of permeability of blood-brain barrier + +[Term] id: GO:1905606 ! regulation of presynapse assembly is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly ------------------------------------------------------------------------ r36762 | tberardi | 2016-11-02 15:17:42 -0700 (Wed, 02 Nov 2016) | 1 line GH12767 maintenance of blood-brain barrier and regulation terms - in progress changes in entailments ------------------------------------------------------------------------ r36759 | dph | 2016-11-02 05:16:08 -0700 (Wed, 02 Nov 2016) | 2 lines GH7774-closed changes in entailments ------------------------------------------------------------------------ r36677 | tberardi | 2016-11-01 13:34:25 -0700 (Tue, 01 Nov 2016) | 1 line GH12610 NTR component term: heteroreceptor complex - in progress changes in entailments ------------------------------------------------------------------------ r36675 | tberardi | 2016-11-01 13:27:50 -0700 (Tue, 01 Nov 2016) | 1 line GH12761 erroneous links involving spindle pole body terms - in progress changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36675) +++ go_inferences.obo (working copy) @@ -75175,13 +75175,11 @@ [Term] id: GO:1902440 ! protein localization to mitotic spindle pole body -is_a: GO:1902480 {is_inferred="true"} ! protein localization to mitotic spindle is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:1902441 ! protein localization to meiotic spindle pole body is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:1905359 {is_inferred="true"} ! protein localization to meiotic spindle is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] ------------------------------------------------------------------------ r36673 | tberardi | 2016-11-01 13:11:32 -0700 (Tue, 01 Nov 2016) | 1 line GH12613 Term clarification: mycelium development changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36673) +++ go_inferences.obo (working copy) @@ -72612,18 +72612,16 @@ [Term] id: GO:1901922 ! regulation of sclerotium development -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:1901923 ! negative regulation of sclerotium development is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1901922 {is_inferred="true"} ! regulation of sclerotium development [Term] id: GO:1901924 ! positive regulation of sclerotium development is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1901922 {is_inferred="true"} ! regulation of sclerotium development [Term] ------------------------------------------------------------------------ r36671 | tberardi | 2016-11-01 12:59:53 -0700 (Tue, 01 Nov 2016) | 1 line GH12764 basal pole of outer hair cell - closed changes in entailments ------------------------------------------------------------------------ r36669 | termgenie | 2016-11-01 12:30:24 -0700 (Tue, 01 Nov 2016) | 2 lines TermGenie commit for user: pga reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36669) +++ go_inferences.obo (working copy) @@ -55270,7 +55270,7 @@ id: GO:0071922 ! regulation of cohesin loading is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion is_a: GO:0051101 {is_inferred="true"} ! regulation of DNA binding -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1905634 {is_inferred="true"} ! regulation of protein localization to chromatin [Term] id: GO:0071923 ! negative regulation of cohesin loading @@ -90601,6 +90601,27 @@ is_a: GO:1905627 {is_inferred="true"} ! regulation of serotonin biosynthetic process [Term] +id: GO:1905630 ! response to glyceraldehyde +is_a: GO:0034284 {is_inferred="true"} ! response to monosaccharide + +[Term] +id: GO:1905631 ! cellular response to glyceraldehyde +is_a: GO:0071326 {is_inferred="true"} ! cellular response to monosaccharide stimulus +is_a: GO:1905630 {is_inferred="true"} ! response to glyceraldehyde + +[Term] +id: GO:1905632 ! protein localization to euchromatin +is_a: GO:0071168 {is_inferred="true"} ! protein localization to chromatin + +[Term] +id: GO:1905633 ! establishment of protein localization to euchromatin +is_a: GO:0071169 {is_inferred="true"} ! establishment of protein localization to chromatin + +[Term] +id: GO:1905634 ! regulation of protein localization to chromatin +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36660 | hjd | 2016-10-31 13:50:37 -0700 (Mon, 31 Oct 2016) | 2 lines removed GO:0102638 duplicate name changes in entailments ------------------------------------------------------------------------ r36655 | termgenie | 2016-10-31 09:12:48 -0700 (Mon, 31 Oct 2016) | 4 lines TermGenie commit for user: pad reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36655) +++ go_inferences.obo (working copy) @@ -90567,6 +90567,40 @@ is_a: GO:2000024 {is_inferred="true"} ! regulation of leaf development [Term] +id: GO:1905624 ! regulation of L-methionine import across plasma membrane +is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport + +[Term] +id: GO:1905625 ! negative regulation of L-methionine import across plasma membrane +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1905624 {is_inferred="true"} ! regulation of L-methionine import across plasma membrane + +[Term] +id: GO:1905626 ! positive regulation of L-methionine import across plasma membrane +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1905624 {is_inferred="true"} ! regulation of L-methionine import across plasma membrane + +[Term] +id: GO:1905627 ! regulation of serotonin biosynthetic process +is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process +is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process + +[Term] +id: GO:1905628 ! negative regulation of serotonin biosynthetic process +is_a: GO:0031327 {is_inferred="true"} ! negative regulation of cellular biosynthetic process +is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:1905627 {is_inferred="true"} ! regulation of serotonin biosynthetic process + +[Term] +id: GO:1905629 ! positive regulation of serotonin biosynthetic process +is_a: GO:0031328 {is_inferred="true"} ! positive regulation of cellular biosynthetic process +is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:1905627 {is_inferred="true"} ! regulation of serotonin biosynthetic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36619 | termgenie | 2016-10-28 17:22:58 -0700 (Fri, 28 Oct 2016) | 2 lines TermGenie commit for user: sp reviewed by tb changes in entailments ------------------------------------------------------------------------ r36616 | termgenie | 2016-10-28 16:51:22 -0700 (Fri, 28 Oct 2016) | 3 lines TermGenie commit for user: pga reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36616) +++ go_inferences.obo (working copy) @@ -11399,6 +11399,7 @@ id: GO:0010083 ! regulation of vegetative meristem growth is_a: GO:0010075 {is_inferred="true"} ! regulation of meristem growth is_a: GO:0048831 {is_inferred="true"} ! regulation of shoot system development +is_a: GO:1905613 {is_inferred="true"} ! regulation of developmental vegetative growth [Term] id: GO:0010092 ! specification of animal organ identity @@ -58010,6 +58011,7 @@ [Term] id: GO:0090015 ! positive regulation of leaflet formation by auxin mediated signaling pathway is_a: GO:1905423 {is_inferred="true"} ! positive regulation of plant organ morphogenesis +is_a: GO:1905623 {is_inferred="true"} ! positive regulation of leaf development [Term] id: GO:0090016 ! regulation of leaflet formation @@ -62958,15 +62960,13 @@ [Term] id: GO:1900056 ! negative regulation of leaf senescence -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1900055 {is_inferred="true"} ! regulation of leaf senescence +is_a: GO:1905622 {is_inferred="true"} ! negative regulation of leaf development [Term] id: GO:1900057 ! positive regulation of leaf senescence -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1900055 {is_inferred="true"} ! regulation of leaf senescence +is_a: GO:1905623 {is_inferred="true"} ! positive regulation of leaf development [Term] id: GO:1900058 ! regulation of sulfate assimilation @@ -90079,17 +90079,17 @@ [Term] id: GO:1905518 ! regulation of presynaptic active zone assembly -is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly +is_a: GO:1905606 {is_inferred="true"} ! regulation of presynapse assembly [Term] id: GO:1905519 ! negative regulation of presynaptic active zone assembly -is_a: GO:0051964 {is_inferred="true"} ! negative regulation of synapse assembly is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly +is_a: GO:1905607 {is_inferred="true"} ! negative regulation of presynapse assembly [Term] id: GO:1905520 ! positive regulation of presynaptic active zone assembly -is_a: GO:0051965 {is_inferred="true"} ! positive regulation of synapse assembly is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly +is_a: GO:1905608 {is_inferred="true"} ! positive regulation of presynapse assembly [Term] id: GO:1905521 ! regulation of macrophage migration @@ -90477,6 +90477,96 @@ is_a: GO:1905600 {is_inferred="true"} ! regulation of receptor-mediated endocytosis involved in cholesterol transport [Term] +id: GO:1905606 ! regulation of presynapse assembly +is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly + +[Term] +id: GO:1905607 ! negative regulation of presynapse assembly +is_a: GO:0051964 {is_inferred="true"} ! negative regulation of synapse assembly +is_a: GO:1905606 {is_inferred="true"} ! regulation of presynapse assembly + +[Term] +id: GO:1905608 ! positive regulation of presynapse assembly +is_a: GO:0051965 {is_inferred="true"} ! positive regulation of synapse assembly +is_a: GO:1905606 {is_inferred="true"} ! regulation of presynapse assembly + +[Term] +id: GO:1905609 ! positive regulation of smooth muscle cell-matrix adhesion +is_a: GO:0001954 {is_inferred="true"} ! positive regulation of cell-matrix adhesion +is_a: GO:2000097 {is_inferred="true"} ! regulation of smooth muscle cell-matrix adhesion + +[Term] +id: GO:1905610 ! regulation of mRNA cap binding +is_a: GO:1905214 {is_inferred="true"} ! regulation of RNA binding + +[Term] +id: GO:1905611 ! negative regulation of mRNA cap binding +is_a: GO:1905215 {is_inferred="true"} ! negative regulation of RNA binding +is_a: GO:1905610 {is_inferred="true"} ! regulation of mRNA cap binding + +[Term] +id: GO:1905612 ! positive regulation of mRNA cap binding +is_a: GO:1905216 {is_inferred="true"} ! positive regulation of RNA binding +is_a: GO:1905610 {is_inferred="true"} ! regulation of mRNA cap binding + +[Term] +id: GO:1905613 ! regulation of developmental vegetative growth +is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth + +[Term] +id: GO:1905614 ! negative regulation of developmental vegetative growth +is_a: GO:0048640 {is_inferred="true"} ! negative regulation of developmental growth +is_a: GO:1905613 {is_inferred="true"} ! regulation of developmental vegetative growth + +[Term] +id: GO:1905615 ! positive regulation of developmental vegetative growth +is_a: GO:0048639 {is_inferred="true"} ! positive regulation of developmental growth +is_a: GO:1905613 {is_inferred="true"} ! regulation of developmental vegetative growth + +[Term] +id: GO:1905616 ! regulation of miRNA mediated inhibition of translation +is_a: GO:0060964 {is_inferred="true"} ! regulation of gene silencing by miRNA + +[Term] +id: GO:1905617 ! negative regulation of miRNA mediated inhibition of translation +is_a: GO:0060965 {is_inferred="true"} ! negative regulation of gene silencing by miRNA +is_a: GO:1905616 {is_inferred="true"} ! regulation of miRNA mediated inhibition of translation + +[Term] +id: GO:1905618 ! positive regulation of miRNA mediated inhibition of translation +is_a: GO:1905616 {is_inferred="true"} ! regulation of miRNA mediated inhibition of translation +is_a: GO:2000637 {is_inferred="true"} ! positive regulation of gene silencing by miRNA + +[Term] +id: GO:1905619 ! regulation of alpha-(1->3)-fucosyltransferase activity +is_a: GO:0019222 {is_inferred="true"} ! regulation of metabolic process +is_a: GO:0051338 {is_inferred="true"} ! regulation of transferase activity + +[Term] +id: GO:1905620 ! negative regulation of alpha-(1->3)-fucosyltransferase activity +is_a: GO:0009892 {is_inferred="true"} ! negative regulation of metabolic process +is_a: GO:0051348 {is_inferred="true"} ! negative regulation of transferase activity +is_a: GO:1905619 {is_inferred="true"} ! regulation of alpha-(1->3)-fucosyltransferase activity + +[Term] +id: GO:1905621 ! positive regulation of alpha-(1->3)-fucosyltransferase activity +is_a: GO:0009893 {is_inferred="true"} ! positive regulation of metabolic process +is_a: GO:0051347 {is_inferred="true"} ! positive regulation of transferase activity +is_a: GO:1905619 {is_inferred="true"} ! regulation of alpha-(1->3)-fucosyltransferase activity + +[Term] +id: GO:1905622 ! negative regulation of leaf development +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:2000024 {is_inferred="true"} ! regulation of leaf development + +[Term] +id: GO:1905623 ! positive regulation of leaf development +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:2000024 {is_inferred="true"} ! regulation of leaf development + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36591 | paola | 2016-10-27 08:02:56 -0700 (Thu, 27 Oct 2016) | 2 lines GO:0043936 asexual sporulation resulting in the formation of a cellular spore #12744 - work in progress - added synonyms changes in entailments ------------------------------------------------------------------------ r36589 | paola | 2016-10-27 07:48:19 -0700 (Thu, 27 Oct 2016) | 2 lines GH Revise def: GO:0048315 conidium formation #12743 - closed changes in entailments ------------------------------------------------------------------------ r36586 | paola | 2016-10-27 07:15:43 -0700 (Thu, 27 Oct 2016) | 2 lines Fixing synonyms scope for GO:1902426 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36586) +++ go_inferences.obo (working copy) @@ -75101,7 +75101,7 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] -id: GO:1902426 ! negative regulation of mitotic spindle assembly checkpoint +id: GO:1902426 ! deactivation of mitotic spindle assembly checkpoint is_a: GO:0045842 {is_inferred="true"} ! positive regulation of mitotic metaphase/anaphase transition is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle is_a: GO:0090233 {is_inferred="true"} ! negative regulation of spindle checkpoint ------------------------------------------------------------------------ r36578 | paola | 2016-10-27 03:41:22 -0700 (Thu, 27 Oct 2016) | 3 lines GH urate excretion #12759 - closed - added GO:0097744 urate salt excretion changes in entailments ------------------------------------------------------------------------ r36573 | dph | 2016-10-26 12:34:20 -0700 (Wed, 26 Oct 2016) | 2 lines Added synonyms to laminin complex terms. changes in entailments ------------------------------------------------------------------------ r36570 | termgenie | 2016-10-26 12:19:47 -0700 (Wed, 26 Oct 2016) | 3 lines TermGenie commit for user: nc reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36570) +++ go_inferences.obo (working copy) @@ -90436,6 +90436,30 @@ is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] +id: GO:1905595 ! regulation of low-density lipoprotein particle receptor binding +is_a: GO:1900120 {is_inferred="true"} ! regulation of receptor binding + +[Term] +id: GO:1905596 ! negative regulation of low-density lipoprotein particle receptor binding +is_a: GO:1900121 {is_inferred="true"} ! negative regulation of receptor binding +is_a: GO:1905595 {is_inferred="true"} ! regulation of low-density lipoprotein particle receptor binding + +[Term] +id: GO:1905597 ! positive regulation of low-density lipoprotein particle receptor binding +is_a: GO:1900122 {is_inferred="true"} ! positive regulation of receptor binding +is_a: GO:1905595 {is_inferred="true"} ! regulation of low-density lipoprotein particle receptor binding + +[Term] +id: GO:1905598 ! negative regulation of low-density lipoprotein receptor activity +is_a: GO:0048261 {is_inferred="true"} ! negative regulation of receptor-mediated endocytosis +is_a: GO:2000272 {is_inferred="true"} ! negative regulation of receptor activity + +[Term] +id: GO:1905599 ! positive regulation of low-density lipoprotein receptor activity +is_a: GO:0048260 {is_inferred="true"} ! positive regulation of receptor-mediated endocytosis +is_a: GO:2000273 {is_inferred="true"} ! positive regulation of receptor activity + +[Term] id: GO:1905600 ! regulation of receptor-mediated endocytosis involved in cholesterol transport is_a: GO:0032383 {is_inferred="true"} ! regulation of intracellular cholesterol transport is_a: GO:0048259 {is_inferred="true"} ! regulation of receptor-mediated endocytosis ------------------------------------------------------------------------ r36567 | dph | 2016-10-26 12:09:48 -0700 (Wed, 26 Oct 2016) | 2 lines Added laminin5B complex. changes in entailments ------------------------------------------------------------------------ r36563 | paola | 2016-10-26 08:28:44 -0700 (Wed, 26 Oct 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress changes in entailments ------------------------------------------------------------------------ r36561 | paola | 2016-10-26 07:57:19 -0700 (Wed, 26 Oct 2016) | 2 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress changes in entailments ------------------------------------------------------------------------ r36559 | paola | 2016-10-26 07:41:52 -0700 (Wed, 26 Oct 2016) | 2 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36559) +++ go_inferences.obo (working copy) @@ -310,7 +310,7 @@ [Term] id: GO:0000145 ! exocyst -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0000147 ! actin cortical patch assembly @@ -1009,7 +1009,7 @@ [Term] id: GO:0000938 ! GARP complex is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0000941 ! condensed nuclear chromosome inner kinetochore @@ -17116,7 +17116,7 @@ [Term] id: GO:0017119 ! Golgi transport complex -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0017122 ! protein N-acetylglucosaminyltransferase complex @@ -20103,7 +20103,7 @@ [Term] id: GO:0030008 ! TRAPP complex -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0030015 ! CCR4-NOT core complex @@ -21433,7 +21433,7 @@ [Term] id: GO:0030897 ! HOPS complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0030904 ! retromer complex @@ -26686,7 +26686,7 @@ [Term] id: GO:0033263 ! CORVET complex -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0033265 ! choline binding @@ -53090,7 +53090,7 @@ [Term] id: GO:0070939 ! Dsl1/NZR complex -is_a: GO:0099023 {is_inferred="true"} ! tethring complex +is_a: GO:0099023 {is_inferred="true"} ! tethering complex [Term] id: GO:0070948 ! regulation of neutrophil mediated cytotoxicity @@ -61730,7 +61730,7 @@ is_a: GO:0044448 {is_inferred="true"} ! cell cortex part [Term] -id: GO:0099023 ! tethring complex +id: GO:0099023 ! tethering complex is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] ------------------------------------------------------------------------ r36554 | termgenie | 2016-10-26 06:06:47 -0700 (Wed, 26 Oct 2016) | 4 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36555) +++ go_inferences.obo (working copy) @@ -90436,6 +90436,23 @@ is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] +id: GO:1905600 ! regulation of receptor-mediated endocytosis involved in cholesterol transport +is_a: GO:0032383 {is_inferred="true"} ! regulation of intracellular cholesterol transport +is_a: GO:0048259 {is_inferred="true"} ! regulation of receptor-mediated endocytosis + +[Term] +id: GO:1905601 ! negative regulation of receptor-mediated endocytosis involved in cholesterol transport +is_a: GO:0032384 {is_inferred="true"} ! negative regulation of intracellular cholesterol transport +is_a: GO:0048261 {is_inferred="true"} ! negative regulation of receptor-mediated endocytosis +is_a: GO:1905600 {is_inferred="true"} ! regulation of receptor-mediated endocytosis involved in cholesterol transport + +[Term] +id: GO:1905602 ! positive regulation of receptor-mediated endocytosis involved in cholesterol transport +is_a: GO:0032385 {is_inferred="true"} ! positive regulation of intracellular cholesterol transport +is_a: GO:0048260 {is_inferred="true"} ! positive regulation of receptor-mediated endocytosis +is_a: GO:1905600 {is_inferred="true"} ! regulation of receptor-mediated endocytosis involved in cholesterol transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36553 | paola | 2016-10-26 06:00:14 -0700 (Wed, 26 Oct 2016) | 2 lines GH OTR: capturing targets of endocytosis #12746 - work in progress (fixed synonym scope) changes in entailments ------------------------------------------------------------------------ r36547 | paola | 2016-10-26 05:42:43 -0700 (Wed, 26 Oct 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress changes in entailments ------------------------------------------------------------------------ r36545 | paola | 2016-10-26 04:49:04 -0700 (Wed, 26 Oct 2016) | 3 lines GH OTR: capturing targets of endocytosis #12746 - work in progress changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36545) +++ go_inferences.obo (working copy) @@ -58324,8 +58324,8 @@ is_a: GO:0006900 {is_inferred="true"} ! membrane budding [Term] -id: GO:0090118 ! receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +id: GO:0090118 ! receptor-mediated endocytosis involved in cholesterol transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0090119 ! vesicle-mediated cholesterol transport ------------------------------------------------------------------------ r36543 | paola | 2016-10-26 02:49:01 -0700 (Wed, 26 Oct 2016) | 3 lines GH NTR negative regulation of ferrichrome biosynthetic process, in response to iron #12740 - closed - obsoleted GO:1905525 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36543) +++ go_inferences.obo (working copy) @@ -90111,11 +90111,6 @@ is_a: GO:1902498 {is_inferred="true"} ! regulation of protein autoubiquitination [Term] -id: GO:1905525 ! regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron -is_a: GO:0034396 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter in response to iron -is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process - -[Term] id: GO:1905526 ! regulation of Golgi lumen acidification is_a: GO:0032847 {is_inferred="true"} ! regulation of cellular pH reduction ------------------------------------------------------------------------ r36540 | termgenie | 2016-10-25 17:46:08 -0700 (Tue, 25 Oct 2016) | 2 lines TermGenie commit for user: pga reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36540) +++ go_inferences.obo (working copy) @@ -90413,6 +90413,34 @@ is_a: GO:0009827 {is_inferred="true"} ! plant-type cell wall modification [Term] +id: GO:1905589 ! positive regulation of L-arginine import across plasma membrane +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1902828 {is_inferred="true"} ! positive regulation of L-arginine import into cell +is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane + +[Term] +id: GO:1905590 ! fibronectin fibril organization +is_a: GO:0030198 {is_inferred="true"} ! extracellular matrix organization + +[Term] +id: GO:1905591 ! regulation of optical nerve axon regeneration +is_a: GO:0048679 {is_inferred="true"} ! regulation of axon regeneration + +[Term] +id: GO:1905592 ! negative regulation of optical nerve axon regeneration +is_a: GO:0048681 {is_inferred="true"} ! negative regulation of axon regeneration +is_a: GO:1905591 {is_inferred="true"} ! regulation of optical nerve axon regeneration + +[Term] +id: GO:1905593 ! positive regulation of optical nerve axon regeneration +is_a: GO:0048680 {is_inferred="true"} ! positive regulation of axon regeneration +is_a: GO:1905591 {is_inferred="true"} ! regulation of optical nerve axon regeneration + +[Term] +id: GO:1905594 ! resveratrol binding +is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36533 | paola | 2016-10-25 07:37:49 -0700 (Tue, 25 Oct 2016) | 2 lines GH GO:0008280 cohesin core heterodimer #12598 - work in progress (merge) changes in entailments ------------------------------------------------------------------------ r36528 | mcourtot | 2016-10-25 06:41:02 -0700 (Tue, 25 Oct 2016) | 1 line cleaned up logical axioms phosphatase - again ;) changes in entailments ------------------------------------------------------------------------ r36528 | mcourtot | 2016-10-25 06:41:02 -0700 (Tue, 25 Oct 2016) | 1 line cleaned up logical axioms phosphatase - again ;) changes in entailments ------------------------------------------------------------------------ r36523 | mcourtot | 2016-10-25 06:00:24 -0700 (Tue, 25 Oct 2016) | 1 line added parentage to 'disulfide oxidoreductase activity' as per https://github.com/geneontology/go-ontology/issues/12752 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36523) +++ go_inferences.obo (working copy) @@ -90393,20 +90393,24 @@ [Term] id: GO:1905584 ! outer hair cell apoptotic process -is_a: GO:0006915 {is_inferred="true"} ! apoptotic process +is_a: GO:0051402 {is_inferred="true"} ! neuron apoptotic process +is_a: GO:1904019 {is_inferred="true"} ! epithelial cell apoptotic process [Term] id: GO:1905585 ! regulation of outer hair cell apoptotic process -is_a: GO:0042981 {is_inferred="true"} ! regulation of apoptotic process +is_a: GO:0043523 {is_inferred="true"} ! regulation of neuron apoptotic process +is_a: GO:1904035 {is_inferred="true"} ! regulation of epithelial cell apoptotic process [Term] id: GO:1905586 ! negative regulation of outer hair cell apoptotic process -is_a: GO:0043066 {is_inferred="true"} ! negative regulation of apoptotic process +is_a: GO:0043524 {is_inferred="true"} ! negative regulation of neuron apoptotic process +is_a: GO:1904036 {is_inferred="true"} ! negative regulation of epithelial cell apoptotic process is_a: GO:1905585 {is_inferred="true"} ! regulation of outer hair cell apoptotic process [Term] id: GO:1905587 ! positive regulation of outer hair cell apoptotic process -is_a: GO:0043065 {is_inferred="true"} ! positive regulation of apoptotic process +is_a: GO:0043525 {is_inferred="true"} ! positive regulation of neuron apoptotic process +is_a: GO:1904037 {is_inferred="true"} ! positive regulation of epithelial cell apoptotic process is_a: GO:1905585 {is_inferred="true"} ! regulation of outer hair cell apoptotic process [Term] ------------------------------------------------------------------------ r36511 | termgenie | 2016-10-24 17:32:29 -0700 (Mon, 24 Oct 2016) | 2 lines TermGenie commit for user: lr reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36511) +++ go_inferences.obo (working copy) @@ -90410,6 +90410,10 @@ is_a: GO:1905585 {is_inferred="true"} ! regulation of outer hair cell apoptotic process [Term] +id: GO:1905588 ! plant-type cell wall modification involved in stomatal movement +is_a: GO:0009827 {is_inferred="true"} ! plant-type cell wall modification + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36509 | termgenie | 2016-10-24 17:20:07 -0700 (Mon, 24 Oct 2016) | 4 lines TermGenie commit for user: sl reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36509) +++ go_inferences.obo (working copy) @@ -90396,6 +90396,20 @@ is_a: GO:0006915 {is_inferred="true"} ! apoptotic process [Term] +id: GO:1905585 ! regulation of outer hair cell apoptotic process +is_a: GO:0042981 {is_inferred="true"} ! regulation of apoptotic process + +[Term] +id: GO:1905586 ! negative regulation of outer hair cell apoptotic process +is_a: GO:0043066 {is_inferred="true"} ! negative regulation of apoptotic process +is_a: GO:1905585 {is_inferred="true"} ! regulation of outer hair cell apoptotic process + +[Term] +id: GO:1905587 ! positive regulation of outer hair cell apoptotic process +is_a: GO:0043065 {is_inferred="true"} ! positive regulation of apoptotic process +is_a: GO:1905585 {is_inferred="true"} ! regulation of outer hair cell apoptotic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36504 | dph | 2016-10-24 11:16:30 -0700 (Mon, 24 Oct 2016) | 2 lines Added fibronectin fiber as part of completing GH12640. changes in entailments ------------------------------------------------------------------------ r36504 | dph | 2016-10-24 11:16:30 -0700 (Mon, 24 Oct 2016) | 2 lines Added fibronectin fiber as part of completing GH12640. changes in entailments ------------------------------------------------------------------------ r36502 | dph | 2016-10-24 09:52:32 -0700 (Mon, 24 Oct 2016) | 2 lines GH9135-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36502) +++ go_inferences.obo (working copy) @@ -35375,10 +35375,6 @@ is_a: GO:0016477 {is_inferred="true"} ! cell migration [Term] -id: GO:0044324 ! regulation of transcription involved in anterior/posterior axis specification -is_a: GO:0006355 {is_inferred="true"} ! regulation of transcription, DNA-templated - -[Term] id: GO:0044326 ! dendritic spine neck is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0097458 {is_inferred="true"} ! neuron part ------------------------------------------------------------------------ r36500 | mcourtot | 2016-10-24 08:05:23 -0700 (Mon, 24 Oct 2016) | 1 line added positive and negative regulation of liquid surface tension as per https://github.com/geneontology/go-ontology/issues/12758 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36500) +++ go_inferences.obo (working copy) @@ -62686,6 +62686,14 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] +id: GO:0101028 ! positive regulation of liquid surface tension +is_a: GO:0050828 {is_inferred="true"} ! regulation of liquid surface tension + +[Term] +id: GO:0101029 ! negative regulation of liquid surface tension +is_a: GO:0050828 {is_inferred="true"} ! regulation of liquid surface tension + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r36498 | mcourtot | 2016-10-24 07:30:07 -0700 (Mon, 24 Oct 2016) | 1 line parentage syndecan binding as per https://github.com/geneontology/go-ontology/issues/12588 changes in entailments ------------------------------------------------------------------------ r36493 | dph | 2016-10-24 07:21:02 -0700 (Mon, 24 Oct 2016) | 2 lines GH12699-closed changes in entailments ------------------------------------------------------------------------ r36489 | mcourtot | 2016-10-24 03:21:29 -0700 (Mon, 24 Oct 2016) | 1 line added GO_0101027, optical nerve axon regeneration as per https://github.com/geneontology/go-ontology/issues/12760 changes in entailments ------------------------------------------------------------------------ r36487 | termgenie | 2016-10-24 02:37:03 -0700 (Mon, 24 Oct 2016) | 2 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36487) +++ go_inferences.obo (working copy) @@ -90379,6 +90379,19 @@ is_a: GO:0010988 {is_inferred="true"} ! regulation of low-density lipoprotein particle clearance [Term] +id: GO:1905582 ! response to mannose +is_a: GO:0009746 {is_inferred="true"} ! response to hexose + +[Term] +id: GO:1905583 ! cellular response to mannose +is_a: GO:0071331 {is_inferred="true"} ! cellular response to hexose stimulus +is_a: GO:1905582 {is_inferred="true"} ! response to mannose + +[Term] +id: GO:1905584 ! outer hair cell apoptotic process +is_a: GO:0006915 {is_inferred="true"} ! apoptotic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36462 | tberardi | 2016-10-21 16:30:33 -0700 (Fri, 21 Oct 2016) | 1 line added term for FMN hydrolase activity changes in entailments ------------------------------------------------------------------------ r36460 | tberardi | 2016-10-21 16:04:40 -0700 (Fri, 21 Oct 2016) | 1 line added term for phosphomevalonate decarboxylase activity changes in entailments ------------------------------------------------------------------------ r36444 | paola | 2016-10-21 04:15:41 -0700 (Fri, 21 Oct 2016) | 2 lines Fixing error changes in entailments ------------------------------------------------------------------------ r36440 | paola | 2016-10-21 02:26:06 -0700 (Fri, 21 Oct 2016) | 2 lines Changing a has_part in starts_with changes in entailments ------------------------------------------------------------------------ r36439 | paola | 2016-10-21 02:23:11 -0700 (Fri, 21 Oct 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress - more edits changes in entailments ------------------------------------------------------------------------ r36437 | paola | 2016-10-21 02:13:02 -0700 (Fri, 21 Oct 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress - several edits changes in entailments ------------------------------------------------------------------------ r36435 | termgenie | 2016-10-21 01:48:10 -0700 (Fri, 21 Oct 2016) | 4 lines TermGenie commit for user: nc reviewed by pr changes in entailments ------------------------------------------------------------------------ r36433 | termgenie | 2016-10-21 01:29:50 -0700 (Fri, 21 Oct 2016) | 2 lines TermGenie commit for user: nc reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36433) +++ go_inferences.obo (working copy) @@ -90374,6 +90374,11 @@ is_a: GO:1905578 {is_inferred="true"} ! regulation of ERBB3 signaling pathway [Term] +id: GO:1905581 ! positive regulation of low-density lipoprotein particle clearance +is_a: GO:0010986 {is_inferred="true"} ! positive regulation of lipoprotein particle clearance +is_a: GO:0010988 {is_inferred="true"} ! regulation of low-density lipoprotein particle clearance + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36429 | dph | 2016-10-20 17:19:40 -0700 (Thu, 20 Oct 2016) | 2 lines GH12264-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36430) +++ go_inferences.obo (working copy) @@ -8060,7 +8060,6 @@ [Term] id: GO:0006895 ! Golgi to endosome transport -is_a: GO:0006896 {is_inferred="true"} ! Golgi to vacuole transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0016482 {is_inferred="true"} ! cytosolic transport @@ -8196,7 +8195,7 @@ [Term] id: GO:0007032 ! endosome organization -is_a: GO:0007033 {is_inferred="true"} ! vacuole organization +is_a: GO:0016050 {is_inferred="true"} ! vesicle organization [Term] id: GO:0007033 ! vacuole organization @@ -11207,7 +11206,8 @@ [Term] id: GO:0010008 ! endosome membrane -is_a: GO:0005774 {is_inferred="true"} ! vacuolar membrane +is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle +is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] id: GO:0010009 ! cytoplasmic side of endosome membrane @@ -16853,11 +16853,11 @@ [Term] id: GO:0016189 ! synaptic vesicle to endosome fusion -is_a: GO:0051469 {is_inferred="true"} ! vesicle fusion with vacuole +is_a: GO:0048284 {is_inferred="true"} ! organelle fusion [Term] id: GO:0016197 ! endosomal transport -is_a: GO:0007034 {is_inferred="true"} ! vacuolar transport +is_a: GO:0006810 {is_inferred="true"} ! transport [Term] id: GO:0016202 ! regulation of striated muscle tissue development @@ -22051,12 +22051,12 @@ [Term] id: GO:0031302 ! intrinsic component of endosome membrane -is_a: GO:0031310 {is_inferred="true"} ! intrinsic component of vacuolar membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane is_a: GO:0044440 {is_inferred="true"} ! endosomal part [Term] id: GO:0031303 ! integral component of endosome membrane -is_a: GO:0031166 {is_inferred="true"} ! integral component of vacuolar membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0031302 {is_inferred="true"} ! intrinsic component of endosome membrane [Term] @@ -22093,10 +22093,6 @@ is_a: GO:0044437 {is_inferred="true"} ! vacuolar part [Term] -id: GO:0031313 ! extrinsic component of endosome membrane -is_a: GO:0000306 {is_inferred="true"} ! extrinsic component of vacuolar membrane - -[Term] id: GO:0031321 ! ascospore-type prospore assembly is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis @@ -22959,10 +22955,6 @@ is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] -id: GO:0031904 ! endosome lumen -is_a: GO:0005775 {is_inferred="true"} ! vacuolar lumen - -[Term] id: GO:0031913 ! contractile vacuole pore is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -24329,7 +24321,7 @@ [Term] id: GO:0032439 ! endosome localization -is_a: GO:0051640 {is_inferred="true"} ! organelle localization +is_a: GO:0051648 {is_inferred="true"} ! vesicle localization [Term] id: GO:0032443 ! regulation of ergosterol biosynthetic process @@ -30443,7 +30435,7 @@ [Term] id: GO:0036010 ! protein localization to endosome -is_a: GO:0072665 {is_inferred="true"} ! protein localization to vacuole +is_a: GO:0033365 {is_inferred="true"} ! protein localization to organelle [Term] id: GO:0036035 ! osteoclast development @@ -35544,7 +35536,7 @@ [Term] id: GO:0044440 ! endosomal part -is_a: GO:0044437 {is_inferred="true"} ! vacuolar part +is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part [Term] id: GO:0044441 ! ciliary part @@ -51179,8 +51171,7 @@ [Term] id: GO:0061763 ! multivesicular body-lysosome fusion -is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion -is_a: GO:0097576 {is_inferred="true"} ! vacuole fusion +is_a: GO:0051469 {is_inferred="true"} ! vesicle fusion with vacuole [Term] id: GO:0061768 ! magnesium:sodium antiporter activity @@ -60241,15 +60232,13 @@ [Term] id: GO:0097488 ! multivesicular body, internal vesicle membrane -is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part is_a: GO:0044440 {is_inferred="true"} ! endosomal part is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle [Term] id: GO:0097489 ! multivesicular body, internal vesicle lumen -is_a: GO:0005775 {is_inferred="true"} ! vacuolar lumen -is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part is_a: GO:0044440 {is_inferred="true"} ! endosomal part +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen [Term] id: GO:0097495 ! H-NS-Hha complex @@ -61196,7 +61185,6 @@ id: GO:0098866 ! multivesicular body fusion to apical plasma membrane is_a: GO:0045026 {is_inferred="true"} ! plasma membrane fusion is_a: GO:0090174 {is_inferred="true"} ! organelle membrane fusion -is_a: GO:0097576 {is_inferred="true"} ! vacuole fusion [Term] id: GO:0098867 ! intramembranous bone growth @@ -61605,7 +61593,7 @@ is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse -is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole +is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport is_a: GO:1902946 {is_inferred="true"} ! protein localization to early endosome @@ -62339,7 +62327,7 @@ [Term] id: GO:0099646 ! neurotransmitter receptor transport, plasma membrane to endosome is_a: GO:0036010 {is_inferred="true"} ! protein localization to endosome -is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole +is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle [Term] id: GO:0099703 ! induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration @@ -75448,8 +75436,8 @@ [Term] id: GO:1902502 ! multivesicular body HOPS complex +is_a: GO:0030897 {is_inferred="true"} ! HOPS complex is_a: GO:0044440 {is_inferred="true"} ! endosomal part -is_a: GO:1902500 {is_inferred="true"} ! vacuolar HOPS complex [Term] id: GO:1902503 ! adenylyltransferase complex @@ -77622,13 +77610,11 @@ [Term] id: GO:1902954 ! regulation of early endosome to recycling endosome transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport is_a: GO:1903649 {is_inferred="true"} ! regulation of cytoplasmic transport [Term] id: GO:1902955 ! positive regulation of early endosome to recycling endosome transport is_a: GO:1902954 {is_inferred="true"} ! regulation of early endosome to recycling endosome transport -is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport is_a: GO:1903651 {is_inferred="true"} ! positive regulation of cytoplasmic transport [Term] @@ -87471,7 +87457,7 @@ [Term] id: GO:1904978 ! regulation of endosome organization -is_a: GO:0044088 {is_inferred="true"} ! regulation of vacuole organization +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization [Term] id: GO:1904979 ! negative regulation of endosome organization @@ -87480,7 +87466,7 @@ [Term] id: GO:1904980 ! positive regulation of endosome organization -is_a: GO:0044090 {is_inferred="true"} ! positive regulation of vacuole organization +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization is_a: GO:1904978 {is_inferred="true"} ! regulation of endosome organization [Term] @@ -88932,18 +88918,15 @@ [Term] id: GO:1905279 ! regulation of retrograde transport, endosome to Golgi is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport is_a: GO:1903649 {is_inferred="true"} ! regulation of cytoplasmic transport [Term] id: GO:1905280 ! negative regulation of retrograde transport, endosome to Golgi -is_a: GO:1903336 {is_inferred="true"} ! negative regulation of vacuolar transport is_a: GO:1903650 {is_inferred="true"} ! negative regulation of cytoplasmic transport is_a: GO:1905279 {is_inferred="true"} ! regulation of retrograde transport, endosome to Golgi [Term] id: GO:1905281 ! positive regulation of retrograde transport, endosome to Golgi -is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport is_a: GO:1903651 {is_inferred="true"} ! positive regulation of cytoplasmic transport is_a: GO:1905279 {is_inferred="true"} ! regulation of retrograde transport, endosome to Golgi @@ -94657,18 +94640,15 @@ [Term] id: GO:2000641 ! regulation of early endosome to late endosome transport is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport is_a: GO:1903649 {is_inferred="true"} ! regulation of cytoplasmic transport [Term] id: GO:2000642 ! negative regulation of early endosome to late endosome transport -is_a: GO:1903336 {is_inferred="true"} ! negative regulation of vacuolar transport is_a: GO:1903650 {is_inferred="true"} ! negative regulation of cytoplasmic transport is_a: GO:2000641 {is_inferred="true"} ! regulation of early endosome to late endosome transport [Term] id: GO:2000643 ! positive regulation of early endosome to late endosome transport -is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport is_a: GO:1903651 {is_inferred="true"} ! positive regulation of cytoplasmic transport is_a: GO:2000641 {is_inferred="true"} ! regulation of early endosome to late endosome transport @@ -97151,16 +97131,15 @@ [Term] id: GO:2001135 ! regulation of endocytic recycling is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport -is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport [Term] id: GO:2001136 ! negative regulation of endocytic recycling -is_a: GO:1903336 {is_inferred="true"} ! negative regulation of vacuolar transport +is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport is_a: GO:2001135 {is_inferred="true"} ! regulation of endocytic recycling [Term] id: GO:2001137 ! positive regulation of endocytic recycling -is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport +is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport is_a: GO:2001135 {is_inferred="true"} ! regulation of endocytic recycling [Term] ------------------------------------------------------------------------ r36428 | dph | 2016-10-20 17:10:41 -0700 (Thu, 20 Oct 2016) | 2 lines GH12720-closed changes in entailments ------------------------------------------------------------------------ r36419 | dph | 2016-10-20 08:28:37 -0700 (Thu, 20 Oct 2016) | 2 lines GH12755-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36419) +++ go_inferences.obo (working copy) @@ -90353,27 +90353,28 @@ [Term] id: GO:1905572 ! ganglioside GM1 transport to membrane -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0035627 {is_inferred="true"} ! ceramide transport +is_a: GO:0046836 {is_inferred="true"} ! glycolipid transport [Term] id: GO:1905573 ! ganglioside GM1 binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905574 ! ganglioside GM2 binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905575 ! ganglioside GM3 binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905576 ! ganglioside GT1b binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905577 ! ganglioside GP1c binding -is_a: GO:0005488 {is_inferred="true"} ! binding +is_a: GO:0035594 {is_inferred="true"} ! ganglioside binding [Term] id: GO:1905578 ! regulation of ERBB3 signaling pathway ------------------------------------------------------------------------ r36403 | termgenie | 2016-10-19 07:11:50 -0700 (Wed, 19 Oct 2016) | 4 lines TermGenie commit for user: als reviewed by pr changes in entailments ------------------------------------------------------------------------ r36403 | termgenie | 2016-10-19 07:11:50 -0700 (Wed, 19 Oct 2016) | 4 lines TermGenie commit for user: als reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36403) +++ go_inferences.obo (working copy) @@ -90376,6 +90376,20 @@ is_a: GO:0005488 {is_inferred="true"} ! binding [Term] +id: GO:1905578 ! regulation of ERBB3 signaling pathway +is_a: GO:1901184 {is_inferred="true"} ! regulation of ERBB signaling pathway + +[Term] +id: GO:1905579 ! negative regulation of ERBB3 signaling pathway +is_a: GO:1901185 {is_inferred="true"} ! negative regulation of ERBB signaling pathway +is_a: GO:1905578 {is_inferred="true"} ! regulation of ERBB3 signaling pathway + +[Term] +id: GO:1905580 ! positive regulation of ERBB3 signaling pathway +is_a: GO:1901186 {is_inferred="true"} ! positive regulation of ERBB signaling pathway +is_a: GO:1905578 {is_inferred="true"} ! regulation of ERBB3 signaling pathway + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36401 | termgenie | 2016-10-19 07:04:46 -0700 (Wed, 19 Oct 2016) | 5 lines TermGenie commit for user: pga reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36401) +++ go_inferences.obo (working copy) @@ -90347,6 +90347,35 @@ is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process [Term] +id: GO:1905571 ! interleukin-10 receptor complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0043235 {is_inferred="true"} ! receptor complex + +[Term] +id: GO:1905572 ! ganglioside GM1 transport to membrane +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] +id: GO:1905573 ! ganglioside GM1 binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] +id: GO:1905574 ! ganglioside GM2 binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] +id: GO:1905575 ! ganglioside GM3 binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] +id: GO:1905576 ! ganglioside GT1b binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] +id: GO:1905577 ! ganglioside GP1c binding +is_a: GO:0005488 {is_inferred="true"} ! binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36394 | paola | 2016-10-19 06:23:23 -0700 (Wed, 19 Oct 2016) | 2 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - de novo centriole assembly terms changes in entailments ------------------------------------------------------------------------ r36386 | paola | 2016-10-19 02:38:25 -0700 (Wed, 19 Oct 2016) | 3 lines GH NTRs for ciliary CC terms: paraflagellar rod and mastigoneme #12733 - work in progress - added ‘paraflagellar rod’ and ‘mastigoneme’ changes in entailments ------------------------------------------------------------------------ r36386 | paola | 2016-10-19 02:38:25 -0700 (Wed, 19 Oct 2016) | 3 lines GH NTRs for ciliary CC terms: paraflagellar rod and mastigoneme #12733 - work in progress - added ‘paraflagellar rod’ and ‘mastigoneme’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36386) +++ go_inferences.obo (working copy) @@ -60359,6 +60359,14 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] +id: GO:0097740 ! paraflagellar rod +is_a: GO:0044441 {is_inferred="true"} ! ciliary part + +[Term] +id: GO:0097741 ! mastigoneme +is_a: GO:0044441 {is_inferred="true"} ! ciliary part + +[Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly ------------------------------------------------------------------------ r36384 | paola | 2016-10-19 01:48:32 -0700 (Wed, 19 Oct 2016) | 2 lines Removing stray links to morphogenesis terms changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36384) +++ go_inferences.obo (working copy) @@ -8477,6 +8477,7 @@ [Term] id: GO:0007288 ! sperm axoneme assembly is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007289 ! spermatid nucleus differentiation @@ -51774,10 +51775,6 @@ is_a: GO:0070279 {is_inferred="true"} ! vitamin B6 binding [Term] -id: GO:0070286 ! axonemal dynein complex assembly -is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis - -[Term] id: GO:0070291 ! N-acylethanolamine metabolic process is_a: GO:0034308 {is_inferred="true"} ! primary alcohol metabolic process is_a: GO:0042439 {is_inferred="true"} ! ethanolamine-containing compound metabolic process @@ -83442,7 +83439,7 @@ [Term] id: GO:1904158 ! axonemal central apparatus assembly -is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] id: GO:1904159 ! megasporocyte differentiation ------------------------------------------------------------------------ r36382 | paola | 2016-10-19 01:34:27 -0700 (Wed, 19 Oct 2016) | 2 lines Fixing intersections post-merge changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36382) +++ go_inferences.obo (working copy) @@ -35611,6 +35611,10 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] +id: GO:0044458 ! motile cilium assembly +is_a: GO:0060271 {is_inferred="true"} ! cilium assembly + +[Term] id: GO:0044459 ! plasma membrane part is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044464 {is_inferred="true"} ! cell part @@ -38062,7 +38066,6 @@ [Term] id: GO:0045724 ! positive regulation of cilium assembly is_a: GO:0031346 {is_inferred="true"} ! positive regulation of cell projection organization -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly @@ -48149,6 +48152,12 @@ is_a: GO:0060263 {is_inferred="true"} ! regulation of respiratory burst [Term] +id: GO:0060271 ! cilium assembly +is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly +is_a: GO:0044782 {is_inferred="true"} ! cilium organization +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly + +[Term] id: GO:0060278 ! regulation of ovulation is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process @@ -73092,7 +73101,6 @@ [Term] id: GO:1902017 ! regulation of cilium assembly -is_a: GO:0022604 {is_inferred="true"} ! regulation of cell morphogenesis is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly @@ -73099,7 +73107,6 @@ [Term] id: GO:1902018 ! negative regulation of cilium assembly is_a: GO:0031345 {is_inferred="true"} ! negative regulation of cell projection organization -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly @@ -90070,6 +90077,10 @@ is_a: GO:1905512 {is_inferred="true"} ! regulation of short-term synaptic potentiation [Term] +id: GO:1905515 ! non-motile cilium assembly +is_a: GO:0060271 {is_inferred="true"} ! cilium assembly + +[Term] id: GO:1905516 ! positive regulation of fertilization is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization ------------------------------------------------------------------------ r36364 | paola | 2016-10-18 08:55:30 -0700 (Tue, 18 Oct 2016) | 2 lines GH NTR: substrate mycelium formation #12742 - work in progress - added PMID changes in entailments ------------------------------------------------------------------------ r36364 | paola | 2016-10-18 08:55:30 -0700 (Tue, 18 Oct 2016) | 2 lines GH NTR: substrate mycelium formation #12742 - work in progress - added PMID changes in entailments ------------------------------------------------------------------------ r36362 | paola | 2016-10-18 08:03:55 -0700 (Tue, 18 Oct 2016) | 3 lines GH NTR negative regulation of ferrichrome biosynthetic process, in response to iron #12740 - work in progress - added GO:0097739 negative regulation of ferrichrome biosynthetic process in response to iron changes in entailments ------------------------------------------------------------------------ r36360 | termgenie | 2016-10-18 07:52:49 -0700 (Tue, 18 Oct 2016) | 4 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36360) +++ go_inferences.obo (working copy) @@ -66176,17 +66176,17 @@ [Term] id: GO:1900678 ! regulation of ferricrocin biosynthetic process -is_a: GO:1900704 {is_inferred="true"} ! regulation of siderophore biosynthetic process +is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process [Term] id: GO:1900679 ! negative regulation of ferricrocin biosynthetic process is_a: GO:1900678 {is_inferred="true"} ! regulation of ferricrocin biosynthetic process -is_a: GO:1900705 {is_inferred="true"} ! negative regulation of siderophore biosynthetic process +is_a: GO:1905569 {is_inferred="true"} ! negative regulation of ferrichrome biosynthetic process [Term] id: GO:1900680 ! positive regulation of ferricrocin biosynthetic process is_a: GO:1900678 {is_inferred="true"} ! regulation of ferricrocin biosynthetic process -is_a: GO:1900706 {is_inferred="true"} ! positive regulation of siderophore biosynthetic process +is_a: GO:1905570 {is_inferred="true"} ! positive regulation of ferrichrome biosynthetic process [Term] id: GO:1900681 ! octadecene metabolic process @@ -90133,7 +90133,7 @@ [Term] id: GO:1905525 ! regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron is_a: GO:0034396 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter in response to iron -is_a: GO:1900704 {is_inferred="true"} ! regulation of siderophore biosynthetic process +is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process [Term] id: GO:1905526 ! regulation of Golgi lumen acidification @@ -90335,6 +90335,20 @@ is_a: GO:1905562 {is_inferred="true"} ! regulation of vascular endothelial cell proliferation [Term] +id: GO:1905568 ! regulation of ferrichrome biosynthetic process +is_a: GO:1900704 {is_inferred="true"} ! regulation of siderophore biosynthetic process + +[Term] +id: GO:1905569 ! negative regulation of ferrichrome biosynthetic process +is_a: GO:1900705 {is_inferred="true"} ! negative regulation of siderophore biosynthetic process +is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process + +[Term] +id: GO:1905570 ! positive regulation of ferrichrome biosynthetic process +is_a: GO:1900706 {is_inferred="true"} ! positive regulation of siderophore biosynthetic process +is_a: GO:1905568 {is_inferred="true"} ! regulation of ferrichrome biosynthetic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36357 | paola | 2016-10-18 07:28:31 -0700 (Tue, 18 Oct 2016) | 2 lines Removed extra synonyms from last commit changes in entailments ------------------------------------------------------------------------ r36356 | paola | 2016-10-18 07:24:48 -0700 (Tue, 18 Oct 2016) | 3 lines NTR: substrate mycelium formation #12742 - work in progress - added GO:0097738 substrate mycelium formation changes in entailments ------------------------------------------------------------------------ r36354 | paola | 2016-10-18 06:25:52 -0700 (Tue, 18 Oct 2016) | 3 lines GH term name consistency, kinetochore attachment #12738 - closed - edited terms as detailed in ticket changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36354) +++ go_inferences.obo (working copy) @@ -75097,22 +75097,22 @@ is_a: GO:1902421 {is_inferred="true"} ! hydrogen metabolic process [Term] -id: GO:1902423 ! regulation of mitotic attachment of spindle microtubules to kinetochore +id: GO:1902423 ! regulation of attachment of mitotic spindle microtubules to kinetochore is_a: GO:0033047 {is_inferred="true"} ! regulation of mitotic sister chromatid segregation is_a: GO:0051988 {is_inferred="true"} ! regulation of attachment of spindle microtubules to kinetochore is_a: GO:0090235 {is_inferred="true"} ! regulation of metaphase plate congression [Term] -id: GO:1902424 ! negative regulation of mitotic attachment of spindle microtubules to kinetochore +id: GO:1902424 ! negative regulation of attachment of mitotic spindle microtubules to kinetochore is_a: GO:0033048 {is_inferred="true"} ! negative regulation of mitotic sister chromatid segregation is_a: GO:0051986 {is_inferred="true"} ! negative regulation of attachment of spindle microtubules to kinetochore -is_a: GO:1902423 {is_inferred="true"} ! regulation of mitotic attachment of spindle microtubules to kinetochore +is_a: GO:1902423 {is_inferred="true"} ! regulation of attachment of mitotic spindle microtubules to kinetochore [Term] id: GO:1902425 ! positive regulation of attachment of mitotic spindle microtubules to kinetochore is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division is_a: GO:0051987 {is_inferred="true"} ! positive regulation of attachment of spindle microtubules to kinetochore -is_a: GO:1902423 {is_inferred="true"} ! regulation of mitotic attachment of spindle microtubules to kinetochore +is_a: GO:1902423 {is_inferred="true"} ! regulation of attachment of mitotic spindle microtubules to kinetochore is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] @@ -88146,7 +88146,7 @@ [Term] id: GO:1905115 ! regulation of lateral attachment of mitotic spindle microtubules to kinetochore -is_a: GO:1902423 {is_inferred="true"} ! regulation of mitotic attachment of spindle microtubules to kinetochore +is_a: GO:1902423 {is_inferred="true"} ! regulation of attachment of mitotic spindle microtubules to kinetochore [Term] id: GO:1905116 ! positive regulation of lateral attachment of mitotic spindle microtubules to kinetochore ------------------------------------------------------------------------ r36346 | tberardi | 2016-10-17 17:30:07 -0700 (Mon, 17 Oct 2016) | 1 line GH11313 cleaning up plant-type sporogenesis changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36346) +++ go_inferences.obo (working copy) @@ -42481,9 +42481,8 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism [Term] -id: GO:0048236 ! plant-type spore development -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction -is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development +id: GO:0048236 ! plant-type sporogenesis +is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] id: GO:0048237 ! rough endoplasmic reticulum lumen ------------------------------------------------------------------------ r36344 | termgenie | 2016-10-17 13:18:47 -0700 (Mon, 17 Oct 2016) | 4 lines TermGenie commit for user: nc reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36344) +++ go_inferences.obo (working copy) @@ -90322,6 +90322,20 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] +id: GO:1905562 ! regulation of vascular endothelial cell proliferation +is_a: GO:0001936 {is_inferred="true"} ! regulation of endothelial cell proliferation + +[Term] +id: GO:1905563 ! negative regulation of vascular endothelial cell proliferation +is_a: GO:0001937 {is_inferred="true"} ! negative regulation of endothelial cell proliferation +is_a: GO:1905562 {is_inferred="true"} ! regulation of vascular endothelial cell proliferation + +[Term] +id: GO:1905564 ! positive regulation of vascular endothelial cell proliferation +is_a: GO:0001938 {is_inferred="true"} ! positive regulation of endothelial cell proliferation +is_a: GO:1905562 {is_inferred="true"} ! regulation of vascular endothelial cell proliferation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36336 | paola | 2016-10-17 02:39:31 -0700 (Mon, 17 Oct 2016) | 2 lines Fixing ASCII error changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36336) +++ go_inferences.obo (working copy) @@ -30032,7 +30032,7 @@ is_a: GO:0005488 {is_inferred="true"} ! binding [Term] -id: GO:0035735 ! intraciliary transport involved in cilium morphogenesis +id: GO:0035735 ! intraciliary transport involved in cilium assembly is_a: GO:0042073 {is_inferred="true"} ! intraciliary transport [Term] ------------------------------------------------------------------------ r36333 | termgenie | 2016-10-17 00:27:33 -0700 (Mon, 17 Oct 2016) | 4 lines TermGenie commit for user: pad reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36333) +++ go_inferences.obo (working copy) @@ -15089,10 +15089,6 @@ is_a: GO:0005371 {is_inferred="true"} ! tricarboxylate secondary active transmembrane transporter activity [Term] -id: GO:0015520 ! tetracycline:proton antiporter activity -is_a: GO:1901618 {is_inferred="true"} ! organic hydroxy compound transmembrane transporter activity - -[Term] id: GO:0015523 ! arabinose efflux transmembrane transporter activity is_a: GO:0015562 {is_inferred="true"} ! efflux transmembrane transporter activity is_a: GO:0042900 {is_inferred="true"} ! arabinose transmembrane transporter activity @@ -16170,7 +16166,7 @@ [Term] id: GO:0015904 ! tetracycline transport -is_a: GO:0015850 {is_inferred="true"} ! organic hydroxy compound transport +is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] id: GO:0015905 ! bicyclomycin transport @@ -17200,11 +17196,7 @@ [Term] id: GO:0018189 ! pyrroloquinoline quinone biosynthetic process -is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0072351 {is_inferred="true"} ! tricarboxylic acid biosynthetic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process -is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process -is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] id: GO:0018396 ! peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine @@ -17693,6 +17685,10 @@ is_a: GO:0032787 {is_inferred="true"} ! monocarboxylic acid metabolic process [Term] +id: GO:0018981 ! triethanolamine metabolic process +is_a: GO:0019751 {is_inferred="true"} ! polyol metabolic process + +[Term] id: GO:0018982 ! vanillin metabolic process is_a: GO:0006081 {is_inferred="true"} ! cellular aldehyde metabolic process is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process @@ -26211,15 +26207,21 @@ [Term] id: GO:0033069 ! ansamycin metabolic process -is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:0043603 {is_inferred="true"} ! cellular amide metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process +is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0033070 ! ansamycin biosynthetic process +is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process is_a: GO:0033069 {is_inferred="true"} ! ansamycin metabolic process -is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process +is_a: GO:0043604 {is_inferred="true"} ! amide biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] id: GO:0033071 ! vancomycin metabolic process @@ -26877,11 +26879,13 @@ id: GO:0033329 ! kaempferol O-glucoside metabolic process is_a: GO:0051552 {is_inferred="true"} ! flavone metabolic process is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process +is_a: GO:1901804 {is_inferred="true"} ! beta-glucoside metabolic process [Term] id: GO:0033330 ! kaempferol O-glucoside biosynthetic process is_a: GO:0051553 {is_inferred="true"} ! flavone biosynthetic process is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process +is_a: GO:1901806 {is_inferred="true"} ! beta-glucoside biosynthetic process [Term] id: GO:0033331 ! ent-kaurene metabolic process @@ -30642,22 +30646,19 @@ [Term] id: GO:0036182 ! asperthecin metabolic process -is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] id: GO:0036183 ! asperthecin catabolic process -is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0036182 {is_inferred="true"} ! asperthecin metabolic process -is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901662 {is_inferred="true"} ! quinone catabolic process [Term] id: GO:0036184 ! asperthecin biosynthetic process -is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0036182 {is_inferred="true"} ! asperthecin metabolic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] @@ -34907,7 +34908,6 @@ [Term] id: GO:0043643 ! tetracycline metabolic process -is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process @@ -34915,7 +34915,6 @@ id: GO:0043644 ! tetracycline biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process is_a: GO:0043643 {is_inferred="true"} ! tetracycline metabolic process -is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process [Term] id: GO:0043645 ! cephalosporin metabolic process @@ -35699,12 +35698,16 @@ [Term] id: GO:0044597 ! daunorubicin metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] id: GO:0044598 ! doxorubicin metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process +is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] @@ -40292,7 +40295,7 @@ [Term] id: GO:0046267 ! triethanolamine catabolic process is_a: GO:0018981 {is_inferred="true"} ! triethanolamine metabolic process -is_a: GO:0046164 {is_inferred="true"} ! alcohol catabolic process +is_a: GO:0046174 {is_inferred="true"} ! polyol catabolic process is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] @@ -47301,21 +47304,23 @@ [Term] id: GO:0052698 ! ergothioneine metabolic process +is_a: GO:0000096 {is_inferred="true"} ! sulfur amino acid metabolic process is_a: GO:0006577 {is_inferred="true"} ! amino-acid betaine metabolic process [Term] id: GO:0052699 ! ergothioneine biosynthetic process +is_a: GO:0000097 {is_inferred="true"} ! sulfur amino acid biosynthetic process is_a: GO:0006578 {is_inferred="true"} ! amino-acid betaine biosynthetic process is_a: GO:0052698 {is_inferred="true"} ! ergothioneine metabolic process [Term] id: GO:0052700 ! ergothioneine catabolic process +is_a: GO:0000098 {is_inferred="true"} ! sulfur amino acid catabolic process is_a: GO:0006579 {is_inferred="true"} ! amino-acid betaine catabolic process is_a: GO:0052698 {is_inferred="true"} ! ergothioneine metabolic process [Term] id: GO:0052704 ! ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine -is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process is_a: GO:0052805 {is_inferred="true"} ! imidazole-containing compound catabolic process is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process @@ -47340,10 +47345,6 @@ is_a: GO:1901606 {is_inferred="true"} ! alpha-amino acid catabolic process [Term] -id: GO:0052711 ! ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine -is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process - -[Term] id: GO:0052718 ! tRNA-specific adenosine-34 deaminase complex is_a: GO:1902494 {is_inferred="true"} ! catalytic complex @@ -52275,7 +52276,7 @@ [Term] id: GO:0070538 ! oleic acid binding -is_a: GO:0036041 {is_inferred="true"} ! long-chain fatty acid binding +is_a: GO:0005504 {is_inferred="true"} ! fatty acid binding [Term] id: GO:0070539 ! linoleic acid binding @@ -53231,9 +53232,6 @@ [Term] id: GO:0070968 ! pyrroloquinoline quinone binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding -is_a: GO:0048038 {is_inferred="true"} ! quinone binding -is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding -is_a: GO:1901363 {is_inferred="true"} ! heterocyclic compound binding [Term] id: GO:0070972 ! protein localization to endoplasmic reticulum @@ -56725,7 +56723,6 @@ [Term] id: GO:0072746 ! cellular response to tetracycline -is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1901326 {is_inferred="true"} ! response to tetracycline is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -56809,6 +56806,10 @@ is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound [Term] +id: GO:0072763 ! cellular response to hesperadin +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound + +[Term] id: GO:0072764 ! cellular response to reversine is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound @@ -65697,6 +65698,7 @@ [Term] id: GO:1900594 ! (+)-kotanin metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -65703,6 +65705,7 @@ [Term] id: GO:1900595 ! (+)-kotanin catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900594 {is_inferred="true"} ! (+)-kotanin metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -65710,11 +65713,13 @@ [Term] id: GO:1900596 ! (+)-kotanin biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:1900594 {is_inferred="true"} ! (+)-kotanin metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process [Term] id: GO:1900597 ! demethylkotanin metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -65721,6 +65726,7 @@ [Term] id: GO:1900598 ! demethylkotanin catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900597 {is_inferred="true"} ! demethylkotanin metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -65728,6 +65734,7 @@ [Term] id: GO:1900599 ! demethylkotanin biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:1900597 {is_inferred="true"} ! demethylkotanin metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process @@ -66814,6 +66821,7 @@ is_a: GO:0009820 {is_inferred="true"} ! alkaloid metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901615 {is_inferred="true"} ! organic hydroxy compound metabolic process is_a: GO:1901661 {is_inferred="true"} ! quinone metabolic process [Term] @@ -66822,6 +66830,7 @@ is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900794 {is_inferred="true"} ! terrequinone A metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901616 {is_inferred="true"} ! organic hydroxy compound catabolic process is_a: GO:1901662 {is_inferred="true"} ! quinone catabolic process [Term] @@ -66830,6 +66839,7 @@ is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:1900794 {is_inferred="true"} ! terrequinone A metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901617 {is_inferred="true"} ! organic hydroxy compound biosynthetic process is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] @@ -66854,24 +66864,21 @@ id: GO:1900800 ! cspyrone B1 metabolic process is_a: GO:0006082 {is_inferred="true"} ! organic acid metabolic process is_a: GO:0042180 {is_inferred="true"} ! cellular ketone metabolic process -is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process -is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process +is_a: GO:1901334 {is_inferred="true"} ! lactone metabolic process [Term] id: GO:1900801 ! cspyrone B1 catabolic process is_a: GO:0016054 {is_inferred="true"} ! organic acid catabolic process is_a: GO:0042182 {is_inferred="true"} ! ketone catabolic process -is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900800 {is_inferred="true"} ! cspyrone B1 metabolic process -is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process +is_a: GO:1901335 {is_inferred="true"} ! lactone catabolic process [Term] id: GO:1900802 ! cspyrone B1 biosynthetic process is_a: GO:0016053 {is_inferred="true"} ! organic acid biosynthetic process -is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process is_a: GO:0042181 {is_inferred="true"} ! ketone biosynthetic process is_a: GO:1900800 {is_inferred="true"} ! cspyrone B1 metabolic process -is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process +is_a: GO:1901336 {is_inferred="true"} ! lactone biosynthetic process [Term] id: GO:1900803 ! brevianamide F metabolic process @@ -66981,6 +66988,7 @@ [Term] id: GO:1900819 ! orlandin metabolic process +is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -66987,6 +66995,7 @@ [Term] id: GO:1900820 ! orlandin catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0046700 {is_inferred="true"} ! heterocycle catabolic process is_a: GO:1900819 {is_inferred="true"} ! orlandin metabolic process is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process @@ -66994,6 +67003,7 @@ [Term] id: GO:1900821 ! orlandin biosynthetic process is_a: GO:0018130 {is_inferred="true"} ! heterocycle biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:1900819 {is_inferred="true"} ! orlandin metabolic process is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process @@ -69606,7 +69616,7 @@ [Term] id: GO:1901326 ! response to tetracycline -is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0010033 {is_inferred="true"} ! response to organic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] @@ -70940,6 +70950,7 @@ id: GO:1901595 ! response to hesperadin is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:0014075 {is_inferred="true"} ! response to amine +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1901596 ! response to reversine @@ -71788,13 +71799,10 @@ [Term] id: GO:1901761 ! oxytetracycline metabolic process -is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0030638 {is_inferred="true"} ! polyketide metabolic process -is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] id: GO:1901762 ! oxytetracycline catabolic process -is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0030640 {is_inferred="true"} ! polyketide catabolic process is_a: GO:1901761 {is_inferred="true"} ! oxytetracycline metabolic process @@ -71801,7 +71809,6 @@ [Term] id: GO:1901763 ! oxytetracycline biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process -is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1901761 {is_inferred="true"} ! oxytetracycline metabolic process [Term] @@ -71834,14 +71841,18 @@ [Term] id: GO:1901770 ! daunorubicin catabolic process +is_a: GO:0019439 {is_inferred="true"} ! aromatic compound catabolic process is_a: GO:0030640 {is_inferred="true"} ! polyketide catabolic process is_a: GO:0030649 {is_inferred="true"} ! aminoglycoside antibiotic catabolic process +is_a: GO:1901361 {is_inferred="true"} ! organic cyclic compound catabolic process is_a: GO:1901662 {is_inferred="true"} ! quinone catabolic process [Term] id: GO:1901771 ! daunorubicin biosynthetic process +is_a: GO:0019438 {is_inferred="true"} ! aromatic compound biosynthetic process is_a: GO:0030639 {is_inferred="true"} ! polyketide biosynthetic process is_a: GO:0030648 {is_inferred="true"} ! aminoglycoside antibiotic biosynthetic process +is_a: GO:1901362 {is_inferred="true"} ! organic cyclic compound biosynthetic process is_a: GO:1901663 {is_inferred="true"} ! quinone biosynthetic process [Term] @@ -73714,10 +73725,12 @@ [Term] id: GO:1902133 ! (+)-secoisolariciresinol metabolic process is_a: GO:0009806 {is_inferred="true"} ! lignan metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0034311 {is_inferred="true"} ! diol metabolic process [Term] id: GO:1902134 ! (+)-secoisolariciresinol catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0034313 {is_inferred="true"} ! diol catabolic process is_a: GO:0046273 {is_inferred="true"} ! lignan catabolic process is_a: GO:1902133 {is_inferred="true"} ! (+)-secoisolariciresinol metabolic process @@ -73726,15 +73739,18 @@ id: GO:1902135 ! (+)-secoisolariciresinol biosynthetic process is_a: GO:0009807 {is_inferred="true"} ! lignan biosynthetic process is_a: GO:0034312 {is_inferred="true"} ! diol biosynthetic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1902133 {is_inferred="true"} ! (+)-secoisolariciresinol metabolic process [Term] id: GO:1902136 ! (-)-secoisolariciresinol metabolic process is_a: GO:0009806 {is_inferred="true"} ! lignan metabolic process +is_a: GO:0018958 {is_inferred="true"} ! phenol-containing compound metabolic process is_a: GO:0034311 {is_inferred="true"} ! diol metabolic process [Term] id: GO:1902137 ! (-)-secoisolariciresinol catabolic process +is_a: GO:0019336 {is_inferred="true"} ! phenol-containing compound catabolic process is_a: GO:0034313 {is_inferred="true"} ! diol catabolic process is_a: GO:0046273 {is_inferred="true"} ! lignan catabolic process is_a: GO:1902136 {is_inferred="true"} ! (-)-secoisolariciresinol metabolic process @@ -73743,6 +73759,7 @@ id: GO:1902138 ! (-)-secoisolariciresinol biosynthetic process is_a: GO:0009807 {is_inferred="true"} ! lignan biosynthetic process is_a: GO:0034312 {is_inferred="true"} ! diol biosynthetic process +is_a: GO:0046189 {is_inferred="true"} ! phenol-containing compound biosynthetic process is_a: GO:1902136 {is_inferred="true"} ! (-)-secoisolariciresinol metabolic process [Term] @@ -75523,6 +75540,7 @@ [Term] id: GO:1902520 ! response to doxorubicin +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound is_a: GO:1901654 {is_inferred="true"} ! response to ketone is_a: GO:1903416 {is_inferred="true"} ! response to glycoside ------------------------------------------------------------------------ r36294 | termgenie | 2016-10-14 07:47:00 -0700 (Fri, 14 Oct 2016) | 3 lines TermGenie commit for user: hbye reviewed by mec changes in entailments ------------------------------------------------------------------------ r36294 | termgenie | 2016-10-14 07:47:00 -0700 (Fri, 14 Oct 2016) | 3 lines TermGenie commit for user: hbye reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36294) +++ go_inferences.obo (working copy) @@ -71543,17 +71543,13 @@ [Term] id: GO:1901720 ! negative regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly -is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization +is_a: GO:1905560 {is_inferred="true"} ! negative regulation of kinetochore assembly [Term] id: GO:1901721 ! positive regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly is_a: GO:1901719 {is_inferred="true"} ! regulation of NMS complex assembly involved in kinetochore assembly -is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization +is_a: GO:1905561 {is_inferred="true"} ! positive regulation of kinetochore assembly [Term] id: GO:1901722 ! regulation of cell proliferation involved in kidney development @@ -90273,6 +90269,41 @@ is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] +id: GO:1905557 ! regulation of mitotic nuclear envelope disassembly +is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle +is_a: GO:0010549 {is_inferred="true"} ! regulation of membrane disassembly +is_a: GO:0010564 {is_inferred="true"} ! regulation of cell cycle process +is_a: GO:1903353 {is_inferred="true"} ! regulation of nucleus organization + +[Term] +id: GO:1905558 ! negative regulation of mitotic nuclear envelope disassembly +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0010948 {is_inferred="true"} ! negative regulation of cell cycle process +is_a: GO:0045930 {is_inferred="true"} ! negative regulation of mitotic cell cycle +is_a: GO:1905557 {is_inferred="true"} ! regulation of mitotic nuclear envelope disassembly + +[Term] +id: GO:1905559 ! positive regulation of mitotic nuclear envelope disassembly +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization +is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:0090068 {is_inferred="true"} ! positive regulation of cell cycle process +is_a: GO:1905557 {is_inferred="true"} ! regulation of mitotic nuclear envelope disassembly + +[Term] +id: GO:1905560 ! negative regulation of kinetochore assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:0090234 {is_inferred="true"} ! regulation of kinetochore assembly +is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization + +[Term] +id: GO:1905561 ! positive regulation of kinetochore assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:0090234 {is_inferred="true"} ! regulation of kinetochore assembly +is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36291 | paola | 2016-10-14 07:40:00 -0700 (Fri, 14 Oct 2016) | 2 lines NTR: mycelium reproductive competence #12660 - closed - added 'acquisition of mycelium reproductive competence' changes in entailments ------------------------------------------------------------------------ r36289 | paola | 2016-10-14 07:04:54 -0700 (Fri, 14 Oct 2016) | 3 lines NTR: mycelium reproductive competence #12660 - work in progress - edited GO:0010049 ‘acquisition of reproductive competence’ to refer to plants changes in entailments ------------------------------------------------------------------------ r36287 | paola | 2016-10-14 06:04:28 -0700 (Fri, 14 Oct 2016) | 3 lines GH NTR: aerial mycelium formation #12659 - work in progress - edited GO:0097736 ‘aerial mycelium formation’ changes in entailments ------------------------------------------------------------------------ r36285 | mcourtot | 2016-10-14 05:42:12 -0700 (Fri, 14 Oct 2016) | 1 line added taxon restriction aand closed https://github.com/geneontology/go-ontology/issues/12728 changes in entailments ------------------------------------------------------------------------ r36283 | paola | 2016-10-14 05:30:27 -0700 (Fri, 14 Oct 2016) | 3 lines GH NTR: aerial mycelium formation #12659 - work in progress - added GO:0097736 ‘aerial mycelium formation’ changes in entailments ------------------------------------------------------------------------ r36281 | mcourtot | 2016-10-14 05:16:35 -0700 (Fri, 14 Oct 2016) | 1 line closed https://github.com/geneontology/go-ontology/issues/12494 changes in entailments ------------------------------------------------------------------------ r36279 | mcourtot | 2016-10-14 05:07:14 -0700 (Fri, 14 Oct 2016) | 1 line added missing comment as per https://github.com/geneontology/go-ontology/issues/12728 changes in entailments ------------------------------------------------------------------------ r36277 | mcourtot | 2016-10-14 04:04:38 -0700 (Fri, 14 Oct 2016) | 1 line fixed build, added GO_0101026, nuclear membrane biogenesis involved in mitotic nuclear division changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36277) +++ go_inferences.obo (working copy) @@ -62694,6 +62694,10 @@ is_a: GO:0001935 {is_inferred="true"} ! endothelial cell proliferation [Term] +id: GO:0101024 ! nuclear membrane organization involved in mitotic nuclear division +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r36273 | mcourtot | 2016-10-14 03:02:57 -0700 (Fri, 14 Oct 2016) | 1 line removed offending synonym on CL term changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36273) +++ go_inferences.obo (working copy) @@ -62690,6 +62690,10 @@ is_a: GO:0044452 {is_inferred="true"} ! nucleolar part [Term] +id: GO:0101023 ! vascular endothelial cell proliferation +is_a: GO:0001935 {is_inferred="true"} ! endothelial cell proliferation + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r36254 | termgenie | 2016-10-13 02:38:59 -0700 (Thu, 13 Oct 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36254) +++ go_inferences.obo (working copy) @@ -90260,6 +90260,11 @@ is_a: GO:1905553 {is_inferred="true"} ! regulation of patterning of blood vessels [Term] +id: GO:1905556 ! ciliary vesicle assembly +is_a: GO:0016050 {is_inferred="true"} ! vesicle organization +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36252 | paola | 2016-10-13 02:06:04 -0700 (Thu, 13 Oct 2016) | 3 lines GH NTRs/OTRs: New cilium assembly terms and references to Reactome IDs #12572 - work in progress - added has_part links between cilium types and outer/inner dynein arms as appropriate. Added ‘immotile’ synonyms to non-motile cilia types. changes in entailments ------------------------------------------------------------------------ r36250 | termgenie | 2016-10-13 01:11:53 -0700 (Thu, 13 Oct 2016) | 4 lines TermGenie commit for user: nc reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36250) +++ go_inferences.obo (working copy) @@ -54370,8 +54370,8 @@ [Term] id: GO:0071413 ! cellular response to hydroxyisoflavone is_a: GO:0033594 {is_inferred="true"} ! response to hydroxyisoflavone -is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1901655 {is_inferred="true"} ! cellular response to ketone +is_a: GO:1905546 {is_inferred="true"} ! cellular response to phenylpropanoid [Term] id: GO:0071414 ! cellular response to methotrexate @@ -73861,9 +73861,9 @@ [Term] id: GO:1902169 ! cellular response to catechin -is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1902168 {is_inferred="true"} ! response to catechin is_a: GO:1905396 {is_inferred="true"} ! cellular response to flavonoid +is_a: GO:1905546 {is_inferred="true"} ! cellular response to phenylpropanoid [Term] id: GO:1902170 ! cellular response to reactive nitrogen species @@ -90209,6 +90209,11 @@ is_a: GO:1903813 {is_inferred="true"} ! L-methionine import into cell [Term] +id: GO:1905546 ! cellular response to phenylpropanoid +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound +is_a: GO:0080184 {is_inferred="true"} ! response to phenylpropanoid + +[Term] id: GO:1905547 ! regulation of telomeric heterochromatin assembly is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly @@ -90237,6 +90242,24 @@ is_a: GO:1905550 {is_inferred="true"} ! regulation of protein localization to endoplasmic reticulum [Term] +id: GO:1905553 ! regulation of patterning of blood vessels +is_a: GO:0045765 {is_inferred="true"} ! regulation of angiogenesis +is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium + +[Term] +id: GO:1905554 ! negative regulation of patterning of blood vessels +is_a: GO:0016525 {is_inferred="true"} ! negative regulation of angiogenesis +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium +is_a: GO:1905553 {is_inferred="true"} ! regulation of patterning of blood vessels + +[Term] +id: GO:1905555 ! positive regulation of patterning of blood vessels +is_a: GO:0045766 {is_inferred="true"} ! positive regulation of angiogenesis +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium +is_a: GO:1905553 {is_inferred="true"} ! regulation of patterning of blood vessels + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36247 | paola | 2016-10-13 00:25:24 -0700 (Thu, 13 Oct 2016) | 2 lines Trying to fix broken build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36247) +++ go_inferences.obo (working copy) @@ -51305,10 +51305,6 @@ is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] -id: GO:0070062 ! extracellular exosome -is_a: GO:1903561 {is_inferred="true"} ! extracellular vesicle - -[Term] id: GO:0070070 ! proton-transporting V-type ATPase complex assembly is_a: GO:0070071 {is_inferred="true"} ! proton-transporting two-sector ATPase complex assembly ------------------------------------------------------------------------ r36239 | davidos | 2016-10-12 08:30:42 -0700 (Wed, 12 Oct 2016) | 6 lines * New term request for DIF dechlorinase activity #12692 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36239) +++ go_inferences.obo (working copy) @@ -61126,6 +61126,7 @@ [Term] id: GO:0098837 ! postsynaptic recycling endosome +is_a: GO:0055037 {is_inferred="true"} ! recycling endosome is_a: GO:0098845 {is_inferred="true"} ! postsynaptic endosome [Term] @@ -61705,6 +61706,10 @@ is_a: GO:0044456 {is_inferred="true"} ! synapse part [Term] +id: GO:0099003 ! vesicle-mediated transport in synapse +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport + +[Term] id: GO:0099005 ! extrinsic component of postsynaptic recycling endosome membrane is_a: GO:0098999 {is_inferred="true"} ! extrinsic component of postsynaptic endosome membrane @@ -61968,6 +61973,23 @@ is_a: GO:0006996 {is_inferred="true"} ! organelle organization [Term] +id: GO:0099087 ! anterograde axonal transport of messenger ribonucleoprotein complex +is_a: GO:0008089 {is_inferred="true"} ! anterograde axonal transport +is_a: GO:0099088 {is_inferred="true"} ! axonal transport of messenger ribonucleoprotein complex + +[Term] +id: GO:0099088 ! axonal transport of messenger ribonucleoprotein complex +is_a: GO:0098930 {is_inferred="true"} ! axonal transport + +[Term] +id: GO:0099089 ! establishment of endoplasmic reticulum localization to postsynapse +is_a: GO:0051686 {is_inferred="true"} ! establishment of ER localization + +[Term] +id: GO:0099090 ! recycling endosome localization within postsynapse +is_a: GO:0032439 {is_inferred="true"} ! endosome localization + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -85418,6 +85440,7 @@ [Term] id: GO:1904564 ! Nbp35-Cfd1 ATPase complex is_a: GO:1904949 {is_inferred="true"} ! ATPase complex +is_a: GO:1990229 {is_inferred="true"} ! iron-sulfur cluster assembly complex [Term] id: GO:1904565 ! response to 1-oleoyl-sn-glycerol 3-phosphate @@ -90059,18 +90082,16 @@ [Term] id: GO:1905518 ! regulation of presynaptic active zone assembly -is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis -is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization +is_a: GO:0051963 {is_inferred="true"} ! regulation of synapse assembly [Term] id: GO:1905519 ! negative regulation of presynaptic active zone assembly -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:0051964 {is_inferred="true"} ! negative regulation of synapse assembly is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly [Term] id: GO:1905520 ! positive regulation of presynaptic active zone assembly -is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:0051965 {is_inferred="true"} ! positive regulation of synapse assembly is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly [Term] ------------------------------------------------------------------------ r36237 | mcourtot | 2016-10-12 08:21:59 -0700 (Wed, 12 Oct 2016) | 1 line removed equivalence axiom on GO:0070062 extracellular exosome changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36237) +++ go_inferences.obo (working copy) @@ -28967,7 +28967,7 @@ [Term] id: GO:0034774 ! secretory granule lumen -is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic membrane-bounded vesicle lumen +is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic vesicle lumen [Term] id: GO:0034775 ! glutathione transmembrane transport @@ -33540,6 +33540,7 @@ [Term] id: GO:0042996 ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051223 {is_inferred="true"} ! regulation of protein transport +is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport is_a: GO:0090003 {is_inferred="true"} ! regulation of establishment of protein localization to plasma membrane [Term] @@ -33560,6 +33561,7 @@ [Term] id: GO:0043001 ! Golgi to plasma membrane protein transport +is_a: GO:0006893 {is_inferred="true"} ! Golgi to plasma membrane transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0072659 {is_inferred="true"} ! protein localization to plasma membrane @@ -35956,11 +35958,13 @@ id: GO:0044861 ! protein transport into plasma membrane raft is_a: GO:0044860 {is_inferred="true"} ! protein localization to plasma membrane raft is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane [Term] id: GO:0044862 ! protein transport out of plasma membrane raft is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane +is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane is_a: GO:0099632 {is_inferred="true"} ! protein transport within plasma membrane is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery @@ -47968,7 +47972,7 @@ is_a: GO:0060194 {is_inferred="true"} ! regulation of antisense RNA transcription [Term] -id: GO:0060205 ! cytoplasmic membrane-bounded vesicle lumen +id: GO:0060205 ! cytoplasmic vesicle lumen is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen [Term] @@ -51301,6 +51305,10 @@ is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] +id: GO:0070062 ! extracellular exosome +is_a: GO:1903561 {is_inferred="true"} ! extracellular vesicle + +[Term] id: GO:0070070 ! proton-transporting V-type ATPase complex assembly is_a: GO:0070071 {is_inferred="true"} ! proton-transporting two-sector ATPase complex assembly @@ -56478,6 +56486,7 @@ [Term] id: GO:0072661 ! protein targeting to plasma membrane +is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] @@ -58350,6 +58359,7 @@ [Term] id: GO:0090119 ! vesicle-mediated cholesterol transport +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016482 {is_inferred="true"} ! cytosolic transport is_a: GO:0032367 {is_inferred="true"} ! intracellular cholesterol transport @@ -61477,6 +61487,7 @@ [Term] id: GO:0098943 ! neurotransmitter receptor transport, postsynaptic endosome to lysosome is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0061462 {is_inferred="true"} ! protein localization to lysosome is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole @@ -61594,6 +61605,7 @@ [Term] id: GO:0098968 ! neurotransmitter receptor transport postsynaptic membrane to endosome +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole @@ -79902,6 +79914,7 @@ id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane is_a: GO:0032594 {is_inferred="true"} ! protein transport within lipid bilayer is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane +is_a: GO:0098876 {is_inferred="true"} ! vesicle-mediated transport to the plasma membrane is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] @@ -86831,7 +86844,7 @@ [Term] id: GO:1904856 ! cytolytic granule lumen is_a: GO:0005775 {is_inferred="true"} ! vacuolar lumen -is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic membrane-bounded vesicle lumen +is_a: GO:0060205 {is_inferred="true"} ! cytoplasmic vesicle lumen [Term] id: GO:1904857 ! regulation of endothelial cell chemotaxis to vascular endothelial growth factor ------------------------------------------------------------------------ r36228 | termgenie | 2016-10-12 06:01:15 -0700 (Wed, 12 Oct 2016) | 2 lines TermGenie commit for user: vw reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36229) +++ go_inferences.obo (working copy) @@ -90183,6 +90183,12 @@ is_a: GO:0043235 {is_inferred="true"} ! receptor complex [Term] +id: GO:1905544 ! L-methionine import across plasma membrane +is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane +is_a: GO:1902475 {is_inferred="true"} ! L-alpha-amino acid transmembrane transport +is_a: GO:1903813 {is_inferred="true"} ! L-methionine import into cell + +[Term] id: GO:1905547 ! regulation of telomeric heterochromatin assembly is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly ------------------------------------------------------------------------ r36227 | termgenie | 2016-10-12 05:55:44 -0700 (Wed, 12 Oct 2016) | 4 lines TermGenie commit for user: rz reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36227) +++ go_inferences.obo (working copy) @@ -90197,6 +90197,20 @@ is_a: GO:1905547 {is_inferred="true"} ! regulation of telomeric heterochromatin assembly [Term] +id: GO:1905550 ! regulation of protein localization to endoplasmic reticulum +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] +id: GO:1905551 ! negative regulation of protein localization to endoplasmic reticulum +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization +is_a: GO:1905550 {is_inferred="true"} ! regulation of protein localization to endoplasmic reticulum + +[Term] +id: GO:1905552 ! positive regulation of protein localization to endoplasmic reticulum +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905550 {is_inferred="true"} ! regulation of protein localization to endoplasmic reticulum + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36223 | termgenie | 2016-10-12 05:41:52 -0700 (Wed, 12 Oct 2016) | 3 lines TermGenie commit for user: nc reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36224) +++ go_inferences.obo (working copy) @@ -90183,6 +90183,20 @@ is_a: GO:0043235 {is_inferred="true"} ! receptor complex [Term] +id: GO:1905547 ! regulation of telomeric heterochromatin assembly +is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly + +[Term] +id: GO:1905548 ! negative regulation of telomeric heterochromatin assembly +is_a: GO:0031452 {is_inferred="true"} ! negative regulation of heterochromatin assembly +is_a: GO:1905547 {is_inferred="true"} ! regulation of telomeric heterochromatin assembly + +[Term] +id: GO:1905549 ! positive regulation of telomeric heterochromatin assembly +is_a: GO:0031453 {is_inferred="true"} ! positive regulation of heterochromatin assembly +is_a: GO:1905547 {is_inferred="true"} ! regulation of telomeric heterochromatin assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36211 | mcourtot | 2016-10-11 06:52:02 -0700 (Tue, 11 Oct 2016) | 3 lines removing extra [Term] changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36221) +++ go_inferences.obo (working copy) @@ -35621,6 +35621,10 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] +id: GO:0044458 ! motile cilium assembly +is_a: GO:0042384 {is_inferred="true"} ! cilium assembly + +[Term] id: GO:0044459 ! plasma membrane part is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044464 {is_inferred="true"} ! cell part @@ -82068,10 +82072,6 @@ is_a: GO:1903884 {is_inferred="true"} ! regulation of chemokine (C-C motif) ligand 20 production [Term] -id: GO:0044458 ! motile cilium assembly -is_a: GO:0042384 {is_inferred="true"} ! cilium assembly - -[Term] id: GO:1903888 ! regulation of plant epidermal cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation @@ -90154,10 +90154,35 @@ is_a: GO:1905535 {is_inferred="true"} ! regulation of eukaryotic translation initiation factor 4F complex assembly [Term] +id: GO:1905538 ! polysome binding +is_a: GO:0043021 {is_inferred="true"} ! ribonucleoprotein complex binding + +[Term] id: GO:1905539 ! regulation of postsynapse to nucleus signaling pathway is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction [Term] +id: GO:1905540 ! interleukin-7 receptor complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0043235 {is_inferred="true"} ! receptor complex + +[Term] +id: GO:1905541 ! regulation of L-arginine import across plasma membrane +is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport + +[Term] +id: GO:1905542 ! negative regulation of L-arginine import across plasma membrane +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:1902827 {is_inferred="true"} ! negative regulation of L-arginine import into cell +is_a: GO:1905541 {is_inferred="true"} ! regulation of L-arginine import across plasma membrane + +[Term] +id: GO:1905543 ! interleukin-15 receptor complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0043235 {is_inferred="true"} ! receptor complex + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36163 | termgenie | 2016-10-07 10:10:06 -0700 (Fri, 07 Oct 2016) | 2 lines TermGenie commit for user: dos reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36163) +++ go_inferences.obo (working copy) @@ -90154,6 +90154,10 @@ is_a: GO:1905535 {is_inferred="true"} ! regulation of eukaryotic translation initiation factor 4F complex assembly [Term] +id: GO:1905539 ! regulation of postsynapse to nucleus signaling pathway +is_a: GO:0009966 {is_inferred="true"} ! regulation of signal transduction + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36159 | termgenie | 2016-10-07 06:47:22 -0700 (Fri, 07 Oct 2016) | 4 lines TermGenie commit for user: bc reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36159) +++ go_inferences.obo (working copy) @@ -90140,6 +90140,20 @@ is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane [Term] +id: GO:1905535 ! regulation of eukaryotic translation initiation factor 4F complex assembly +is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly + +[Term] +id: GO:1905536 ! negative regulation of eukaryotic translation initiation factor 4F complex assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:1905535 {is_inferred="true"} ! regulation of eukaryotic translation initiation factor 4F complex assembly + +[Term] +id: GO:1905537 ! positive regulation of eukaryotic translation initiation factor 4F complex assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:1905535 {is_inferred="true"} ! regulation of eukaryotic translation initiation factor 4F complex assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36153 | dph | 2016-10-07 05:41:36 -0700 (Fri, 07 Oct 2016) | 2 lines Tweaked the names of the laminin terms in accordance with GH12717. GH12717-closed. changes in entailments ------------------------------------------------------------------------ r36149 | dph | 2016-10-06 13:03:11 -0700 (Thu, 06 Oct 2016) | 2 lines Partially completed GH12717. Laminin synonyms. changes in entailments ------------------------------------------------------------------------ r36146 | dph | 2016-10-06 12:21:53 -0700 (Thu, 06 Oct 2016) | 2 lines Fixed bad xrefs. changes in entailments ------------------------------------------------------------------------ r36142 | dph | 2016-10-06 11:23:33 -0700 (Thu, 06 Oct 2016) | 2 lines Obsoleted GO:0061597. This was supposed to be done on June 15, 2016. The notice was sent on May 31. This is part of GH12443. changes in entailments ------------------------------------------------------------------------ r36140 | dph | 2016-10-06 08:32:12 -0700 (Thu, 06 Oct 2016) | 2 lines GH12702-closed changes in entailments ------------------------------------------------------------------------ r36128 | dph | 2016-10-06 07:02:59 -0700 (Thu, 06 Oct 2016) | 2 lines GH12715-closed changes in entailments ------------------------------------------------------------------------ r36126 | termgenie | 2016-10-06 06:21:23 -0700 (Thu, 06 Oct 2016) | 4 lines TermGenie commit for user: vw reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36126) +++ go_inferences.obo (working copy) @@ -90109,6 +90109,37 @@ is_a: GO:1905526 {is_inferred="true"} ! regulation of Golgi lumen acidification [Term] +id: GO:1905529 ! regulation of uracil import across plasma membrane +is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport + +[Term] +id: GO:1905530 ! negative regulation of uracil import across plasma membrane +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:1905529 {is_inferred="true"} ! regulation of uracil import across plasma membrane + +[Term] +id: GO:1905531 ! positive regulation of uracil import across plasma membrane +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1905529 {is_inferred="true"} ! regulation of uracil import across plasma membrane + +[Term] +id: GO:1905532 ! regulation of leucine import across plasma membrane +is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell +is_a: GO:1903789 {is_inferred="true"} ! regulation of amino acid transmembrane transport + +[Term] +id: GO:1905533 ! negative regulation of leucine import across plasma membrane +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:1903129 {is_inferred="true"} ! negative regulation of leucine import into cell +is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane + +[Term] +id: GO:1905534 ! positive regulation of leucine import across plasma membrane +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1903130 {is_inferred="true"} ! positive regulation of leucine import into cell +is_a: GO:1905532 {is_inferred="true"} ! regulation of leucine import across plasma membrane + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36122 | dph | 2016-10-06 04:26:53 -0700 (Thu, 06 Oct 2016) | 2 lines GH12713-closed changes in entailments ------------------------------------------------------------------------ r36121 | dph | 2016-10-06 04:23:08 -0700 (Thu, 06 Oct 2016) | 2 lines GH12706-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36121) +++ go_inferences.obo (working copy) @@ -4850,6 +4850,18 @@ is_a: GO:0019966 {is_inferred="true"} ! interleukin-1 binding [Term] +id: GO:0005224 ! ATP-binding and phosphorylation-dependent chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] +id: GO:0005229 ! intracellular calcium activated chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] +id: GO:0005247 ! voltage-gated chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] id: GO:0005274 ! allantoin uptake transmembrane transporter activity is_a: GO:0015563 {is_inferred="true"} ! uptake transmembrane transporter activity is_a: GO:0042887 {is_inferred="true"} ! amide transmembrane transporter activity @@ -8720,6 +8732,10 @@ is_a: GO:0007423 {is_inferred="true"} ! sensory organ development [Term] +id: GO:0008068 ! extracellular-glutamate-gated chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] id: GO:0008069 ! dorsal/ventral axis specification, ovarian follicular epithelium is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -17053,6 +17069,10 @@ is_a: GO:0005501 {is_inferred="true"} ! retinoid binding [Term] +id: GO:0016934 ! extracellular-glycine-gated chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] id: GO:0017015 ! regulation of transforming growth factor beta receptor signaling pathway is_a: GO:0090092 {is_inferred="true"} ! regulation of transmembrane receptor protein serine/threonine kinase signaling pathway is_a: GO:1903844 {is_inferred="true"} ! regulation of cellular response to transforming growth factor beta stimulus @@ -17744,6 +17764,10 @@ is_a: GO:0000166 {is_inferred="true"} ! nucleotide binding [Term] +id: GO:0019182 ! histamine-gated chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity + +[Term] id: GO:0019183 ! histamine-gated chloride channel complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -20021,12 +20045,12 @@ [Term] id: GO:0022851 ! GABA-gated chloride ion channel activity -is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity is_a: GO:0016917 {is_inferred="true"} ! GABA receptor activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity [Term] id: GO:0022852 ! glycine-gated chloride ion channel activity -is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity +is_a: GO:0061797 {is_inferred="true"} ! pH-gated chloride channel activity [Term] id: GO:0022885 ! bacteriocin transmembrane transporter activity @@ -51187,6 +51211,10 @@ is_a: GO:1902410 {is_inferred="true"} ! mitotic cytokinetic process [Term] +id: GO:0061797 ! pH-gated chloride channel activity +is_a: GO:0005254 {is_inferred="true"} ! chloride channel activity + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r36103 | tberardi | 2016-10-05 12:54:13 -0700 (Wed, 05 Oct 2016) | 1 line GH12578 spore-bearing organs should not be classified as animal organs - finally closed, added terms, cleaned up existing term names and relationships changes in entailments ------------------------------------------------------------------------ r36101 | dph | 2016-10-05 09:28:06 -0700 (Wed, 05 Oct 2016) | 2 lines GH12704-closed changes in entailments ------------------------------------------------------------------------ r36099 | dph | 2016-10-05 09:10:05 -0700 (Wed, 05 Oct 2016) | 2 lines GH12705-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36099) +++ go_inferences.obo (working copy) @@ -51183,6 +51183,10 @@ is_a: GO:0048837 {is_inferred="true"} ! sorus development [Term] +id: GO:0061796 ! membrane addition at site of mitotic cytokinesis +is_a: GO:1902410 {is_inferred="true"} ! mitotic cytokinetic process + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r36097 | dph | 2016-10-05 08:57:17 -0700 (Wed, 05 Oct 2016) | 2 lines GH12712-closed changes in entailments ------------------------------------------------------------------------ r36093 | termgenie | 2016-10-05 06:22:19 -0700 (Wed, 05 Oct 2016) | 4 lines TermGenie commit for user: dph reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 36093) +++ go_inferences.obo (working copy) @@ -13009,16 +13009,19 @@ [Term] id: GO:0010758 ! regulation of macrophage chemotaxis is_a: GO:0002688 {is_inferred="true"} ! regulation of leukocyte chemotaxis +is_a: GO:1905521 {is_inferred="true"} ! regulation of macrophage migration [Term] id: GO:0010759 ! positive regulation of macrophage chemotaxis is_a: GO:0002690 {is_inferred="true"} ! positive regulation of leukocyte chemotaxis is_a: GO:0010758 {is_inferred="true"} ! regulation of macrophage chemotaxis +is_a: GO:1905523 {is_inferred="true"} ! positive regulation of macrophage migration [Term] id: GO:0010760 ! negative regulation of macrophage chemotaxis is_a: GO:0002689 {is_inferred="true"} ! negative regulation of leukocyte chemotaxis is_a: GO:0010758 {is_inferred="true"} ! regulation of macrophage chemotaxis +is_a: GO:1905522 {is_inferred="true"} ! negative regulation of macrophage migration [Term] id: GO:0010762 ! regulation of fibroblast migration @@ -83273,20 +83276,20 @@ [Term] id: GO:1904139 ! regulation of microglial cell migration -is_a: GO:0002685 {is_inferred="true"} ! regulation of leukocyte migration is_a: GO:1903975 {is_inferred="true"} ! regulation of glial cell migration +is_a: GO:1905521 {is_inferred="true"} ! regulation of macrophage migration [Term] id: GO:1904140 ! negative regulation of microglial cell migration -is_a: GO:0002686 {is_inferred="true"} ! negative regulation of leukocyte migration is_a: GO:1903976 {is_inferred="true"} ! negative regulation of glial cell migration is_a: GO:1904139 {is_inferred="true"} ! regulation of microglial cell migration +is_a: GO:1905522 {is_inferred="true"} ! negative regulation of macrophage migration [Term] id: GO:1904141 ! positive regulation of microglial cell migration -is_a: GO:0002687 {is_inferred="true"} ! positive regulation of leukocyte migration is_a: GO:1903977 {is_inferred="true"} ! positive regulation of glial cell migration is_a: GO:1904139 {is_inferred="true"} ! regulation of microglial cell migration +is_a: GO:1905523 {is_inferred="true"} ! positive regulation of macrophage migration [Term] id: GO:1904142 ! negative regulation of carotenoid biosynthetic process @@ -90036,6 +90039,44 @@ is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly [Term] +id: GO:1905521 ! regulation of macrophage migration +is_a: GO:0002685 {is_inferred="true"} ! regulation of leukocyte migration + +[Term] +id: GO:1905522 ! negative regulation of macrophage migration +is_a: GO:0002686 {is_inferred="true"} ! negative regulation of leukocyte migration +is_a: GO:1905521 {is_inferred="true"} ! regulation of macrophage migration + +[Term] +id: GO:1905523 ! positive regulation of macrophage migration +is_a: GO:0002687 {is_inferred="true"} ! positive regulation of leukocyte migration +is_a: GO:1905521 {is_inferred="true"} ! regulation of macrophage migration + +[Term] +id: GO:1905524 ! negative regulation of protein autoubiquitination +is_a: GO:0031397 {is_inferred="true"} ! negative regulation of protein ubiquitination +is_a: GO:1902498 {is_inferred="true"} ! regulation of protein autoubiquitination + +[Term] +id: GO:1905525 ! regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron +is_a: GO:0034396 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter in response to iron +is_a: GO:1900704 {is_inferred="true"} ! regulation of siderophore biosynthetic process + +[Term] +id: GO:1905526 ! regulation of Golgi lumen acidification +is_a: GO:0032847 {is_inferred="true"} ! regulation of cellular pH reduction + +[Term] +id: GO:1905527 ! negative regulation of Golgi lumen acidification +is_a: GO:0032848 {is_inferred="true"} ! negative regulation of cellular pH reduction +is_a: GO:1905526 {is_inferred="true"} ! regulation of Golgi lumen acidification + +[Term] +id: GO:1905528 ! positive regulation of Golgi lumen acidification +is_a: GO:0032849 {is_inferred="true"} ! positive regulation of cellular pH reduction +is_a: GO:1905526 {is_inferred="true"} ! regulation of Golgi lumen acidification + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r36087 | paola | 2016-10-05 05:59:03 -0700 (Wed, 05 Oct 2016) | 3 lines GH Cellular component assembly/disassembly - add missing logical definitions #12232 - work in progress - added GO:0097735 ’DIM/DIP cell wall layer’; added logical def to ‘DIM/DIP cell wall layer assembly’ changes in entailments ------------------------------------------------------------------------ r36082 | dph | 2016-10-05 05:51:39 -0700 (Wed, 05 Oct 2016) | 2 lines dded root term for GH12710, Golgi lumen acidification. changes in entailments ------------------------------------------------------------------------ r36080 | dph | 2016-10-05 05:35:30 -0700 (Wed, 05 Oct 2016) | 2 lines Added PMID to support last change. changes in entailments ------------------------------------------------------------------------ r36022 | paola | 2016-10-05 01:23:45 -0700 (Wed, 05 Oct 2016) | 2 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - added taxon rules to 'blepharoplast' changes in entailments ------------------------------------------------------------------------ r35992 | dph | 2016-10-04 09:43:22 -0700 (Tue, 04 Oct 2016) | 2 lines Moved fibril to be an is_a child of supramolecular fiber. Made microfibril an extracellular matrix component and retained its fibril parent. Part of the plan outlined in GH125640. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35992) +++ go_inferences.obo (working copy) @@ -33856,6 +33856,10 @@ is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] +id: GO:0043205 ! fibril +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component + +[Term] id: GO:0043208 ! glycosphingolipid binding is_a: GO:0046625 {is_inferred="true"} ! sphingolipid binding is_a: GO:0051861 {is_inferred="true"} ! glycolipid binding ------------------------------------------------------------------------ r35990 | paola | 2016-10-04 08:03:50 -0700 (Tue, 04 Oct 2016) | 3 lines GH Cellular component assembly/disassembly - add missing logical definitions #12232 - work in progress - added logical def for ‘mitochondrion disassembly’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35990) +++ go_inferences.obo (working copy) @@ -665,10 +665,6 @@ is_a: GO:0031062 {is_inferred="true"} ! positive regulation of histone methylation [Term] -id: GO:0000422 ! mitophagy -is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization - -[Term] id: GO:0000427 ! plastid-encoded plastid RNA polymerase complex is_a: GO:0000428 {is_inferred="true"} ! DNA-directed RNA polymerase complex is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -51110,6 +51106,10 @@ is_a: GO:0044712 {is_inferred="true"} ! single-organism catabolic process [Term] +id: GO:0061726 ! mitochondrion disassembly +is_a: GO:0007005 {is_inferred="true"} ! mitochondrion organization + +[Term] id: GO:0061727 ! methylglyoxal catabolic process to lactate is_a: GO:0006089 {is_inferred="true"} ! lactate metabolic process ------------------------------------------------------------------------ r35983 | paola | 2016-10-04 01:04:16 -0700 (Tue, 04 Oct 2016) | 3 lines GH OTR: Align GO and Reactome on ciliary processes #12487 - work in progress - added link ‘ciliary receptor clustering involved in smoothened signaling pathway’ occurs_in ‘cilium’ changes in entailments ------------------------------------------------------------------------ r35975 | davidos | 2016-10-03 07:15:58 -0700 (Mon, 03 Oct 2016) | 1 line Fixed: MP GO:0034638 phosphatidylcholine catabolic process #12696 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35975) +++ go_inferences.obo (working copy) @@ -7288,7 +7288,7 @@ [Term] id: GO:0006653 ! 1,2-diacyl-sn-glycero-3-phosphocholine metabolic process -is_a: GO:0046470 {is_inferred="true"} ! phosphatidylcholine metabolic process +is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process [Term] id: GO:0006654 ! phosphatidic acid biosynthetic process @@ -7302,10 +7302,15 @@ [Term] id: GO:0006656 ! phosphatidylcholine biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process is_a: GO:0046470 {is_inferred="true"} ! phosphatidylcholine metabolic process +is_a: GO:0046474 {is_inferred="true"} ! glycerophospholipid biosynthetic process +is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] +id: GO:0006657 ! CDP-choline pathway +is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process + +[Term] id: GO:0006658 ! phosphatidylserine metabolic process is_a: GO:0006575 {is_inferred="true"} ! cellular modified amino acid metabolic process is_a: GO:0006650 {is_inferred="true"} ! glycerophospholipid metabolic process @@ -9015,7 +9020,7 @@ [Term] id: GO:0008525 ! phosphatidylcholine transporter activity -is_a: GO:0005215 {is_inferred="true"} ! transporter activity +is_a: GO:0005548 {is_inferred="true"} ! phospholipid transporter activity [Term] id: GO:0008526 ! phosphatidylinositol transporter activity @@ -13504,14 +13509,16 @@ [Term] id: GO:0010899 ! regulation of phosphatidylcholine catabolic process -is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:0060696 {is_inferred="true"} ! regulation of phospholipid catabolic process [Term] id: GO:0010900 ! negative regulation of phosphatidylcholine catabolic process -is_a: GO:0009895 {is_inferred="true"} ! negative regulation of catabolic process is_a: GO:0010899 {is_inferred="true"} ! regulation of phosphatidylcholine catabolic process +is_a: GO:0031330 {is_inferred="true"} ! negative regulation of cellular catabolic process +is_a: GO:0050995 {is_inferred="true"} ! negative regulation of lipid catabolic process is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:1903726 {is_inferred="true"} ! negative regulation of phospholipid metabolic process [Term] id: GO:0010901 ! regulation of very-low-density lipoprotein particle remodeling @@ -21860,6 +21867,8 @@ [Term] id: GO:0031210 ! phosphatidylcholine binding +is_a: GO:0005543 {is_inferred="true"} ! phospholipid binding +is_a: GO:0050997 {is_inferred="true"} ! quaternary ammonium group binding is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding [Term] @@ -28765,8 +28774,9 @@ [Term] id: GO:0034638 ! phosphatidylcholine catabolic process -is_a: GO:0009056 {is_inferred="true"} ! catabolic process is_a: GO:0046470 {is_inferred="true"} ! phosphatidylcholine metabolic process +is_a: GO:0046475 {is_inferred="true"} ! glycerophospholipid catabolic process +is_a: GO:1901565 {is_inferred="true"} ! organonitrogen compound catabolic process [Term] id: GO:0034639 ! L-amino acid efflux transmembrane transporter activity @@ -41026,7 +41036,9 @@ [Term] id: GO:0046470 ! phosphatidylcholine metabolic process +is_a: GO:0006650 {is_inferred="true"} ! glycerophospholipid metabolic process is_a: GO:0097164 {is_inferred="true"} ! ammonium ion metabolic process +is_a: GO:1901564 {is_inferred="true"} ! organonitrogen compound metabolic process [Term] id: GO:0046471 ! phosphatidylglycerol metabolic process @@ -52822,20 +52834,14 @@ [Term] id: GO:0070832 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-choline is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:0070833 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via CDP-N-methylethanolamine is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:0070834 ! phosphatidylcholine biosynthesis from phosphoryl-ethanolamine via N-dimethylethanolamine phosphate and CDP-N-dimethylethanolamine is_a: GO:0006656 {is_inferred="true"} ! phosphatidylcholine biosynthetic process -is_a: GO:0006793 {is_inferred="true"} ! phosphorus metabolic process -is_a: GO:0071704 {is_inferred="true"} ! organic substance metabolic process [Term] id: GO:0070836 ! caveola assembly @@ -62503,7 +62509,7 @@ [Term] id: GO:0100048 ! positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter -is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter +is_a: GO:0100032 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:2001247 {is_inferred="true"} ! positive regulation of phosphatidylcholine biosynthetic process [Term] @@ -64965,7 +64971,7 @@ [Term] id: GO:1900472 ! positive regulation of phosphatidylcholine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter +is_a: GO:1900413 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter is_a: GO:2001247 {is_inferred="true"} ! positive regulation of phosphatidylcholine biosynthetic process [Term] @@ -97346,19 +97352,19 @@ [Term] id: GO:2001245 ! regulation of phosphatidylcholine biosynthetic process -is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process is_a: GO:0051171 {is_inferred="true"} ! regulation of nitrogen compound metabolic process +is_a: GO:0071071 {is_inferred="true"} ! regulation of phospholipid biosynthetic process [Term] id: GO:2001246 ! negative regulation of phosphatidylcholine biosynthetic process -is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process is_a: GO:0051172 {is_inferred="true"} ! negative regulation of nitrogen compound metabolic process +is_a: GO:0071072 {is_inferred="true"} ! negative regulation of phospholipid biosynthetic process is_a: GO:2001245 {is_inferred="true"} ! regulation of phosphatidylcholine biosynthetic process [Term] id: GO:2001247 ! positive regulation of phosphatidylcholine biosynthetic process -is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process is_a: GO:0051173 {is_inferred="true"} ! positive regulation of nitrogen compound metabolic process +is_a: GO:0071073 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process is_a: GO:2001245 {is_inferred="true"} ! regulation of phosphatidylcholine biosynthetic process [Term] ------------------------------------------------------------------------ r35973 | davidos | 2016-10-03 06:25:31 -0700 (Mon, 03 Oct 2016) | 1 line Fixed named equivalent class issue changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35973) +++ go_inferences.obo (working copy) @@ -297,8 +297,8 @@ [Term] id: GO:0000136 ! alpha-1,6-mannosyltransferase complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0000142 ! cellular bud neck contractile ring @@ -319,7 +319,6 @@ [Term] id: GO:0000148 ! 1,3-beta-D-glucan synthase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] @@ -367,6 +366,10 @@ is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress [Term] +id: GO:0000172 ! ribonuclease MRP complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:0000173 ! inactivation of MAPK activity involved in osmosensory signaling pathway is_a: GO:0047484 {is_inferred="true"} ! regulation of response to osmotic stress is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress @@ -427,7 +430,6 @@ [Term] id: GO:0000214 ! tRNA-intron endonuclease complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex -is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:0000220 ! vacuolar proton-transporting V-type ATPase, V0 domain @@ -620,6 +622,10 @@ is_a: GO:0098852 {is_inferred="true"} ! lytic vacuole membrane [Term] +id: GO:0000333 ! telomerase catalytic core complex +is_a: GO:0042575 {is_inferred="true"} ! DNA polymerase complex + +[Term] id: GO:0000335 ! negative regulation of transposition, DNA-mediated is_a: GO:0000337 {is_inferred="true"} ! regulation of transposition, DNA-mediated is_a: GO:0010529 {is_inferred="true"} ! negative regulation of transposition @@ -949,8 +955,8 @@ [Term] id: GO:0000835 ! ER ubiquitin ligase complex is_a: GO:0000153 {is_inferred="true"} ! cytoplasmic ubiquitin ligase complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0000902 ! cell morphogenesis @@ -1229,10 +1235,6 @@ is_a: GO:0046457 {is_inferred="true"} ! prostanoid biosynthetic process [Term] -id: GO:0001518 ! voltage-gated sodium channel complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex - -[Term] id: GO:0001520 ! outer dense fiber is_a: GO:0097223 {is_inferred="true"} ! sperm part @@ -2045,7 +2047,7 @@ [Term] id: GO:0002169 ! 3-methylcrotonyl-CoA carboxylase complex, mitochondrial -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part is_a: GO:1905202 {is_inferred="true"} ! methylcrotonoyl-CoA carboxylase complex [Term] @@ -2062,7 +2064,6 @@ [Term] id: GO:0002180 ! 5-lipoxygenase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] @@ -2077,7 +2078,7 @@ [Term] id: GO:0002187 ! mitochondrial creatine kinase complex is_a: GO:0002185 {is_inferred="true"} ! creatine kinase complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part [Term] id: GO:0002189 ! ribose phosphate diphosphokinase complex @@ -5286,10 +5287,6 @@ is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] -id: GO:0005760 ! gamma DNA polymerase complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex - -[Term] id: GO:0005761 ! mitochondrial ribosome is_a: GO:0000313 {is_inferred="true"} ! organellar ribosome is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part @@ -5416,18 +5413,12 @@ [Term] id: GO:0005889 ! hydrogen:potassium-exchanging ATPase complex is_a: GO:0090533 {is_inferred="true"} ! cation-transporting ATPase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] id: GO:0005890 ! sodium:potassium-exchanging ATPase complex is_a: GO:0090533 {is_inferred="true"} ! cation-transporting ATPase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] -id: GO:0005891 ! voltage-gated calcium channel complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex - -[Term] id: GO:0005892 ! acetylcholine-gated channel complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -5486,8 +5477,8 @@ [Term] id: GO:0005942 ! phosphatidylinositol 3-kinase complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0061695 {is_inferred="true"} ! transferase complex, transferring phosphorus-containing groups -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0005945 ! 6-phosphofructokinase complex @@ -5545,8 +5536,8 @@ [Term] id: GO:0005967 ! mitochondrial pyruvate dehydrogenase complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part is_a: GO:0045254 {is_inferred="true"} ! pyruvate dehydrogenase complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] id: GO:0005968 ! Rab-protein geranylgeranyltransferase complex @@ -6655,13 +6646,11 @@ [Term] id: GO:0006334 ! nucleosome assembly -is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly is_a: GO:0065004 {is_inferred="true"} ! protein-DNA complex assembly [Term] id: GO:0006337 ! nucleosome disassembly is_a: GO:0032986 {is_inferred="true"} ! protein-DNA complex disassembly -is_a: GO:0043241 {is_inferred="true"} ! protein complex disassembly [Term] id: GO:0006342 ! chromatin silencing @@ -8735,10 +8724,6 @@ is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] -id: GO:0008076 ! voltage-gated potassium channel complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex - -[Term] id: GO:0008086 ! light-activated voltage-gated calcium channel activity is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity @@ -8839,7 +8824,6 @@ [Term] id: GO:0008250 ! oligosaccharyltransferase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] @@ -8921,6 +8905,7 @@ [Term] id: GO:0008305 ! integrin complex is_a: GO:0098636 {is_inferred="true"} ! protein complex involved in cell adhesion +is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] @@ -10234,7 +10219,6 @@ [Term] id: GO:0009324 ! D-amino-acid dehydrogenase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] @@ -10539,7 +10523,6 @@ [Term] id: GO:0009654 ! photosystem II oxygen evolving complex is_a: GO:0044436 {is_inferred="true"} ! thylakoid part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] @@ -11083,7 +11066,6 @@ [Term] id: GO:0009923 ! fatty acid elongase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] @@ -17011,7 +16993,7 @@ [Term] id: GO:0016507 ! mitochondrial fatty acid beta-oxidation multienzyme complex is_a: GO:0036125 {is_inferred="true"} ! fatty acid beta-oxidation multienzyme complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part [Term] id: GO:0016516 ! interleukin-4 receptor complex @@ -17023,6 +17005,10 @@ is_a: GO:2000181 {is_inferred="true"} ! negative regulation of blood vessel morphogenesis [Term] +id: GO:0016533 ! cyclin-dependent protein kinase 5 holoenzyme complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0016558 ! protein import into peroxisome matrix is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization @@ -17061,10 +17047,6 @@ is_a: GO:0005501 {is_inferred="true"} ! retinoid binding [Term] -id: GO:0016935 ! glycine-gated chloride channel complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex - -[Term] id: GO:0017015 ! regulation of transforming growth factor beta receptor signaling pathway is_a: GO:0090092 {is_inferred="true"} ! regulation of transmembrane receptor protein serine/threonine kinase signaling pathway is_a: GO:1903844 {is_inferred="true"} ! regulation of cellular response to transforming growth factor beta stimulus @@ -17078,6 +17060,10 @@ is_a: GO:0042277 {is_inferred="true"} ! peptide binding [Term] +id: GO:0017053 ! transcriptional repressor complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0017055 ! negative regulation of RNA polymerase II transcriptional preinitiation complex assembly is_a: GO:0045898 {is_inferred="true"} ! regulation of RNA polymerase II transcriptional preinitiation complex assembly is_a: GO:0060633 {is_inferred="true"} ! negative regulation of transcription initiation from RNA polymerase II promoter @@ -19506,6 +19492,7 @@ [Term] id: GO:0019815 ! B cell receptor complex +is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex [Term] @@ -19604,8 +19591,8 @@ [Term] id: GO:0019910 ! mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part is_a: GO:0045253 {is_inferred="true"} ! pyruvate dehydrogenase (lipoamide) phosphatase complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex [Term] id: GO:0019932 ! second-messenger-mediated signaling @@ -21506,7 +21493,6 @@ [Term] id: GO:0030964 ! NADH dehydrogenase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] @@ -21879,8 +21865,8 @@ [Term] id: GO:0031211 ! endoplasmic reticulum palmitoyltransferase complex is_a: GO:0002178 {is_inferred="true"} ! palmitoyltransferase complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0031221 ! arabinan metabolic process @@ -22390,6 +22376,10 @@ is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] +id: GO:0031429 ! box H/ACA snoRNP complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:0031437 ! regulation of mRNA cleavage is_a: GO:1903311 {is_inferred="true"} ! regulation of mRNA metabolic process @@ -22489,10 +22479,6 @@ is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] -id: GO:0031491 ! nucleosome binding -is_a: GO:0032403 {is_inferred="true"} ! protein complex binding - -[Term] id: GO:0031494 ! regulation of mating type switching is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process @@ -22522,10 +22508,6 @@ is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] -id: GO:0031502 ! dolichyl-phosphate-mannose-protein mannosyltransferase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex - -[Term] id: GO:0031504 ! peptidoglycan-based cell wall organization is_a: GO:0071555 {is_inferred="true"} ! cell wall organization @@ -23441,7 +23423,6 @@ [Term] id: GO:0032118 ! horsetail-astral microtubule organization is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0071822 {is_inferred="true"} ! protein complex subunit organization is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] @@ -24386,10 +24367,6 @@ is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] -id: GO:0032478 ! heterotetrameric decaprenyl diphosphate synthase complex -is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex - -[Term] id: GO:0032479 ! regulation of type I interferon production is_a: GO:0001817 {is_inferred="true"} ! regulation of cytokine production @@ -28286,7 +28263,7 @@ [Term] id: GO:0034245 ! mitochondrial DNA-directed RNA polymerase complex is_a: GO:0000428 {is_inferred="true"} ! DNA-directed RNA polymerase complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part [Term] id: GO:0034248 ! regulation of cellular amide metabolic process @@ -28692,6 +28669,10 @@ is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound [Term] +id: GO:0034518 ! RNA cap binding complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0034519 ! cytoplasmic RNA cap binding complex is_a: GO:0005845 {is_inferred="true"} ! mRNA cap binding complex is_a: GO:0044445 {is_inferred="true"} ! cytosolic part @@ -28874,11 +28855,10 @@ [Term] id: GO:0034708 ! methyltransferase complex -is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex +is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] id: GO:0034728 ! nucleosome organization -is_a: GO:0071822 {is_inferred="true"} ! protein complex subunit organization is_a: GO:0071824 {is_inferred="true"} ! protein-DNA complex subunit organization [Term] @@ -29150,10 +29130,6 @@ is_a: GO:0043279 {is_inferred="true"} ! response to alkaloid [Term] -id: GO:0035097 ! histone methyltransferase complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex - -[Term] id: GO:0035100 ! ecdysone binding is_a: GO:0032934 {is_inferred="true"} ! sterol binding is_a: GO:0043178 {is_inferred="true"} ! alcohol binding @@ -30610,6 +30586,10 @@ is_a: GO:0036115 {is_inferred="true"} ! fatty-acyl-CoA catabolic process [Term] +id: GO:0036125 ! fatty acid beta-oxidation multienzyme complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0036127 ! 3-sulfino-L-alanine binding is_a: GO:0043177 {is_inferred="true"} ! organic acid binding is_a: GO:0072341 {is_inferred="true"} ! modified amino acid binding @@ -30856,7 +30836,6 @@ [Term] id: GO:0036396 ! MIS complex is_a: GO:0045293 {is_inferred="true"} ! mRNA editing complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] id: GO:0036405 ! anchored component of cell outer membrane @@ -32818,10 +32797,6 @@ is_a: GO:0042714 {is_inferred="true"} ! dosage compensation complex assembly [Term] -id: GO:0042719 ! mitochondrial intermembrane space protein transporter complex -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex - -[Term] id: GO:0042720 ! mitochondrial inner membrane peptidase complex is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex @@ -32945,7 +32920,6 @@ [Term] id: GO:0042765 ! GPI-anchor transamidase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] @@ -33609,7 +33583,6 @@ [Term] id: GO:0043020 ! NADPH oxidase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] @@ -33914,6 +33887,10 @@ is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] +id: GO:0043235 ! receptor complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0043241 ! protein complex disassembly is_a: GO:0032984 {is_inferred="true"} ! macromolecular complex disassembly @@ -34018,7 +33995,7 @@ [Term] id: GO:0043294 ! mitochondrial glutamate synthase complex (NADH) is_a: GO:0031027 {is_inferred="true"} ! glutamate synthase complex (NADH) -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex +is_a: GO:0044429 {is_inferred="true"} ! mitochondrial part [Term] id: GO:0043295 ! glutathione binding @@ -34622,10 +34599,6 @@ is_a: GO:1901216 {is_inferred="true"} ! positive regulation of neuron death [Term] -id: GO:0043527 ! tRNA methyltransferase complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex - -[Term] id: GO:0043531 ! ADP binding is_a: GO:0032550 {is_inferred="true"} ! purine ribonucleoside binding is_a: GO:0032559 {is_inferred="true"} ! adenyl ribonucleotide binding @@ -34997,10 +34970,6 @@ is_a: GO:0043708 {is_inferred="true"} ! cell adhesion involved in biofilm formation [Term] -id: GO:0043853 ! methanol-CoM methyltransferase complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex - -[Term] id: GO:0043858 ! arginine:ornithine antiporter activity is_a: GO:0015181 {is_inferred="true"} ! arginine transmembrane transporter activity is_a: GO:0015297 {is_inferred="true"} ! antiporter activity @@ -35734,7 +35703,6 @@ [Term] id: GO:0044680 ! methylthiol:coenzyme M methyltransferase complex is_a: GO:0034708 {is_inferred="true"} ! methyltransferase complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] id: GO:0044681 ! sulfopyruvate decarboxylase complex @@ -35748,7 +35716,7 @@ [Term] id: GO:0044695 ! Dsc E3 ubiquitin ligase complex is_a: GO:0044422 {is_inferred="true"} ! organelle part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part [Term] id: GO:0044698 ! morphogenesis of symbiont in host cell @@ -35891,7 +35859,7 @@ [Term] id: GO:0044815 ! DNA packaging complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:0044827 ! modulation by host of viral genome replication @@ -36452,13 +36420,12 @@ [Term] id: GO:0045281 ! succinate dehydrogenase complex -is_a: GO:0098803 {is_inferred="true"} ! respiratory chain complex is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] id: GO:0045282 ! plasma membrane succinate dehydrogenase complex +is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part is_a: GO:0045281 {is_inferred="true"} ! succinate dehydrogenase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] id: GO:0045283 ! fumarate reductase complex @@ -41671,10 +41638,6 @@ is_a: GO:0044703 {is_inferred="true"} ! multi-organism reproductive process [Term] -id: GO:0046696 ! lipopolysaccharide receptor complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex - -[Term] id: GO:0046700 ! heterocycle catabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process @@ -42928,7 +42891,6 @@ id: GO:0048493 ! plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex is_a: GO:0044422 {is_inferred="true"} ! organelle part is_a: GO:0044436 {is_inferred="true"} ! thylakoid part -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] id: GO:0048494 ! chromatophore ribulose bisphosphate carboxylase complex @@ -51165,8 +51127,9 @@ [Term] id: GO:0061742 ! chaperone-mediated autophagy translocation complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044437 {is_inferred="true"} ! vacuolar part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0061762 ! CAMKK-AMPK signaling cascade @@ -51228,7 +51191,6 @@ [Term] id: GO:0070014 ! sucrase-isomaltase complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:1902687 {is_inferred="true"} ! glucosidase complex [Term] @@ -52027,7 +51989,7 @@ [Term] id: GO:0070418 ! DNA-dependent protein kinase complex -is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex +is_a: GO:1902554 {is_inferred="true"} ! serine/threonine protein kinase complex [Term] id: GO:0070419 ! nonhomologous end joining complex @@ -53262,6 +53224,14 @@ is_a: GO:0050974 {is_inferred="true"} ! detection of mechanical stimulus involved in sensory perception [Term] +id: GO:0071012 ! catalytic step 1 spliceosome +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] +id: GO:0071013 ! catalytic step 2 spliceosome +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:0071026 ! cytoplasmic RNA surveillance is_a: GO:0071025 {is_inferred="true"} ! RNA surveillance @@ -54696,10 +54666,6 @@ is_a: GO:0070486 {is_inferred="true"} ! leukocyte aggregation [Term] -id: GO:0071595 ! Nem1-Spo7 phosphatase complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex - -[Term] id: GO:0071598 ! neuronal ribonucleoprotein granule is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -56447,6 +56413,10 @@ is_a: GO:0044428 {is_inferred="true"} ! nuclear part [Term] +id: GO:0072589 ! box H/ACA scaRNP complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:0072597 ! maintenance of protein location in chloroplast is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein @@ -59815,7 +59785,7 @@ [Term] id: GO:0097106 ! postsynaptic density organization -is_a: GO:0006996 {is_inferred="true"} ! organelle organization +is_a: GO:0099084 {is_inferred="true"} ! postsynaptic specialization organization [Term] id: GO:0097107 ! postsynaptic density assembly @@ -59824,8 +59794,7 @@ [Term] id: GO:0097120 ! receptor localization to synapse -is_a: GO:0031503 {is_inferred="true"} ! protein complex localization -is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse +is_a: GO:0051179 {is_inferred="true"} ! localization [Term] id: GO:0097149 ! centralspindlin complex @@ -60343,7 +60312,6 @@ [Term] id: GO:0097658 ! Asi complex is_a: GO:0044453 {is_inferred="true"} ! nuclear membrane part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:0097708 ! intracellular vesicle @@ -60665,6 +60633,10 @@ is_a: GO:0098636 {is_inferred="true"} ! protein complex involved in cell adhesion [Term] +id: GO:0098636 ! protein complex involved in cell adhesion +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:0098637 ! protein complex involved in cell-matrix adhesion is_a: GO:0098636 {is_inferred="true"} ! protein complex involved in cell adhesion @@ -61013,7 +60985,7 @@ [Term] id: GO:0098802 ! plasma membrane receptor complex is_a: GO:0043235 {is_inferred="true"} ! receptor complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part [Term] id: GO:0098803 ! respiratory chain complex @@ -61153,6 +61125,10 @@ is_a: GO:0005774 {is_inferred="true"} ! vacuolar membrane [Term] +id: GO:0098855 ! HCN channel complex +is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex + +[Term] id: GO:0098856 ! intestinal lipid absorption is_a: GO:0006869 {is_inferred="true"} ! lipid transport is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process @@ -61509,10 +61485,7 @@ [Term] id: GO:0098953 ! receptor diffusion trapping -is_a: GO:0031503 {is_inferred="true"} ! protein complex localization is_a: GO:0051668 {is_inferred="true"} ! localization within membrane -is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane -is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] id: GO:0098954 ! presynaptic endosome membrane @@ -61598,14 +61571,10 @@ id: GO:0098970 ! postsynaptic neurotransmitter receptor diffusion trapping is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0099628 {is_inferred="true"} ! neurotransmitter receptor diffusion trapping -is_a: GO:0099645 {is_inferred="true"} ! neurotransmitter receptor localization to postsynaptic specialization membrane [Term] id: GO:0098971 ! anterograde dendritic transport of neurotransmitter receptor complex -is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0098937 {is_inferred="true"} ! anterograde dendritic transport -is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport -is_a: GO:0099640 {is_inferred="true"} ! axo-dendritic protein transport [Term] id: GO:0098972 ! anterograde dendritic transport of mitochondrion @@ -61731,7 +61700,7 @@ [Term] id: GO:0099023 ! tethring complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:0099025 ! anchored component of postsynaptic membrane @@ -61939,6 +61908,15 @@ is_a: GO:0099540 {is_inferred="true"} ! trans-synaptic signaling by neuropeptide [Term] +id: GO:0099083 ! retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission +is_a: GO:0099082 {is_inferred="true"} ! retrograde trans-synaptic signaling by neuropeptide +is_a: GO:0099551 {is_inferred="true"} ! trans-synaptic signaling by neuropeptide, modulating synaptic transmission + +[Term] +id: GO:0099084 ! postsynaptic specialization organization +is_a: GO:0006996 {is_inferred="true"} ! organelle organization + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -62069,6 +62047,7 @@ [Term] id: GO:0099551 ! trans-synaptic signaling by neuropeptide, modulating synaptic transmission +is_a: GO:0099540 {is_inferred="true"} ! trans-synaptic signaling by neuropeptide is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission [Term] @@ -62171,11 +62150,6 @@ is_a: GO:0098657 {is_inferred="true"} ! import into cell [Term] -id: GO:0099590 ! neurotransmitter receptor internalization -is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process -is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport - -[Term] id: GO:0099601 ! regulation of neurotransmitter receptor activity is_a: GO:0010469 {is_inferred="true"} ! regulation of receptor activity @@ -62256,10 +62230,6 @@ is_a: GO:0099626 {is_inferred="true"} ! voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium ion concentration [Term] -id: GO:0099637 ! neurotransmitter receptor transport -is_a: GO:0031503 {is_inferred="true"} ! protein complex localization - -[Term] id: GO:0099638 ! endosome to plasma membrane protein transport is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport @@ -62295,7 +62265,6 @@ [Term] id: GO:0099645 ! neurotransmitter receptor localization to postsynaptic specialization membrane -is_a: GO:0031503 {is_inferred="true"} ! protein complex localization is_a: GO:0099633 {is_inferred="true"} ! protein localization to postsynaptic specialization membrane [Term] @@ -75358,11 +75327,11 @@ [Term] id: GO:1902494 ! catalytic complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1902495 ! transmembrane transporter complex -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part [Term] id: GO:1902496 ! protein binding involved in negative regulation of telomere maintenance via telomerase @@ -75645,7 +75614,7 @@ [Term] id: GO:1902555 ! endoribonuclease complex -is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex +is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:1902557 ! 5'-adenylyl sulfate transmembrane transporter activity @@ -76271,7 +76240,7 @@ [Term] id: GO:1902683 ! regulation of receptor localization to synapse -is_a: GO:1902473 {is_inferred="true"} ! regulation of protein localization to synapse +is_a: GO:0032879 {is_inferred="true"} ! regulation of localization [Term] id: GO:1902684 ! negative regulation of receptor localization to synapse @@ -76280,7 +76249,7 @@ [Term] id: GO:1902685 ! positive regulation of receptor localization to synapse -is_a: GO:1902474 {is_inferred="true"} ! positive regulation of protein localization to synapse +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process is_a: GO:1902683 {is_inferred="true"} ! regulation of receptor localization to synapse [Term] @@ -76325,7 +76294,7 @@ [Term] id: GO:1902695 ! metallochaperone complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1902696 ! glycine catabolic process to isobutanol @@ -76674,7 +76643,7 @@ [Term] id: GO:1902773 ! GTPase activator complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1902774 ! late endosome to lysosome transport @@ -78254,7 +78223,6 @@ [Term] id: GO:1903095 ! ribonuclease III complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex -is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:1903096 ! protein localization to meiotic spindle midzone @@ -78263,13 +78231,11 @@ [Term] id: GO:1903097 ! regulation of CENP-A containing nucleosome assembly is_a: GO:0010847 {is_inferred="true"} ! regulation of chromatin assembly -is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly is_a: GO:0090230 {is_inferred="true"} ! regulation of centromere complex assembly is_a: GO:1900049 {is_inferred="true"} ! regulation of histone exchange [Term] id: GO:1903098 ! negative regulation of CENP-A containing nucleosome assembly -is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly is_a: GO:0045798 {is_inferred="true"} ! negative regulation of chromatin assembly or disassembly is_a: GO:1900050 {is_inferred="true"} ! negative regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly @@ -78277,7 +78243,7 @@ [Term] id: GO:1903099 ! positive regulation of CENP-A containing nucleosome assembly -is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0045799 {is_inferred="true"} ! positive regulation of chromatin assembly or disassembly is_a: GO:1900051 {is_inferred="true"} ! positive regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly @@ -78812,7 +78778,6 @@ id: GO:1903221 ! regulation of mitotic recombination involved in replication fork processing is_a: GO:0000019 {is_inferred="true"} ! regulation of mitotic recombination is_a: GO:0090329 {is_inferred="true"} ! regulation of DNA-dependent DNA replication -is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus [Term] id: GO:1903222 ! quinolinic acid transmembrane transport @@ -79043,7 +79008,7 @@ [Term] id: GO:1903269 ! ornithine carbamoyltransferase inhibitor complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1903270 ! regulation of cytoplasmic translational elongation through polyproline stretches @@ -80193,11 +80158,11 @@ [Term] id: GO:1903502 ! translation repressor complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1903503 ! ATPase inhibitor complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1903504 ! regulation of mitotic spindle checkpoint @@ -81963,7 +81928,7 @@ [Term] id: GO:1903865 ! sigma factor antagonist complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1903866 ! palisade mesophyll development @@ -83049,7 +83014,7 @@ [Term] id: GO:1904090 ! peptidase inhibitor complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1904091 ! peptidyl carrier protein activity involved in nonribosomal peptide biosynthesis @@ -86379,11 +86344,11 @@ [Term] id: GO:1904763 ! chaperone-mediated autophagy translocation complex assembly -is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly +is_a: GO:0065003 {is_inferred="true"} ! macromolecular complex assembly [Term] id: GO:1904764 ! chaperone-mediated autophagy translocation complex disassembly -is_a: GO:0043241 {is_inferred="true"} ! protein complex disassembly +is_a: GO:0032984 {is_inferred="true"} ! macromolecular complex disassembly [Term] id: GO:1904765 ! positive regulation of transcription from RNA polymerase II promoter in response to maltose @@ -86661,7 +86626,7 @@ [Term] id: GO:1904824 ! anaphase-promoting complex assembly -is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly +is_a: GO:0065003 {is_inferred="true"} ! macromolecular complex assembly [Term] id: GO:1904825 ! protein localization to microtubule plus-end @@ -89264,7 +89229,7 @@ [Term] id: GO:1905354 ! exoribonuclease complex -is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] id: GO:1905355 ! spine apparatus assembly @@ -90168,7 +90133,6 @@ [Term] id: GO:1990077 ! primosome complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex is_a: GO:0044427 {is_inferred="true"} ! chromosomal part [Term] @@ -90185,7 +90149,7 @@ [Term] id: GO:1990104 ! DNA bending complex -is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1990109 ! rejection of pollen from other species @@ -90283,7 +90247,7 @@ [Term] id: GO:1990203 ! MdtBC Complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part [Term] id: GO:1990204 ! oxidoreductase complex @@ -90297,7 +90261,7 @@ [Term] id: GO:1990207 ! EmrE multidrug transporter complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part [Term] id: GO:1990215 ! negative regulation by symbiont of host intracellular transport @@ -90314,6 +90278,7 @@ [Term] id: GO:1990229 ! iron-sulfur cluster assembly complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] @@ -90351,9 +90316,13 @@ [Term] id: GO:1990246 ! uniplex complex -is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex +is_a: GO:0044455 {is_inferred="true"} ! mitochondrial membrane part [Term] +id: GO:1990249 ! nucleotide-excision repair, DNA damage recognition complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:1990252 ! Syp1 complex is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part @@ -90424,10 +90393,9 @@ [Term] id: GO:1990332 ! Ire1 complex +is_a: GO:0044425 {is_inferred="true"} ! membrane part is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex -is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:1990333 ! mitotic checkpoint complex, CDC20-MAD2 subcomplex @@ -90447,6 +90415,10 @@ is_a: GO:1902410 {is_inferred="true"} ! mitotic cytokinetic process [Term] +id: GO:1990351 ! transporter complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:1990361 ! PKM2 pyruvate kinase complex is_a: GO:1902912 {is_inferred="true"} ! pyruvate kinase complex @@ -90458,8 +90430,13 @@ [Term] id: GO:1990389 ! CUE1-UBC7 ubiquitin-conjugating enzyme complex is_a: GO:0031371 {is_inferred="true"} ! ubiquitin conjugating enzyme complex +is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:1990391 ! DNA repair complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:1990392 ! EFF-1 complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -90469,7 +90446,7 @@ [Term] id: GO:1990398 ! Cus cation efflux complex -is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex +is_a: GO:0044459 {is_inferred="true"} ! plasma membrane part [Term] id: GO:1990406 ! CGRP receptor complex @@ -90476,6 +90453,10 @@ is_a: GO:1903439 {is_inferred="true"} ! calcitonin family receptor complex [Term] +id: GO:1990415 ! Pex17p-Pex14p docking complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:1990417 ! snoRNA release from pre-rRNA is_a: GO:0016074 {is_inferred="true"} ! snoRNA metabolic process @@ -90884,6 +90865,10 @@ is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization [Term] +id: GO:1990779 ! glycoprotein Ib-IX-V complex +is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex + +[Term] id: GO:1990780 ! cytoplasmic side of dendritic spine plasma membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part is_a: GO:0044463 {is_inferred="true"} ! cell projection part @@ -90970,8 +90955,8 @@ [Term] id: GO:1990862 ! nuclear membrane complex Bqt3-Bqt4 +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex is_a: GO:0044453 {is_inferred="true"} ! nuclear membrane part -is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] id: GO:1990872 ! negative regulation of sterol import by negative regulation of transcription from RNA polymerase II promoter @@ -91022,6 +91007,10 @@ is_a: GO:1990139 {is_inferred="true"} ! protein localization to nuclear periphery [Term] +id: GO:1990923 ! PET complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex + +[Term] id: GO:1990925 ! mitochondrial iron ion transmembrane transport is_a: GO:0034755 {is_inferred="true"} ! iron ion transmembrane transport is_a: GO:0048250 {is_inferred="true"} ! mitochondrial iron ion transport ------------------------------------------------------------------------ r35965 | paola | 2016-10-03 05:42:25 -0700 (Mon, 03 Oct 2016) | 3 lines GH Exosome assembly and secretion #12386 - closed - added GO:0097734 ’extracellular exosome biogenesis’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35970) +++ go_inferences.obo (working copy) @@ -80379,6 +80379,7 @@ [Term] id: GO:1903541 ! regulation of exosomal secretion is_a: GO:0017157 {is_inferred="true"} ! regulation of exocytosis +is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis [Term] id: GO:1903542 ! negative regulation of exosomal secretion @@ -80387,6 +80388,7 @@ [Term] id: GO:1903543 ! positive regulation of exosomal secretion +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0045921 {is_inferred="true"} ! positive regulation of exocytosis is_a: GO:1903541 {is_inferred="true"} ! regulation of exosomal secretion ------------------------------------------------------------------------ r35961 | termgenie | 2016-10-03 01:51:09 -0700 (Mon, 03 Oct 2016) | 4 lines TermGenie commit for user: rl reviewed by dos changes in entailments ------------------------------------------------------------------------ r35961 | termgenie | 2016-10-03 01:51:09 -0700 (Mon, 03 Oct 2016) | 4 lines TermGenie commit for user: rl reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35961) +++ go_inferences.obo (working copy) @@ -42511,7 +42511,7 @@ [Term] id: GO:0048246 ! macrophage chemotaxis -is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration +is_a: GO:1905517 {is_inferred="true"} ! macrophage migration [Term] id: GO:0048250 ! mitochondrial iron ion transport @@ -54585,7 +54585,7 @@ [Term] id: GO:0071539 ! protein localization to centrosome -is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:0071543 ! diphosphoinositol polyphosphate metabolic process @@ -55350,7 +55350,7 @@ [Term] id: GO:0071988 ! protein localization to spindle pole body -is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:0071989 ! establishment of protein localization to spindle pole body @@ -75135,11 +75135,13 @@ [Term] id: GO:1902440 ! protein localization to mitotic spindle pole body is_a: GO:1902480 {is_inferred="true"} ! protein localization to mitotic spindle +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:1902441 ! protein localization to meiotic spindle pole body is_a: GO:0022414 {is_inferred="true"} ! reproductive process is_a: GO:1905359 {is_inferred="true"} ! protein localization to meiotic spindle +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:1902442 ! regulation of ripoptosome assembly involved in necroptotic process @@ -83218,7 +83220,7 @@ [Term] id: GO:1904124 ! microglial cell migration is_a: GO:0008347 {is_inferred="true"} ! glial cell migration -is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration +is_a: GO:1905517 {is_inferred="true"} ! macrophage migration [Term] id: GO:1904125 ! convergent extension involved in rhombomere morphogenesis @@ -86356,8 +86358,8 @@ [Term] id: GO:1904759 ! protein localization to equatorial microtubule organizing center -is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton is_a: GO:0072741 {is_inferred="true"} ! protein localization to cell division site +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center [Term] id: GO:1904760 ! regulation of myofibroblast differentiation @@ -89993,6 +89995,14 @@ is_a: GO:1905482 {is_inferred="true"} ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint [Term] +id: GO:1905508 ! protein localization to microtubule organizing center +is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton + +[Term] +id: GO:1905509 ! protein localization to interphase microtubule organizing center +is_a: GO:1905508 {is_inferred="true"} ! protein localization to microtubule organizing center + +[Term] id: GO:1905510 ! negative regulation of myosin II filament assembly is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly is_a: GO:0043520 {is_inferred="true"} ! regulation of myosin II filament assembly @@ -90005,6 +90015,20 @@ is_a: GO:1904901 {is_inferred="true"} ! positive regulation of myosin II filament organization [Term] +id: GO:1905512 ! regulation of short-term synaptic potentiation +is_a: GO:0048167 {is_inferred="true"} ! regulation of synaptic plasticity + +[Term] +id: GO:1905513 ! negative regulation of short-term synaptic potentiation +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905512 {is_inferred="true"} ! regulation of short-term synaptic potentiation + +[Term] +id: GO:1905514 ! positive regulation of short-term synaptic potentiation +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905512 {is_inferred="true"} ! regulation of short-term synaptic potentiation + +[Term] id: GO:1905515 ! non-motile cilium assembly is_a: GO:0042384 {is_inferred="true"} ! cilium assembly @@ -90015,6 +90039,26 @@ is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] +id: GO:1905517 ! macrophage migration +is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration + +[Term] +id: GO:1905518 ! regulation of presynaptic active zone assembly +is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:0050807 {is_inferred="true"} ! regulation of synapse organization + +[Term] +id: GO:1905519 ! negative regulation of presynaptic active zone assembly +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly + +[Term] +id: GO:1905520 ! positive regulation of presynaptic active zone assembly +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:1905518 {is_inferred="true"} ! regulation of presynaptic active zone assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35950 | dph | 2016-10-02 11:22:01 -0700 (Sun, 02 Oct 2016) | 2 lines Removed bad axioms from nanoparticle terms, GO:1990268 and GO:1990267. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35950) +++ go_inferences.obo (working copy) @@ -11281,7 +11281,6 @@ [Term] id: GO:0010039 ! response to iron ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0010040 ! response to iron(II) ion @@ -11294,12 +11293,10 @@ [Term] id: GO:0010042 ! response to manganese ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0010043 ! response to zinc ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0010044 ! response to aluminum ion @@ -11749,7 +11746,6 @@ [Term] id: GO:0010272 ! response to silver ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0010273 ! detoxification of copper ion @@ -27401,7 +27397,6 @@ id: GO:0033590 ! response to cobalamin is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0033591 ! response to L-ascorbic acid @@ -41658,17 +41653,14 @@ id: GO:0046687 ! response to chromate is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0046688 ! response to copper ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0046689 ! response to mercury ion is_a: GO:0010038 {is_inferred="true"} ! response to metal ion -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0046690 ! response to tellurium ion @@ -46280,7 +46272,6 @@ [Term] id: GO:0051597 ! response to methylmercury is_a: GO:0010033 {is_inferred="true"} ! response to organic substance -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:0051600 ! regulation of endocytosis by exocyst localization @@ -56605,7 +56596,7 @@ [Term] id: GO:0072718 ! response to cisplatin -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle +is_a: GO:0042221 {is_inferred="true"} ! response to chemical [Term] id: GO:0072719 ! cellular response to cisplatin @@ -60097,7 +60088,7 @@ [Term] id: GO:0097328 ! response to carboplatin -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle +is_a: GO:0042221 {is_inferred="true"} ! response to chemical [Term] id: GO:0097330 ! response to 5-fluoro-2'-deoxyuridine @@ -75135,7 +75126,6 @@ id: GO:1902438 ! response to vanadate(3-) is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound -is_a: GO:1990267 {is_inferred="true"} ! response to transition metal nanoparticle [Term] id: GO:1902439 ! cellular response to vanadate(3-) @@ -84156,7 +84146,6 @@ [Term] id: GO:1904311 ! response to gold(3+) is_a: GO:0010035 {is_inferred="true"} ! response to inorganic substance -is_a: GO:1990268 {is_inferred="true"} ! response to gold nanoparticle [Term] id: GO:1904312 ! cellular response to gold(3+) ------------------------------------------------------------------------ r35948 | dph | 2016-10-02 10:48:44 -0700 (Sun, 02 Oct 2016) | 2 lines Made the definition of mitotic nuclear divsion more specific to the mitotic cell cycle. GH12698-closed changes in entailments ------------------------------------------------------------------------ r35927 | hjd | 2016-09-30 13:18:46 -0700 (Fri, 30 Sep 2016) | 2 lines added about 70 plant enzyme activities changes in entailments ------------------------------------------------------------------------ r35925 | cjm | 2016-09-30 10:10:33 -0700 (Fri, 30 Sep 2016) | 1 line link between blepharoplast and plant cell changes in entailments ------------------------------------------------------------------------ r35923 | cjm | 2016-09-30 09:59:19 -0700 (Fri, 30 Sep 2016) | 1 line removing trailing dash for EC xrefs changes in entailments ------------------------------------------------------------------------ r35921 | paola | 2016-09-30 08:59:38 -0700 (Fri, 30 Sep 2016) | 2 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - cleaning up changes in entailments ------------------------------------------------------------------------ r35919 | paola | 2016-09-30 08:32:10 -0700 (Fri, 30 Sep 2016) | 2 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - merged 'primary cilium' into 'cilium' changes in entailments ------------------------------------------------------------------------ r35917 | paola | 2016-09-30 08:04:32 -0700 (Fri, 30 Sep 2016) | 3 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - fixed synonym scopes for ‘regulation of motile primary cilium assembly’ terms changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35917) +++ go_inferences.obo (working copy) @@ -89981,18 +89981,18 @@ is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] -id: GO:1905503 ! regulation of motile primary cilium assembly +id: GO:1905503 ! regulation of motile cilium assembly is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly [Term] -id: GO:1905504 ! negative regulation of motile primary cilium assembly +id: GO:1905504 ! negative regulation of motile cilium assembly is_a: GO:1902018 {is_inferred="true"} ! negative regulation of cilium assembly -is_a: GO:1905503 {is_inferred="true"} ! regulation of motile primary cilium assembly +is_a: GO:1905503 {is_inferred="true"} ! regulation of motile cilium assembly [Term] -id: GO:1905505 ! positive regulation of motile primary cilium assembly +id: GO:1905505 ! positive regulation of motile cilium assembly is_a: GO:0045724 {is_inferred="true"} ! positive regulation of cilium assembly -is_a: GO:1905503 {is_inferred="true"} ! regulation of motile primary cilium assembly +is_a: GO:1905503 {is_inferred="true"} ! regulation of motile cilium assembly [Term] id: GO:1905506 ! gerontoplast stroma ------------------------------------------------------------------------ r35914 | paola | 2016-09-30 07:47:08 -0700 (Fri, 30 Sep 2016) | 2 lines GH OTR: add logical definition for 'regulation of fertilization' #12695 - closed - added logical def to 'regulation of fertilization' changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35914) +++ go_inferences.obo (working copy) @@ -33584,10 +33584,9 @@ [Term] id: GO:0043012 ! regulation of fusion of sperm to egg plasma membrane -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization [Term] id: GO:0043013 ! negative regulation of fusion of sperm to egg plasma membrane @@ -47725,8 +47724,7 @@ [Term] id: GO:0060046 ! regulation of acrosome reaction -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization [Term] id: GO:0060049 ! regulation of protein glycosylation @@ -48673,6 +48671,7 @@ [Term] id: GO:0060467 ! negative regulation of fertilization is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -90023,6 +90022,7 @@ [Term] id: GO:1905516 ! positive regulation of fertilization is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -92888,9 +92888,8 @@ [Term] id: GO:2000359 ! regulation of binding of sperm to zona pellucida -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process -is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process +is_a: GO:0080154 {is_inferred="true"} ! regulation of fertilization [Term] id: GO:2000360 ! negative regulation of binding of sperm to zona pellucida ------------------------------------------------------------------------ r35912 | termgenie | 2016-09-30 07:35:40 -0700 (Fri, 30 Sep 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35912) +++ go_inferences.obo (working copy) @@ -48696,8 +48696,8 @@ [Term] id: GO:0060472 ! positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0050867 {is_inferred="true"} ! positive regulation of cell activation +is_a: GO:1905516 {is_inferred="true"} ! positive regulation of fertilization [Term] id: GO:0060474 ! positive regulation of flagellated sperm motility involved in capacitation @@ -90021,6 +90021,11 @@ is_a: GO:0042384 {is_inferred="true"} ! cilium assembly [Term] +id: GO:1905516 ! positive regulation of fertilization +is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -92802,8 +92807,8 @@ [Term] id: GO:2000344 ! positive regulation of acrosome reaction -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0060046 {is_inferred="true"} ! regulation of acrosome reaction +is_a: GO:1905516 {is_inferred="true"} ! positive regulation of fertilization [Term] id: GO:2000345 ! regulation of hepatocyte proliferation ------------------------------------------------------------------------ r35910 | paola | 2016-09-30 07:09:05 -0700 (Fri, 30 Sep 2016) | 2 lines Fixing build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35910) +++ go_inferences.obo (working copy) @@ -60260,7 +60260,7 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] -id: GO:0097500 ! receptor localization to nonmotile primary cilium +id: GO:0097500 ! receptor localization to non-motile cilium is_a: GO:1903441 {is_inferred="true"} ! protein localization to ciliary membrane [Term] @@ -61030,7 +61030,7 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] -id: GO:0098804 ! nonmotile primary cilium membrane +id: GO:0098804 ! non-motile cilium membrane is_a: GO:0060170 {is_inferred="true"} ! ciliary membrane [Term] @@ -80412,7 +80412,7 @@ [Term] id: GO:1903546 ! protein localization to photoreceptor outer segment -is_a: GO:0061512 {is_inferred="true"} ! protein localization to cilium +is_a: GO:0097499 {is_inferred="true"} ! protein localization to non-motile cilium [Term] id: GO:1903547 ! regulation of growth hormone activity @@ -80797,6 +80797,7 @@ [Term] id: GO:1903621 ! protein localization to photoreceptor connecting cilium +is_a: GO:0097499 {is_inferred="true"} ! protein localization to non-motile cilium is_a: GO:1904491 {is_inferred="true"} ! protein localization to ciliary transition zone [Term] ------------------------------------------------------------------------ r35906 | paola | 2016-09-30 06:04:07 -0700 (Fri, 30 Sep 2016) | 2 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - merged ‘nonmotile primary cilium’ terms into ‘non-motile cilium’ ones changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35906) +++ go_inferences.obo (working copy) @@ -77072,18 +77072,18 @@ is_a: GO:1902852 {is_inferred="true"} ! regulation of nuclear migration during mitotic telophase [Term] -id: GO:1902855 ! regulation of nonmotile primary cilium assembly +id: GO:1902855 ! regulation of non-motile cilium assembly is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly [Term] -id: GO:1902856 ! negative regulation of nonmotile primary cilium assembly +id: GO:1902856 ! negative regulation of non-motile cilium assembly is_a: GO:1902018 {is_inferred="true"} ! negative regulation of cilium assembly -is_a: GO:1902855 {is_inferred="true"} ! regulation of nonmotile primary cilium assembly +is_a: GO:1902855 {is_inferred="true"} ! regulation of non-motile cilium assembly [Term] -id: GO:1902857 ! positive regulation of nonmotile primary cilium assembly +id: GO:1902857 ! positive regulation of non-motile cilium assembly is_a: GO:0045724 {is_inferred="true"} ! positive regulation of cilium assembly -is_a: GO:1902855 {is_inferred="true"} ! regulation of nonmotile primary cilium assembly +is_a: GO:1902855 {is_inferred="true"} ! regulation of non-motile cilium assembly [Term] id: GO:1902858 ! propionyl-CoA metabolic process ------------------------------------------------------------------------ r35900 | termgenie | 2016-09-30 04:58:26 -0700 (Fri, 30 Sep 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35900) +++ go_inferences.obo (working copy) @@ -90016,6 +90016,10 @@ is_a: GO:1904901 {is_inferred="true"} ! positive regulation of myosin II filament organization [Term] +id: GO:1905515 ! non-motile cilium assembly +is_a: GO:0042384 {is_inferred="true"} ! cilium assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35898 | paola | 2016-09-30 03:57:21 -0700 (Fri, 30 Sep 2016) | 2 lines Fixing build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35898) +++ go_inferences.obo (working copy) @@ -82064,7 +82064,7 @@ is_a: GO:1903884 {is_inferred="true"} ! regulation of chemokine (C-C motif) ligand 20 production [Term] -id: GO:1903887 ! motile primary cilium assembly +id: GO:1903887 ! motile cilium assembly is_a: GO:0042384 {is_inferred="true"} ! cilium assembly [Term] ------------------------------------------------------------------------ r35895 | paola | 2016-09-30 03:14:28 -0700 (Fri, 30 Sep 2016) | 2 lines Fixing build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35895) +++ go_inferences.obo (working copy) @@ -24200,6 +24200,10 @@ is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport [Term] +id: GO:0032391 ! photoreceptor connecting cilium +is_a: GO:0097458 {is_inferred="true"} ! neuron part + +[Term] id: GO:0032400 ! melanosome localization is_a: GO:0051875 {is_inferred="true"} ! pigment granule localization @@ -30168,10 +30172,6 @@ is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process [Term] -id: GO:0035845 ! photoreceptor cell outer segment organization -is_a: GO:0044782 {is_inferred="true"} ! cilium organization - -[Term] id: GO:0035846 ! oviduct epithelium development is_a: GO:0048608 {is_inferred="true"} ! reproductive structure development @@ -60360,6 +60360,10 @@ is_a: GO:0044424 {is_inferred="true"} ! intracellular part [Term] +id: GO:0097733 ! photoreceptor cell cilium +is_a: GO:0097458 {is_inferred="true"} ! neuron part + +[Term] id: GO:0098003 ! viral tail assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly @@ -80408,7 +80412,7 @@ [Term] id: GO:1903546 ! protein localization to photoreceptor outer segment -is_a: GO:0097499 {is_inferred="true"} ! protein localization to nonmotile primary cilium +is_a: GO:0061512 {is_inferred="true"} ! protein localization to cilium [Term] id: GO:1903547 ! regulation of growth hormone activity @@ -80793,7 +80797,7 @@ [Term] id: GO:1903621 ! protein localization to photoreceptor connecting cilium -is_a: GO:0097499 {is_inferred="true"} ! protein localization to nonmotile primary cilium +is_a: GO:1904491 {is_inferred="true"} ! protein localization to ciliary transition zone [Term] id: GO:1903622 ! regulation of RNA polymerase III activity ------------------------------------------------------------------------ r35881 | termgenie | 2016-09-29 06:40:31 -0700 (Thu, 29 Sep 2016) | 3 lines TermGenie commit for user: pf reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35881) +++ go_inferences.obo (working copy) @@ -89973,10 +89973,45 @@ is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly [Term] +id: GO:1905502 ! acetyl-CoA binding +is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding + +[Term] +id: GO:1905503 ! regulation of motile primary cilium assembly +is_a: GO:1902017 {is_inferred="true"} ! regulation of cilium assembly + +[Term] +id: GO:1905504 ! negative regulation of motile primary cilium assembly +is_a: GO:1902018 {is_inferred="true"} ! negative regulation of cilium assembly +is_a: GO:1905503 {is_inferred="true"} ! regulation of motile primary cilium assembly + +[Term] +id: GO:1905505 ! positive regulation of motile primary cilium assembly +is_a: GO:0045724 {is_inferred="true"} ! positive regulation of cilium assembly +is_a: GO:1905503 {is_inferred="true"} ! regulation of motile primary cilium assembly + +[Term] id: GO:1905506 ! gerontoplast stroma is_a: GO:0009532 {is_inferred="true"} ! plastid stroma [Term] +id: GO:1905507 ! cytoplasmic sequestering of protein involved in mitotic G2 DNA damage checkpoint +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process +is_a: GO:1905482 {is_inferred="true"} ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint + +[Term] +id: GO:1905510 ! negative regulation of myosin II filament assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:0043520 {is_inferred="true"} ! regulation of myosin II filament assembly +is_a: GO:1904900 {is_inferred="true"} ! negative regulation of myosin II filament organization + +[Term] +id: GO:1905511 ! positive regulation of myosin II filament assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:0043520 {is_inferred="true"} ! regulation of myosin II filament assembly +is_a: GO:1904901 {is_inferred="true"} ! positive regulation of myosin II filament organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35876 | paola | 2016-09-29 06:29:52 -0700 (Thu, 29 Sep 2016) | 3 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - moved ‘kinocilium’ from is_a ‘nonmotile primary cilium’ to is_a ‘9+2 non-motile cilium’. changes in entailments ------------------------------------------------------------------------ r35873 | paola | 2016-09-29 06:19:23 -0700 (Thu, 29 Sep 2016) | 3 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - moved ‘ciliary transition zone’ from part_of ‘primary cilium’ to part_of ‘cilium’, which is more correct changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35874) +++ go_inferences.obo (working copy) @@ -85067,7 +85067,7 @@ [Term] id: GO:1904491 ! protein localization to ciliary transition zone -is_a: GO:0097499 {is_inferred="true"} ! protein localization to nonmotile primary cilium +is_a: GO:0061512 {is_inferred="true"} ! protein localization to cilium [Term] id: GO:1904492 ! Ac-Asp-Glu binding ------------------------------------------------------------------------ r35872 | paola | 2016-09-29 06:11:32 -0700 (Thu, 29 Sep 2016) | 2 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - added GO:0097730 non-motile cilium, GO:0097731 9+0 non-motile cilium, GO:0097732 9+2 non-motile cilium changes in entailments ------------------------------------------------------------------------ r35870 | paola | 2016-09-29 04:47:38 -0700 (Thu, 29 Sep 2016) | 2 lines GH 'cilium morphogenesis' and 'cilium assembly' #12236 - work in progress - added def. comment to ‘cilium morphogenesis’ terms. changes in entailments ------------------------------------------------------------------------ r35859 | tberardi | 2016-09-27 13:45:35 -0700 (Tue, 27 Sep 2016) | 1 line added missing part-of relationship for trichome papilla formation and some new synonyms for GO:0052033 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35859) +++ go_inferences.obo (working copy) @@ -89969,6 +89969,7 @@ [Term] id: GO:1905499 ! trichome papilla formation +is_a: GO:0010927 {is_inferred="true"} ! cellular component assembly involved in morphogenesis is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly [Term] ------------------------------------------------------------------------ r35857 | termgenie | 2016-09-27 13:05:17 -0700 (Tue, 27 Sep 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35857) +++ go_inferences.obo (working copy) @@ -89972,6 +89972,10 @@ is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly [Term] +id: GO:1905506 ! gerontoplast stroma +is_a: GO:0009532 {is_inferred="true"} ! plastid stroma + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35855 | paola | 2016-09-27 07:51:11 -0700 (Tue, 27 Sep 2016) | 3 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - added has_part links to ‘9+0 motile cilium’ and ‘9+2 motile cilium’. changes in entailments ------------------------------------------------------------------------ r35853 | paola | 2016-09-27 07:33:52 -0700 (Tue, 27 Sep 2016) | 3 lines GH NTRs/OTRs: types of cilia #12462 - work in progress - added ‘9+0 motile cilium’ and ‘9+2 motile cilium’; placed ‘sperm flagellum’, Giardia and dinoflagellate flagella terms under the latter. changes in entailments ------------------------------------------------------------------------ r35851 | paola | 2016-09-27 05:47:06 -0700 (Tue, 27 Sep 2016) | 3 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - added taxon constraint to ‘deuterosome’. changes in entailments ------------------------------------------------------------------------ r35842 | termgenie | 2016-09-26 17:34:42 -0700 (Mon, 26 Sep 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35842) +++ go_inferences.obo (working copy) @@ -89968,6 +89968,10 @@ is_a: GO:1905496 {is_inferred="true"} ! regulation of triplex DNA binding [Term] +id: GO:1905499 ! trichome papilla formation +is_a: GO:0030031 {is_inferred="true"} ! cell projection assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35840 | tberardi | 2016-09-26 12:53:38 -0700 (Mon, 26 Sep 2016) | 1 line created new term for cc trichome papilla changes in entailments ------------------------------------------------------------------------ r35835 | termgenie | 2016-09-26 09:05:04 -0700 (Mon, 26 Sep 2016) | 4 lines TermGenie commit for user: ans reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35835) +++ go_inferences.obo (working copy) @@ -89940,6 +89940,34 @@ is_a: GO:2000172 {is_inferred="true"} ! regulation of branching morphogenesis of a nerve [Term] +id: GO:1905493 ! regulation of G-quadruplex DNA binding +is_a: GO:0051101 {is_inferred="true"} ! regulation of DNA binding + +[Term] +id: GO:1905494 ! negative regulation of G-quadruplex DNA binding +is_a: GO:0043392 {is_inferred="true"} ! negative regulation of DNA binding +is_a: GO:1905493 {is_inferred="true"} ! regulation of G-quadruplex DNA binding + +[Term] +id: GO:1905495 ! positive regulation of G-quadruplex DNA binding +is_a: GO:0043388 {is_inferred="true"} ! positive regulation of DNA binding +is_a: GO:1905493 {is_inferred="true"} ! regulation of G-quadruplex DNA binding + +[Term] +id: GO:1905496 ! regulation of triplex DNA binding +is_a: GO:0051101 {is_inferred="true"} ! regulation of DNA binding + +[Term] +id: GO:1905497 ! negative regulation of triplex DNA binding +is_a: GO:0043392 {is_inferred="true"} ! negative regulation of DNA binding +is_a: GO:1905496 {is_inferred="true"} ! regulation of triplex DNA binding + +[Term] +id: GO:1905498 ! positive regulation of triplex DNA binding +is_a: GO:0043388 {is_inferred="true"} ! positive regulation of DNA binding +is_a: GO:1905496 {is_inferred="true"} ! regulation of triplex DNA binding + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35804 | dph | 2016-09-23 13:28:03 -0700 (Fri, 23 Sep 2016) | 2 lines Trying to fix build by removing redundant lines in the header. changes in entailments ------------------------------------------------------------------------ r35801 | hjd | 2016-09-23 12:44:17 -0700 (Fri, 23 Sep 2016) | 2 lines added more plant enzymes changes in entailments ------------------------------------------------------------------------ r35799 | termgenie | 2016-09-23 10:33:13 -0700 (Fri, 23 Sep 2016) | 2 lines TermGenie commit for user: hbye reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35799) +++ go_inferences.obo (working copy) @@ -73358,17 +73358,17 @@ [Term] id: GO:1902076 ! regulation of lateral motor column neuron migration -is_a: GO:2001222 {is_inferred="true"} ! regulation of neuron migration +is_a: GO:1905483 {is_inferred="true"} ! regulation of motor neuron migration [Term] id: GO:1902077 ! negative regulation of lateral motor column neuron migration is_a: GO:1902076 {is_inferred="true"} ! regulation of lateral motor column neuron migration -is_a: GO:2001223 {is_inferred="true"} ! negative regulation of neuron migration +is_a: GO:1905484 {is_inferred="true"} ! negative regulation of motor neuron migration [Term] id: GO:1902078 ! positive regulation of lateral motor column neuron migration is_a: GO:1902076 {is_inferred="true"} ! regulation of lateral motor column neuron migration -is_a: GO:2001224 {is_inferred="true"} ! positive regulation of neuron migration +is_a: GO:1905485 {is_inferred="true"} ! positive regulation of motor neuron migration [Term] id: GO:1902079 ! D-valine catabolic process @@ -89893,6 +89893,53 @@ is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein [Term] +id: GO:1905483 ! regulation of motor neuron migration +is_a: GO:2001222 {is_inferred="true"} ! regulation of neuron migration + +[Term] +id: GO:1905484 ! negative regulation of motor neuron migration +is_a: GO:1905483 {is_inferred="true"} ! regulation of motor neuron migration +is_a: GO:2001223 {is_inferred="true"} ! negative regulation of neuron migration + +[Term] +id: GO:1905485 ! positive regulation of motor neuron migration +is_a: GO:1905483 {is_inferred="true"} ! regulation of motor neuron migration +is_a: GO:2001224 {is_inferred="true"} ! positive regulation of neuron migration + +[Term] +id: GO:1905486 ! regulation of anterior/posterior axon guidance +is_a: GO:1902667 {is_inferred="true"} ! regulation of axon guidance + +[Term] +id: GO:1905487 ! negative regulation of anterior/posterior axon guidance +is_a: GO:1902668 {is_inferred="true"} ! negative regulation of axon guidance +is_a: GO:1905486 {is_inferred="true"} ! regulation of anterior/posterior axon guidance + +[Term] +id: GO:1905488 ! positive regulation of anterior/posterior axon guidance +is_a: GO:1902669 {is_inferred="true"} ! positive regulation of axon guidance +is_a: GO:1905486 {is_inferred="true"} ! regulation of anterior/posterior axon guidance + +[Term] +id: GO:1905489 ! regulation of sensory neuron axon guidance +is_a: GO:1902667 {is_inferred="true"} ! regulation of axon guidance + +[Term] +id: GO:1905490 ! negative regulation of sensory neuron axon guidance +is_a: GO:1902668 {is_inferred="true"} ! negative regulation of axon guidance +is_a: GO:1905489 {is_inferred="true"} ! regulation of sensory neuron axon guidance + +[Term] +id: GO:1905491 ! positive regulation of sensory neuron axon guidance +is_a: GO:1902669 {is_inferred="true"} ! positive regulation of axon guidance +is_a: GO:1905489 {is_inferred="true"} ! regulation of sensory neuron axon guidance + +[Term] +id: GO:1905492 ! positive regulation of branching morphogenesis of a nerve +is_a: GO:0051962 {is_inferred="true"} ! positive regulation of nervous system development +is_a: GO:2000172 {is_inferred="true"} ! regulation of branching morphogenesis of a nerve + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35790 | paola | 2016-09-23 02:00:16 -0700 (Fri, 23 Sep 2016) | 3 lines GH NTR/OTR: multiciliation-related classes #12672 - work in progress - added GO:0097727 blepharoplast changes in entailments ------------------------------------------------------------------------ r35786 | tberardi | 2016-09-22 16:54:48 -0700 (Thu, 22 Sep 2016) | 1 line GH12668 NTR (then obsolete): triplex DNA unwinding - closed changes in entailments ------------------------------------------------------------------------ r35783 | termgenie | 2016-09-22 14:18:22 -0700 (Thu, 22 Sep 2016) | 2 lines TermGenie commit for user: vw reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35783) +++ go_inferences.obo (working copy) @@ -59105,20 +59105,20 @@ [Term] id: GO:0090313 ! regulation of protein targeting to membrane -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1903533 {is_inferred="true"} ! regulation of protein targeting +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:0090314 ! positive regulation of protein targeting to membrane -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:0090313 {is_inferred="true"} ! regulation of protein targeting to membrane is_a: GO:0090316 {is_inferred="true"} ! positive regulation of intracellular protein transport +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:0090315 ! negative regulation of protein targeting to membrane -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:0090313 {is_inferred="true"} ! regulation of protein targeting to membrane is_a: GO:0090317 {is_inferred="true"} ! negative regulation of intracellular protein transport +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:0090316 ! positive regulation of intracellular protein transport @@ -66470,6 +66470,7 @@ id: GO:1900739 ! regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway is_a: GO:1901028 {is_inferred="true"} ! regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:1903747 {is_inferred="true"} ! regulation of establishment of protein localization to mitochondrion +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1900740 ! positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway @@ -66476,6 +66477,7 @@ is_a: GO:1900739 {is_inferred="true"} ! regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway is_a: GO:1901030 {is_inferred="true"} ! positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway is_a: GO:1903749 {is_inferred="true"} ! positive regulation of establishment of protein localization to mitochondrion +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1900741 ! regulation of filamentous growth of a population of unicellular organisms in response to pH @@ -77286,7 +77288,7 @@ [Term] id: GO:1902897 ! regulation of postsynaptic density protein 95 clustering is_a: GO:1901626 {is_inferred="true"} ! regulation of postsynaptic membrane organization -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1902898 ! fatty acid methyl ester metabolic process @@ -78164,18 +78166,19 @@ id: GO:1903076 ! regulation of protein localization to plasma membrane is_a: GO:1903729 {is_inferred="true"} ! regulation of plasma membrane organization is_a: GO:1904375 {is_inferred="true"} ! regulation of protein localization to cell periphery +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1903077 ! negative regulation of protein localization to plasma membrane -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane is_a: GO:1904376 {is_inferred="true"} ! negative regulation of protein localization to cell periphery +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1903078 ! positive regulation of protein localization to plasma membrane -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903076 {is_inferred="true"} ! regulation of protein localization to plasma membrane is_a: GO:1904377 {is_inferred="true"} ! positive regulation of protein localization to cell periphery +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1903080 ! regulation of C-C chemokine receptor CCR7 signaling pathway @@ -80502,23 +80505,23 @@ [Term] id: GO:1903567 ! regulation of protein localization to ciliary membrane -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1903564 {is_inferred="true"} ! regulation of protein localization to cilium is_a: GO:1904375 {is_inferred="true"} ! regulation of protein localization to cell periphery +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1903568 ! negative regulation of protein localization to ciliary membrane -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1903565 {is_inferred="true"} ! negative regulation of protein localization to cilium is_a: GO:1903567 {is_inferred="true"} ! regulation of protein localization to ciliary membrane is_a: GO:1904376 {is_inferred="true"} ! negative regulation of protein localization to cell periphery +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1903569 ! positive regulation of protein localization to ciliary membrane -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1903566 {is_inferred="true"} ! positive regulation of protein localization to cilium is_a: GO:1903567 {is_inferred="true"} ! regulation of protein localization to ciliary membrane is_a: GO:1904377 {is_inferred="true"} ! positive regulation of protein localization to cell periphery +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1903570 ! regulation of protein kinase D signaling @@ -80867,6 +80870,7 @@ is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport is_a: GO:1903214 {is_inferred="true"} ! regulation of protein targeting to mitochondrion is_a: GO:1904589 {is_inferred="true"} ! regulation of protein import +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1903637 ! negative regulation of protein import into mitochondrial outer membrane @@ -80874,6 +80878,7 @@ is_a: GO:1903215 {is_inferred="true"} ! negative regulation of protein targeting to mitochondrion is_a: GO:1903636 {is_inferred="true"} ! regulation of protein import into mitochondrial outer membrane is_a: GO:1904590 {is_inferred="true"} ! negative regulation of protein import +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1903638 ! positive regulation of protein import into mitochondrial outer membrane @@ -80881,6 +80886,7 @@ is_a: GO:1903636 {is_inferred="true"} ! regulation of protein import into mitochondrial outer membrane is_a: GO:1903955 {is_inferred="true"} ! positive regulation of protein targeting to mitochondrion is_a: GO:1904591 {is_inferred="true"} ! positive regulation of protein import +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1903639 ! regulation of gastrin-induced gastric acid secretion @@ -82159,20 +82165,17 @@ [Term] id: GO:1903909 ! regulation of receptor clustering -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1903910 ! negative regulation of receptor clustering -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization -is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization is_a: GO:1903909 {is_inferred="true"} ! regulation of receptor clustering +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1903911 ! positive regulation of receptor clustering -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization -is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization is_a: GO:1903909 {is_inferred="true"} ! regulation of receptor clustering +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1903912 ! negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation @@ -82780,20 +82783,17 @@ [Term] id: GO:1904032 ! regulation of t-SNARE clustering -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization -is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1904033 ! negative regulation of t-SNARE clustering -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization -is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization is_a: GO:1904032 {is_inferred="true"} ! regulation of t-SNARE clustering +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1904034 ! positive regulation of t-SNARE clustering -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization -is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization is_a: GO:1904032 {is_inferred="true"} ! regulation of t-SNARE clustering +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1904035 ! regulation of epithelial cell apoptotic process @@ -85156,20 +85156,20 @@ [Term] id: GO:1904508 ! regulation of protein localization to basolateral plasma membrane -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1904375 {is_inferred="true"} ! regulation of protein localization to cell periphery +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane [Term] id: GO:1904509 ! negative regulation of protein localization to basolateral plasma membrane -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1904376 {is_inferred="true"} ! negative regulation of protein localization to cell periphery is_a: GO:1904508 {is_inferred="true"} ! regulation of protein localization to basolateral plasma membrane +is_a: GO:1905476 {is_inferred="true"} ! negative regulation of protein localization to membrane [Term] id: GO:1904510 ! positive regulation of protein localization to basolateral plasma membrane -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1904377 {is_inferred="true"} ! positive regulation of protein localization to cell periphery is_a: GO:1904508 {is_inferred="true"} ! regulation of protein localization to basolateral plasma membrane +is_a: GO:1905477 {is_inferred="true"} ! positive regulation of protein localization to membrane [Term] id: GO:1904511 ! cytoplasmic microtubule plus-end @@ -89852,6 +89852,47 @@ is_a: GO:0044340 {is_inferred="true"} ! canonical Wnt signaling pathway involved in regulation of cell proliferation [Term] +id: GO:1905475 ! regulation of protein localization to membrane +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] +id: GO:1905476 ! negative regulation of protein localization to membrane +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane + +[Term] +id: GO:1905477 ! positive regulation of protein localization to membrane +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905475 {is_inferred="true"} ! regulation of protein localization to membrane + +[Term] +id: GO:1905478 ! regulation of glutamate-ammonia ligase activity +is_a: GO:0051340 {is_inferred="true"} ! regulation of ligase activity + +[Term] +id: GO:1905479 ! negative regulation of glutamate-ammonia ligase activity +is_a: GO:0051352 {is_inferred="true"} ! negative regulation of ligase activity +is_a: GO:1905478 {is_inferred="true"} ! regulation of glutamate-ammonia ligase activity + +[Term] +id: GO:1905480 ! positive regulation of glutamate-ammonia ligase activity +is_a: GO:0051351 {is_inferred="true"} ! positive regulation of ligase activity +is_a: GO:1905478 {is_inferred="true"} ! regulation of glutamate-ammonia ligase activity + +[Term] +id: GO:1905481 ! cytoplasmic sequestering of protein involved in mitotic DNA replication checkpoint +is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process + +[Term] +id: GO:1905482 ! cytoplasmic sequestering of protein involved in G2 DNA damage checkpoint +is_a: GO:0022402 {is_inferred="true"} ! cell cycle process +is_a: GO:0051220 {is_inferred="true"} ! cytoplasmic sequestering of protein + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35773 | foulger | 2016-09-22 07:37:39 -0700 (Thu, 22 Sep 2016) | 11 lines A few tidy-up edits: changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35773) +++ go_inferences.obo (working copy) @@ -73920,15 +73920,18 @@ [Term] id: GO:1902186 ! regulation of viral release from host cell +is_a: GO:0040012 {is_inferred="true"} ! regulation of locomotion is_a: GO:1903900 {is_inferred="true"} ! regulation of viral life cycle [Term] id: GO:1902187 ! negative regulation of viral release from host cell +is_a: GO:0040013 {is_inferred="true"} ! negative regulation of locomotion is_a: GO:1902186 {is_inferred="true"} ! regulation of viral release from host cell is_a: GO:1903901 {is_inferred="true"} ! negative regulation of viral life cycle [Term] id: GO:1902188 ! positive regulation of viral release from host cell +is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion is_a: GO:1902186 {is_inferred="true"} ! regulation of viral release from host cell is_a: GO:1903902 {is_inferred="true"} ! positive regulation of viral life cycle ------------------------------------------------------------------------ r35766 | tberardi | 2016-09-21 12:50:44 -0700 (Wed, 21 Sep 2016) | 1 line GH12670 rename GO:0050139, nicotinate glucosyltransferase activity and create new term - closed changes in entailments ------------------------------------------------------------------------ r35764 | termgenie | 2016-09-21 09:40:38 -0700 (Wed, 21 Sep 2016) | 2 lines TermGenie commit for user: bc reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35764) +++ go_inferences.obo (working copy) @@ -89845,6 +89845,10 @@ is_a: GO:2001162 {is_inferred="true"} ! positive regulation of histone H3-K79 methylation [Term] +id: GO:1905474 ! canonical Wnt signaling pathway involved in stem cell proliferation +is_a: GO:0044340 {is_inferred="true"} ! canonical Wnt signaling pathway involved in regulation of cell proliferation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35761 | termgenie | 2016-09-21 08:54:04 -0700 (Wed, 21 Sep 2016) | 4 lines TermGenie commit for user: hbye reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35761) +++ go_inferences.obo (working copy) @@ -89831,6 +89831,20 @@ is_a: GO:1905468 {is_inferred="true"} ! regulation of clathrin-coated pit assembly [Term] +id: GO:1905471 ! regulation of histone H3-K79 dimethylation +is_a: GO:2001160 {is_inferred="true"} ! regulation of histone H3-K79 methylation + +[Term] +id: GO:1905472 ! negative regulation of histone H3-K79 dimethylation +is_a: GO:1905471 {is_inferred="true"} ! regulation of histone H3-K79 dimethylation +is_a: GO:2001161 {is_inferred="true"} ! negative regulation of histone H3-K79 methylation + +[Term] +id: GO:1905473 ! positive regulation of histone H3-K79 dimethylation +is_a: GO:1905471 {is_inferred="true"} ! regulation of histone H3-K79 dimethylation +is_a: GO:2001162 {is_inferred="true"} ! positive regulation of histone H3-K79 methylation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35751 | tberardi | 2016-09-20 16:55:09 -0700 (Tue, 20 Sep 2016) | 1 line GH12496 obsolete: multicellular structure septum development - closed changes in entailments ------------------------------------------------------------------------ r35749 | tberardi | 2016-09-20 16:41:37 -0700 (Tue, 20 Sep 2016) | 1 line GH12668 NTR: triplex DNA unwinding - closed changes in entailments ------------------------------------------------------------------------ r35747 | tberardi | 2016-09-20 16:28:03 -0700 (Tue, 20 Sep 2016) | 1 line GH12666 MP GO:0071851 mitotic G1 cell cycle arrest in response to nitrogen starvation - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35747) +++ go_inferences.obo (working copy) @@ -81150,6 +81150,10 @@ is_a: GO:0044690 {is_inferred="true"} ! methionine import [Term] +id: GO:1903693 ! regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation +is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle + +[Term] id: GO:1903694 ! positive regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation is_a: GO:0071158 {is_inferred="true"} ! positive regulation of cell cycle arrest is_a: GO:1903693 {is_inferred="true"} ! regulation of mitotic G1 cell cycle arrest in response to nitrogen starvation ------------------------------------------------------------------------ r35745 | tberardi | 2016-09-20 16:18:07 -0700 (Tue, 20 Sep 2016) | 1 line GH12669 Rename "thrombin receptor activity" to "thrombin-activated receptor activity" and change def - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35745) +++ go_inferences.obo (working copy) @@ -52203,18 +52203,18 @@ is_a: GO:0030246 {is_inferred="true"} ! carbohydrate binding [Term] -id: GO:0070494 ! regulation of thrombin receptor signaling pathway +id: GO:0070494 ! regulation of thrombin-activated receptor signaling pathway is_a: GO:0008277 {is_inferred="true"} ! regulation of G-protein coupled receptor protein signaling pathway [Term] -id: GO:0070495 ! negative regulation of thrombin receptor signaling pathway +id: GO:0070495 ! negative regulation of thrombin-activated receptor signaling pathway is_a: GO:0045744 {is_inferred="true"} ! negative regulation of G-protein coupled receptor protein signaling pathway -is_a: GO:0070494 {is_inferred="true"} ! regulation of thrombin receptor signaling pathway +is_a: GO:0070494 {is_inferred="true"} ! regulation of thrombin-activated receptor signaling pathway [Term] -id: GO:0070496 ! positive regulation of thrombin receptor signaling pathway +id: GO:0070496 ! positive regulation of thrombin-activated receptor signaling pathway is_a: GO:0045745 {is_inferred="true"} ! positive regulation of G-protein coupled receptor protein signaling pathway -is_a: GO:0070494 {is_inferred="true"} ! regulation of thrombin receptor signaling pathway +is_a: GO:0070494 {is_inferred="true"} ! regulation of thrombin-activated receptor signaling pathway [Term] id: GO:0070499 ! exosporium assembly ------------------------------------------------------------------------ r35743 | termgenie | 2016-09-20 10:58:29 -0700 (Tue, 20 Sep 2016) | 4 lines TermGenie commit for user: bf reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35743) +++ go_inferences.obo (working copy) @@ -89811,6 +89811,22 @@ is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] +id: GO:1905468 ! regulation of clathrin-coated pit assembly +is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization + +[Term] +id: GO:1905469 ! negative regulation of clathrin-coated pit assembly +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization +is_a: GO:1905468 {is_inferred="true"} ! regulation of clathrin-coated pit assembly + +[Term] +id: GO:1905470 ! positive regulation of clathrin-coated pit assembly +is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization +is_a: GO:1905468 {is_inferred="true"} ! regulation of clathrin-coated pit assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35715 | termgenie | 2016-09-19 09:23:26 -0700 (Mon, 19 Sep 2016) | 4 lines TermGenie commit for user: ans reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35715) +++ go_inferences.obo (working copy) @@ -75179,9 +75179,9 @@ [Term] id: GO:1902449 ! regulation of ATP-dependent DNA helicase activity -is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0043462 {is_inferred="true"} ! regulation of ATPase activity is_a: GO:0051095 {is_inferred="true"} ! regulation of helicase activity +is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding [Term] id: GO:1902450 ! negative regulation of ATP-dependent DNA helicase activity @@ -75188,7 +75188,7 @@ is_a: GO:0032780 {is_inferred="true"} ! negative regulation of ATPase activity is_a: GO:0051097 {is_inferred="true"} ! negative regulation of helicase activity is_a: GO:1902449 {is_inferred="true"} ! regulation of ATP-dependent DNA helicase activity -is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization +is_a: GO:1905463 {is_inferred="true"} ! negative regulation of DNA duplex unwinding [Term] id: GO:1902451 ! positive regulation of ATP-dependent DNA helicase activity @@ -75195,7 +75195,7 @@ is_a: GO:0032781 {is_inferred="true"} ! positive regulation of ATPase activity is_a: GO:0051096 {is_inferred="true"} ! positive regulation of helicase activity is_a: GO:1902449 {is_inferred="true"} ! regulation of ATP-dependent DNA helicase activity -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization +is_a: GO:1905464 {is_inferred="true"} ! positive regulation of DNA duplex unwinding [Term] id: GO:1902455 ! negative regulation of stem cell population maintenance @@ -89769,6 +89769,48 @@ is_a: GO:1905456 {is_inferred="true"} ! regulation of lymphoid progenitor cell differentiation [Term] +id: GO:1905459 ! regulation of vascular associated smooth muscle cell apoptotic process +is_a: GO:0034391 {is_inferred="true"} ! regulation of smooth muscle cell apoptotic process + +[Term] +id: GO:1905460 ! negative regulation of vascular associated smooth muscle cell apoptotic process +is_a: GO:0034392 {is_inferred="true"} ! negative regulation of smooth muscle cell apoptotic process +is_a: GO:1905459 {is_inferred="true"} ! regulation of vascular associated smooth muscle cell apoptotic process + +[Term] +id: GO:1905461 ! positive regulation of vascular associated smooth muscle cell apoptotic process +is_a: GO:0034393 {is_inferred="true"} ! positive regulation of smooth muscle cell apoptotic process +is_a: GO:1905459 {is_inferred="true"} ! regulation of vascular associated smooth muscle cell apoptotic process + +[Term] +id: GO:1905462 ! regulation of DNA duplex unwinding +is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization + +[Term] +id: GO:1905463 ! negative regulation of DNA duplex unwinding +is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization + +[Term] +id: GO:1905464 ! positive regulation of DNA duplex unwinding +is_a: GO:1905462 {is_inferred="true"} ! regulation of DNA duplex unwinding +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization + +[Term] +id: GO:1905465 ! regulation of G-quadruplex DNA unwinding +is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization + +[Term] +id: GO:1905466 ! negative regulation of G-quadruplex DNA unwinding +is_a: GO:1905465 {is_inferred="true"} ! regulation of G-quadruplex DNA unwinding +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization + +[Term] +id: GO:1905467 ! positive regulation of G-quadruplex DNA unwinding +is_a: GO:1905465 {is_inferred="true"} ! regulation of G-quadruplex DNA unwinding +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35711 | paola | 2016-09-19 09:13:54 -0700 (Mon, 19 Sep 2016) | 3 lines GH comment in: lysosomal protein catabolic process term #12663 - closed - edited comment. changes in entailments ------------------------------------------------------------------------ r35625 | paola | 2016-09-19 01:23:40 -0700 (Mon, 19 Sep 2016) | 3 lines GH New term for LEM domain #12664 - closed - added GO:0097726 LEM domain binding changes in entailments ------------------------------------------------------------------------ r35609 | dph | 2016-09-17 07:09:44 -0700 (Sat, 17 Sep 2016) | 2 lines GH12653-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35609) +++ go_inferences.obo (working copy) @@ -42630,6 +42630,11 @@ is_a: GO:0048308 {is_inferred="true"} ! organelle inheritance [Term] +id: GO:0048315 ! conidium formation +is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction +is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process + +[Term] id: GO:0048316 ! seed development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -51201,6 +51206,11 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] +id: GO:0061794 ! conidium development +is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0048837 {is_inferred="true"} ! sorus development + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -57290,19 +57300,32 @@ [Term] id: GO:0075306 ! regulation of conidium formation is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:0031156 {is_inferred="true"} ! regulation of sorocarp development is_a: GO:0034305 {is_inferred="true"} ! regulation of asexual sporulation +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] id: GO:0075307 ! positive regulation of conidium formation +is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels is_a: GO:0043938 {is_inferred="true"} ! positive regulation of sporulation +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0075306 {is_inferred="true"} ! regulation of conidium formation is_a: GO:1903666 {is_inferred="true"} ! positive regulation of asexual reproduction +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] id: GO:0075308 ! negative regulation of conidium formation +is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0032108 {is_inferred="true"} ! negative regulation of response to nutrient levels is_a: GO:0043939 {is_inferred="true"} ! negative regulation of sporulation +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:0075306 {is_inferred="true"} ! regulation of conidium formation is_a: GO:1903665 {is_inferred="true"} ! negative regulation of asexual reproduction +is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:0075310 ! regulation of sporangium development ------------------------------------------------------------------------ r35581 | termgenie | 2016-09-16 05:53:39 -0700 (Fri, 16 Sep 2016) | 7 lines TermGenie commit for user: rz reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35581) +++ go_inferences.obo (working copy) @@ -89667,6 +89667,20 @@ is_a: GO:1905441 {is_inferred="true"} ! response to chondroitin 4'-sulfate [Term] +id: GO:1905443 ! regulation of clathrin coat assembly +is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly + +[Term] +id: GO:1905444 ! negative regulation of clathrin coat assembly +is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly +is_a: GO:1905443 {is_inferred="true"} ! regulation of clathrin coat assembly + +[Term] +id: GO:1905445 ! positive regulation of clathrin coat assembly +is_a: GO:0031334 {is_inferred="true"} ! positive regulation of protein complex assembly +is_a: GO:1905443 {is_inferred="true"} ! regulation of clathrin coat assembly + +[Term] id: GO:1905446 ! regulation of mitochondrial ATP synthesis coupled electron transport is_a: GO:0002082 {is_inferred="true"} ! regulation of oxidative phosphorylation is_a: GO:0043457 {is_inferred="true"} ! regulation of cellular respiration @@ -89684,6 +89698,54 @@ is_a: GO:1905446 {is_inferred="true"} ! regulation of mitochondrial ATP synthesis coupled electron transport [Term] +id: GO:1905449 ! regulation of Fc-gamma receptor signaling pathway involved in phagocytosis +is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process +is_a: GO:0050764 {is_inferred="true"} ! regulation of phagocytosis +is_a: GO:0060368 {is_inferred="true"} ! regulation of Fc receptor mediated stimulatory signaling pathway + +[Term] +id: GO:1905450 ! negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis +is_a: GO:0002698 {is_inferred="true"} ! negative regulation of immune effector process +is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction +is_a: GO:0050765 {is_inferred="true"} ! negative regulation of phagocytosis +is_a: GO:1905449 {is_inferred="true"} ! regulation of Fc-gamma receptor signaling pathway involved in phagocytosis + +[Term] +id: GO:1905451 ! positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis +is_a: GO:0002699 {is_inferred="true"} ! positive regulation of immune effector process +is_a: GO:0050766 {is_inferred="true"} ! positive regulation of phagocytosis +is_a: GO:0060369 {is_inferred="true"} ! positive regulation of Fc receptor mediated stimulatory signaling pathway +is_a: GO:1905449 {is_inferred="true"} ! regulation of Fc-gamma receptor signaling pathway involved in phagocytosis + +[Term] +id: GO:1905453 ! regulation of myeloid progenitor cell differentiation +is_a: GO:1901532 {is_inferred="true"} ! regulation of hematopoietic progenitor cell differentiation + +[Term] +id: GO:1905454 ! negative regulation of myeloid progenitor cell differentiation +is_a: GO:1901533 {is_inferred="true"} ! negative regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905453 {is_inferred="true"} ! regulation of myeloid progenitor cell differentiation + +[Term] +id: GO:1905455 ! positive regulation of myeloid progenitor cell differentiation +is_a: GO:1901534 {is_inferred="true"} ! positive regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905453 {is_inferred="true"} ! regulation of myeloid progenitor cell differentiation + +[Term] +id: GO:1905456 ! regulation of lymphoid progenitor cell differentiation +is_a: GO:1901532 {is_inferred="true"} ! regulation of hematopoietic progenitor cell differentiation + +[Term] +id: GO:1905457 ! negative regulation of lymphoid progenitor cell differentiation +is_a: GO:1901533 {is_inferred="true"} ! negative regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905456 {is_inferred="true"} ! regulation of lymphoid progenitor cell differentiation + +[Term] +id: GO:1905458 ! positive regulation of lymphoid progenitor cell differentiation +is_a: GO:1901534 {is_inferred="true"} ! positive regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905456 {is_inferred="true"} ! regulation of lymphoid progenitor cell differentiation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -91568,18 +91630,18 @@ [Term] id: GO:2000174 ! regulation of pro-T cell differentiation is_a: GO:0045580 {is_inferred="true"} ! regulation of T cell differentiation -is_a: GO:1901532 {is_inferred="true"} ! regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905456 {is_inferred="true"} ! regulation of lymphoid progenitor cell differentiation [Term] id: GO:2000175 ! negative regulation of pro-T cell differentiation is_a: GO:0045581 {is_inferred="true"} ! negative regulation of T cell differentiation -is_a: GO:1901533 {is_inferred="true"} ! negative regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905457 {is_inferred="true"} ! negative regulation of lymphoid progenitor cell differentiation is_a: GO:2000174 {is_inferred="true"} ! regulation of pro-T cell differentiation [Term] id: GO:2000176 ! positive regulation of pro-T cell differentiation is_a: GO:0045582 {is_inferred="true"} ! positive regulation of T cell differentiation -is_a: GO:1901534 {is_inferred="true"} ! positive regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905458 {is_inferred="true"} ! positive regulation of lymphoid progenitor cell differentiation is_a: GO:2000174 {is_inferred="true"} ! regulation of pro-T cell differentiation [Term] @@ -95648,16 +95710,16 @@ [Term] id: GO:2000973 ! regulation of pro-B cell differentiation -is_a: GO:1901532 {is_inferred="true"} ! regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905456 {is_inferred="true"} ! regulation of lymphoid progenitor cell differentiation [Term] id: GO:2000974 ! negative regulation of pro-B cell differentiation -is_a: GO:1901533 {is_inferred="true"} ! negative regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905457 {is_inferred="true"} ! negative regulation of lymphoid progenitor cell differentiation is_a: GO:2000973 {is_inferred="true"} ! regulation of pro-B cell differentiation [Term] id: GO:2000975 ! positive regulation of pro-B cell differentiation -is_a: GO:1901534 {is_inferred="true"} ! positive regulation of hematopoietic progenitor cell differentiation +is_a: GO:1905458 {is_inferred="true"} ! positive regulation of lymphoid progenitor cell differentiation is_a: GO:2000973 {is_inferred="true"} ! regulation of pro-B cell differentiation [Term] ------------------------------------------------------------------------ r35570 | termgenie | 2016-09-15 12:01:32 -0700 (Thu, 15 Sep 2016) | 4 lines TermGenie commit for user: dph reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35570) +++ go_inferences.obo (working copy) @@ -77553,20 +77553,17 @@ [Term] id: GO:1902956 ! regulation of mitochondrial electron transport, NADH to ubiquinone -is_a: GO:0002082 {is_inferred="true"} ! regulation of oxidative phosphorylation -is_a: GO:0043457 {is_inferred="true"} ! regulation of cellular respiration +is_a: GO:1905446 {is_inferred="true"} ! regulation of mitochondrial ATP synthesis coupled electron transport [Term] id: GO:1902957 ! negative regulation of mitochondrial electron transport, NADH to ubiquinone -is_a: GO:0090324 {is_inferred="true"} ! negative regulation of oxidative phosphorylation -is_a: GO:1901856 {is_inferred="true"} ! negative regulation of cellular respiration is_a: GO:1902956 {is_inferred="true"} ! regulation of mitochondrial electron transport, NADH to ubiquinone +is_a: GO:1905447 {is_inferred="true"} ! negative regulation of mitochondrial ATP synthesis coupled electron transport [Term] id: GO:1902958 ! positive regulation of mitochondrial electron transport, NADH to ubiquinone -is_a: GO:1901857 {is_inferred="true"} ! positive regulation of cellular respiration is_a: GO:1902956 {is_inferred="true"} ! regulation of mitochondrial electron transport, NADH to ubiquinone -is_a: GO:1903862 {is_inferred="true"} ! positive regulation of oxidative phosphorylation +is_a: GO:1905448 {is_inferred="true"} ! positive regulation of mitochondrial ATP synthesis coupled electron transport [Term] id: GO:1902959 ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process @@ -89649,23 +89646,44 @@ [Term] id: GO:1905439 ! response to chondroitin 6'-sulfate -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1905440 ! cellular response to chondroitin 6'-sulfate -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1905439 {is_inferred="true"} ! response to chondroitin 6'-sulfate [Term] id: GO:1905441 ! response to chondroitin 4'-sulfate -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] id: GO:1905442 ! cellular response to chondroitin 4'-sulfate -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1905441 {is_inferred="true"} ! response to chondroitin 4'-sulfate [Term] +id: GO:1905446 ! regulation of mitochondrial ATP synthesis coupled electron transport +is_a: GO:0002082 {is_inferred="true"} ! regulation of oxidative phosphorylation +is_a: GO:0043457 {is_inferred="true"} ! regulation of cellular respiration + +[Term] +id: GO:1905447 ! negative regulation of mitochondrial ATP synthesis coupled electron transport +is_a: GO:0090324 {is_inferred="true"} ! negative regulation of oxidative phosphorylation +is_a: GO:1901856 {is_inferred="true"} ! negative regulation of cellular respiration +is_a: GO:1905446 {is_inferred="true"} ! regulation of mitochondrial ATP synthesis coupled electron transport + +[Term] +id: GO:1905448 ! positive regulation of mitochondrial ATP synthesis coupled electron transport +is_a: GO:1901857 {is_inferred="true"} ! positive regulation of cellular respiration +is_a: GO:1903862 {is_inferred="true"} ! positive regulation of oxidative phosphorylation +is_a: GO:1905446 {is_inferred="true"} ! regulation of mitochondrial ATP synthesis coupled electron transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35557 | paola | 2016-09-15 03:45:10 -0700 (Thu, 15 Sep 2016) | 3 lines GH NTR: histone H3-K79 dimethylation #12661 - closed - added GO:0097725 histone H3-K79 dimethylation changes in entailments ------------------------------------------------------------------------ r35550 | termgenie | 2016-09-14 12:59:37 -0700 (Wed, 14 Sep 2016) | 5 lines TermGenie commit for user: cvs reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35550) +++ go_inferences.obo (working copy) @@ -87273,7 +87273,7 @@ [Term] id: GO:1904955 ! planar cell polarity pathway involved in midbrain dopaminergic neuron differentiation is_a: GO:0060071 {is_inferred="true"} ! Wnt signaling pathway, planar cell polarity pathway -is_a: GO:1904953 {is_inferred="true"} ! Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation +is_a: GO:1905438 {is_inferred="true"} ! non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation [Term] id: GO:1904956 ! regulation of midbrain dopaminergic neuron differentiation @@ -89629,6 +89629,43 @@ is_a: GO:1905432 {is_inferred="true"} ! regulation of retrograde trans-synaptic signaling by neuropeptide [Term] +id: GO:1905435 ! regulation of histone H3-K4 trimethylation +is_a: GO:0051569 {is_inferred="true"} ! regulation of histone H3-K4 methylation + +[Term] +id: GO:1905436 ! negative regulation of histone H3-K4 trimethylation +is_a: GO:0051572 {is_inferred="true"} ! negative regulation of histone H3-K4 methylation +is_a: GO:1905435 {is_inferred="true"} ! regulation of histone H3-K4 trimethylation + +[Term] +id: GO:1905437 ! positive regulation of histone H3-K4 trimethylation +is_a: GO:0051571 {is_inferred="true"} ! positive regulation of histone H3-K4 methylation +is_a: GO:1905435 {is_inferred="true"} ! regulation of histone H3-K4 trimethylation + +[Term] +id: GO:1905438 ! non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation +is_a: GO:0035567 {is_inferred="true"} ! non-canonical Wnt signaling pathway +is_a: GO:1904953 {is_inferred="true"} ! Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation + +[Term] +id: GO:1905439 ! response to chondroitin 6'-sulfate +is_a: GO:0050896 {is_inferred="true"} ! response to stimulus + +[Term] +id: GO:1905440 ! cellular response to chondroitin 6'-sulfate +is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:1905439 {is_inferred="true"} ! response to chondroitin 6'-sulfate + +[Term] +id: GO:1905441 ! response to chondroitin 4'-sulfate +is_a: GO:0050896 {is_inferred="true"} ! response to stimulus + +[Term] +id: GO:1905442 ! cellular response to chondroitin 4'-sulfate +is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:1905441 {is_inferred="true"} ! response to chondroitin 4'-sulfate + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35541 | dph | 2016-09-14 06:29:22 -0700 (Wed, 14 Sep 2016) | 2 lines Removed part of relation between epithelial to mesenchymal transition and mesenchymal cell development. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35541) +++ go_inferences.obo (working copy) @@ -12863,19 +12863,19 @@ [Term] id: GO:0010717 ! regulation of epithelial to mesenchymal transition -is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] id: GO:0010718 ! positive regulation of epithelial to mesenchymal transition is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition -is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] id: GO:0010719 ! negative regulation of epithelial to mesenchymal transition is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition -is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] ------------------------------------------------------------------------ r35539 | termgenie | 2016-09-14 06:13:22 -0700 (Wed, 14 Sep 2016) | 4 lines TermGenie commit for user: bf reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35539) +++ go_inferences.obo (working copy) @@ -89612,6 +89612,23 @@ is_a: GO:0015833 {is_inferred="true"} ! peptide transport [Term] +id: GO:1905432 ! regulation of retrograde trans-synaptic signaling by neuropeptide +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication +is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling + +[Term] +id: GO:1905433 ! negative regulation of retrograde trans-synaptic signaling by neuropeptide +is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication +is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling +is_a: GO:1905432 {is_inferred="true"} ! regulation of retrograde trans-synaptic signaling by neuropeptide + +[Term] +id: GO:1905434 ! positive regulation of retrograde trans-synaptic signaling by neuropeptide +is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication +is_a: GO:0023056 {is_inferred="true"} ! positive regulation of signaling +is_a: GO:1905432 {is_inferred="true"} ! regulation of retrograde trans-synaptic signaling by neuropeptide + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35537 | paola | 2016-09-14 05:04:49 -0700 (Wed, 14 Sep 2016) | 3 lines GH inconsistencies in TM transport function term names #12587 - closed - see ticket for details. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35537) +++ go_inferences.obo (working copy) @@ -15021,7 +15021,7 @@ is_a: GO:0072509 {is_inferred="true"} ! divalent inorganic cation transmembrane transporter activity [Term] -id: GO:0015415 ! phosphate ion transmembrane-transporting ATPase activity +id: GO:0015415 ! ATPase-coupled phosphate ion transmembrane transporter activity is_a: GO:0015114 {is_inferred="true"} ! phosphate ion transmembrane transporter activity [Term] @@ -69112,7 +69112,7 @@ is_a: GO:0015103 {is_inferred="true"} ! inorganic anion transmembrane transporter activity [Term] -id: GO:1901238 ! tungstate transmembrane-transporting ATPase activity +id: GO:1901238 ! ATPase-coupled tungstate transmembrane transporter activity is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances is_a: GO:1901237 {is_inferred="true"} ! tungstate transmembrane transporter activity @@ -69130,7 +69130,7 @@ is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity [Term] -id: GO:1901243 ! methionine transmembrane-transporting ATPase activity +id: GO:1901243 ! ATPase-coupled methionine transmembrane transporter activity is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances is_a: GO:0043865 {is_inferred="true"} ! methionine transmembrane transporter activity @@ -89609,7 +89609,7 @@ [Term] id: GO:1905431 ! microcystin transport -is_a: GO:0006810 {is_inferred="true"} ! transport +is_a: GO:0015833 {is_inferred="true"} ! peptide transport [Term] id: GO:1990000 ! amyloid fibril formation ------------------------------------------------------------------------ r35528 | termgenie | 2016-09-14 00:39:41 -0700 (Wed, 14 Sep 2016) | 2 lines TermGenie commit for user: cvs reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35528) +++ go_inferences.obo (working copy) @@ -89608,6 +89608,10 @@ is_a: GO:1905429 {is_inferred="true"} ! response to glycine [Term] +id: GO:1905431 ! microcystin transport +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35524 | davidos | 2016-09-13 13:45:33 -0700 (Tue, 13 Sep 2016) | 1 line Fixing cause of inconsistency in presence of complete Uberon import. Also added changes in entailments ------------------------------------------------------------------------ r35524 | davidos | 2016-09-13 13:45:33 -0700 (Tue, 13 Sep 2016) | 1 line Fixing cause of inconsistency in presence of complete Uberon import. Also added changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35524) +++ go_inferences.obo (working copy) @@ -61917,6 +61917,11 @@ is_a: GO:0044445 {is_inferred="true"} ! cytosolic part [Term] +id: GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide +is_a: GO:0098917 {is_inferred="true"} ! retrograde trans-synaptic signaling +is_a: GO:0099540 {is_inferred="true"} ! trans-synaptic signaling by neuropeptide + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -62051,6 +62056,7 @@ [Term] id: GO:0099552 ! trans-synaptic signaling by lipid, modulating synaptic transmission +is_a: GO:0099541 {is_inferred="true"} ! trans-synaptic signaling by lipid is_a: GO:0099550 {is_inferred="true"} ! trans-synaptic signalling, modulating synaptic transmission [Term] ------------------------------------------------------------------------ r35522 | dph | 2016-09-13 13:04:43 -0700 (Tue, 13 Sep 2016) | 2 lines GH12448-closed changes in entailments ------------------------------------------------------------------------ r35520 | dph | 2016-09-13 12:52:32 -0700 (Tue, 13 Sep 2016) | 2 lines GH12466-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35520) +++ go_inferences.obo (working copy) @@ -47725,7 +47725,6 @@ [Term] id: GO:0060049 ! regulation of protein glycosylation -is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process is_a: GO:0010559 {is_inferred="true"} ! regulation of glycoprotein biosynthetic process is_a: GO:0031399 {is_inferred="true"} ! regulation of protein modification process @@ -47732,13 +47731,11 @@ [Term] id: GO:0060050 ! positive regulation of protein glycosylation is_a: GO:0031401 {is_inferred="true"} ! positive regulation of protein modification process -is_a: GO:0045913 {is_inferred="true"} ! positive regulation of carbohydrate metabolic process is_a: GO:0060049 {is_inferred="true"} ! regulation of protein glycosylation [Term] id: GO:0060051 ! negative regulation of protein glycosylation is_a: GO:0031400 {is_inferred="true"} ! negative regulation of protein modification process -is_a: GO:0045912 {is_inferred="true"} ! negative regulation of carbohydrate metabolic process is_a: GO:0060049 {is_inferred="true"} ! regulation of protein glycosylation [Term] ------------------------------------------------------------------------ r35518 | dph | 2016-09-13 12:27:00 -0700 (Tue, 13 Sep 2016) | 2 lines Modified the def of mitotic cytokinesis checkpoint and added it as a child of negative reegulation of G2/M transition of mitotic cell cycle. changes in entailments ------------------------------------------------------------------------ r35515 | dph | 2016-09-13 11:47:26 -0700 (Tue, 13 Sep 2016) | 2 lines GH12477-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35515) +++ go_inferences.obo (working copy) @@ -4553,23 +4553,23 @@ [Term] id: GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis +is_a: GO:0035850 {is_inferred="true"} ! epithelial cell differentiation involved in kidney development is_a: GO:0060231 {is_inferred="true"} ! mesenchymal to epithelial transition +is_a: GO:0072202 {is_inferred="true"} ! cell differentiation involved in metanephros development [Term] id: GO:0003339 ! regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis -is_a: GO:0010769 {is_inferred="true"} ! regulation of cell morphogenesis involved in differentiation -is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0072215 {is_inferred="true"} ! regulation of metanephros development is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis +is_a: GO:2000696 {is_inferred="true"} ! regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:0003340 ! negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis is_a: GO:0003339 {is_inferred="true"} ! regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis -is_a: GO:0010771 {is_inferred="true"} ! negative regulation of cell morphogenesis involved in differentiation -is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation is_a: GO:0072217 {is_inferred="true"} ! negative regulation of metanephros development is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium +is_a: GO:2000697 {is_inferred="true"} ! negative regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:0003348 ! cardiac endothelial cell differentiation @@ -12863,19 +12863,19 @@ [Term] id: GO:0010717 ! regulation of epithelial to mesenchymal transition -is_a: GO:0010769 {is_inferred="true"} ! regulation of cell morphogenesis involved in differentiation +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] id: GO:0010718 ! positive regulation of epithelial to mesenchymal transition is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition -is_a: GO:0010770 {is_inferred="true"} ! positive regulation of cell morphogenesis involved in differentiation +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] id: GO:0010719 ! negative regulation of epithelial to mesenchymal transition is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition -is_a: GO:0010771 {is_inferred="true"} ! negative regulation of cell morphogenesis involved in differentiation +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -50533,7 +50533,9 @@ [Term] id: GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis +is_a: GO:0035850 {is_inferred="true"} ! epithelial cell differentiation involved in kidney development is_a: GO:0060231 {is_inferred="true"} ! mesenchymal to epithelial transition +is_a: GO:0061208 {is_inferred="true"} ! cell differentiation involved in mesonephros development [Term] id: GO:0061271 ! mesenchymal to epithelial transition involved in mesonephric renal vesicle formation @@ -55453,6 +55455,7 @@ [Term] id: GO:0072036 ! mesenchymal to epithelial transition involved in renal vesicle formation +is_a: GO:0035850 {is_inferred="true"} ! epithelial cell differentiation involved in kidney development is_a: GO:0060231 {is_inferred="true"} ! mesenchymal to epithelial transition [Term] @@ -55602,10 +55605,9 @@ [Term] id: GO:0072108 ! positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis is_a: GO:0003339 {is_inferred="true"} ! regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis -is_a: GO:0010770 {is_inferred="true"} ! positive regulation of cell morphogenesis involved in differentiation -is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation is_a: GO:0072216 {is_inferred="true"} ! positive regulation of metanephros development is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium +is_a: GO:2000698 {is_inferred="true"} ! positive regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:0072111 ! cell proliferation involved in kidney development @@ -59019,6 +59021,7 @@ [Term] id: GO:0090299 ! regulation of neural crest formation is_a: GO:0010717 {is_inferred="true"} ! regulation of epithelial to mesenchymal transition +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development [Term] @@ -91030,24 +91033,21 @@ [Term] id: GO:2000084 ! regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis -is_a: GO:0010769 {is_inferred="true"} ! regulation of cell morphogenesis involved in differentiation -is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0061217 {is_inferred="true"} ! regulation of mesonephros development is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis +is_a: GO:2000696 {is_inferred="true"} ! regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:2000085 ! negative regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis -is_a: GO:0010771 {is_inferred="true"} ! negative regulation of cell morphogenesis involved in differentiation -is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation is_a: GO:0061218 {is_inferred="true"} ! negative regulation of mesonephros development is_a: GO:2000084 {is_inferred="true"} ! regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis +is_a: GO:2000697 {is_inferred="true"} ! negative regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:2000086 ! positive regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis -is_a: GO:0010770 {is_inferred="true"} ! positive regulation of cell morphogenesis involved in differentiation -is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation is_a: GO:0061213 {is_inferred="true"} ! positive regulation of mesonephros development is_a: GO:2000084 {is_inferred="true"} ! regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis +is_a: GO:2000698 {is_inferred="true"} ! positive regulation of epithelial cell differentiation involved in kidney development [Term] id: GO:2000087 ! regulation of mesonephric glomerulus development ------------------------------------------------------------------------ r35501 | tberardi | 2016-09-12 17:21:26 -0700 (Mon, 12 Sep 2016) | 1 line GH12417 GO term specificity proposal 2 (gene product specific regulation via catabolism) - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35501) +++ go_inferences.obo (working copy) @@ -93650,22 +93650,6 @@ is_a: GO:2000595 {is_inferred="true"} ! regulation of optic nerve formation [Term] -id: GO:2000598 ! regulation of cyclin catabolic process -is_a: GO:0000079 {is_inferred="true"} ! regulation of cyclin-dependent protein serine/threonine kinase activity -is_a: GO:0032434 {is_inferred="true"} ! regulation of proteasomal ubiquitin-dependent protein catabolic process - -[Term] -id: GO:2000599 ! negative regulation of cyclin catabolic process -is_a: GO:0032435 {is_inferred="true"} ! negative regulation of proteasomal ubiquitin-dependent protein catabolic process -is_a: GO:0045737 {is_inferred="true"} ! positive regulation of cyclin-dependent protein serine/threonine kinase activity -is_a: GO:2000598 {is_inferred="true"} ! regulation of cyclin catabolic process - -[Term] -id: GO:2000600 ! positive regulation of cyclin catabolic process -is_a: GO:0032436 {is_inferred="true"} ! positive regulation of proteasomal ubiquitin-dependent protein catabolic process -is_a: GO:2000598 {is_inferred="true"} ! regulation of cyclin catabolic process - -[Term] id: GO:2000601 ! positive regulation of Arp2/3 complex-mediated actin nucleation is_a: GO:0034315 {is_inferred="true"} ! regulation of Arp2/3 complex-mediated actin nucleation is_a: GO:0051127 {is_inferred="true"} ! positive regulation of actin nucleation ------------------------------------------------------------------------ r35496 | cjm | 2016-09-12 14:17:39 -0700 (Mon, 12 Sep 2016) | 1 line Fixing #12654 changes in entailments ------------------------------------------------------------------------ r35496 | cjm | 2016-09-12 14:17:39 -0700 (Mon, 12 Sep 2016) | 1 line Fixing #12654 changes in entailments ------------------------------------------------------------------------ r35451 | tberardi | 2016-09-09 16:28:15 -0700 (Fri, 09 Sep 2016) | 1 line GH12619 GO structural problems with reproduction and sorocarp development etc. - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35451) +++ go_inferences.obo (working copy) @@ -20838,11 +20838,6 @@ is_a: GO:1902583 {is_inferred="true"} ! multi-organism intracellular transport [Term] -id: GO:0030587 ! sorocarp development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0030593 ! neutrophil chemotaxis is_a: GO:0071621 {is_inferred="true"} ! granulocyte chemotaxis is_a: GO:1990266 {is_inferred="true"} ! neutrophil migration @@ -21822,28 +21817,15 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0031152 ! aggregation involved in sorocarp development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] -id: GO:0031153 ! slug development involved in sorocarp development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] -id: GO:0031154 ! culmination involved in sorocarp development -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] -id: GO:0031155 ! regulation of fruiting body development +id: GO:0031155 ! regulation of reproductive fruiting body development is_a: GO:0075260 {is_inferred="true"} ! regulation of spore-bearing organ development [Term] id: GO:0031156 ! regulation of sorocarp development is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0031155 {is_inferred="true"} ! regulation of fruiting body development is_a: GO:0032107 {is_inferred="true"} ! regulation of response to nutrient levels is_a: GO:0080135 {is_inferred="true"} ! regulation of cellular response to stress -is_a: GO:1903664 {is_inferred="true"} ! regulation of asexual reproduction +is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] id: GO:0031161 ! phosphatidylinositol catabolic process @@ -22033,6 +22015,7 @@ id: GO:0031285 ! regulation of sorocarp stalk cell differentiation is_a: GO:0031156 {is_inferred="true"} ! regulation of sorocarp development is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] id: GO:0031286 ! negative regulation of sorocarp stalk cell differentiation @@ -22039,7 +22022,6 @@ is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0031285 {is_inferred="true"} ! regulation of sorocarp stalk cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:1903665 {is_inferred="true"} ! negative regulation of asexual reproduction [Term] id: GO:0031287 ! positive regulation of sorocarp stalk cell differentiation @@ -22046,13 +22028,8 @@ is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication is_a: GO:0031285 {is_inferred="true"} ! regulation of sorocarp stalk cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:1903666 {is_inferred="true"} ! positive regulation of asexual reproduction [Term] -id: GO:0031288 ! sorocarp morphogenesis -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process - -[Term] id: GO:0031292 ! gene conversion at mating-type locus, DNA double-strand break processing is_a: GO:0000729 {is_inferred="true"} ! DNA double-strand break processing is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -57185,7 +57162,7 @@ [Term] id: GO:0075268 ! regulation of aecium development -is_a: GO:0031155 {is_inferred="true"} ! regulation of fruiting body development +is_a: GO:0031155 {is_inferred="true"} ! regulation of reproductive fruiting body development [Term] id: GO:0075269 ! positive regulation of aecium development @@ -69240,6 +69217,7 @@ id: GO:1901261 ! regulation of sorocarp spore cell differentiation is_a: GO:0031156 {is_inferred="true"} ! regulation of sorocarp development is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] id: GO:1901262 ! negative regulation of sorocarp spore cell differentiation @@ -69246,9 +69224,9 @@ is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0032108 {is_inferred="true"} ! negative regulation of response to nutrient levels is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0075262 {is_inferred="true"} ! negative regulation of spore-bearing organ development +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1901261 {is_inferred="true"} ! regulation of sorocarp spore cell differentiation -is_a: GO:1903665 {is_inferred="true"} ! negative regulation of asexual reproduction +is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:1901263 ! positive regulation of sorocarp spore cell differentiation @@ -69255,9 +69233,9 @@ is_a: GO:0010647 {is_inferred="true"} ! positive regulation of cell communication is_a: GO:0032109 {is_inferred="true"} ! positive regulation of response to nutrient levels is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0075261 {is_inferred="true"} ! positive regulation of spore-bearing organ development +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1901261 {is_inferred="true"} ! regulation of sorocarp spore cell differentiation -is_a: GO:1903666 {is_inferred="true"} ! positive regulation of asexual reproduction +is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] id: GO:1901264 ! carbohydrate derivative transport @@ -73258,7 +73236,7 @@ [Term] id: GO:1902058 ! regulation of sporocarp development involved in sexual reproduction -is_a: GO:0031155 {is_inferred="true"} ! regulation of fruiting body development +is_a: GO:0031155 {is_inferred="true"} ! regulation of reproductive fruiting body development is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process [Term] ------------------------------------------------------------------------ r35448 | dph | 2016-09-09 11:41:24 -0700 (Fri, 09 Sep 2016) | 2 lines GH12639-closed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35448) +++ go_inferences.obo (working copy) @@ -4641,7 +4641,7 @@ is_a: GO:0003380 {is_inferred="true"} ! establishment or maintenance of cytoskeleton polarity involved in gastrulation [Term] -id: GO:0003375 ! regulation of dynamin polymerization involved in membrane fission +id: GO:0003375 ! regulation of dynamin family protein polymerization involved in membrane fission is_a: GO:0032271 {is_inferred="true"} ! regulation of protein polymerization [Term] ------------------------------------------------------------------------ r35446 | dph | 2016-09-09 11:02:36 -0700 (Fri, 09 Sep 2016) | 2 lines GH12526-closed changes in entailments ------------------------------------------------------------------------ r35444 | dph | 2016-09-09 10:31:31 -0700 (Fri, 09 Sep 2016) | 2 lines GH12635-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35444) +++ go_inferences.obo (working copy) @@ -51220,6 +51220,11 @@ is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] +id: GO:0061792 ! secretory granule maturation +is_a: GO:0021700 {is_inferred="true"} ! developmental maturation +is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport @@ -90109,6 +90114,10 @@ is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] +id: GO:1990502 ! dense core granule maturation +is_a: GO:0061792 {is_inferred="true"} ! secretory granule maturation + +[Term] id: GO:1990503 ! dendritic lamellar body is_a: GO:0044463 {is_inferred="true"} ! cell projection part is_a: GO:0097458 {is_inferred="true"} ! neuron part ------------------------------------------------------------------------ r35442 | dph | 2016-09-09 10:20:38 -0700 (Fri, 09 Sep 2016) | 2 lines GH12641-closed changes in entailments ------------------------------------------------------------------------ r35440 | dph | 2016-09-09 08:50:21 -0700 (Fri, 09 Sep 2016) | 2 lines Removed whitespace in synonyms of commited termgenie term, response to glycine. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35440) +++ go_inferences.obo (working copy) @@ -89564,6 +89564,10 @@ is_a: GO:0097724 {is_inferred="true"} ! sperm flagellum movement [Term] +id: GO:1905420 ! vascular smooth muscle cell differentiation involved in phenotypic switching +is_a: GO:0035886 {is_inferred="true"} ! vascular smooth muscle cell differentiation + +[Term] id: GO:1905421 ! regulation of plant organ morphogenesis is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -89606,6 +89610,15 @@ is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis [Term] +id: GO:1905429 ! response to glycine +is_a: GO:0043200 {is_inferred="true"} ! response to amino acid + +[Term] +id: GO:1905430 ! cellular response to glycine +is_a: GO:0071230 {is_inferred="true"} ! cellular response to amino acid stimulus +is_a: GO:1905429 {is_inferred="true"} ! response to glycine + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35436 | davidos | 2016-09-09 08:22:05 -0700 (Fri, 09 Sep 2016) | 4 lines Fixes final issue in: changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35436) +++ go_inferences.obo (working copy) @@ -69137,7 +69137,7 @@ is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity [Term] -id: GO:1901242 ! doxorubicin transmembrane-transporting ATPase activity +id: GO:1901242 ! ATPase-coupled doxorubicin transmembrane transporter activity is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances is_a: GO:1901505 {is_inferred="true"} ! carbohydrate derivative transporter activity @@ -70475,7 +70475,7 @@ is_a: GO:0022857 {is_inferred="true"} ! transmembrane transporter activity [Term] -id: GO:1901514 ! lipo-chitin oligosaccharide transmembrane-transporting ATPase activity +id: GO:1901514 ! ATPase-coupled lipo-chitin oligosaccharide transmembrane transporter activity is_a: GO:0042626 {is_inferred="true"} ! ATPase activity, coupled to transmembrane movement of substances is_a: GO:1901513 {is_inferred="true"} ! lipo-chitin oligosaccharide transmembrane transporter activity ------------------------------------------------------------------------ r35420 | dph | 2016-09-08 13:04:41 -0700 (Thu, 08 Sep 2016) | 2 lines GH12647-closed changes in entailments ------------------------------------------------------------------------ r35418 | dph | 2016-09-08 12:40:19 -0700 (Thu, 08 Sep 2016) | 2 lines GH12645-closed again changes in entailments ------------------------------------------------------------------------ r35415 | dph | 2016-09-08 12:26:43 -0700 (Thu, 08 Sep 2016) | 2 lines GH12648-closed changes in entailments ------------------------------------------------------------------------ r35414 | dph | 2016-09-08 12:21:20 -0700 (Thu, 08 Sep 2016) | 2 lines GH12649-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35414) +++ go_inferences.obo (working copy) @@ -88064,15 +88064,15 @@ is_a: GO:2000504 {is_inferred="true"} ! positive regulation of blood vessel remodeling [Term] -id: GO:1905112 ! regulation of centromere clustering at the nuclear envelope +id: GO:1905112 ! regulation of centromere clustering at the mitotic nuclear envelope is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] -id: GO:1905113 ! positive regulation of centromere clustering at the nuclear envelope +id: GO:1905113 ! positive regulation of centromere clustering at the mitotic nuclear envelope is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization -is_a: GO:1905112 {is_inferred="true"} ! regulation of centromere clustering at the nuclear envelope +is_a: GO:1905112 {is_inferred="true"} ! regulation of centromere clustering at the mitotic nuclear envelope [Term] id: GO:1905114 ! cell surface receptor signaling pathway involved in cell-cell signaling ------------------------------------------------------------------------ r35412 | termgenie | 2016-09-08 10:40:20 -0700 (Thu, 08 Sep 2016) | 7 lines TermGenie commit for user: sp reviewed by dos changes in entailments ------------------------------------------------------------------------ r35404 | dph | 2016-09-07 14:03:43 -0700 (Wed, 07 Sep 2016) | 2 lines GH12436-closed. changes in entailments ------------------------------------------------------------------------ r35402 | termgenie | 2016-09-07 11:59:51 -0700 (Wed, 07 Sep 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35402) +++ go_inferences.obo (working copy) @@ -89602,6 +89602,10 @@ is_a: GO:0035556 {is_inferred="true"} ! intracellular signal transduction [Term] +id: GO:1905428 ! regulation of plant organ formation +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -90728,6 +90732,7 @@ [Term] id: GO:2000025 ! regulation of leaf formation is_a: GO:1901371 {is_inferred="true"} ! regulation of leaf morphogenesis +is_a: GO:1905428 {is_inferred="true"} ! regulation of plant organ formation [Term] id: GO:2000026 ! regulation of multicellular organismal development @@ -90762,6 +90767,7 @@ id: GO:2000032 ! regulation of secondary shoot formation is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure is_a: GO:1900618 {is_inferred="true"} ! regulation of shoot system morphogenesis +is_a: GO:1905428 {is_inferred="true"} ! regulation of plant organ formation [Term] id: GO:2000033 ! regulation of seed dormancy process ------------------------------------------------------------------------ r35399 | termgenie | 2016-09-07 11:18:06 -0700 (Wed, 07 Sep 2016) | 2 lines TermGenie commit for user: dph reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35399) +++ go_inferences.obo (working copy) @@ -89598,6 +89598,10 @@ is_a: GO:1905424 {is_inferred="true"} ! regulation of Wnt-mediated midbrain dopaminergic neuron differentiation [Term] +id: GO:1905427 ! intracellular signal transduction involved in positive regulation of cell growth +is_a: GO:0035556 {is_inferred="true"} ! intracellular signal transduction + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35395 | dph | 2016-09-07 08:23:38 -0700 (Wed, 07 Sep 2016) | 2 lines Made cohesin loading an subtype of positive regulation of DNA binding. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35395) +++ go_inferences.obo (working copy) @@ -55307,6 +55307,7 @@ [Term] id: GO:0071922 ! regulation of cohesin loading is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion +is_a: GO:0051101 {is_inferred="true"} ! regulation of DNA binding is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] ------------------------------------------------------------------------ r35393 | dph | 2016-09-07 07:10:13 -0700 (Wed, 07 Sep 2016) | 2 lines Removed MF is_a parent from cohesin loading. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35393) +++ go_inferences.obo (working copy) @@ -89178,6 +89178,7 @@ [Term] id: GO:1905338 ! negative regulation of cohesin unloading +is_a: GO:0043388 {is_inferred="true"} ! positive regulation of DNA binding is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process is_a: GO:1905343 {is_inferred="true"} ! regulation of cohesin unloading @@ -89204,6 +89205,7 @@ [Term] id: GO:1905343 ! regulation of cohesin unloading is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion +is_a: GO:0051101 {is_inferred="true"} ! regulation of DNA binding [Term] id: GO:1905344 ! prostaglandin catabolic process ------------------------------------------------------------------------ r35390 | termgenie | 2016-09-07 06:18:18 -0700 (Wed, 07 Sep 2016) | 4 lines TermGenie commit for user: bf reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35390) +++ go_inferences.obo (working copy) @@ -89578,6 +89578,23 @@ is_a: GO:1905421 {is_inferred="true"} ! regulation of plant organ morphogenesis [Term] +id: GO:1905424 ! regulation of Wnt-mediated midbrain dopaminergic neuron differentiation +is_a: GO:0030111 {is_inferred="true"} ! regulation of Wnt signaling pathway +is_a: GO:1904956 {is_inferred="true"} ! regulation of midbrain dopaminergic neuron differentiation + +[Term] +id: GO:1905425 ! negative regulation of Wnt-mediated midbrain dopaminergic neuron differentiation +is_a: GO:0030178 {is_inferred="true"} ! negative regulation of Wnt signaling pathway +is_a: GO:1904957 {is_inferred="true"} ! negative regulation of midbrain dopaminergic neuron differentiation +is_a: GO:1905424 {is_inferred="true"} ! regulation of Wnt-mediated midbrain dopaminergic neuron differentiation + +[Term] +id: GO:1905426 ! positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation +is_a: GO:0030177 {is_inferred="true"} ! positive regulation of Wnt signaling pathway +is_a: GO:1904958 {is_inferred="true"} ! positive regulation of midbrain dopaminergic neuron differentiation +is_a: GO:1905424 {is_inferred="true"} ! regulation of Wnt-mediated midbrain dopaminergic neuron differentiation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35382 | tberardi | 2016-09-06 17:48:06 -0700 (Tue, 06 Sep 2016) | 6 lines Closes changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35382) +++ go_inferences.obo (working copy) @@ -57292,10 +57292,6 @@ is_a: GO:0075298 {is_inferred="true"} ! regulation of zygospore formation [Term] -id: GO:0075301 ! cell differentiation involved in spore germination -is_a: GO:0030154 {is_inferred="true"} ! cell differentiation - -[Term] id: GO:0075302 ! regulation of basidiospore formation is_a: GO:0043940 {is_inferred="true"} ! regulation of sexual sporulation resulting in formation of a cellular spore ------------------------------------------------------------------------ r35380 | termgenie | 2016-09-06 16:24:25 -0700 (Tue, 06 Sep 2016) | 4 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35380) +++ go_inferences.obo (working copy) @@ -11339,15 +11339,15 @@ id: GO:0010059 ! positive regulation of atrichoblast fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation +is_a: GO:1905423 {is_inferred="true"} ! positive regulation of plant organ morphogenesis [Term] id: GO:0010060 ! negative regulation of atrichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation +is_a: GO:1905422 {is_inferred="true"} ! negative regulation of plant organ morphogenesis [Term] id: GO:0010061 ! regulation of trichoblast fate specification @@ -11359,15 +11359,15 @@ id: GO:0010062 ! negative regulation of trichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation +is_a: GO:1905422 {is_inferred="true"} ! negative regulation of plant organ morphogenesis [Term] id: GO:0010063 ! positive regulation of trichoblast fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation +is_a: GO:1905423 {is_inferred="true"} ! positive regulation of plant organ morphogenesis [Term] id: GO:0010069 ! zygote asymmetric cytokinesis in embryo sac @@ -58030,7 +58030,7 @@ [Term] id: GO:0090015 ! positive regulation of leaflet formation by auxin mediated signaling pathway -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905423 {is_inferred="true"} ! positive regulation of plant organ morphogenesis [Term] id: GO:0090016 ! regulation of leaflet formation @@ -69779,6 +69779,7 @@ [Term] id: GO:1901371 ! regulation of leaf morphogenesis is_a: GO:1900618 {is_inferred="true"} ! regulation of shoot system morphogenesis +is_a: GO:1905421 {is_inferred="true"} ! regulation of plant organ morphogenesis is_a: GO:2000024 {is_inferred="true"} ! regulation of leaf development [Term] @@ -77237,19 +77238,19 @@ id: GO:1902891 ! negative regulation of root hair elongation is_a: GO:0030308 {is_inferred="true"} ! negative regulation of cell growth is_a: GO:0048640 {is_inferred="true"} ! negative regulation of developmental growth -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1902890 {is_inferred="true"} ! regulation of root hair elongation is_a: GO:1903430 {is_inferred="true"} ! negative regulation of cell maturation is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation +is_a: GO:1905422 {is_inferred="true"} ! negative regulation of plant organ morphogenesis [Term] id: GO:1902892 ! positive regulation of root hair elongation is_a: GO:0030307 {is_inferred="true"} ! positive regulation of cell growth is_a: GO:0048639 {is_inferred="true"} ! positive regulation of developmental growth -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1902890 {is_inferred="true"} ! regulation of root hair elongation is_a: GO:1903431 {is_inferred="true"} ! positive regulation of cell maturation is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation +is_a: GO:1905423 {is_inferred="true"} ! positive regulation of plant organ morphogenesis [Term] id: GO:1902893 ! regulation of pri-miRNA transcription from RNA polymerase II promoter @@ -89564,6 +89565,23 @@ is_a: GO:0097724 {is_inferred="true"} ! sperm flagellum movement [Term] +id: GO:1905421 ! regulation of plant organ morphogenesis +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development + +[Term] +id: GO:1905422 ! negative regulation of plant organ morphogenesis +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905421 {is_inferred="true"} ! regulation of plant organ morphogenesis + +[Term] +id: GO:1905423 ! positive regulation of plant organ morphogenesis +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905421 {is_inferred="true"} ! regulation of plant organ morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -90896,7 +90914,7 @@ [Term] id: GO:2000067 ! regulation of root morphogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:1905421 {is_inferred="true"} ! regulation of plant organ morphogenesis is_a: GO:2000280 {is_inferred="true"} ! regulation of root development [Term] ------------------------------------------------------------------------ r35376 | dph | 2016-09-06 11:35:22 -0700 (Tue, 06 Sep 2016) | 2 lines GH12624-closed changes in entailments ------------------------------------------------------------------------ r35374 | dph | 2016-09-06 11:24:33 -0700 (Tue, 06 Sep 2016) | 2 lines GH12628-closed changes in entailments ------------------------------------------------------------------------ r35372 | dph | 2016-09-06 10:43:20 -0700 (Tue, 06 Sep 2016) | 2 lines Added vesicle fusion with vesicle. changes in entailments ------------------------------------------------------------------------ r35370 | paola | 2016-09-06 05:55:23 -0700 (Tue, 06 Sep 2016) | 2 lines GH smn protein complex #12595 - closed - added link ‘SMN-Sm protein complex’ has_part ‘SMN complex’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35370) +++ go_inferences.obo (working copy) @@ -2503,6 +2503,7 @@ [Term] id: GO:0002548 ! monocyte chemotaxis +is_a: GO:0071674 {is_inferred="true"} ! mononuclear cell migration is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration [Term] @@ -14004,6 +14005,26 @@ is_a: GO:0048468 {is_inferred="true"} ! cell development [Term] +id: GO:0014032 ! neural crest cell development +is_a: GO:0048864 {is_inferred="true"} ! stem cell development + +[Term] +id: GO:0014033 ! neural crest cell differentiation +is_a: GO:0048863 {is_inferred="true"} ! stem cell differentiation + +[Term] +id: GO:0014034 ! neural crest cell fate commitment +is_a: GO:0048865 {is_inferred="true"} ! stem cell fate commitment + +[Term] +id: GO:0014035 ! neural crest cell fate determination +is_a: GO:0048867 {is_inferred="true"} ! stem cell fate determination + +[Term] +id: GO:0014036 ! neural crest cell fate specification +is_a: GO:0048866 {is_inferred="true"} ! stem cell fate specification + +[Term] id: GO:0014038 ! regulation of Schwann cell differentiation is_a: GO:0045685 {is_inferred="true"} ! regulation of glial cell differentiation @@ -20424,6 +20445,10 @@ is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] +id: GO:0030224 ! monocyte differentiation +is_a: GO:1903131 {is_inferred="true"} ! mononuclear cell differentiation + +[Term] id: GO:0030234 ! enzyme regulator activity is_a: GO:0098772 {is_inferred="true"} ! molecular function regulator @@ -29961,6 +29986,7 @@ [Term] id: GO:0035696 ! monocyte extravasation +is_a: GO:0071674 {is_inferred="true"} ! mononuclear cell migration is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration [Term] @@ -29973,6 +29999,7 @@ [Term] id: GO:0035703 ! monocyte migration into blood stream +is_a: GO:0071674 {is_inferred="true"} ! mononuclear cell migration is_a: GO:0097529 {is_inferred="true"} ! myeloid leukocyte migration [Term] @@ -58042,15 +58069,18 @@ [Term] id: GO:0090025 ! regulation of monocyte chemotaxis is_a: GO:0002688 {is_inferred="true"} ! regulation of leukocyte chemotaxis +is_a: GO:0071675 {is_inferred="true"} ! regulation of mononuclear cell migration [Term] id: GO:0090026 ! positive regulation of monocyte chemotaxis is_a: GO:0002690 {is_inferred="true"} ! positive regulation of leukocyte chemotaxis +is_a: GO:0071677 {is_inferred="true"} ! positive regulation of mononuclear cell migration is_a: GO:0090025 {is_inferred="true"} ! regulation of monocyte chemotaxis [Term] id: GO:0090027 ! negative regulation of monocyte chemotaxis is_a: GO:0002689 {is_inferred="true"} ! negative regulation of leukocyte chemotaxis +is_a: GO:0071676 {is_inferred="true"} ! negative regulation of mononuclear cell migration is_a: GO:0090025 {is_inferred="true"} ! regulation of monocyte chemotaxis [Term] @@ -88904,20 +88934,20 @@ [Term] id: GO:1905292 ! regulation of neural crest cell differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development +is_a: GO:2000736 {is_inferred="true"} ! regulation of stem cell differentiation [Term] id: GO:1905293 ! negative regulation of neural crest cell differentiation -is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation +is_a: GO:2000737 {is_inferred="true"} ! negative regulation of stem cell differentiation [Term] id: GO:1905294 ! positive regulation of neural crest cell differentiation -is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation +is_a: GO:2000738 {is_inferred="true"} ! positive regulation of stem cell differentiation [Term] id: GO:1905295 ! regulation of neural crest cell fate specification @@ -92793,15 +92823,18 @@ [Term] id: GO:2000437 ! regulation of monocyte extravasation is_a: GO:0002691 {is_inferred="true"} ! regulation of cellular extravasation +is_a: GO:0071675 {is_inferred="true"} ! regulation of mononuclear cell migration [Term] id: GO:2000438 ! negative regulation of monocyte extravasation is_a: GO:0002692 {is_inferred="true"} ! negative regulation of cellular extravasation +is_a: GO:0071676 {is_inferred="true"} ! negative regulation of mononuclear cell migration is_a: GO:2000437 {is_inferred="true"} ! regulation of monocyte extravasation [Term] id: GO:2000439 ! positive regulation of monocyte extravasation is_a: GO:0002693 {is_inferred="true"} ! positive regulation of cellular extravasation +is_a: GO:0071677 {is_inferred="true"} ! positive regulation of mononuclear cell migration is_a: GO:2000437 {is_inferred="true"} ! regulation of monocyte extravasation [Term] ------------------------------------------------------------------------ r35323 | tberardi | 2016-09-02 17:08:44 -0700 (Fri, 02 Sep 2016) | 17 lines Fixed Jenkins detected errors. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35323) +++ go_inferences.obo (working copy) @@ -10269,6 +10269,10 @@ is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] +id: GO:0009336 ! sulfate adenylyltransferase complex (ATP) +is_a: GO:1902503 {is_inferred="true"} ! adenylyltransferase complex + +[Term] id: GO:0009338 ! exodeoxyribonuclease V complex is_a: GO:1902494 {is_inferred="true"} ! catalytic complex @@ -35996,10 +36000,6 @@ is_a: GO:0098927 {is_inferred="true"} ! vesicle-mediated transport between endosomal compartments [Term] -id: GO:0045025 ! mitochondrial degradosome -is_a: GO:0098798 {is_inferred="true"} ! mitochondrial protein complex - -[Term] id: GO:0045033 ! peroxisome inheritance is_a: GO:0048308 {is_inferred="true"} ! organelle inheritance @@ -61940,6 +61940,7 @@ [Term] id: GO:0099513 ! polymeric cytoskeletal fiber is_a: GO:0044430 {is_inferred="true"} ! cytoskeletal part +is_a: GO:0099512 {is_inferred="true"} ! supramolecular fiber [Term] id: GO:0099514 ! synaptic vesicle cytoskeletal transport @@ -89220,7 +89221,7 @@ [Term] id: GO:1905354 ! exoribonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:0032991 {is_inferred="true"} ! macromolecular complex [Term] id: GO:1905355 ! spine apparatus assembly @@ -89500,6 +89501,20 @@ is_a: GO:1905405 {is_inferred="true"} ! regulation of mitotic cohesin loading [Term] +id: GO:1905413 ! regulation of dense core granule exocytosis +is_a: GO:0017158 {is_inferred="true"} ! regulation of calcium ion-dependent exocytosis + +[Term] +id: GO:1905414 ! negative regulation of dense core granule exocytosis +is_a: GO:0045955 {is_inferred="true"} ! negative regulation of calcium ion-dependent exocytosis +is_a: GO:1905413 {is_inferred="true"} ! regulation of dense core granule exocytosis + +[Term] +id: GO:1905415 ! positive regulation of dense core granule exocytosis +is_a: GO:0045956 {is_inferred="true"} ! positive regulation of calcium ion-dependent exocytosis +is_a: GO:1905413 {is_inferred="true"} ! regulation of dense core granule exocytosis + +[Term] id: GO:1905416 ! regulation of amoeboid sperm motility is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility @@ -89514,6 +89529,11 @@ is_a: GO:2000147 {is_inferred="true"} ! positive regulation of cell motility [Term] +id: GO:1905419 ! sperm flagellum movement involved in flagellated sperm motility +is_a: GO:0060294 {is_inferred="true"} ! cilium movement involved in cell motility +is_a: GO:0097724 {is_inferred="true"} ! sperm flagellum movement + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -89665,6 +89685,7 @@ [Term] id: GO:1990133 ! molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex is_a: GO:0044445 {is_inferred="true"} ! cytosolic part +is_a: GO:1902503 {is_inferred="true"} ! adenylyltransferase complex [Term] id: GO:1990139 ! protein localization to nuclear periphery @@ -89790,6 +89811,7 @@ [Term] id: GO:1990235 ! diamine N-acetyltransferase complex is_a: GO:0044445 {is_inferred="true"} ! cytosolic part +is_a: GO:1902493 {is_inferred="true"} ! acetyltransferase complex [Term] id: GO:1990236 ! proteasome core complex import into nucleus ------------------------------------------------------------------------ r35313 | mcourtot | 2016-09-02 07:37:31 -0700 (Fri, 02 Sep 2016) | 1 line added related synonym chromatin modification to fix broken build changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35313) +++ go_inferences.obo (working copy) @@ -13333,6 +13333,7 @@ [Term] id: GO:0010847 ! regulation of chromatin assembly is_a: GO:0001672 {is_inferred="true"} ! regulation of chromatin assembly or disassembly +is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis [Term] @@ -22450,6 +22451,7 @@ id: GO:0031452 ! negative regulation of heterochromatin assembly is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly is_a: GO:0045798 {is_inferred="true"} ! negative regulation of chromatin assembly or disassembly +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:0031453 ! positive regulation of heterochromatin assembly @@ -22456,6 +22458,7 @@ is_a: GO:0031445 {is_inferred="true"} ! regulation of heterochromatin assembly is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0045799 {is_inferred="true"} ! positive regulation of chromatin assembly or disassembly +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:0031455 ! glycine betaine metabolic process @@ -74315,7 +74318,7 @@ [Term] id: GO:1902275 ! regulation of chromatin organization -is_a: GO:0033044 {is_inferred="true"} ! regulation of chromosome organization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1902276 ! regulation of pancreatic amylase secretion @@ -78231,6 +78234,7 @@ is_a: GO:0045798 {is_inferred="true"} ! negative regulation of chromatin assembly or disassembly is_a: GO:1900050 {is_inferred="true"} ! negative regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly +is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:1903099 ! positive regulation of CENP-A containing nucleosome assembly @@ -78238,6 +78242,7 @@ is_a: GO:0045799 {is_inferred="true"} ! positive regulation of chromatin assembly or disassembly is_a: GO:1900051 {is_inferred="true"} ! positive regulation of histone exchange is_a: GO:1903097 {is_inferred="true"} ! regulation of CENP-A containing nucleosome assembly +is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1903100 ! 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process @@ -88771,13 +88776,13 @@ [Term] id: GO:1905268 ! negative regulation of chromatin organization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1902275 {is_inferred="true"} ! regulation of chromatin organization -is_a: GO:2001251 {is_inferred="true"} ! negative regulation of chromosome organization [Term] id: GO:1905269 ! positive regulation of chromatin organization +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1902275 {is_inferred="true"} ! regulation of chromatin organization -is_a: GO:2001252 {is_inferred="true"} ! positive regulation of chromosome organization [Term] id: GO:1905270 ! Meynert cell differentiation ------------------------------------------------------------------------ r35294 | paola | 2016-09-01 06:02:42 -0700 (Thu, 01 Sep 2016) | 3 lines GH placement of "sperm motility" #10905 - work in progress - see ticket for details changes in entailments ------------------------------------------------------------------------ r35292 | termgenie | 2016-09-01 04:33:55 -0700 (Thu, 01 Sep 2016) | 4 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35292) +++ go_inferences.obo (working copy) @@ -89495,6 +89495,20 @@ is_a: GO:1905405 {is_inferred="true"} ! regulation of mitotic cohesin loading [Term] +id: GO:1905416 ! regulation of amoeboid sperm motility +is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility + +[Term] +id: GO:1905417 ! negative regulation of amoeboid sperm motility +is_a: GO:1905416 {is_inferred="true"} ! regulation of amoeboid sperm motility +is_a: GO:2000146 {is_inferred="true"} ! negative regulation of cell motility + +[Term] +id: GO:1905418 ! positive regulation of amoeboid sperm motility +is_a: GO:1905416 {is_inferred="true"} ! regulation of amoeboid sperm motility +is_a: GO:2000147 {is_inferred="true"} ! positive regulation of cell motility + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35290 | paola | 2016-09-01 04:06:12 -0700 (Thu, 01 Sep 2016) | 3 lines GH placement of "sperm motility" #10905 - work in progress - see ticket for details changes in entailments ------------------------------------------------------------------------ r35288 | paola | 2016-09-01 03:53:46 -0700 (Thu, 01 Sep 2016) | 3 lines GH placement of "sperm motility" #10905 - work in progress - see ticket for details changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35288) +++ go_inferences.obo (working copy) @@ -48691,9 +48691,9 @@ is_a: GO:0050867 {is_inferred="true"} ! positive regulation of cell activation [Term] -id: GO:0060474 ! positive regulation of sperm motility involved in capacitation +id: GO:0060474 ! positive regulation of flagellated sperm motility involved in capacitation is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:1902093 {is_inferred="true"} ! positive regulation of sperm motility +is_a: GO:1902093 {is_inferred="true"} ! positive regulation of flagellated sperm motility [Term] id: GO:0060475 ! positive regulation of actin filament polymerization involved in acrosome reaction @@ -69473,12 +69473,12 @@ is_a: GO:1902523 {is_inferred="true"} ! positive regulation of protein K63-linked ubiquitination [Term] -id: GO:1901317 ! regulation of sperm motility +id: GO:1901317 ! regulation of flagellated sperm motility is_a: GO:2000145 {is_inferred="true"} ! regulation of cell motility [Term] -id: GO:1901318 ! negative regulation of sperm motility -is_a: GO:1901317 {is_inferred="true"} ! regulation of sperm motility +id: GO:1901318 ! negative regulation of flagellated sperm motility +is_a: GO:1901317 {is_inferred="true"} ! regulation of flagellated sperm motility is_a: GO:2000146 {is_inferred="true"} ! negative regulation of cell motility [Term] @@ -73403,8 +73403,8 @@ is_a: GO:1902090 {is_inferred="true"} ! regulation of fumagillin biosynthetic process [Term] -id: GO:1902093 ! positive regulation of sperm motility -is_a: GO:1901317 {is_inferred="true"} ! regulation of sperm motility +id: GO:1902093 ! positive regulation of flagellated sperm motility +is_a: GO:1901317 {is_inferred="true"} ! regulation of flagellated sperm motility is_a: GO:2000147 {is_inferred="true"} ! positive regulation of cell motility [Term] ------------------------------------------------------------------------ r35275 | paola | 2016-08-30 05:59:39 -0700 (Tue, 30 Aug 2016) | 2 lines GH NTR: ciliary vesicle #12563 - work in progress - added ‘ciliary vesicle’ changes in entailments ------------------------------------------------------------------------ r35269 | foulger | 2016-08-30 02:34:25 -0700 (Tue, 30 Aug 2016) | 16 lines Added in relationship, based on PMID:27385586: changes in entailments ------------------------------------------------------------------------ r35264 | tberardi | 2016-08-29 15:17:34 -0700 (Mon, 29 Aug 2016) | 1 line GH12578 spore-bearing organs should not be classified as animal organs - incremental progress in separating animal and plant development changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35264) +++ go_inferences.obo (working copy) @@ -11404,8 +11404,11 @@ is_a: GO:0048831 {is_inferred="true"} ! regulation of shoot system development [Term] +id: GO:0010092 ! specification of animal organ identity +is_a: GO:0003002 {is_inferred="true"} ! regionalization + +[Term] id: GO:0010093 ! specification of floral organ identity -is_a: GO:0003002 {is_inferred="true"} ! regionalization is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -59650,6 +59653,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0090701 ! specification of plant organ identity +is_a: GO:0003002 {is_inferred="true"} ! regionalization + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate ------------------------------------------------------------------------ r35262 | tberardi | 2016-08-29 14:27:37 -0700 (Mon, 29 Aug 2016) | 1 line GH12616 correction of merotelic kinetochore attachment, meiosis I - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35262) +++ go_inferences.obo (working copy) @@ -59646,6 +59646,10 @@ is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] +id: GO:0090699 ! correction of merotelic kinetochore attachment, meiosis I +is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate @@ -60913,7 +60917,7 @@ [Term] id: GO:0098783 ! correction of merotelic kinetochore attachment, mitotic -is_a: GO:0022402 {is_inferred="true"} ! cell cycle process +is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:0098784 ! biofilm matrix organization ------------------------------------------------------------------------ r35258 | termgenie | 2016-08-29 09:06:29 -0700 (Mon, 29 Aug 2016) | 2 lines TermGenie commit for user: vw reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35258) +++ go_inferences.obo (working copy) @@ -89478,6 +89478,12 @@ is_a: GO:1905410 {is_inferred="true"} ! regulation of mitotic cohesin unloading [Term] +id: GO:1905412 ! negative regulation of mitotic cohesin loading +is_a: GO:0033048 {is_inferred="true"} ! negative regulation of mitotic sister chromatid segregation +is_a: GO:0071923 {is_inferred="true"} ! negative regulation of cohesin loading +is_a: GO:1905405 {is_inferred="true"} ! regulation of mitotic cohesin loading + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35220 | tberardi | 2016-08-26 15:32:01 -0700 (Fri, 26 Aug 2016) | 1 line GH12617 sysonym for GO:1990501 exon-exon junction subcomplex mago-y14 - closed changes in entailments ------------------------------------------------------------------------ r35184 | davidos | 2016-08-26 07:56:23 -0700 (Fri, 26 Aug 2016) | 1 line added missing genus to GO:0006900 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35185) +++ go_inferences.obo (working copy) @@ -255,8 +255,7 @@ [Term] id: GO:0000101 ! sulfur amino acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0072348 {is_inferred="true"} ! sulfur compound transport [Term] @@ -288,6 +287,10 @@ is_a: GO:0045892 {is_inferred="true"} ! negative regulation of transcription, DNA-templated [Term] +id: GO:0000124 ! SAGA complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex + +[Term] id: GO:0000132 ! establishment of mitotic spindle orientation is_a: GO:0040001 {is_inferred="true"} ! establishment of mitotic spindle localization is_a: GO:0051294 {is_inferred="true"} ! establishment of spindle orientation @@ -699,6 +702,10 @@ is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly [Term] +id: GO:0000502 ! proteasome complex +is_a: GO:1905369 {is_inferred="true"} ! endopeptidase complex + +[Term] id: GO:0000706 ! meiotic DNA double-strand break processing is_a: GO:0000729 {is_inferred="true"} ! DNA double-strand break processing is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -1395,10 +1402,6 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] -id: GO:0001762 ! beta-alanine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport - -[Term] id: GO:0001765 ! membrane raft assembly is_a: GO:0071709 {is_inferred="true"} ! membrane assembly @@ -1836,7 +1839,7 @@ [Term] id: GO:0002018 ! renin-angiotensin regulation of aldosterone production -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000858 {is_inferred="true"} ! regulation of aldosterone secretion [Term] id: GO:0002028 ! regulation of sodium ion transport @@ -1844,6 +1847,7 @@ [Term] id: GO:0002036 ! regulation of L-glutamate transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] @@ -1850,11 +1854,13 @@ id: GO:0002037 ! negative regulation of L-glutamate transport is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0002038 ! positive regulation of L-glutamate transport is_a: GO:0002036 {is_inferred="true"} ! regulation of L-glutamate transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0002044 ! blood vessel endothelial cell migration involved in intussusceptive angiogenesis @@ -3046,7 +3052,6 @@ [Term] id: GO:0002682 ! regulation of immune system process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0002683 ! negative regulation of immune system process @@ -4538,7 +4543,7 @@ [Term] id: GO:0003333 ! amino acid transmembrane transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:1905039 {is_inferred="true"} ! carboxylic acid transmembrane transport [Term] @@ -5175,6 +5180,10 @@ is_a: GO:0044451 {is_inferred="true"} ! nucleoplasm part [Term] +id: GO:0005671 ! Ada2/Gcn5/Ada3 transcription activator complex +is_a: GO:1902562 {is_inferred="true"} ! H4 histone acetyltransferase complex + +[Term] id: GO:0005672 ! transcription factor TFIIA complex is_a: GO:0044451 {is_inferred="true"} ! nucleoplasm part @@ -5229,6 +5238,7 @@ [Term] id: GO:0005745 ! m-AAA complex is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex [Term] id: GO:0005746 ! mitochondrial respiratory chain @@ -5317,8 +5327,9 @@ [Term] id: GO:0005787 ! signal peptidase complex +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex -is_a: GO:1990234 {is_inferred="true"} ! transferase complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex [Term] id: GO:0005788 ! endoplasmic reticulum lumen @@ -7818,12 +7829,10 @@ [Term] id: GO:0006792 ! regulation of sulfur utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0006795 ! regulation of phosphorus utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0006796 ! phosphate-containing compound metabolic process @@ -7855,7 +7864,6 @@ [Term] id: GO:0006808 ! regulation of nitrogen utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0006809 ! nitric oxide biosynthetic process @@ -7989,10 +7997,18 @@ [Term] id: GO:0006865 ! amino acid transport -is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0015849 {is_inferred="true"} ! organic acid transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] +id: GO:0006867 ! asparagine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] +id: GO:0006868 ! glutamine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0006869 ! lipid transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport @@ -10319,6 +10335,10 @@ is_a: GO:1990204 {is_inferred="true"} ! oxidoreductase complex [Term] +id: GO:0009376 ! HslUV protease complex +is_a: GO:1904949 {is_inferred="true"} ! ATPase complex + +[Term] id: GO:0009379 ! Holliday junction helicase complex is_a: GO:0033202 {is_inferred="true"} ! DNA helicase complex @@ -12369,6 +12389,7 @@ [Term] id: GO:0010585 ! glutamine secretion is_a: GO:0006868 {is_inferred="true"} ! glutamine transport +is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] id: GO:0010588 ! cotyledon vascular tissue pattern formation @@ -13159,7 +13180,7 @@ [Term] id: GO:0010806 ! negative regulation of lysine import is_a: GO:0010805 {is_inferred="true"} ! regulation of lysine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport [Term] id: GO:0010807 ! regulation of synaptic vesicle priming @@ -13737,7 +13758,7 @@ [Term] id: GO:0010958 ! regulation of amino acid import -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport +is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:0010959 ! regulation of metal ion transport @@ -14037,20 +14058,20 @@ [Term] id: GO:0014052 ! regulation of gamma-aminobutyric acid secretion +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051046 {is_inferred="true"} ! regulation of secretion -is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:0014053 ! negative regulation of gamma-aminobutyric acid secretion is_a: GO:0014052 {is_inferred="true"} ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051048 {is_inferred="true"} ! negative regulation of secretion -is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0014054 ! positive regulation of gamma-aminobutyric acid secretion is_a: GO:0014052 {is_inferred="true"} ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051047 {is_inferred="true"} ! positive regulation of secretion -is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0014056 ! regulation of acetylcholine secretion, neurotransmission @@ -14368,6 +14389,7 @@ [Term] id: GO:0014861 ! regulation of skeletal muscle contraction via regulation of action potential +is_a: GO:0014819 {is_inferred="true"} ! regulation of skeletal muscle contraction is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] @@ -15730,13 +15752,11 @@ [Term] id: GO:0015801 ! aromatic amino acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0015803 ! branched-chain amino acid transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0015805 ! S-adenosyl-L-methionine transport @@ -15748,7 +15768,8 @@ [Term] id: GO:0015807 ! L-amino acid transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015808 ! L-alanine transport @@ -15756,6 +15777,10 @@ is_a: GO:0032328 {is_inferred="true"} ! alanine transport [Term] +id: GO:0015809 ! arginine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015810 ! aspartate transport is_a: GO:0015740 {is_inferred="true"} ! C4-dicarboxylate transport @@ -15766,7 +15791,8 @@ [Term] id: GO:0015812 ! gamma-aminobutyric acid transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015813 ! L-glutamate transport @@ -15778,26 +15804,53 @@ is_a: GO:0006835 {is_inferred="true"} ! dicarboxylic acid transport [Term] +id: GO:0015816 ! glycine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] +id: GO:0015817 ! histidine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015818 ! isoleucine transport is_a: GO:0015803 {is_inferred="true"} ! branched-chain amino acid transport [Term] +id: GO:0015819 ! lysine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] +id: GO:0015820 ! leucine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015821 ! methionine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015822 ! ornithine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0015823 ! phenylalanine transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] +id: GO:0015824 ! proline transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015825 ! L-serine transport is_a: GO:0015807 {is_inferred="true"} ! L-amino acid transport [Term] +id: GO:0015826 ! threonine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015827 ! tryptophan transport is_a: GO:0015801 {is_inferred="true"} ! aromatic amino acid transport @@ -15806,9 +15859,12 @@ is_a: GO:0015801 {is_inferred="true"} ! aromatic amino acid transport [Term] +id: GO:0015829 ! valine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0015830 ! diaminopimelate transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0015833 ! peptide transport @@ -17712,7 +17768,6 @@ [Term] id: GO:0019222 ! regulation of metabolic process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0019229 ! regulation of vasoconstriction @@ -19987,7 +20042,6 @@ [Term] id: GO:0023051 ! regulation of signaling is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0023056 ! positive regulation of signaling @@ -20191,7 +20245,6 @@ [Term] id: GO:0030155 ! regulation of cell adhesion is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0030162 ! regulation of proteolysis @@ -21626,6 +21679,10 @@ is_a: GO:0031066 {is_inferred="true"} ! regulation of histone deacetylation at centromere [Term] +id: GO:0031082 ! BLOC complex +is_a: GO:0044445 {is_inferred="true"} ! cytosolic part + +[Term] id: GO:0031095 ! platelet dense tubular network membrane is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle @@ -22131,7 +22188,6 @@ [Term] id: GO:0031341 ! regulation of cell killing is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0031342 ! negative regulation of cell killing @@ -23858,8 +23914,8 @@ is_a: GO:0042046 {is_inferred="true"} ! W-molybdopterin cofactor metabolic process [Term] -id: GO:0032329 ! serine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +id: GO:0032328 ! alanine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] id: GO:0032330 ! regulation of chondrocyte differentiation @@ -25528,7 +25584,6 @@ [Term] id: GO:0032879 ! regulation of localization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0032880 ! regulation of protein localization @@ -25862,8 +25917,7 @@ [Term] id: GO:0032973 ! amino acid export -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0032974 ! amino acid transmembrane export from vacuole @@ -28599,23 +28653,13 @@ id: GO:0034488 ! basic amino acid transmembrane export from vacuole is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0034489 ! neutral amino acid transmembrane export from vacuole is_a: GO:0015804 {is_inferred="true"} ! neutral amino acid transport is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] -id: GO:0034490 ! basic amino acid transmembrane import into vacuole -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport - -[Term] -id: GO:0034491 ! neutral amino acid transmembrane import into vacuole -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport - -[Term] id: GO:0034496 ! multivesicular body membrane disassembly is_a: GO:0030397 {is_inferred="true"} ! membrane disassembly @@ -28651,7 +28695,7 @@ [Term] id: GO:0034589 ! hydroxyproline transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0072337 {is_inferred="true"} ! modified amino acid transport [Term] @@ -29221,6 +29265,10 @@ is_a: GO:0048589 {is_inferred="true"} ! developmental growth [Term] +id: GO:0035267 ! NuA4 histone acetyltransferase complex +is_a: GO:0043189 {is_inferred="true"} ! H4/H2A histone acetyltransferase complex + +[Term] id: GO:0035273 ! phthalate binding is_a: GO:0031406 {is_inferred="true"} ! carboxylic acid binding is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding @@ -31179,12 +31227,10 @@ [Term] id: GO:0040008 ! regulation of growth is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0040012 ! regulation of locomotion is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0040013 ! negative regulation of locomotion @@ -32853,7 +32899,6 @@ [Term] id: GO:0042752 ! regulation of circadian rhythm is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0042753 ! positive regulation of circadian rhythm @@ -33361,7 +33406,8 @@ [Term] id: GO:0042940 ! D-amino acid transport -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0042941 ! D-alanine transport @@ -33433,6 +33479,10 @@ is_a: GO:0015159 {is_inferred="true"} ! polysaccharide transmembrane transporter activity [Term] +id: GO:0042968 ! homoserine transport +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport + +[Term] id: GO:0042969 ! lactone transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport @@ -33656,8 +33706,7 @@ [Term] id: GO:0043090 ! amino acid import -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:0043091 ! L-arginine import @@ -34761,12 +34810,10 @@ [Term] id: GO:0043609 ! regulation of carbon utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0043610 ! regulation of carbohydrate utilization is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0043611 ! isoprene metabolic process @@ -34984,7 +35031,6 @@ [Term] id: GO:0043900 ! regulation of multi-organism process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0043901 ! negative regulation of multi-organism process @@ -35160,10 +35206,6 @@ is_a: GO:0043269 {is_inferred="true"} ! regulation of ion transport [Term] -id: GO:0044087 ! regulation of cellular component biogenesis -is_a: GO:0065007 {is_inferred="true"} ! biological regulation - -[Term] id: GO:0044088 ! regulation of vacuole organization is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization @@ -35595,6 +35637,10 @@ is_a: GO:0015849 {is_inferred="true"} ! organic acid transport [Term] +id: GO:0044545 ! NSL complex +is_a: GO:1902562 {is_inferred="true"} ! H4 histone acetyltransferase complex + +[Term] id: GO:0044552 ! modulation of vasodilation in other organism is_a: GO:0044706 {is_inferred="true"} ! multi-multicellular organism process @@ -38156,12 +38202,10 @@ [Term] id: GO:0045759 ! negative regulation of action potential -is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] id: GO:0045760 ! positive regulation of action potential -is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] @@ -42195,7 +42239,6 @@ [Term] id: GO:0048070 ! regulation of developmental pigmentation is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0048071 ! sex-specific pigmentation @@ -42901,12 +42944,10 @@ [Term] id: GO:0048518 ! positive regulation of biological process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0048519 ! negative regulation of biological process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0048520 ! positive regulation of behavior @@ -43035,7 +43076,6 @@ [Term] id: GO:0048583 ! regulation of response to stimulus is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0048584 ! positive regulation of response to stimulus @@ -44092,10 +44132,6 @@ is_a: GO:0061687 {is_inferred="true"} ! detoxification of inorganic compound [Term] -id: GO:0050789 ! regulation of biological process -is_a: GO:0008150 {is_inferred="true"} ! biological_process - -[Term] id: GO:0050790 ! regulation of catalytic activity is_a: GO:0065009 {is_inferred="true"} ! regulation of molecular function @@ -44107,17 +44143,14 @@ [Term] id: GO:0050793 ! regulation of developmental process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0050794 ! regulation of cellular process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0050795 ! regulation of behavior is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0050796 ! regulation of insulin secretion @@ -45262,7 +45295,6 @@ [Term] id: GO:0051239 ! regulation of multicellular organismal process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:0051240 ! positive regulation of multicellular organismal process @@ -46874,8 +46906,8 @@ [Term] id: GO:0051938 ! L-glutamate import -is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0043090 {is_inferred="true"} ! amino acid import +is_a: GO:0046942 {is_inferred="true"} ! carboxylic acid transport [Term] id: GO:0051939 ! gamma-aminobutyric acid import @@ -46894,15 +46926,15 @@ [Term] id: GO:0051942 ! negative regulation of amino acid uptake involved in synaptic transmission -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0051581 {is_inferred="true"} ! negative regulation of neurotransmitter uptake is_a: GO:0051941 {is_inferred="true"} ! regulation of amino acid uptake involved in synaptic transmission +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport [Term] id: GO:0051943 ! positive regulation of amino acid uptake involved in synaptic transmission -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:0051582 {is_inferred="true"} ! positive regulation of neurotransmitter uptake is_a: GO:0051941 {is_inferred="true"} ! regulation of amino acid uptake involved in synaptic transmission +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport [Term] id: GO:0051944 ! positive regulation of catecholamine uptake involved in synaptic transmission @@ -46961,17 +46993,17 @@ [Term] id: GO:0051955 ! regulation of amino acid transport -is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport +is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport [Term] id: GO:0051956 ! negative regulation of amino acid transport +is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport -is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:0051957 ! positive regulation of amino acid transport +is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport -is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:0051958 ! methotrexate transport @@ -48377,7 +48409,7 @@ [Term] id: GO:0060358 ! negative regulation of leucine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import [Term] @@ -49121,7 +49153,8 @@ [Term] id: GO:0060657 ! regulation of mammary gland cord elongation by mammary fat precursor cell-epithelial cell signaling -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth +is_a: GO:0060762 {is_inferred="true"} ! regulation of branching involved in mammary gland duct morphogenesis [Term] id: GO:0060660 ! epidermis morphogenesis involved in nipple formation @@ -50933,6 +50966,7 @@ [Term] id: GO:0061528 ! aspartate secretion is_a: GO:0015810 {is_inferred="true"} ! aspartate transport +is_a: GO:0046717 {is_inferred="true"} ! acid secretion [Term] id: GO:0061531 ! primary amine secretion @@ -50940,9 +50974,8 @@ [Term] id: GO:0061536 ! glycine secretion -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0046717 {is_inferred="true"} ! acid secretion -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] id: GO:0061539 ! octopamine secretion @@ -52091,6 +52124,10 @@ is_a: GO:0009306 {is_inferred="true"} ! protein secretion [Term] +id: GO:0070461 ! SAGA-type complex +is_a: GO:0000123 {is_inferred="true"} ! histone acetyltransferase complex + +[Term] id: GO:0070464 ! alphav-beta3 integrin-collagen alpha3(VI) complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -52513,7 +52550,7 @@ [Term] id: GO:0070676 ! intralumenal vesicle formation -is_a: GO:0006900 {is_inferred="true"} ! membrane budding +is_a: GO:0007032 {is_inferred="true"} ! endosome organization [Term] id: GO:0070689 ! L-threonine catabolic process to propionate @@ -52642,6 +52679,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0070775 ! H3 histone acetyltransferase complex +is_a: GO:0000123 {is_inferred="true"} ! histone acetyltransferase complex + +[Term] id: GO:0070777 ! D-aspartate transport is_a: GO:0015810 {is_inferred="true"} ! aspartate transport @@ -52908,6 +52949,7 @@ [Term] id: GO:0070881 ! regulation of proline transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] @@ -55022,11 +55064,13 @@ [Term] id: GO:0071809 ! regulation of fever generation by regulation of prostaglandin biosynthesis -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031392 {is_inferred="true"} ! regulation of prostaglandin biosynthetic process +is_a: GO:0031620 {is_inferred="true"} ! regulation of fever generation [Term] id: GO:0071810 ! regulation of fever generation by regulation of prostaglandin secretion -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031620 {is_inferred="true"} ! regulation of fever generation +is_a: GO:0032306 {is_inferred="true"} ! regulation of prostaglandin secretion [Term] id: GO:0071811 ! positive regulation of fever generation by positive regulation of prostaglandin biosynthesis @@ -55202,6 +55246,7 @@ [Term] id: GO:0071898 ! regulation of estrogen receptor binding is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900120 {is_inferred="true"} ! regulation of receptor binding [Term] id: GO:0071899 ! negative regulation of estrogen receptor binding @@ -56227,6 +56272,10 @@ is_a: GO:0072416 {is_inferred="true"} ! signal transduction involved in spindle checkpoint [Term] +id: GO:0072487 ! MSL complex +is_a: GO:1902562 {is_inferred="true"} ! H4 histone acetyltransferase complex + +[Term] id: GO:0072488 ! ammonium transmembrane transport is_a: GO:0015696 {is_inferred="true"} ! ammonium transport is_a: GO:0098655 {is_inferred="true"} ! cation transmembrane transport @@ -57518,10 +57567,6 @@ is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process [Term] -id: GO:0080143 ! regulation of amino acid export -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport - -[Term] id: GO:0080144 ! amino acid homeostasis is_a: GO:0048878 {is_inferred="true"} ! chemical homeostasis @@ -57850,12 +57895,12 @@ [Term] id: GO:0089703 ! L-aspartate transmembrane export from vacuole -is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0089712 {is_inferred="true"} ! L-aspartate transmembrane transport [Term] id: GO:0089704 ! L-glutamate transmembrane export from vacuole -is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0089711 {is_inferred="true"} ! L-glutamate transmembrane transport [Term] @@ -57885,10 +57930,12 @@ [Term] id: GO:0089711 ! L-glutamate transmembrane transport +is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0089712 ! L-aspartate transmembrane transport +is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] @@ -59090,7 +59137,9 @@ [Term] id: GO:0090326 ! positive regulation of locomotion involved in locomotory behavior -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0040017 {is_inferred="true"} ! positive regulation of locomotion +is_a: GO:0048520 {is_inferred="true"} ! positive regulation of behavior +is_a: GO:0090325 {is_inferred="true"} ! regulation of locomotion involved in locomotory behavior [Term] id: GO:0090327 ! negative regulation of locomotion involved in locomotory behavior @@ -59396,7 +59445,7 @@ [Term] id: GO:0090453 ! aspartate transmembrane import into vacuole is_a: GO:0015810 {is_inferred="true"} ! aspartate transport -is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] @@ -60756,7 +60805,6 @@ id: GO:0098718 ! serine import across plasma membrane is_a: GO:0061491 {is_inferred="true"} ! serine import into cell is_a: GO:0089718 {is_inferred="true"} ! amino acid import across plasma membrane -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0098719 ! sodium ion import across plasma membrane @@ -60865,8 +60913,7 @@ [Term] id: GO:0098783 ! correction of merotelic kinetochore attachment, mitotic -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process +is_a: GO:0022402 {is_inferred="true"} ! cell cycle process [Term] id: GO:0098784 ! biofilm matrix organization @@ -61139,14 +61186,11 @@ [Term] id: GO:0098884 ! postsynaptic neurotransmitter receptor internalization -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell -is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse +is_a: GO:0099590 {is_inferred="true"} ! neurotransmitter receptor internalization [Term] id: GO:0098887 ! neurotransmitter receptor transport, endosome to postsynaptic membrane -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0098969 {is_inferred="true"} ! neurotransmitter receptor transport to postsynaptic membrane -is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse is_a: GO:0099639 {is_inferred="true"} ! neurotransmitter receptor transport, endosome to plasma membrane [Term] @@ -61210,46 +61254,59 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] +id: GO:0098900 ! regulation of action potential +is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential + +[Term] id: GO:0098901 ! regulation of cardiac muscle cell action potential is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] id: GO:0098902 ! regulation of membrane depolarization during action potential +is_a: GO:0003254 {is_inferred="true"} ! regulation of membrane depolarization is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] id: GO:0098903 ! regulation of membrane repolarization during action potential +is_a: GO:0060306 {is_inferred="true"} ! regulation of membrane repolarization is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] id: GO:0098904 ! regulation of AV node cell action potential +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential +is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction [Term] id: GO:0098905 ! regulation of bundle of His cell action potential +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential +is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction [Term] id: GO:0098906 ! regulation of Purkinje myocyte action potential +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential +is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction [Term] id: GO:0098907 ! regulation of SA node cell action potential +is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential +is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction [Term] id: GO:0098908 ! regulation of neuronal action potential +is_a: GO:0051969 {is_inferred="true"} ! regulation of transmission of nerve impulse is_a: GO:0098900 {is_inferred="true"} ! regulation of action potential [Term] id: GO:0098909 ! regulation of cardiac muscle cell action potential involved in regulation of contraction -is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential [Term] id: GO:0098910 ! regulation of atrial cardiac muscle cell action potential is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication -is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential is_a: GO:0086004 {is_inferred="true"} ! regulation of cardiac muscle cell contraction is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction @@ -61256,7 +61313,6 @@ [Term] id: GO:0098911 ! regulation of ventricular cardiac muscle cell action potential -is_a: GO:0042391 {is_inferred="true"} ! regulation of membrane potential is_a: GO:0086004 {is_inferred="true"} ! regulation of cardiac muscle cell contraction is_a: GO:0098901 {is_inferred="true"} ! regulation of cardiac muscle cell action potential @@ -61367,7 +61423,6 @@ id: GO:0098943 ! neurotransmitter receptor transport, postsynaptic endosome to lysosome is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport is_a: GO:0016197 {is_inferred="true"} ! endosomal transport -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0061462 {is_inferred="true"} ! protein localization to lysosome is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport @@ -61489,7 +61544,6 @@ id: GO:0098968 ! neurotransmitter receptor transport postsynaptic membrane to endosome is_a: GO:0016197 {is_inferred="true"} ! endosomal transport is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0072666 {is_inferred="true"} ! establishment of protein localization to vacuole is_a: GO:0099637 {is_inferred="true"} ! neurotransmitter receptor transport is_a: GO:1902946 {is_inferred="true"} ! protein localization to early endosome @@ -61816,6 +61870,30 @@ is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] +id: GO:0099069 ! synaptic vesicle tethering involved in synaptic vesicle exocytosis +is_a: GO:0090522 {is_inferred="true"} ! vesicle tethering involved in exocytosis +is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission + +[Term] +id: GO:0099074 ! mitochondrion to lysosome transport +is_a: GO:0007041 {is_inferred="true"} ! lysosomal transport +is_a: GO:0099075 {is_inferred="true"} ! mitochondrion-derived vesicle mediated transport + +[Term] +id: GO:0099075 ! mitochondrion-derived vesicle mediated transport +is_a: GO:0006839 {is_inferred="true"} ! mitochondrial transport +is_a: GO:0016192 {is_inferred="true"} ! vesicle-mediated transport + +[Term] +id: GO:0099076 ! mitochondrion to peroxisome transport +is_a: GO:0043574 {is_inferred="true"} ! peroxisomal transport +is_a: GO:0099075 {is_inferred="true"} ! mitochondrion-derived vesicle mediated transport + +[Term] +id: GO:0099078 ! BORC complex +is_a: GO:0044445 {is_inferred="true"} ! cytosolic part + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -61920,6 +61998,10 @@ is_a: GO:0099509 {is_inferred="true"} ! regulation of presynaptic cytosolic calcium ion concentration [Term] +id: GO:0099534 ! calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration +is_a: GO:0099510 {is_inferred="true"} ! calcium ion binding involved in regulation of cytosolic calcium ion concentration + +[Term] id: GO:0099539 ! neuropeptide secretion from presynapse is_a: GO:0002790 {is_inferred="true"} ! peptide secretion @@ -61978,6 +62060,10 @@ is_a: GO:1905114 {is_inferred="true"} ! cell surface receptor signaling pathway involved in cell-cell signaling [Term] +id: GO:0099567 ! calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration +is_a: GO:0099510 {is_inferred="true"} ! calcium ion binding involved in regulation of cytosolic calcium ion concentration + +[Term] id: GO:0099568 ! cytoplasmic region is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part @@ -62187,47 +62273,51 @@ [Term] id: GO:0100002 ! negative regulation of protein kinase activity by protein phosphorylation is_a: GO:0006468 {is_inferred="true"} ! protein phosphorylation -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006469 {is_inferred="true"} ! negative regulation of protein kinase activity [Term] id: GO:0100003 ! positive regulation of sodium ion transport by transcription from RNA polymerase II promoter +is_a: GO:0010765 {is_inferred="true"} ! positive regulation of sodium ion transport is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter [Term] id: GO:0100004 ! positive regulation of peroxisome organization by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900064 {is_inferred="true"} ! positive regulation of peroxisome organization [Term] id: GO:0100005 ! positive regulation of ethanol catabolic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900066 {is_inferred="true"} ! positive regulation of ethanol catabolic process [Term] id: GO:0100006 ! positive regulation of sulfite transport by transcription from RNA polymerase II promoter is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter +is_a: GO:1900072 {is_inferred="true"} ! positive regulation of sulfite transport [Term] id: GO:0100007 ! negative regulation of ceramide biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900060 {is_inferred="true"} ! negative regulation of ceramide biosynthetic process [Term] id: GO:0100008 ! regulation of fever generation by prostaglandin biosynthetic process is_a: GO:0001516 {is_inferred="true"} ! prostaglandin biosynthetic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031620 {is_inferred="true"} ! regulation of fever generation [Term] id: GO:0100009 ! regulation of fever generation by prostaglandin secretion +is_a: GO:0031620 {is_inferred="true"} ! regulation of fever generation is_a: GO:0032310 {is_inferred="true"} ! prostaglandin secretion -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] id: GO:0100010 ! positive regulation of fever generation by prostaglandin biosynthetic process +is_a: GO:0031622 {is_inferred="true"} ! positive regulation of fever generation is_a: GO:0100008 {is_inferred="true"} ! regulation of fever generation by prostaglandin biosynthetic process [Term] id: GO:0100011 ! positive regulation of fever generation by prostaglandin secretion +is_a: GO:0031622 {is_inferred="true"} ! positive regulation of fever generation is_a: GO:0100009 {is_inferred="true"} ! regulation of fever generation by prostaglandin secretion [Term] @@ -62238,211 +62328,222 @@ [Term] id: GO:0100013 ! positive regulation of fatty acid beta-oxidation by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0032000 {is_inferred="true"} ! positive regulation of fatty acid beta-oxidation [Term] id: GO:0100014 ! positive regulation of mating type switching by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031496 {is_inferred="true"} ! positive regulation of mating type switching [Term] id: GO:0100015 ! positive regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0100024 {is_inferred="true"} ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter +is_a: GO:1900090 {is_inferred="true"} ! positive regulation of inositol biosynthetic process [Term] id: GO:0100016 ! regulation of thiamine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0070623 {is_inferred="true"} ! regulation of thiamine biosynthetic process [Term] id: GO:0100017 ! negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0022408 {is_inferred="true"} ! negative regulation of cell-cell adhesion [Term] id: GO:0100018 ! regulation of glucose import by transcription from RNA polymerase II promoter +is_a: GO:0046324 {is_inferred="true"} ! regulation of glucose import is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter [Term] id: GO:0100019 ! regulation of cAMP-mediated signaling by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0043949 {is_inferred="true"} ! regulation of cAMP-mediated signaling [Term] id: GO:0100020 ! regulation of transport by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0051049 {is_inferred="true"} ! regulation of transport [Term] id: GO:0100021 ! regulation of iron ion transport by transcription from RNA polymerase II promoter +is_a: GO:0034756 {is_inferred="true"} ! regulation of iron ion transport is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter [Term] id: GO:0100022 ! regulation of iron ion import by transcription from RNA polymerase II promoter is_a: GO:0100021 {is_inferred="true"} ! regulation of iron ion transport by transcription from RNA polymerase II promoter +is_a: GO:1900390 {is_inferred="true"} ! regulation of iron ion import [Term] id: GO:0100023 ! regulation of meiotic nuclear division by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division [Term] id: GO:0100024 ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter +is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] id: GO:0100025 ! negative regulation of cellular amino acid biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000283 {is_inferred="true"} ! negative regulation of cellular amino acid biosynthetic process [Term] id: GO:0100026 ! positive regulation of DNA repair by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0045739 {is_inferred="true"} ! positive regulation of DNA repair [Term] id: GO:0100027 ! regulation of cell separation after cytokinesis by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0010590 {is_inferred="true"} ! regulation of cell separation after cytokinesis [Term] id: GO:0100028 ! regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031137 {is_inferred="true"} ! regulation of conjugation with cellular fusion [Term] id: GO:0100032 ! positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0071073 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process [Term] id: GO:0100033 ! regulation of fungal-type cell wall biogenesis by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0032995 {is_inferred="true"} ! regulation of fungal-type cell wall biogenesis [Term] id: GO:0100034 ! regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter +is_a: GO:0060634 {is_inferred="true"} ! regulation of 4,6-pyruvylated galactose residue biosynthetic process is_a: GO:0100024 {is_inferred="true"} ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter [Term] id: GO:0100035 ! negative regulation of transmembrane transport by transcription from RNA polymerase II promoter +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter [Term] id: GO:0100036 ! positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900373 {is_inferred="true"} ! positive regulation of purine nucleotide biosynthetic process [Term] id: GO:0100037 ! positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900421 {is_inferred="true"} ! positive regulation of cellular alcohol catabolic process [Term] id: GO:0100038 ! regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900407 {is_inferred="true"} ! regulation of cellular response to oxidative stress [Term] id: GO:0100039 ! regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900397 {is_inferred="true"} ! regulation of pyrimidine nucleotide biosynthetic process [Term] id: GO:0100040 ! negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000218 {is_inferred="true"} ! negative regulation of invasive growth in response to glucose limitation [Term] id: GO:0100041 ! positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000222 {is_inferred="true"} ! positive regulation of pseudohyphal growth [Term] id: GO:0100042 ! negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000221 {is_inferred="true"} ! negative regulation of pseudohyphal growth [Term] id: GO:0100043 ! negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900068 {is_inferred="true"} ! negative regulation of cellular response to alkaline pH [Term] id: GO:0100044 ! negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900070 {is_inferred="true"} ! negative regulation of cellular hyperosmotic salinity response [Term] id: GO:0100045 ! negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900082 {is_inferred="true"} ! negative regulation of arginine catabolic process [Term] id: GO:0100046 ! positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900080 {is_inferred="true"} ! positive regulation of arginine biosynthetic process [Term] id: GO:0100047 ! negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0100024 {is_inferred="true"} ! regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter +is_a: GO:1900089 {is_inferred="true"} ! negative regulation of inositol biosynthetic process [Term] id: GO:0100048 ! positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2001247 {is_inferred="true"} ! positive regulation of phosphatidylcholine biosynthetic process [Term] id: GO:0100049 ! negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2001246 {is_inferred="true"} ! negative regulation of phosphatidylcholine biosynthetic process [Term] id: GO:0100050 ! negative regulation of mating type switching by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031495 {is_inferred="true"} ! negative regulation of mating type switching [Term] id: GO:0100051 ! positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter +is_a: GO:0045836 {is_inferred="true"} ! positive regulation of meiotic nuclear division is_a: GO:0100023 {is_inferred="true"} ! regulation of meiotic nuclear division by transcription from RNA polymerase II promoter [Term] id: GO:0100052 ! negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000134 {is_inferred="true"} ! negative regulation of G1/S transition of mitotic cell cycle [Term] id: GO:0100053 ! positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900059 {is_inferred="true"} ! positive regulation of sulfate assimilation [Term] id: GO:0100054 ! positive regulation of flocculation via cell wall protein-carbohydrate interaction by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900479 {is_inferred="true"} ! positive regulation of flocculation via cell wall protein-carbohydrate interaction [Term] id: GO:0100055 ! positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0100032 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter +is_a: GO:1900470 {is_inferred="true"} ! positive regulation of phosphatidylserine biosynthetic process [Term] id: GO:0100056 ! negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900469 {is_inferred="true"} ! negative regulation of phosphatidylserine biosynthetic process [Term] id: GO:0100057 ! regulation of phenotypic switching by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900239 {is_inferred="true"} ! regulation of phenotypic switching [Term] id: GO:0100058 ! positive regulation of phenotypic switching by transcription from RNA polymerase II promoter is_a: GO:0100057 {is_inferred="true"} ! regulation of phenotypic switching by transcription from RNA polymerase II promoter +is_a: GO:1900241 {is_inferred="true"} ! positive regulation of phenotypic switching [Term] id: GO:0100059 ! negative regulation of phenotypic switching by transcription from RNA polymerase II promoter is_a: GO:0100057 {is_inferred="true"} ! regulation of phenotypic switching by transcription from RNA polymerase II promoter +is_a: GO:1900240 {is_inferred="true"} ! negative regulation of phenotypic switching [Term] id: GO:0100060 ! negative regulation of SREBP signaling pathway by DNA binding @@ -62451,28 +62552,31 @@ [Term] id: GO:0100061 ! negative regulation of SREBP signaling pathway by transcription factor catabolic process is_a: GO:0036369 {is_inferred="true"} ! transcription factor catabolic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000639 {is_inferred="true"} ! negative regulation of SREBP signaling pathway [Term] id: GO:0100062 ! positive regulation of SREBP signaling pathway by transcription factor catabolic process is_a: GO:0036369 {is_inferred="true"} ! transcription factor catabolic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:2000640 {is_inferred="true"} ! positive regulation of SREBP signaling pathway [Term] id: GO:0100063 ! regulation of dipeptide transmembrane transport by transcription from RNA polymerase II promoter is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter +is_a: GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport [Term] id: GO:0100064 ! negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900435 {is_inferred="true"} ! negative regulation of filamentous growth of a population of unicellular organisms in response to starvation [Term] id: GO:0100065 ! negative regulation of leucine import by transcription from RNA polymerase II promoter +is_a: GO:0060358 {is_inferred="true"} ! negative regulation of leucine import is_a: GO:0100020 {is_inferred="true"} ! regulation of transport by transcription from RNA polymerase II promoter [Term] id: GO:0100066 ! negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter +is_a: GO:0010515 {is_inferred="true"} ! negative regulation of induction of conjugation with cellular fusion is_a: GO:0100028 {is_inferred="true"} ! regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter [Term] @@ -62483,17 +62587,17 @@ [Term] id: GO:0100068 ! positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1903931 {is_inferred="true"} ! positive regulation of pyrimidine-containing compound salvage [Term] id: GO:0100069 ! negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0043524 {is_inferred="true"} ! negative regulation of neuron apoptotic process [Term] id: GO:0100070 ! regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0042304 {is_inferred="true"} ! regulation of fatty acid biosynthetic process [Term] id: GO:0101019 ! nucleolar exosome (RNase complex) @@ -64415,7 +64519,8 @@ [Term] id: GO:1900382 ! regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0070623 {is_inferred="true"} ! regulation of thiamine biosynthetic process [Term] id: GO:1900383 ! regulation of synaptic plasticity by receptor localization to synapse @@ -64442,7 +64547,8 @@ [Term] id: GO:1900389 ! regulation of glucose import by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0046324 {is_inferred="true"} ! regulation of glucose import [Term] id: GO:1900390 ! regulation of iron ion import @@ -64450,15 +64556,18 @@ [Term] id: GO:1900391 ! regulation of cAMP-mediated signaling by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0043949 {is_inferred="true"} ! regulation of cAMP-mediated signaling [Term] id: GO:1900392 ! regulation of transport by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter +is_a: GO:0051049 {is_inferred="true"} ! regulation of transport [Term] id: GO:1900393 ! regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0034756 {is_inferred="true"} ! regulation of iron ion transport [Term] id: GO:1900394 ! regulation of kojic acid biosynthetic process @@ -64493,15 +64602,18 @@ [Term] id: GO:1900400 ! regulation of iron ion import by regulation of transcription from RNA polymerase II promoter +is_a: GO:1900390 {is_inferred="true"} ! regulation of iron ion import is_a: GO:1900393 {is_inferred="true"} ! regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900401 ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0040020 {is_inferred="true"} ! regulation of meiotic nuclear division [Term] id: GO:1900402 ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006109 {is_inferred="true"} ! regulation of carbohydrate metabolic process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900403 ! negative regulation of cellular amino acid biosynthetic process by negative regulation of transcription from RNA polymerase II promoter @@ -64510,11 +64622,13 @@ [Term] id: GO:1900404 ! positive regulation of DNA repair by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006282 {is_inferred="true"} ! regulation of DNA repair +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900405 ! regulation of cell separation after cytokinesis by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0010590 {is_inferred="true"} ! regulation of cell separation after cytokinesis [Term] id: GO:1900406 ! regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter @@ -64545,14 +64659,17 @@ [Term] id: GO:1900415 ! regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0032995 {is_inferred="true"} ! regulation of fungal-type cell wall biogenesis [Term] id: GO:1900416 ! regulation of 4,6-pyruvylated galactose residue biosynthetic process by regulation of transcription from RNA polymerase II promoter +is_a: GO:0060634 {is_inferred="true"} ! regulation of 4,6-pyruvylated galactose residue biosynthetic process is_a: GO:1900402 {is_inferred="true"} ! regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900417 ! negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport is_a: GO:1900392 {is_inferred="true"} ! regulation of transport by negative regulation of transcription from RNA polymerase II promoter [Term] @@ -64576,11 +64693,13 @@ [Term] id: GO:1900422 ! positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter +is_a: GO:1900419 {is_inferred="true"} ! regulation of cellular alcohol catabolic process [Term] id: GO:1900423 ! positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900424 ! regulation of defense response to bacterium @@ -64607,7 +64726,8 @@ [Term] id: GO:1900427 ! regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:1900407 {is_inferred="true"} ! regulation of cellular response to oxidative stress [Term] id: GO:1900428 ! regulation of filamentous growth of a population of unicellular organisms @@ -64717,7 +64837,8 @@ [Term] id: GO:1900448 ! regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:1900397 {is_inferred="true"} ! regulation of pyrimidine nucleotide biosynthetic process [Term] id: GO:1900449 ! regulation of glutamate receptor signaling pathway @@ -64793,7 +64914,10 @@ [Term] id: GO:1900465 ! negative regulation of arginine catabolic process by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0033243 {is_inferred="true"} ! positive regulation of cellular amine catabolic process +is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process +is_a: GO:0072365 {is_inferred="true"} ! regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter +is_a: GO:1900081 {is_inferred="true"} ! regulation of arginine catabolic process [Term] id: GO:1900466 ! positive regulation of arginine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter @@ -64840,10 +64964,12 @@ [Term] id: GO:1900475 ! positive regulation of meiosis by negative regulation of transcription from RNA polymerase II promoter +is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter is_a: GO:1900401 {is_inferred="true"} ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter [Term] id: GO:1900476 ! positive regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter is_a: GO:1900401 {is_inferred="true"} ! regulation of meiosis by regulation of transcription from RNA polymerase II promoter [Term] @@ -65126,7 +65252,8 @@ [Term] id: GO:1900526 ! negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter +is_a: GO:1900470 {is_inferred="true"} ! positive regulation of phosphatidylserine biosynthetic process [Term] id: GO:1900533 ! palmitic acid metabolic process @@ -65175,7 +65302,8 @@ [Term] id: GO:1900545 ! regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:1900239 {is_inferred="true"} ! regulation of phenotypic switching [Term] id: GO:1900546 ! positive regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter @@ -67306,19 +67434,19 @@ [Term] id: GO:1900920 ! regulation of L-glutamate import is_a: GO:0010958 {is_inferred="true"} ! regulation of amino acid import -is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport [Term] id: GO:1900921 ! negative regulation of L-glutamate import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport [Term] id: GO:1900922 ! positive regulation of L-glutamate import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1900920 {is_inferred="true"} ! regulation of L-glutamate import +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport [Term] id: GO:1900923 ! regulation of glycine import @@ -67326,12 +67454,12 @@ [Term] id: GO:1900924 ! negative regulation of glycine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1900923 {is_inferred="true"} ! regulation of glycine import [Term] id: GO:1900925 ! positive regulation of glycine import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1900923 {is_inferred="true"} ! regulation of glycine import [Term] @@ -67340,12 +67468,12 @@ [Term] id: GO:1900927 ! negative regulation of L-threonine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1900926 {is_inferred="true"} ! regulation of L-threonine import [Term] id: GO:1900928 ! positive regulation of L-threonine import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1900926 {is_inferred="true"} ! regulation of L-threonine import [Term] @@ -67354,12 +67482,12 @@ [Term] id: GO:1900930 ! negative regulation of L-tyrosine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1900929 {is_inferred="true"} ! regulation of L-tyrosine import [Term] id: GO:1900931 ! positive regulation of L-tyrosine import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1900929 {is_inferred="true"} ! regulation of L-tyrosine import [Term] @@ -67951,12 +68079,12 @@ [Term] id: GO:1901035 ! negative regulation of L-glutamine import -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1901034 {is_inferred="true"} ! regulation of L-glutamine import [Term] id: GO:1901036 ! positive regulation of L-glutamine import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1901034 {is_inferred="true"} ! regulation of L-glutamine import [Term] @@ -67983,7 +68111,7 @@ [Term] id: GO:1901042 ! positive regulation of L-arginine import is_a: GO:0010963 {is_inferred="true"} ! regulation of L-arginine import -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport [Term] id: GO:1901044 ! protein polyubiquitination involved in nucleus-associated proteasomal ubiquitin-dependent protein catabolic process @@ -70181,7 +70309,8 @@ [Term] id: GO:1901488 ! positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1901484 {is_inferred="true"} ! negative regulation of transcription factor catabolic process +is_a: GO:2000638 {is_inferred="true"} ! regulation of SREBP signaling pathway [Term] id: GO:1901489 ! positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process in response to decreased oxygen levels @@ -71312,7 +71441,8 @@ [Term] id: GO:1901718 ! regulation of dipeptide transmembrane transport by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0035953 {is_inferred="true"} ! regulation of dipeptide transport by regulation of transcription from RNA polymerase II promoter +is_a: GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport [Term] id: GO:1901720 ! negative regulation of NMS complex assembly involved in kinetochore assembly @@ -72899,17 +73029,15 @@ [Term] id: GO:1902022 ! L-lysine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:1902023 ! L-arginine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport -is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport [Term] id: GO:1902024 ! L-histidine transport -is_a: GO:0015849 {is_inferred="true"} ! organic acid transport +is_a: GO:0006865 {is_inferred="true"} ! amino acid transport is_a: GO:0045117 {is_inferred="true"} ! azole transport [Term] @@ -74860,6 +74988,7 @@ id: GO:1902423 ! regulation of mitotic attachment of spindle microtubules to kinetochore is_a: GO:0033047 {is_inferred="true"} ! regulation of mitotic sister chromatid segregation is_a: GO:0051988 {is_inferred="true"} ! regulation of attachment of spindle microtubules to kinetochore +is_a: GO:0090235 {is_inferred="true"} ! regulation of metaphase plate congression [Term] id: GO:1902424 ! negative regulation of mitotic attachment of spindle microtubules to kinetochore @@ -75549,7 +75678,8 @@ [Term] id: GO:1902574 ! negative regulation of leucine import by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter +is_a: GO:0060357 {is_inferred="true"} ! regulation of leucine import [Term] id: GO:1902575 ! protein localization to cell division site involved in cytokinesis, actomyosin contractile ring assembly @@ -76743,7 +76873,7 @@ [Term] id: GO:1902827 ! negative regulation of L-arginine import into cell -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1902826 {is_inferred="true"} ! regulation of L-arginine import into cell [Term] @@ -76781,12 +76911,12 @@ [Term] id: GO:1902835 ! negative regulation of proline import into cell -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell [Term] id: GO:1902836 ! positive regulation of proline import into cell -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1902834 {is_inferred="true"} ! regulation of proline import into cell [Term] @@ -76826,7 +76956,9 @@ [Term] id: GO:1902844 ! positive regulation of spinal cord association neuron differentiation by negative regulation of canonical Wnt signaling pathway -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0050768 {is_inferred="true"} ! negative regulation of neurogenesis +is_a: GO:0090090 {is_inferred="true"} ! negative regulation of canonical Wnt signaling pathway +is_a: GO:1902829 {is_inferred="true"} ! regulation of spinal cord association neuron differentiation [Term] id: GO:1902845 ! negative regulation of mitotic spindle elongation @@ -78220,7 +78352,7 @@ [Term] id: GO:1903125 ! negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation is_a: GO:0018107 {is_inferred="true"} ! peptidyl-threonine phosphorylation -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1903124 {is_inferred="true"} ! negative regulation of thioredoxin peroxidase activity [Term] id: GO:1903126 ! negative regulation of centriole-centriole cohesion @@ -78243,7 +78375,7 @@ [Term] id: GO:1903130 ! positive regulation of leucine import into cell -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1903128 {is_inferred="true"} ! regulation of leucine import into cell [Term] @@ -80816,7 +80948,6 @@ [Term] id: GO:1903664 ! regulation of asexual reproduction is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:1903665 ! negative regulation of asexual reproduction @@ -81065,7 +81196,6 @@ id: GO:1903712 ! cysteine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0042883 {is_inferred="true"} ! cysteine transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:1903713 ! asparagine transmembrane transport @@ -81076,7 +81206,6 @@ id: GO:1903714 ! isoleucine transmembrane transport is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0015818 {is_inferred="true"} ! isoleucine transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:1903715 ! regulation of aerobic respiration @@ -81246,15 +81375,17 @@ [Term] id: GO:1903756 ! regulation of transcription from RNA polymerase II promoter by histone modification +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter is_a: GO:0016570 {is_inferred="true"} ! histone modification -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] id: GO:1903757 ! positive regulation of transcription from RNA polymerase II promoter by histone modification +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter is_a: GO:1903756 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter by histone modification [Term] id: GO:1903758 ! negative regulation of transcription from RNA polymerase II promoter by histone modification +is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter is_a: GO:1903756 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter by histone modification [Term] @@ -81415,8 +81546,8 @@ [Term] id: GO:1903789 ! regulation of amino acid transmembrane transport -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport +is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:1903790 ! guanine nucleotide transmembrane transport @@ -82431,7 +82562,8 @@ [Term] id: GO:1904001 ! positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter +is_a: GO:1903930 {is_inferred="true"} ! regulation of pyrimidine-containing compound salvage [Term] id: GO:1904002 ! regulation of sebum secreting cell proliferation @@ -84656,6 +84788,7 @@ [Term] id: GO:1904448 ! regulation of aspartate secretion +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport is_a: GO:1903530 {is_inferred="true"} ! regulation of secretion by cell @@ -84663,6 +84796,7 @@ id: GO:1904449 ! negative regulation of aspartate secretion is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:1903531 {is_inferred="true"} ! negative regulation of secretion by cell +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:1904448 {is_inferred="true"} ! regulation of aspartate secretion [Term] @@ -84669,6 +84803,7 @@ id: GO:1904450 ! positive regulation of aspartate secretion is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1903532 {is_inferred="true"} ! positive regulation of secretion by cell +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:1904448 {is_inferred="true"} ! regulation of aspartate secretion [Term] @@ -85496,14 +85631,14 @@ [Term] id: GO:1904624 ! regulation of glycine secretion, neurotransmission -is_a: GO:0032890 {is_inferred="true"} ! regulation of organic acid transport is_a: GO:0046928 {is_inferred="true"} ! regulation of neurotransmitter secretion +is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport is_a: GO:0060092 {is_inferred="true"} ! regulation of synaptic transmission, glycinergic [Term] id: GO:1904625 ! negative regulation of glycine secretion, neurotransmission -is_a: GO:0032891 {is_inferred="true"} ! negative regulation of organic acid transport is_a: GO:0046929 {is_inferred="true"} ! negative regulation of neurotransmitter secretion +is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport is_a: GO:0060093 {is_inferred="true"} ! negative regulation of synaptic transmission, glycinergic is_a: GO:1904624 {is_inferred="true"} ! regulation of glycine secretion, neurotransmission @@ -85510,7 +85645,7 @@ [Term] id: GO:1904626 ! positive regulation of glycine secretion, neurotransmission is_a: GO:0001956 {is_inferred="true"} ! positive regulation of neurotransmitter secretion -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:0060094 {is_inferred="true"} ! positive regulation of synaptic transmission, glycinergic is_a: GO:1904624 {is_inferred="true"} ! regulation of glycine secretion, neurotransmission @@ -86077,7 +86212,7 @@ [Term] id: GO:1904740 ! positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:1900436 {is_inferred="true"} ! positive regulation of filamentous growth of a population of unicellular organisms in response to starvation [Term] id: GO:1904741 ! positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by positive regulation of transcription from RNA polymerase II promoter @@ -87381,7 +87516,7 @@ [Term] id: GO:1905010 ! positive regulation of L-lysine import into cell -is_a: GO:0032892 {is_inferred="true"} ! positive regulation of organic acid transport +is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport is_a: GO:1905008 {is_inferred="true"} ! regulation of L-lysine import into cell [Term] @@ -87471,11 +87606,8 @@ [Term] id: GO:1905027 ! regulation of membrane depolarization during AV node cell action potential -is_a: GO:0003254 {is_inferred="true"} ! regulation of membrane depolarization -is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0098904 {is_inferred="true"} ! regulation of AV node cell action potential is_a: GO:1900825 {is_inferred="true"} ! regulation of membrane depolarization during cardiac muscle cell action potential -is_a: GO:1903779 {is_inferred="true"} ! regulation of cardiac conduction [Term] id: GO:1905028 ! negative regulation of membrane depolarization during AV node cell action potential @@ -87903,7 +88035,6 @@ [Term] id: GO:1905115 ! regulation of lateral attachment of mitotic spindle microtubules to kinetochore -is_a: GO:0090235 {is_inferred="true"} ! regulation of metaphase plate congression is_a: GO:1902423 {is_inferred="true"} ! regulation of mitotic attachment of spindle microtubules to kinetochore [Term] @@ -89121,19 +89252,19 @@ [Term] id: GO:1905365 ! regulation of intralumenal vesicle formation -is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport +is_a: GO:1904978 {is_inferred="true"} ! regulation of endosome organization [Term] id: GO:1905366 ! negative regulation of intralumenal vesicle formation -is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:1904979 {is_inferred="true"} ! negative regulation of endosome organization is_a: GO:1905365 {is_inferred="true"} ! regulation of intralumenal vesicle formation [Term] id: GO:1905367 ! positive regulation of intralumenal vesicle formation -is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:1904980 {is_inferred="true"} ! positive regulation of endosome organization is_a: GO:1905365 {is_inferred="true"} ! regulation of intralumenal vesicle formation [Term] @@ -89702,6 +89833,11 @@ is_a: GO:0030936 {is_inferred="true"} ! transmembrane collagen trimer [Term] +id: GO:1990331 ! Hpa2 acetyltransferase complex +is_a: GO:0070775 {is_inferred="true"} ! H3 histone acetyltransferase complex +is_a: GO:1902562 {is_inferred="true"} ! H4 histone acetyltransferase complex + +[Term] id: GO:1990332 ! Ire1 complex is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex @@ -89854,6 +89990,10 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] +id: GO:1990520 ! separase-securin complex +is_a: GO:1905369 {is_inferred="true"} ! endopeptidase complex + +[Term] id: GO:1990524 ! INA complex is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex @@ -90010,6 +90150,10 @@ is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport [Term] +id: GO:1990598 ! repair of mitotic mono-orientation defects +is_a: GO:0022402 {is_inferred="true"} ! cell cycle process + +[Term] id: GO:1990604 ! IRE1-TRAF2-ASK1 complex is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex @@ -90139,7 +90283,7 @@ [Term] id: GO:1990758 ! mitotic sister chromatid biorientation -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process +is_a: GO:0031134 {is_inferred="true"} ! sister chromatid biorientation [Term] id: GO:1990761 ! growth cone lamellipodium @@ -90210,7 +90354,7 @@ [Term] id: GO:1990822 ! basic amino acid transmembrane transport -is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport +is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport [Term] id: GO:1990849 ! maintenance of vacuolar location @@ -91566,7 +91710,6 @@ [Term] id: GO:2000241 ! regulation of reproductive process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process -is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] id: GO:2000242 ! negative regulation of reproductive process @@ -92818,16 +92961,19 @@ [Term] id: GO:2000485 ! regulation of glutamine transport +is_a: GO:0044070 {is_inferred="true"} ! regulation of anion transport is_a: GO:0051955 {is_inferred="true"} ! regulation of amino acid transport [Term] id: GO:2000486 ! negative regulation of glutamine transport is_a: GO:0051956 {is_inferred="true"} ! negative regulation of amino acid transport +is_a: GO:1903792 {is_inferred="true"} ! negative regulation of anion transport is_a: GO:2000485 {is_inferred="true"} ! regulation of glutamine transport [Term] id: GO:2000487 ! positive regulation of glutamine transport is_a: GO:0051957 {is_inferred="true"} ! positive regulation of amino acid transport +is_a: GO:1903793 {is_inferred="true"} ! positive regulation of anion transport is_a: GO:2000485 {is_inferred="true"} ! regulation of glutamine transport [Term] @@ -93024,7 +93170,8 @@ [Term] id: GO:2000531 ! regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process +is_a: GO:0042304 {is_inferred="true"} ! regulation of fatty acid biosynthetic process +is_a: GO:0072364 {is_inferred="true"} ! regulation of cellular ketone metabolic process by regulation of transcription from RNA polymerase II promoter [Term] id: GO:2000532 ! regulation of renal albumin absorption @@ -96654,11 +96801,13 @@ [Term] id: GO:2001248 ! regulation of ammonia assimilation cycle is_a: GO:0006521 {is_inferred="true"} ! regulation of cellular amino acid metabolic process +is_a: GO:0006808 {is_inferred="true"} ! regulation of nitrogen utilization is_a: GO:2000211 {is_inferred="true"} ! regulation of glutamate metabolic process [Term] id: GO:2001249 ! negative regulation of ammonia assimilation cycle is_a: GO:0045763 {is_inferred="true"} ! negative regulation of cellular amino acid metabolic process +is_a: GO:0045847 {is_inferred="true"} ! negative regulation of nitrogen utilization is_a: GO:2000212 {is_inferred="true"} ! negative regulation of glutamate metabolic process is_a: GO:2001248 {is_inferred="true"} ! regulation of ammonia assimilation cycle @@ -96665,6 +96814,7 @@ [Term] id: GO:2001250 ! positive regulation of ammonia assimilation cycle is_a: GO:0045764 {is_inferred="true"} ! positive regulation of cellular amino acid metabolic process +is_a: GO:0045848 {is_inferred="true"} ! positive regulation of nitrogen utilization is_a: GO:2000213 {is_inferred="true"} ! positive regulation of glutamate metabolic process is_a: GO:2001248 {is_inferred="true"} ! regulation of ammonia assimilation cycle ------------------------------------------------------------------------ r35175 | paola | 2016-08-26 07:06:47 -0700 (Fri, 26 Aug 2016) | 3 lines GH complement receptor merges ? #12579 - work in progress - see ticket for details changes in entailments ------------------------------------------------------------------------ r35166 | tberardi | 2016-08-25 17:51:09 -0700 (Thu, 25 Aug 2016) | 1 line incremental progress is separating plant organ development and animal organ development children terms changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35166) +++ go_inferences.obo (working copy) @@ -4254,7 +4254,7 @@ is_a: GO:0003154 {is_inferred="true"} ! BMP signaling pathway involved in determination of left/right symmetry [Term] -id: GO:0003156 ! regulation of organ formation +id: GO:0003156 ! regulation of animal organ formation is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -4392,7 +4392,7 @@ [Term] id: GO:0003264 ! regulation of cardioblast proliferation -is_a: GO:0003156 {is_inferred="true"} ! regulation of organ formation +is_a: GO:0003156 {is_inferred="true"} ! regulation of animal organ formation is_a: GO:2000136 {is_inferred="true"} ! regulation of cell proliferation involved in heart morphogenesis [Term] @@ -10968,6 +10968,7 @@ [Term] id: GO:0009878 ! nodule morphogenesis +is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction [Term] @@ -19894,7 +19895,7 @@ [Term] id: GO:0022612 ! gland morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis +is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis [Term] id: GO:0022617 ! extracellular matrix disassembly @@ -37908,7 +37909,7 @@ [Term] id: GO:0045704 ! regulation of salivary gland boundary specification -is_a: GO:0003156 {is_inferred="true"} ! regulation of organ formation +is_a: GO:0003156 {is_inferred="true"} ! regulation of animal organ formation [Term] id: GO:0045705 ! negative regulation of salivary gland boundary specification @@ -42796,16 +42797,12 @@ is_a: GO:0048827 {is_inferred="true"} ! phyllome development [Term] -id: GO:0048444 ! floral organ morphogenesis -is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis - -[Term] id: GO:0048449 ! floral organ formation is_a: GO:1905393 {is_inferred="true"} ! plant organ formation [Term] id: GO:0048450 ! floral organ structural organization +is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0048532 {is_inferred="true"} ! anatomical structure arrangement [Term] @@ -48349,7 +48346,7 @@ [Term] id: GO:0060349 ! bone morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis +is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis [Term] id: GO:0060351 ! cartilage development involved in endochondral bone morphogenesis @@ -48810,7 +48807,7 @@ [Term] id: GO:0060536 ! cartilage morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis +is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis [Term] id: GO:0060542 ! regulation of strand invasion @@ -49199,7 +49196,7 @@ [Term] id: GO:0060685 ! regulation of prostatic bud formation -is_a: GO:0003156 {is_inferred="true"} ! regulation of organ formation +is_a: GO:0003156 {is_inferred="true"} ! regulation of animal organ formation is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium @@ -50963,11 +50960,11 @@ [Term] id: GO:0061552 ! ganglion morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis +is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis [Term] id: GO:0061553 ! ganglion maturation -is_a: GO:0048799 {is_inferred="true"} ! organ maturation +is_a: GO:0048799 {is_inferred="true"} ! animal organ maturation [Term] id: GO:0061610 ! glycerol to glycerone phosphate metabolic process @@ -53183,7 +53180,7 @@ [Term] id: GO:0070977 ! bone maturation -is_a: GO:0048799 {is_inferred="true"} ! organ maturation +is_a: GO:0048799 {is_inferred="true"} ! animal organ maturation [Term] id: GO:0070980 ! biphenyl catabolic process @@ -55555,7 +55552,7 @@ [Term] id: GO:0072116 ! pronephros formation -is_a: GO:0048645 {is_inferred="true"} ! organ formation +is_a: GO:0048645 {is_inferred="true"} ! animal organ formation [Term] id: GO:0072124 ! regulation of glomerular mesangial cell proliferation @@ -59298,7 +59295,7 @@ [Term] id: GO:0090381 ! regulation of heart induction -is_a: GO:0003156 {is_inferred="true"} ! regulation of organ formation +is_a: GO:0003156 {is_inferred="true"} ! regulation of animal organ formation is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis [Term] @@ -59569,7 +59566,7 @@ [Term] id: GO:0090596 ! sensory organ morphogenesis -is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis +is_a: GO:0009887 {is_inferred="true"} ! animal organ morphogenesis [Term] id: GO:0090598 ! male anatomical structure morphogenesis @@ -59596,6 +59593,10 @@ is_a: GO:0032155 {is_inferred="true"} ! cell division site part [Term] +id: GO:0090696 ! post-embryonic plant organ development +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate @@ -69606,7 +69607,6 @@ id: GO:1901371 ! regulation of leaf morphogenesis is_a: GO:1900618 {is_inferred="true"} ! regulation of shoot system morphogenesis is_a: GO:2000024 {is_inferred="true"} ! regulation of leaf development -is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] id: GO:1901372 ! trehalose biosynthetic process involved in ascospore formation ------------------------------------------------------------------------ r35164 | tberardi | 2016-08-25 16:28:46 -0700 (Thu, 25 Aug 2016) | 1 line removed link between spore-bearing organ development and animal organ development changes in entailments ------------------------------------------------------------------------ r35157 | termgenie | 2016-08-25 09:58:55 -0700 (Thu, 25 Aug 2016) | 3 lines TermGenie commit for user: vw reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35157) +++ go_inferences.obo (working copy) @@ -89336,6 +89336,17 @@ is_a: GO:1905407 {is_inferred="true"} ! regulation of creatine transmembrane transporter activity [Term] +id: GO:1905410 ! regulation of mitotic cohesin unloading +is_a: GO:0007346 {is_inferred="true"} ! regulation of mitotic cell cycle +is_a: GO:1905343 {is_inferred="true"} ! regulation of cohesin unloading + +[Term] +id: GO:1905411 ! positive regulation of mitotic cohesin unloading +is_a: GO:0045931 {is_inferred="true"} ! positive regulation of mitotic cell cycle +is_a: GO:1905339 {is_inferred="true"} ! positive regulation of cohesin unloading +is_a: GO:1905410 {is_inferred="true"} ! regulation of mitotic cohesin unloading + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35155 | termgenie | 2016-08-25 09:39:19 -0700 (Thu, 25 Aug 2016) | 4 lines TermGenie commit for user: bc reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35155) +++ go_inferences.obo (working copy) @@ -89281,6 +89281,61 @@ is_a: GO:0070231 {is_inferred="true"} ! T cell apoptotic process [Term] +id: GO:1905399 ! regulation of activated CD4-positive, alpha-beta T cell apoptotic process +is_a: GO:0070232 {is_inferred="true"} ! regulation of T cell apoptotic process + +[Term] +id: GO:1905400 ! negative regulation of activated CD4-positive, alpha-beta T cell apoptotic process +is_a: GO:0070233 {is_inferred="true"} ! negative regulation of T cell apoptotic process +is_a: GO:1905399 {is_inferred="true"} ! regulation of activated CD4-positive, alpha-beta T cell apoptotic process + +[Term] +id: GO:1905401 ! positive regulation of activated CD4-positive, alpha-beta T cell apoptotic process +is_a: GO:0070234 {is_inferred="true"} ! positive regulation of T cell apoptotic process +is_a: GO:1905399 {is_inferred="true"} ! regulation of activated CD4-positive, alpha-beta T cell apoptotic process + +[Term] +id: GO:1905402 ! regulation of activated CD8-positive, alpha-beta T cell apoptotic process +is_a: GO:0070232 {is_inferred="true"} ! regulation of T cell apoptotic process + +[Term] +id: GO:1905403 ! negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process +is_a: GO:0070233 {is_inferred="true"} ! negative regulation of T cell apoptotic process +is_a: GO:1905402 {is_inferred="true"} ! regulation of activated CD8-positive, alpha-beta T cell apoptotic process + +[Term] +id: GO:1905404 ! positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process +is_a: GO:0070234 {is_inferred="true"} ! positive regulation of T cell apoptotic process +is_a: GO:1905402 {is_inferred="true"} ! regulation of activated CD8-positive, alpha-beta T cell apoptotic process + +[Term] +id: GO:1905405 ! regulation of mitotic cohesin loading +is_a: GO:0033047 {is_inferred="true"} ! regulation of mitotic sister chromatid segregation +is_a: GO:0071922 {is_inferred="true"} ! regulation of cohesin loading + +[Term] +id: GO:1905406 ! positive regulation of mitotic cohesin loading +is_a: GO:0045840 {is_inferred="true"} ! positive regulation of mitotic nuclear division +is_a: GO:1905309 {is_inferred="true"} ! positive regulation of cohesin loading +is_a: GO:1905405 {is_inferred="true"} ! regulation of mitotic cohesin loading + +[Term] +id: GO:1905407 ! regulation of creatine transmembrane transporter activity +is_a: GO:0022898 {is_inferred="true"} ! regulation of transmembrane transporter activity + +[Term] +id: GO:1905408 ! negative regulation of creatine transmembrane transporter activity +is_a: GO:0032410 {is_inferred="true"} ! negative regulation of transporter activity +is_a: GO:0034763 {is_inferred="true"} ! negative regulation of transmembrane transport +is_a: GO:1905407 {is_inferred="true"} ! regulation of creatine transmembrane transporter activity + +[Term] +id: GO:1905409 ! positive regulation of creatine transmembrane transporter activity +is_a: GO:0032411 {is_inferred="true"} ! positive regulation of transporter activity +is_a: GO:0034764 {is_inferred="true"} ! positive regulation of transmembrane transport +is_a: GO:1905407 {is_inferred="true"} ! regulation of creatine transmembrane transporter activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35145 | paola | 2016-08-25 07:58:12 -0700 (Thu, 25 Aug 2016) | 3 lines Additional taxon checks? #12581 - work in progress - restricted ‘calcineurin-NFAT signaling cascade’ and ‘Wnt signaling pathway’ to ‘only in Metazoa’ changes in entailments ------------------------------------------------------------------------ r35143 | paola | 2016-08-25 07:29:37 -0700 (Thu, 25 Aug 2016) | 2 lines Fixing build again changes in entailments ------------------------------------------------------------------------ r35140 | mcourtot | 2016-08-25 07:21:58 -0700 (Thu, 25 Aug 2016) | 1 line removed wrong subclass of protein complex for id: GO:1990332 changes in entailments ------------------------------------------------------------------------ r35138 | paola | 2016-08-25 06:41:17 -0700 (Thu, 25 Aug 2016) | 2 lines Fixing xref errors again - will alert Chris as they keep coming in changes in entailments ------------------------------------------------------------------------ r35131 | paola | 2016-08-25 05:41:49 -0700 (Thu, 25 Aug 2016) | 2 lines Trying to fix another build error changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35131) +++ go_inferences.obo (working copy) @@ -24413,6 +24413,10 @@ is_a: GO:0032530 {is_inferred="true"} ! regulation of microvillus organization [Term] +id: GO:0032533 ! regulation of follicle cell microvillus length +is_a: GO:0008361 {is_inferred="true"} ! regulation of cell size + +[Term] id: GO:0032534 ! regulation of microvillus assembly is_a: GO:0032530 {is_inferred="true"} ! regulation of microvillus organization is_a: GO:0060491 {is_inferred="true"} ! regulation of cell projection assembly @@ -42349,10 +42353,6 @@ is_a: GO:0048145 {is_inferred="true"} ! regulation of fibroblast proliferation [Term] -id: GO:0048167 ! regulation of synaptic plasticity -is_a: GO:0050803 {is_inferred="true"} ! regulation of synapse structure or activity - -[Term] id: GO:0048175 ! hepatocyte growth factor biosynthetic process is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process ------------------------------------------------------------------------ r35121 | termgenie | 2016-08-25 01:56:54 -0700 (Thu, 25 Aug 2016) | 2 lines TermGenie commit for user: pga reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35121) +++ go_inferences.obo (working copy) @@ -89273,6 +89273,14 @@ is_a: GO:1905395 {is_inferred="true"} ! response to flavonoid [Term] +id: GO:1905397 ! activated CD8-positive, alpha-beta T cell apoptotic process +is_a: GO:0070231 {is_inferred="true"} ! T cell apoptotic process + +[Term] +id: GO:1905398 ! activated CD4-positive, alpha-beta T cell apoptotic process +is_a: GO:0070231 {is_inferred="true"} ! T cell apoptotic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35118 | mcourtot | 2016-08-25 01:37:45 -0700 (Thu, 25 Aug 2016) | 1 line added GOC:gg to GO:0097718. Closes https://github.com/geneontology/go-ontology/issues/12585 changes in entailments ------------------------------------------------------------------------ r35114 | cjm | 2016-08-24 17:41:54 -0700 (Wed, 24 Aug 2016) | 1 line axiomatizing fungal terms using FAO changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35115) +++ go_inferences.obo (working copy) @@ -1205,6 +1205,10 @@ is_a: GO:0015216 {is_inferred="true"} ! purine nucleotide transmembrane transporter activity [Term] +id: GO:0001411 ! hyphal tip +is_a: GO:0030427 {is_inferred="true"} ! site of polarized growth + +[Term] id: GO:0001504 ! neurotransmitter uptake is_a: GO:0098657 {is_inferred="true"} ! import into cell @@ -20570,6 +20574,10 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] +id: GO:0030446 ! hyphal cell wall +is_a: GO:0009277 {is_inferred="true"} ! fungal-type cell wall + +[Term] id: GO:0030449 ! regulation of complement activation is_a: GO:0002697 {is_inferred="true"} ! regulation of immune effector process is_a: GO:0002920 {is_inferred="true"} ! regulation of humoral immune response @@ -23426,6 +23434,10 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] +id: GO:0032168 ! hyphal septin ring +is_a: GO:0005940 {is_inferred="true"} ! septin ring + +[Term] id: GO:0032169 ! prospore septin ring is_a: GO:0005940 {is_inferred="true"} ! septin ring @@ -56979,16 +56991,23 @@ is_a: GO:0075288 {is_inferred="true"} ! negative regulation of sporangiospore formation [Term] +id: GO:0075243 ! oospore formation +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process + +[Term] id: GO:0075244 ! regulation of oospore formation +is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process is_a: GO:0043940 {is_inferred="true"} ! regulation of sexual sporulation resulting in formation of a cellular spore [Term] id: GO:0075245 ! positive regulation of oospore formation +is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process is_a: GO:0043941 {is_inferred="true"} ! positive regulation of sexual sporulation resulting in formation of a cellular spore is_a: GO:0075244 {is_inferred="true"} ! regulation of oospore formation [Term] id: GO:0075246 ! negative regulation of oospore formation +is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process is_a: GO:0043942 {is_inferred="true"} ! negative regulation of sexual sporulation resulting in formation of a cellular spore is_a: GO:0075244 {is_inferred="true"} ! regulation of oospore formation @@ -57007,30 +57026,44 @@ is_a: GO:0075248 {is_inferred="true"} ! regulation of aeciospore formation [Term] +id: GO:0075251 ! uredospore formation +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process + +[Term] id: GO:0075252 ! regulation of uredospore formation +is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process is_a: GO:0043943 {is_inferred="true"} ! regulation of asexual sporulation resulting in formation of a cellular spore [Term] id: GO:0075253 ! positive regulation of uredospore formation +is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process is_a: GO:0043945 {is_inferred="true"} ! positive regulation of asexual sporulation resulting in formation of a cellular spore is_a: GO:0075252 {is_inferred="true"} ! regulation of uredospore formation [Term] id: GO:0075254 ! negative regulation of uredospore formation +is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process is_a: GO:0043944 {is_inferred="true"} ! negative regulation of asexual sporulation resulting in formation of a cellular spore is_a: GO:0075252 {is_inferred="true"} ! regulation of uredospore formation [Term] +id: GO:0075255 ! teliospore formation +is_a: GO:0044711 {is_inferred="true"} ! single-organism biosynthetic process + +[Term] id: GO:0075256 ! regulation of teliospore formation +is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process is_a: GO:0043943 {is_inferred="true"} ! regulation of asexual sporulation resulting in formation of a cellular spore [Term] id: GO:0075257 ! positive regulation of teliospore formation +is_a: GO:0009891 {is_inferred="true"} ! positive regulation of biosynthetic process is_a: GO:0043945 {is_inferred="true"} ! positive regulation of asexual sporulation resulting in formation of a cellular spore is_a: GO:0075256 {is_inferred="true"} ! regulation of teliospore formation [Term] id: GO:0075258 ! negative regulation of teliospore formation +is_a: GO:0009890 {is_inferred="true"} ! negative regulation of biosynthetic process is_a: GO:0043944 {is_inferred="true"} ! negative regulation of asexual sporulation resulting in formation of a cellular spore is_a: GO:0075256 {is_inferred="true"} ! regulation of teliospore formation ------------------------------------------------------------------------ r35111 | tberardi | 2016-08-24 17:13:58 -0700 (Wed, 24 Aug 2016) | 1 line GH12609 GO:0032116 SMC loading complex name change - closed changes in entailments ------------------------------------------------------------------------ r35111 | tberardi | 2016-08-24 17:13:58 -0700 (Wed, 24 Aug 2016) | 1 line GH12609 GO:0032116 SMC loading complex name change - closed changes in entailments ------------------------------------------------------------------------ r35106 | tberardi | 2016-08-24 11:11:31 -0700 (Wed, 24 Aug 2016) | 1 line GH12578 - incremental progress in cleaning up animal organ and plant organ development split changes in entailments ------------------------------------------------------------------------ r35106 | tberardi | 2016-08-24 11:11:31 -0700 (Wed, 24 Aug 2016) | 1 line GH12578 - incremental progress in cleaning up animal organ and plant organ development split changes in entailments ------------------------------------------------------------------------ r35104 | tberardi | 2016-08-24 10:49:07 -0700 (Wed, 24 Aug 2016) | 1 line GH12611 NTR: mitochondrial membrane scission site - closed changes in entailments ------------------------------------------------------------------------ r35102 | tberardi | 2016-08-24 10:44:12 -0700 (Wed, 24 Aug 2016) | 1 line GH12612 - Synonym request for GO:0090149 mitochondrial membrane fission - closed changes in entailments ------------------------------------------------------------------------ r35100 | tberardi | 2016-08-24 10:33:23 -0700 (Wed, 24 Aug 2016) | 1 line GH12578 - incremental progress in cleaning up animal organ and plant organ development split changes in entailments ------------------------------------------------------------------------ r35098 | tberardi | 2016-08-24 09:50:47 -0700 (Wed, 24 Aug 2016) | 1 line GH12610 NTR component term: heteroreceptor complex - closed changes in entailments ------------------------------------------------------------------------ r35096 | termgenie | 2016-08-24 08:53:19 -0700 (Wed, 24 Aug 2016) | 3 lines TermGenie commit for user: sl reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35096) +++ go_inferences.obo (working copy) @@ -73607,13 +73607,13 @@ [Term] id: GO:1902168 ! response to catechin is_a: GO:0080184 {is_inferred="true"} ! response to phenylpropanoid -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:1905395 {is_inferred="true"} ! response to flavonoid [Term] id: GO:1902169 ! cellular response to catechin is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1902168 {is_inferred="true"} ! response to catechin +is_a: GO:1905396 {is_inferred="true"} ! cellular response to flavonoid [Term] id: GO:1902170 ! cellular response to reactive nitrogen species @@ -88461,13 +88461,12 @@ [Term] id: GO:1905235 ! response to quercetin -is_a: GO:0010033 {is_inferred="true"} ! response to organic substance -is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound +is_a: GO:1905395 {is_inferred="true"} ! response to flavonoid [Term] id: GO:1905236 ! cellular response to quercetin -is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound is_a: GO:1905235 {is_inferred="true"} ! response to quercetin +is_a: GO:1905396 {is_inferred="true"} ! cellular response to flavonoid [Term] id: GO:1905237 ! response to cyclosporin A @@ -89227,6 +89226,20 @@ is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] +id: GO:1905394 ! retromer complex binding +is_a: GO:0032403 {is_inferred="true"} ! protein complex binding + +[Term] +id: GO:1905395 ! response to flavonoid +is_a: GO:0010033 {is_inferred="true"} ! response to organic substance +is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound + +[Term] +id: GO:1905396 ! cellular response to flavonoid +is_a: GO:1901701 {is_inferred="true"} ! cellular response to oxygen-containing compound +is_a: GO:1905395 {is_inferred="true"} ! response to flavonoid + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35093 | mcourtot | 2016-08-24 07:49:21 -0700 (Wed, 24 Aug 2016) | 1 line closes https://github.com/geneontology/go-ontology/issues/12592 changes in entailments ------------------------------------------------------------------------ r35091 | dph | 2016-08-24 06:46:36 -0700 (Wed, 24 Aug 2016) | 2 lines Added mitotic cohesin unloading. changes in entailments ------------------------------------------------------------------------ r35084 | termgenie | 2016-08-23 17:31:51 -0700 (Tue, 23 Aug 2016) | 3 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35084) +++ go_inferences.obo (working copy) @@ -11103,6 +11103,10 @@ is_a: GO:0009962 {is_inferred="true"} ! regulation of flavonoid biosynthetic process [Term] +id: GO:0009965 ! leaf morphogenesis +is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis + +[Term] id: GO:0009966 ! regulation of signal transduction is_a: GO:0010646 {is_inferred="true"} ! regulation of cell communication is_a: GO:0023051 {is_inferred="true"} ! regulation of signaling @@ -11186,6 +11190,10 @@ is_a: GO:0097159 {is_inferred="true"} ! organic cyclic compound binding [Term] +id: GO:0010015 ! root morphogenesis +is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis + +[Term] id: GO:0010021 ! amylopectin biosynthetic process is_a: GO:0009059 {is_inferred="true"} ! macromolecule biosynthetic process is_a: GO:1901137 {is_inferred="true"} ! carbohydrate derivative biosynthetic process @@ -11752,7 +11760,7 @@ [Term] id: GO:0010311 ! lateral root formation is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process -is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis +is_a: GO:1905393 {is_inferred="true"} ! plant organ formation [Term] id: GO:0010314 ! phosphatidylinositol-5-phosphate binding @@ -11796,7 +11804,7 @@ [Term] id: GO:0010338 ! leaf formation -is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis +is_a: GO:1905393 {is_inferred="true"} ! plant organ formation [Term] id: GO:0010344 ! seed oilbody biogenesis @@ -11807,6 +11815,10 @@ is_a: GO:0009699 {is_inferred="true"} ! phenylpropanoid biosynthetic process [Term] +id: GO:0010346 ! shoot axis formation +is_a: GO:1905393 {is_inferred="true"} ! plant organ formation + +[Term] id: GO:0010351 ! lithium ion transport is_a: GO:0015672 {is_inferred="true"} ! monovalent inorganic cation transport is_a: GO:0030001 {is_inferred="true"} ! metal ion transport @@ -11966,6 +11978,14 @@ is_a: GO:0021700 {is_inferred="true"} ! developmental maturation [Term] +id: GO:0010433 ! bract morphogenesis +is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis + +[Term] +id: GO:0010434 ! bract formation +is_a: GO:1905393 {is_inferred="true"} ! plant organ formation + +[Term] id: GO:0010439 ! regulation of glucosinolate biosynthetic process is_a: GO:0031326 {is_inferred="true"} ! regulation of cellular biosynthetic process is_a: GO:0042762 {is_inferred="true"} ! regulation of sulfur metabolic process @@ -42766,10 +42786,11 @@ [Term] id: GO:0048444 ! floral organ morphogenesis is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis [Term] id: GO:0048449 ! floral organ formation -is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis +is_a: GO:1905393 {is_inferred="true"} ! plant organ formation [Term] id: GO:0048450 ! floral organ structural organization @@ -42819,6 +42840,7 @@ [Term] id: GO:0048482 ! plant ovule morphogenesis is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:1905392 {is_inferred="true"} ! plant organ morphogenesis [Term] id: GO:0048488 ! synaptic vesicle endocytosis @@ -89197,6 +89219,14 @@ is_a: GO:1901900 {is_inferred="true"} ! regulation of protein localization to cell division site [Term] +id: GO:1905392 ! plant organ morphogenesis +is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis + +[Term] +id: GO:1905393 ! plant organ formation +is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35082 | tberardi | 2016-08-23 15:41:33 -0700 (Tue, 23 Aug 2016) | 1 line GH12490 obsolete terms (non existent process) under histone acetylation - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35082) +++ go_inferences.obo (working copy) @@ -62256,19 +62256,6 @@ is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] -id: GO:0100029 ! regulation of histone modification by transcription from RNA polymerase II promoter -is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:0100030 ! regulation of histone acetylation by transcription from RNA polymerase II promoter -is_a: GO:0100029 {is_inferred="true"} ! regulation of histone modification by transcription from RNA polymerase II promoter - -[Term] -id: GO:0100031 ! regulation of histone methylation by transcription from RNA polymerase II promoter -is_a: GO:0100029 {is_inferred="true"} ! regulation of histone modification by transcription from RNA polymerase II promoter - -[Term] id: GO:0100032 ! positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter is_a: GO:0006366 {is_inferred="true"} ! transcription from RNA polymerase II promoter is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process @@ -64496,20 +64483,6 @@ is_a: GO:1902884 {is_inferred="true"} ! positive regulation of response to oxidative stress [Term] -id: GO:1900410 ! regulation of histone modification by regulation of transcription from RNA polymerase II promoter -is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process - -[Term] -id: GO:1900411 ! regulation of histone acetylation by regulation of transcription from RNA polymerase II promoter -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter -is_a: GO:0035065 {is_inferred="true"} ! regulation of histone acetylation - -[Term] -id: GO:1900412 ! regulation of histone methylation by regulation of transcription from RNA polymerase II promoter -is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter -is_a: GO:0031060 {is_inferred="true"} ! regulation of histone methylation - -[Term] id: GO:1900413 ! positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter is_a: GO:0071073 {is_inferred="true"} ! positive regulation of phospholipid biosynthetic process ------------------------------------------------------------------------ r35080 | dph | 2016-08-23 10:23:31 -0700 (Tue, 23 Aug 2016) | 2 lines GH12607-closed and added logical definition for establishment of mitotic sister chromatid cohesion. changes in entailments ------------------------------------------------------------------------ r35078 | paola | 2016-08-23 08:45:25 -0700 (Tue, 23 Aug 2016) | 3 lines GH NTR: disordered protein domain specific binding #12585 - work in progress - added GO:0097718 disordered domain specific binding changes in entailments ------------------------------------------------------------------------ r35076 | mcourtot | 2016-08-23 07:50:57 -0700 (Tue, 23 Aug 2016) | 1 line updated definition of GO:0008390, testosterone 16-alpha-hydroxylase activity and GO:0101020, estrogen 16-alpha-hydroxylase activity to indicate that product of reaction is 16-alpha-hydroxyestrogen and not 6-alpha-hydroxyestrogen changes in entailments ------------------------------------------------------------------------ r35071 | paola | 2016-08-23 06:40:45 -0700 (Tue, 23 Aug 2016) | 7 lines GH NTRs: response to viscosity + copper ion transport across BBB/BCB #12594 - closed - added: changes in entailments ------------------------------------------------------------------------ r35065 | mcourtot | 2016-08-23 03:44:14 -0700 (Tue, 23 Aug 2016) | 1 line added id: GO:0101021, name: estrogen 2-hydroxylase activity. Closes #12601 changes in entailments ------------------------------------------------------------------------ r35063 | paola | 2016-08-23 03:21:44 -0700 (Tue, 23 Aug 2016) | 3 lines GH ntr: dolichol-phosphate-mannose synthase regulator activity #12599 - closed - added GO:0097713 dolichol-phosphate-mannose synthase regulator activity changes in entailments ------------------------------------------------------------------------ r35058 | termgenie | 2016-08-22 16:12:50 -0700 (Mon, 22 Aug 2016) | 2 lines TermGenie commit for user: vw reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35058) +++ go_inferences.obo (working copy) @@ -89220,6 +89220,10 @@ is_a: GO:1905389 {is_inferred="true"} ! response to leukotriene B4 [Term] +id: GO:1905391 ! regulation of protein localization to cell division site involved in cell separation after cytokinesis +is_a: GO:1901900 {is_inferred="true"} ! regulation of protein localization to cell division site + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35054 | mcourtot | 2016-08-22 05:33:21 -0700 (Mon, 22 Aug 2016) | 1 line added GOC:BHF for id: GO:0101020, name: estrogen 16-alpha-hydroxylase activity as per https://github.com/geneontology/go-ontology/issues/12576 changes in entailments ------------------------------------------------------------------------ r35048 | termgenie | 2016-08-22 01:33:03 -0700 (Mon, 22 Aug 2016) | 2 lines TermGenie commit for user: vw reviewed by pr changes in entailments ------------------------------------------------------------------------ r35045 | termgenie | 2016-08-21 23:47:27 -0700 (Sun, 21 Aug 2016) | 3 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35046) +++ go_inferences.obo (working copy) @@ -89202,6 +89202,24 @@ is_a: GO:1905384 {is_inferred="true"} ! regulation of protein localization to presynapse [Term] +id: GO:1905387 ! response to beta-carotene +is_a: GO:0033993 {is_inferred="true"} ! response to lipid + +[Term] +id: GO:1905388 ! cellular response to beta-carotene +is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid +is_a: GO:1905387 {is_inferred="true"} ! response to beta-carotene + +[Term] +id: GO:1905389 ! response to leukotriene B4 +is_a: GO:0070542 {is_inferred="true"} ! response to fatty acid + +[Term] +id: GO:1905390 ! cellular response to leukotriene B4 +is_a: GO:0071398 {is_inferred="true"} ! cellular response to fatty acid +is_a: GO:1905389 {is_inferred="true"} ! response to leukotriene B4 + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r35043 | termgenie | 2016-08-21 23:40:20 -0700 (Sun, 21 Aug 2016) | 2 lines TermGenie commit for user: sl reviewed by pr changes in entailments ------------------------------------------------------------------------ r35009 | dph | 2016-08-19 12:19:19 -0700 (Fri, 19 Aug 2016) | 2 lines Tweaked the definition of GO:0004467 to make the core definition consistent with the name of the activity and the gloss of the definition. GH12568-closed. changes in entailments ------------------------------------------------------------------------ r35007 | dph | 2016-08-19 10:02:18 -0700 (Fri, 19 Aug 2016) | 2 lines Fixed the definition of GO:0004654 as described in GH12516. GH12516-closed. changes in entailments ------------------------------------------------------------------------ r34999 | termgenie | 2016-08-18 09:26:29 -0700 (Thu, 18 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 35000) +++ go_inferences.obo (working copy) @@ -89166,6 +89166,10 @@ is_a: GO:1905377 {is_inferred="true"} ! response to D-galactose [Term] +id: GO:1905379 ! beta-N-acetylhexosaminidase complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:1905380 ! regulation of snRNA transcription from RNA polymerase II promoter is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter ------------------------------------------------------------------------ r34998 | termgenie | 2016-08-18 09:20:14 -0700 (Thu, 18 Aug 2016) | 4 lines TermGenie commit for user: bhm reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34998) +++ go_inferences.obo (working copy) @@ -89166,6 +89166,20 @@ is_a: GO:1905377 {is_inferred="true"} ! response to D-galactose [Term] +id: GO:1905380 ! regulation of snRNA transcription from RNA polymerase II promoter +is_a: GO:0006357 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter + +[Term] +id: GO:1905381 ! negative regulation of snRNA transcription from RNA polymerase II promoter +is_a: GO:0000122 {is_inferred="true"} ! negative regulation of transcription from RNA polymerase II promoter +is_a: GO:1905380 {is_inferred="true"} ! regulation of snRNA transcription from RNA polymerase II promoter + +[Term] +id: GO:1905382 ! positive regulation of snRNA transcription from RNA polymerase II promoter +is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter +is_a: GO:1905380 {is_inferred="true"} ! regulation of snRNA transcription from RNA polymerase II promoter + +[Term] id: GO:1905383 ! protein localization to presynapse is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse ------------------------------------------------------------------------ r34996 | termgenie | 2016-08-18 08:44:36 -0700 (Thu, 18 Aug 2016) | 3 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34996) +++ go_inferences.obo (working copy) @@ -89157,6 +89157,15 @@ is_a: GO:1904959 {is_inferred="true"} ! regulation of cytochrome-c oxidase activity [Term] +id: GO:1905377 ! response to D-galactose +is_a: GO:0009746 {is_inferred="true"} ! response to hexose + +[Term] +id: GO:1905378 ! cellular response to D-galactose +is_a: GO:0071331 {is_inferred="true"} ! cellular response to hexose stimulus +is_a: GO:1905377 {is_inferred="true"} ! response to D-galactose + +[Term] id: GO:1905383 ! protein localization to presynapse is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse ------------------------------------------------------------------------ r34993 | termgenie | 2016-08-18 08:22:38 -0700 (Thu, 18 Aug 2016) | 2 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34994) +++ go_inferences.obo (working copy) @@ -89149,6 +89149,14 @@ is_a: GO:1905374 {is_inferred="true"} ! response to homocysteine [Term] +id: GO:1905376 ! negative regulation of cytochrome-c oxidase activity +is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity +is_a: GO:0051354 {is_inferred="true"} ! negative regulation of oxidoreductase activity +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1904733 {is_inferred="true"} ! negative regulation of electron carrier activity +is_a: GO:1904959 {is_inferred="true"} ! regulation of cytochrome-c oxidase activity + +[Term] id: GO:1905383 ! protein localization to presynapse is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse ------------------------------------------------------------------------ r34991 | termgenie | 2016-08-18 08:16:11 -0700 (Thu, 18 Aug 2016) | 3 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34992) +++ go_inferences.obo (working copy) @@ -89140,6 +89140,15 @@ is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process [Term] +id: GO:1905374 ! response to homocysteine +is_a: GO:0043200 {is_inferred="true"} ! response to amino acid + +[Term] +id: GO:1905375 ! cellular response to homocysteine +is_a: GO:0071230 {is_inferred="true"} ! cellular response to amino acid stimulus +is_a: GO:1905374 {is_inferred="true"} ! response to homocysteine + +[Term] id: GO:1905383 ! protein localization to presynapse is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse ------------------------------------------------------------------------ r34990 | termgenie | 2016-08-18 08:12:45 -0700 (Thu, 18 Aug 2016) | 4 lines TermGenie commit for user: dos reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34990) +++ go_inferences.obo (working copy) @@ -89144,6 +89144,20 @@ is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse [Term] +id: GO:1905384 ! regulation of protein localization to presynapse +is_a: GO:1902473 {is_inferred="true"} ! regulation of protein localization to synapse + +[Term] +id: GO:1905385 ! negative regulation of protein localization to presynapse +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905384 {is_inferred="true"} ! regulation of protein localization to presynapse + +[Term] +id: GO:1905386 ! positive regulation of protein localization to presynapse +is_a: GO:1902474 {is_inferred="true"} ! positive regulation of protein localization to synapse +is_a: GO:1905384 {is_inferred="true"} ! regulation of protein localization to presynapse + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34988 | davidos | 2016-08-18 08:05:13 -0700 (Thu, 18 Aug 2016) | 1 line presynaptic assembly terms #12220 + NTR: ASC-1 complex #12460 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34988) +++ go_inferences.obo (working copy) @@ -8597,6 +8597,7 @@ [Term] id: GO:0007416 ! synapse assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly +is_a: GO:0050808 {is_inferred="true"} ! synapse organization [Term] id: GO:0007444 ! imaginal disc development @@ -59663,11 +59664,13 @@ [Term] id: GO:0097104 ! postsynaptic membrane assembly +is_a: GO:0001941 {is_inferred="true"} ! postsynaptic membrane organization is_a: GO:0071709 {is_inferred="true"} ! membrane assembly [Term] id: GO:0097105 ! presynaptic membrane assembly is_a: GO:0071709 {is_inferred="true"} ! membrane assembly +is_a: GO:0097090 {is_inferred="true"} ! presynaptic membrane organization [Term] id: GO:0097106 ! postsynaptic density organization @@ -59676,6 +59679,7 @@ [Term] id: GO:0097107 ! postsynaptic density assembly is_a: GO:0070925 {is_inferred="true"} ! organelle assembly +is_a: GO:0097106 {is_inferred="true"} ! postsynaptic density organization [Term] id: GO:0097120 ! receptor localization to synapse @@ -61680,6 +61684,10 @@ is_a: GO:0099051 {is_inferred="true"} ! vesicle scission involved in endocytosis [Term] +id: GO:0099054 ! presynapse assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly + +[Term] id: GO:0099055 ! integral component of postsynaptic membrane is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane @@ -61748,6 +61756,10 @@ is_a: GO:0098955 {is_inferred="true"} ! intrinsic component of presynaptic endosome membrane [Term] +id: GO:0099068 ! postsynapse assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly + +[Term] id: GO:0099400 ! caveola neck is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region ------------------------------------------------------------------------ r34986 | termgenie | 2016-08-18 07:46:50 -0700 (Thu, 18 Aug 2016) | 2 lines TermGenie commit for user: dos reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34986) +++ go_inferences.obo (working copy) @@ -62078,8 +62078,8 @@ [Term] id: GO:0099641 ! anterograde axonal protein transport is_a: GO:0008089 {is_inferred="true"} ! anterograde axonal transport -is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0099640 {is_inferred="true"} ! axo-dendritic protein transport +is_a: GO:1905383 {is_inferred="true"} ! protein localization to presynapse [Term] id: GO:0099642 ! retrograde axonal protein transport @@ -62088,8 +62088,8 @@ [Term] id: GO:0099644 ! protein localization to presynaptic membrane -is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane +is_a: GO:1905383 {is_inferred="true"} ! protein localization to presynapse is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] @@ -89128,6 +89128,10 @@ is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process [Term] +id: GO:1905383 ! protein localization to presynapse +is_a: GO:0035418 {is_inferred="true"} ! protein localization to synapse + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34980 | termgenie | 2016-08-18 07:37:16 -0700 (Thu, 18 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34983) +++ go_inferences.obo (working copy) @@ -8893,6 +8893,10 @@ is_a: GO:0022414 {is_inferred="true"} ! reproductive process [Term] +id: GO:0008303 ! caspase complex +is_a: GO:1905369 {is_inferred="true"} ! endopeptidase complex + +[Term] id: GO:0008305 ! integrin complex is_a: GO:0098636 {is_inferred="true"} ! protein complex involved in cell adhesion is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -50988,7 +50992,7 @@ [Term] id: GO:0061672 ! glutathione hydrolase complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex [Term] id: GO:0061678 ! Entner-Doudoroff pathway @@ -88687,7 +88691,7 @@ [Term] id: GO:1905286 ! serine-type peptidase complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex [Term] id: GO:1905287 ! positive regulation of G2/M transition of mitotic cell cycle involved in cellular response to nitrogen starvation @@ -89094,6 +89098,19 @@ is_a: GO:1905365 {is_inferred="true"} ! regulation of intralumenal vesicle formation [Term] +id: GO:1905368 ! peptidase complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] +id: GO:1905369 ! endopeptidase complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex + +[Term] +id: GO:1905370 ! serine-type endopeptidase complex +is_a: GO:1905286 {is_inferred="true"} ! serine-type peptidase complex +is_a: GO:1905369 {is_inferred="true"} ! endopeptidase complex + +[Term] id: GO:1905371 ! ceramide phosphoethanolamine metabolic process is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process is_a: GO:0006665 {is_inferred="true"} ! sphingolipid metabolic process @@ -89984,7 +90001,7 @@ [Term] id: GO:1990850 ! H-gal-GP complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905368 {is_inferred="true"} ! peptidase complex [Term] id: GO:1990851 ! Wnt-Frizzled-LRP5/6 complex ------------------------------------------------------------------------ r34975 | termgenie | 2016-08-18 07:03:48 -0700 (Thu, 18 Aug 2016) | 4 lines TermGenie commit for user: bc reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34976) +++ go_inferences.obo (working copy) @@ -89077,6 +89077,23 @@ is_a: GO:0031338 {is_inferred="true"} ! regulation of vesicle fusion [Term] +id: GO:1905365 ! regulation of intralumenal vesicle formation +is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization +is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport + +[Term] +id: GO:1905366 ! negative regulation of intralumenal vesicle formation +is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization +is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport +is_a: GO:1905365 {is_inferred="true"} ! regulation of intralumenal vesicle formation + +[Term] +id: GO:1905367 ! positive regulation of intralumenal vesicle formation +is_a: GO:0010638 {is_inferred="true"} ! positive regulation of organelle organization +is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport +is_a: GO:1905365 {is_inferred="true"} ! regulation of intralumenal vesicle formation + +[Term] id: GO:1905371 ! ceramide phosphoethanolamine metabolic process is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process is_a: GO:0006665 {is_inferred="true"} ! sphingolipid metabolic process ------------------------------------------------------------------------ r34974 | termgenie | 2016-08-18 06:58:34 -0700 (Thu, 18 Aug 2016) | 2 lines TermGenie commit for user: bc reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34974) +++ go_inferences.obo (working copy) @@ -89063,6 +89063,20 @@ is_a: GO:0005215 {is_inferred="true"} ! transporter activity [Term] +id: GO:1905362 ! negative regulation of endosomal vesicle fusion +is_a: GO:0031339 {is_inferred="true"} ! negative regulation of vesicle fusion +is_a: GO:1905364 {is_inferred="true"} ! regulation of endosomal vesicle fusion + +[Term] +id: GO:1905363 ! positive regulation of endosomal vesicle fusion +is_a: GO:0031340 {is_inferred="true"} ! positive regulation of vesicle fusion +is_a: GO:1905364 {is_inferred="true"} ! regulation of endosomal vesicle fusion + +[Term] +id: GO:1905364 ! regulation of endosomal vesicle fusion +is_a: GO:0031338 {is_inferred="true"} ! regulation of vesicle fusion + +[Term] id: GO:1905371 ! ceramide phosphoethanolamine metabolic process is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process is_a: GO:0006665 {is_inferred="true"} ! sphingolipid metabolic process ------------------------------------------------------------------------ r34971 | mcourtot | 2016-08-18 05:26:47 -0700 (Thu, 18 Aug 2016) | 1 line removed goslim_pombe on GO:0098974 postsynaptic actin cytoskeleton organization as per https://github.com/geneontology/go-ontology/issues/12467 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34971) +++ go_inferences.obo (working copy) @@ -89064,16 +89064,19 @@ [Term] id: GO:1905371 ! ceramide phosphoethanolamine metabolic process -is_a: GO:0008152 {is_inferred="true"} ! metabolic process +is_a: GO:0006644 {is_inferred="true"} ! phospholipid metabolic process +is_a: GO:0006665 {is_inferred="true"} ! sphingolipid metabolic process [Term] id: GO:1905372 ! ceramide phosphoethanolamine catabolic process -is_a: GO:0009056 {is_inferred="true"} ! catabolic process +is_a: GO:0009395 {is_inferred="true"} ! phospholipid catabolic process +is_a: GO:0030149 {is_inferred="true"} ! sphingolipid catabolic process is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process [Term] id: GO:1905373 ! ceramide phosphoethanolamine biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0008654 {is_inferred="true"} ! phospholipid biosynthetic process +is_a: GO:0030148 {is_inferred="true"} ! sphingolipid biosynthetic process is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process [Term] ------------------------------------------------------------------------ r34960 | termgenie | 2016-08-16 11:36:23 -0700 (Tue, 16 Aug 2016) | 4 lines TermGenie commit for user: hjd reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34960) +++ go_inferences.obo (working copy) @@ -89063,6 +89063,20 @@ is_a: GO:0005215 {is_inferred="true"} ! transporter activity [Term] +id: GO:1905371 ! ceramide phosphoethanolamine metabolic process +is_a: GO:0008152 {is_inferred="true"} ! metabolic process + +[Term] +id: GO:1905372 ! ceramide phosphoethanolamine catabolic process +is_a: GO:0009056 {is_inferred="true"} ! catabolic process +is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process + +[Term] +id: GO:1905373 ! ceramide phosphoethanolamine biosynthetic process +is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:1905371 {is_inferred="true"} ! ceramide phosphoethanolamine metabolic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34958 | hjd | 2016-08-16 10:46:55 -0700 (Tue, 16 Aug 2016) | 2 lines added term for LI Ni: GO:0002950 changes in entailments ------------------------------------------------------------------------ r34954 | dph | 2016-08-16 04:59:09 -0700 (Tue, 16 Aug 2016) | 2 lines Removed taxon constraint for regulation of cell migration. changes in entailments ------------------------------------------------------------------------ r34932 | termgenie | 2016-08-15 01:19:41 -0700 (Mon, 15 Aug 2016) | 2 lines TermGenie commit for user: pde reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34932) +++ go_inferences.obo (working copy) @@ -14703,6 +14703,7 @@ id: GO:0015194 ! L-serine transmembrane transporter activity is_a: GO:0015179 {is_inferred="true"} ! L-amino acid transmembrane transporter activity is_a: GO:0022889 {is_inferred="true"} ! serine transmembrane transporter activity +is_a: GO:1905361 {is_inferred="true"} ! L-serine transporter activity [Term] id: GO:0015195 ! L-threonine transmembrane transporter activity @@ -89058,6 +89059,10 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] +id: GO:1905361 ! L-serine transporter activity +is_a: GO:0005215 {is_inferred="true"} ! transporter activity + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34885 | termgenie | 2016-08-12 02:05:50 -0700 (Fri, 12 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by mec changes in entailments ------------------------------------------------------------------------ r34885 | termgenie | 2016-08-12 02:05:50 -0700 (Fri, 12 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34888) +++ go_inferences.obo (working copy) @@ -5347,7 +5347,7 @@ id: GO:0005834 ! heterotrimeric G-protein complex is_a: GO:0044424 {is_inferred="true"} ! intracellular part is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905360 {is_inferred="true"} ! GTPase complex [Term] id: GO:0005836 ! fatty-acyl-CoA synthase complex @@ -89054,6 +89054,10 @@ is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton [Term] +id: GO:1905360 ! GTPase complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34866 | mcourtot | 2016-08-11 07:25:00 -0700 (Thu, 11 Aug 2016) | 1 line modified ILR20 and ILR28 as per https://github.com/geneontology/go-ontology/issues/12375, and created NTR estrogen 16-alpha-hydroxylase activity as per https://github.com/geneontology/go-ontology/issues/12576 changes in entailments ------------------------------------------------------------------------ r34862 | termgenie | 2016-08-11 02:54:15 -0700 (Thu, 11 Aug 2016) | 2 lines TermGenie commit for user: mah reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34862) +++ go_inferences.obo (working copy) @@ -74912,7 +74912,7 @@ [Term] id: GO:1902441 ! protein localization to meiotic spindle pole body is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton +is_a: GO:1905359 {is_inferred="true"} ! protein localization to meiotic spindle [Term] id: GO:1902442 ! regulation of ripoptosome assembly involved in necroptotic process @@ -78028,7 +78028,7 @@ [Term] id: GO:1903096 ! protein localization to meiotic spindle midzone -is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton +is_a: GO:1905359 {is_inferred="true"} ! protein localization to meiotic spindle [Term] id: GO:1903097 ! regulation of CENP-A containing nucleosome assembly @@ -89050,6 +89050,10 @@ is_a: GO:1905356 {is_inferred="true"} ! regulation of snRNA pseudouridine synthesis [Term] +id: GO:1905359 ! protein localization to meiotic spindle +is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34859 | dph | 2016-08-10 09:01:09 -0700 (Wed, 10 Aug 2016) | 2 lines Added part of relation between substrate localization to autophagosome and autophagosome assembly. changes in entailments ------------------------------------------------------------------------ r34854 | paola | 2016-08-10 06:12:45 -0700 (Wed, 10 Aug 2016) | 3 lines Stemming from GH 'cilium morphogenesis' and 'cilium assembly' #12236: changes in entailments ------------------------------------------------------------------------ r34848 | paola | 2016-08-10 03:35:19 -0700 (Wed, 10 Aug 2016) | 3 lines GH 'cilium morphogenesis' and 'cilium assembly' #12236 - work in progress - added GOC:cilia and PMID:27350441 as a dbxref to ‘cilium assembly’ and ‘cilium disassembly’. changes in entailments ------------------------------------------------------------------------ r34846 | termgenie | 2016-08-10 01:45:13 -0700 (Wed, 10 Aug 2016) | 4 lines TermGenie commit for user: se reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34846) +++ go_inferences.obo (working copy) @@ -89032,6 +89032,24 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] +id: GO:1905355 ! spine apparatus assembly +is_a: GO:0070925 {is_inferred="true"} ! organelle assembly + +[Term] +id: GO:1905356 ! regulation of snRNA pseudouridine synthesis +is_a: GO:0051252 {is_inferred="true"} ! regulation of RNA metabolic process + +[Term] +id: GO:1905357 ! negative regulation of snRNA pseudouridine synthesis +is_a: GO:0051253 {is_inferred="true"} ! negative regulation of RNA metabolic process +is_a: GO:1905356 {is_inferred="true"} ! regulation of snRNA pseudouridine synthesis + +[Term] +id: GO:1905358 ! positive regulation of snRNA pseudouridine synthesis +is_a: GO:0051254 {is_inferred="true"} ! positive regulation of RNA metabolic process +is_a: GO:1905356 {is_inferred="true"} ! regulation of snRNA pseudouridine synthesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34836 | paola | 2016-08-09 05:22:13 -0700 (Tue, 09 Aug 2016) | 2 lines Added to my last edit changes in entailments ------------------------------------------------------------------------ r34835 | paola | 2016-08-09 05:18:31 -0700 (Tue, 09 Aug 2016) | 3 lines GH NTR : lipid particle exit from endoplasmic reticulum as a child of intracellular lipid particle transport #12473 - closed - edited def and placement of GO:0035459 cargo loading into vesicle and descendants changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34835) +++ go_inferences.obo (working copy) @@ -69227,13 +69227,12 @@ [Term] id: GO:1901301 ! regulation of cargo loading into COPII-coated vesicle is_a: GO:0033043 {is_inferred="true"} ! regulation of organelle organization -is_a: GO:0043254 {is_inferred="true"} ! regulation of protein complex assembly +is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis is_a: GO:0060628 {is_inferred="true"} ! regulation of ER to Golgi vesicle-mediated transport [Term] id: GO:1901303 ! negative regulation of cargo loading into COPII-coated vesicle is_a: GO:0010639 {is_inferred="true"} ! negative regulation of organelle organization -is_a: GO:0031333 {is_inferred="true"} ! negative regulation of protein complex assembly is_a: GO:0032387 {is_inferred="true"} ! negative regulation of intracellular transport is_a: GO:1901301 {is_inferred="true"} ! regulation of cargo loading into COPII-coated vesicle ------------------------------------------------------------------------ r34829 | mcourtot | 2016-08-09 02:49:08 -0700 (Tue, 09 Aug 2016) | 1 line updated definition IL12R and IL23R as per https://github.com/geneontology/go-ontology/issues/12375 changes in entailments ------------------------------------------------------------------------ r34822 | hjd | 2016-08-08 13:17:56 -0700 (Mon, 08 Aug 2016) | 2 lines added more plant enzyme mapping function terms changes in entailments ------------------------------------------------------------------------ r34819 | mcourtot | 2016-08-08 08:05:21 -0700 (Mon, 08 Aug 2016) | 1 line added part of nucleolus GO:0101019 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34819) +++ go_inferences.obo (working copy) @@ -62436,6 +62436,11 @@ is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process [Term] +id: GO:0101019 ! nucleolar exosome (RNase complex) +is_a: GO:0000176 {is_inferred="true"} ! nuclear exosome (RNase complex) +is_a: GO:0044452 {is_inferred="true"} ! nucleolar part + +[Term] id: GO:1900000 ! regulation of anthocyanin catabolic process is_a: GO:0009894 {is_inferred="true"} ! regulation of catabolic process is_a: GO:0031537 {is_inferred="true"} ! regulation of anthocyanin metabolic process ------------------------------------------------------------------------ r34816 | mcourtot | 2016-08-08 07:35:38 -0700 (Mon, 08 Aug 2016) | 1 line removed wrong synonyms GO:0101019 changes in entailments ------------------------------------------------------------------------ r34814 | mcourtot | 2016-08-08 07:13:34 -0700 (Mon, 08 Aug 2016) | 1 line closes https://github.com/geneontology/go-ontology/issues/12574 changes in entailments ------------------------------------------------------------------------ r34812 | dph | 2016-08-08 05:39:42 -0700 (Mon, 08 Aug 2016) | 2 lines Tweaked the definition of GO:0031297. changes in entailments ------------------------------------------------------------------------ r34810 | termgenie | 2016-08-08 05:26:18 -0700 (Mon, 08 Aug 2016) | 2 lines TermGenie commit for user: rph reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34810) +++ go_inferences.obo (working copy) @@ -89012,6 +89012,10 @@ is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly [Term] +id: GO:1905351 ! pericyte cell migration +is_a: GO:0016477 {is_inferred="true"} ! cell migration + +[Term] id: GO:1905352 ! ciliary necklace assembly is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly ------------------------------------------------------------------------ r34808 | termgenie | 2016-08-08 05:12:31 -0700 (Mon, 08 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34808) +++ go_inferences.obo (working copy) @@ -89020,6 +89020,10 @@ is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly [Term] +id: GO:1905354 ! exoribonuclease complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34769 | dph | 2016-08-05 12:07:28 -0700 (Fri, 05 Aug 2016) | 2 lines GH12566-closed. changes in entailments ------------------------------------------------------------------------ r34767 | dph | 2016-08-05 09:34:30 -0700 (Fri, 05 Aug 2016) | 2 lines GH12570-closed. changes in entailments ------------------------------------------------------------------------ r34765 | dph | 2016-08-05 09:27:31 -0700 (Fri, 05 Aug 2016) | 2 lines GH12571-closed. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34765) +++ go_inferences.obo (working copy) @@ -51112,6 +51112,11 @@ is_a: GO:0044452 {is_inferred="true"} ! nucleolar part [Term] +id: GO:0061779 ! Tapasin-ERp57 complex +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part +is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r34763 | dph | 2016-08-05 08:50:04 -0700 (Fri, 05 Aug 2016) | 2 lines I added back the relation that 'cellular developmental process' is_a 'single-organism developmental process'. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34763) +++ go_inferences.obo (working copy) @@ -1252,7 +1252,6 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0022602 {is_inferred="true"} ! ovulation cycle process is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0001550 ! ovarian cumulus expansion @@ -8426,7 +8425,6 @@ [Term] id: GO:0007278 ! pole cell fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007279 ! pole cell formation @@ -8476,7 +8474,6 @@ [Term] id: GO:0007294 ! germarium-derived oocyte fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007295 ! growth of a germarium-derived egg chamber @@ -8622,7 +8619,6 @@ [Term] id: GO:0007531 ! mating type determination is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007534 ! gene conversion at mating-type locus @@ -8631,7 +8627,6 @@ [Term] id: GO:0007535 ! donor selection is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007543 ! sex determination, somatic-gonadal interaction @@ -10480,7 +10475,6 @@ [Term] id: GO:0009560 ! embryo sac egg cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009568 ! amyloplast starch grain @@ -11137,7 +11131,6 @@ [Term] id: GO:0009994 ! oocyte differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009996 ! negative regulation of cell fate specification @@ -11303,7 +11296,6 @@ id: GO:0010059 ! positive regulation of atrichoblast fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11311,7 +11303,6 @@ id: GO:0010060 ! negative regulation of atrichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11325,7 +11316,6 @@ id: GO:0010062 ! negative regulation of trichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11333,7 +11323,6 @@ id: GO:0010063 ! positive regulation of trichoblast fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11604,7 +11593,6 @@ [Term] id: GO:0010198 ! synergid death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010200 ! response to chitin @@ -11640,7 +11628,6 @@ [Term] id: GO:0010234 ! anther wall tapetum cell fate specification is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010236 ! plastoquinone biosynthetic process @@ -12044,7 +12031,6 @@ [Term] id: GO:0010480 ! microsporocyte differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048533 {is_inferred="true"} ! sporocyte differentiation [Term] @@ -12604,7 +12590,6 @@ [Term] id: GO:0010654 ! apical cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010656 ! negative regulation of muscle cell apoptotic process @@ -12836,12 +12821,10 @@ [Term] id: GO:0010720 ! positive regulation of cell development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] id: GO:0010721 ! negative regulation of cell development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] @@ -20346,7 +20329,6 @@ [Term] id: GO:0030220 ! platelet formation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] @@ -21249,13 +21231,11 @@ id: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0030860 ! regulation of polarized epithelial cell differentiation @@ -21715,7 +21695,6 @@ [Term] id: GO:0031149 ! sorocarp stalk cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0031152 ! aggregation involved in sorocarp development @@ -22417,7 +22396,6 @@ [Term] id: GO:0031494 ! regulation of mating type switching is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] @@ -22424,7 +22402,6 @@ id: GO:0031495 ! negative regulation of mating type switching is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -22431,7 +22408,6 @@ id: GO:0031496 ! positive regulation of mating type switching is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -25883,7 +25859,6 @@ [Term] id: GO:0032989 ! cellular component morphogenesis is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0032990 ! cell part morphogenesis @@ -26784,7 +26759,6 @@ [Term] id: GO:0033327 ! Leydig cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0033329 ! kaempferol O-glucoside metabolic process @@ -29020,7 +28994,6 @@ [Term] id: GO:0035047 ! centrosomal and pronuclear rotation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035050 ! embryonic heart tube development @@ -29094,7 +29067,6 @@ [Term] id: GO:0035155 ! negative regulation of terminal cell fate specification, open tracheal system is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29101,7 +29073,6 @@ [Term] id: GO:0035157 ! negative regulation of fusion cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29184,7 +29155,6 @@ [Term] id: GO:0035234 ! ectopic germ cell programmed cell death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035238 ! vitamin A biosynthetic process @@ -32712,7 +32682,6 @@ id: GO:0042683 ! negative regulation of compound eye cone cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0042682 {is_inferred="true"} ! regulation of compound eye cone cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -35648,7 +35617,6 @@ [Term] id: GO:0044671 ! sorocarp spore cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0044673 ! 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase complex @@ -36970,7 +36938,6 @@ id: GO:0045476 ! nurse cell apoptotic process is_a: GO:0010623 {is_inferred="true"} ! programmed cell death involved in cell development is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:1902742 {is_inferred="true"} ! apoptotic process involved in development [Term] @@ -37344,6 +37311,7 @@ [Term] id: GO:0045595 ! regulation of cell differentiation +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] @@ -37350,11 +37318,13 @@ id: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0045598 ! regulation of fat cell differentiation @@ -37807,7 +37777,6 @@ id: GO:0045689 ! negative regulation of antipodal cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37814,7 +37783,6 @@ id: GO:0045690 ! positive regulation of antipodal cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37826,7 +37794,6 @@ id: GO:0045692 ! negative regulation of embryo sac central cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37833,7 +37800,6 @@ id: GO:0045693 ! positive regulation of embryo sac central cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37848,7 +37814,6 @@ is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -37856,7 +37821,6 @@ is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -37868,7 +37832,6 @@ id: GO:0045698 ! negative regulation of synergid differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37875,7 +37838,6 @@ id: GO:0045699 ! positive regulation of synergid differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -42426,12 +42388,10 @@ [Term] id: GO:0048235 ! pollen sperm cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048236 ! plant-type spore development is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] @@ -42830,10 +42790,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0048468 ! cell development -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0048469 ! cell maturation is_a: GO:0021700 {is_inferred="true"} ! developmental maturation @@ -42904,7 +42860,6 @@ id: GO:0048515 ! spermatid differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0030154 {is_inferred="true"} ! cell differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048518 ! positive regulation of biological process @@ -43070,7 +43025,6 @@ [Term] id: GO:0048600 ! oocyte fate commitment is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048601 ! oocyte morphogenesis @@ -43160,7 +43114,6 @@ [Term] id: GO:0048657 ! anther wall tapetum cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048660 ! regulation of smooth muscle cell proliferation @@ -45016,18 +44969,15 @@ [Term] id: GO:0051147 ! regulation of muscle cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0051148 ! negative regulation of muscle cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] id: GO:0051149 ! positive regulation of muscle cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] @@ -47628,7 +47578,6 @@ id: GO:0060008 ! Sertoli cell differentiation is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060009 ! Sertoli cell development @@ -47638,7 +47587,6 @@ [Term] id: GO:0060010 ! Sertoli cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0072148 {is_inferred="true"} ! epithelial cell fate commitment [Term] @@ -48184,7 +48132,6 @@ [Term] id: GO:0060284 ! regulation of cell development is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0060287 ! epithelial cilium movement involved in determination of left/right asymmetry @@ -48815,7 +48762,6 @@ [Term] id: GO:0060530 ! smooth muscle cell differentiation involved in prostate glandular acinus development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0051145 {is_inferred="true"} ! smooth muscle cell differentiation [Term] @@ -49318,7 +49264,6 @@ id: GO:0060706 ! cell differentiation involved in embryonic placenta development is_a: GO:0030154 {is_inferred="true"} ! cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060710 ! chorio-allantoic fusion @@ -49454,7 +49399,6 @@ id: GO:0060742 ! epithelial cell differentiation involved in prostate gland development is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060743 ! epithelial cell maturation involved in prostate gland development @@ -55334,6 +55278,7 @@ [Term] id: GO:0071998 ! ascospore release from ascus +is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -59281,14 +59226,6 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] -id: GO:0090376 ! seed trichome differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] -id: GO:0090377 ! seed trichome initiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0090379 ! secondary cell wall biogenesis involved in seed trichome differentiation is_a: GO:0009834 {is_inferred="true"} ! plant-type secondary cell wall biogenesis is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -62652,7 +62589,6 @@ is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1900032 {is_inferred="true"} ! regulation of trichome patterning @@ -88373,7 +88309,6 @@ [Term] id: GO:1905208 ! negative regulation of cardiocyte differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88380,7 +88315,6 @@ [Term] id: GO:1905209 ! positive regulation of cardiocyte differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88775,7 +88709,6 @@ [Term] id: GO:1905293 ! negative regulation of neural crest cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -88782,7 +88715,6 @@ [Term] id: GO:1905294 ! positive regulation of neural crest cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -95434,13 +95366,11 @@ [Term] id: GO:2001050 ! negative regulation of tendon cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] id: GO:2001051 ! positive regulation of tendon cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] ------------------------------------------------------------------------ r34761 | dph | 2016-08-05 08:13:18 -0700 (Fri, 05 Aug 2016) | 2 lines Removed the is_a relation between 'cellular develo0pmental process' and 'developmental process' that I added yesterday. It turns out that it was not necessary because 'cellular developmental process' was already a single-organism developmental process. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34761) +++ go_inferences.obo (working copy) @@ -1252,6 +1252,7 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0022602 {is_inferred="true"} ! ovulation cycle process is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0001550 ! ovarian cumulus expansion @@ -8425,6 +8426,7 @@ [Term] id: GO:0007278 ! pole cell fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007279 ! pole cell formation @@ -8474,6 +8476,7 @@ [Term] id: GO:0007294 ! germarium-derived oocyte fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007295 ! growth of a germarium-derived egg chamber @@ -8619,6 +8622,7 @@ [Term] id: GO:0007531 ! mating type determination is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007534 ! gene conversion at mating-type locus @@ -8627,6 +8631,7 @@ [Term] id: GO:0007535 ! donor selection is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007543 ! sex determination, somatic-gonadal interaction @@ -10475,6 +10480,7 @@ [Term] id: GO:0009560 ! embryo sac egg cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009568 ! amyloplast starch grain @@ -11131,6 +11137,7 @@ [Term] id: GO:0009994 ! oocyte differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009996 ! negative regulation of cell fate specification @@ -11296,6 +11303,7 @@ id: GO:0010059 ! positive regulation of atrichoblast fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11303,6 +11311,7 @@ id: GO:0010060 ! negative regulation of atrichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11316,6 +11325,7 @@ id: GO:0010062 ! negative regulation of trichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11323,6 +11333,7 @@ id: GO:0010063 ! positive regulation of trichoblast fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11593,6 +11604,7 @@ [Term] id: GO:0010198 ! synergid death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010200 ! response to chitin @@ -11628,6 +11640,7 @@ [Term] id: GO:0010234 ! anther wall tapetum cell fate specification is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010236 ! plastoquinone biosynthetic process @@ -12031,6 +12044,7 @@ [Term] id: GO:0010480 ! microsporocyte differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048533 {is_inferred="true"} ! sporocyte differentiation [Term] @@ -12590,6 +12604,7 @@ [Term] id: GO:0010654 ! apical cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010656 ! negative regulation of muscle cell apoptotic process @@ -12821,10 +12836,12 @@ [Term] id: GO:0010720 ! positive regulation of cell development +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] id: GO:0010721 ! negative regulation of cell development +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] @@ -20329,6 +20346,7 @@ [Term] id: GO:0030220 ! platelet formation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] @@ -21231,11 +21249,13 @@ id: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0030860 ! regulation of polarized epithelial cell differentiation @@ -21695,6 +21715,7 @@ [Term] id: GO:0031149 ! sorocarp stalk cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0031152 ! aggregation involved in sorocarp development @@ -22396,6 +22417,7 @@ [Term] id: GO:0031494 ! regulation of mating type switching is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] @@ -22402,6 +22424,7 @@ id: GO:0031495 ! negative regulation of mating type switching is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -22408,6 +22431,7 @@ id: GO:0031496 ! positive regulation of mating type switching is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -25859,6 +25883,7 @@ [Term] id: GO:0032989 ! cellular component morphogenesis is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0032990 ! cell part morphogenesis @@ -26759,6 +26784,7 @@ [Term] id: GO:0033327 ! Leydig cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0033329 ! kaempferol O-glucoside metabolic process @@ -28994,6 +29020,7 @@ [Term] id: GO:0035047 ! centrosomal and pronuclear rotation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035050 ! embryonic heart tube development @@ -29067,6 +29094,7 @@ [Term] id: GO:0035155 ! negative regulation of terminal cell fate specification, open tracheal system is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29073,6 +29101,7 @@ [Term] id: GO:0035157 ! negative regulation of fusion cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29155,6 +29184,7 @@ [Term] id: GO:0035234 ! ectopic germ cell programmed cell death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035238 ! vitamin A biosynthetic process @@ -32682,6 +32712,7 @@ id: GO:0042683 ! negative regulation of compound eye cone cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0042682 {is_inferred="true"} ! regulation of compound eye cone cell fate specification +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -35617,6 +35648,7 @@ [Term] id: GO:0044671 ! sorocarp spore cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0044673 ! 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase complex @@ -36938,6 +36970,7 @@ id: GO:0045476 ! nurse cell apoptotic process is_a: GO:0010623 {is_inferred="true"} ! programmed cell death involved in cell development is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:1902742 {is_inferred="true"} ! apoptotic process involved in development [Term] @@ -37311,7 +37344,6 @@ [Term] id: GO:0045595 ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] @@ -37318,13 +37350,11 @@ id: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0045598 ! regulation of fat cell differentiation @@ -37777,6 +37807,7 @@ id: GO:0045689 ! negative regulation of antipodal cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37783,6 +37814,7 @@ id: GO:0045690 ! positive regulation of antipodal cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37794,6 +37826,7 @@ id: GO:0045692 ! negative regulation of embryo sac central cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37800,6 +37833,7 @@ id: GO:0045693 ! positive regulation of embryo sac central cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37814,6 +37848,7 @@ is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -37821,6 +37856,7 @@ is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -37832,6 +37868,7 @@ id: GO:0045698 ! negative regulation of synergid differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37838,6 +37875,7 @@ id: GO:0045699 ! positive regulation of synergid differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -42388,10 +42426,12 @@ [Term] id: GO:0048235 ! pollen sperm cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048236 ! plant-type spore development is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] @@ -42790,6 +42830,10 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] +id: GO:0048468 ! cell development +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] id: GO:0048469 ! cell maturation is_a: GO:0021700 {is_inferred="true"} ! developmental maturation @@ -42860,6 +42904,7 @@ id: GO:0048515 ! spermatid differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0030154 {is_inferred="true"} ! cell differentiation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048518 ! positive regulation of biological process @@ -43025,6 +43070,7 @@ [Term] id: GO:0048600 ! oocyte fate commitment is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048601 ! oocyte morphogenesis @@ -43114,6 +43160,7 @@ [Term] id: GO:0048657 ! anther wall tapetum cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048660 ! regulation of smooth muscle cell proliferation @@ -43497,10 +43544,6 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] -id: GO:0048869 ! cellular developmental process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0048878 ! chemical homeostasis is_a: GO:0042592 {is_inferred="true"} ! homeostatic process @@ -44973,15 +45016,18 @@ [Term] id: GO:0051147 ! regulation of muscle cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0051148 ! negative regulation of muscle cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] id: GO:0051149 ! positive regulation of muscle cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] @@ -47582,6 +47628,7 @@ id: GO:0060008 ! Sertoli cell differentiation is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060009 ! Sertoli cell development @@ -47591,6 +47638,7 @@ [Term] id: GO:0060010 ! Sertoli cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0072148 {is_inferred="true"} ! epithelial cell fate commitment [Term] @@ -48136,6 +48184,7 @@ [Term] id: GO:0060284 ! regulation of cell development is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0060287 ! epithelial cilium movement involved in determination of left/right asymmetry @@ -48766,6 +48815,7 @@ [Term] id: GO:0060530 ! smooth muscle cell differentiation involved in prostate glandular acinus development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0051145 {is_inferred="true"} ! smooth muscle cell differentiation [Term] @@ -49268,6 +49318,7 @@ id: GO:0060706 ! cell differentiation involved in embryonic placenta development is_a: GO:0030154 {is_inferred="true"} ! cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060710 ! chorio-allantoic fusion @@ -49403,6 +49454,7 @@ id: GO:0060742 ! epithelial cell differentiation involved in prostate gland development is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060743 ! epithelial cell maturation involved in prostate gland development @@ -55282,7 +55334,6 @@ [Term] id: GO:0071998 ! ascospore release from ascus -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -59230,6 +59281,14 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] +id: GO:0090376 ! seed trichome differentiation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] +id: GO:0090377 ! seed trichome initiation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] id: GO:0090379 ! secondary cell wall biogenesis involved in seed trichome differentiation is_a: GO:0009834 {is_inferred="true"} ! plant-type secondary cell wall biogenesis is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -62593,6 +62652,7 @@ is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1900032 {is_inferred="true"} ! regulation of trichome patterning @@ -88313,6 +88373,7 @@ [Term] id: GO:1905208 ! negative regulation of cardiocyte differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88319,6 +88380,7 @@ [Term] id: GO:1905209 ! positive regulation of cardiocyte differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88713,6 +88775,7 @@ [Term] id: GO:1905293 ! negative regulation of neural crest cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -88719,6 +88782,7 @@ [Term] id: GO:1905294 ! positive regulation of neural crest cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -95370,11 +95434,13 @@ [Term] id: GO:2001050 ! negative regulation of tendon cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] id: GO:2001051 ! positive regulation of tendon cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] ------------------------------------------------------------------------ r34759 | paola | 2016-08-05 07:20:07 -0700 (Fri, 05 Aug 2016) | 3 lines GH NTRs/OTRs: New cilium assembly terms and references to Reactome IDs #12572 - work in progress - added GO:0097711 ‘ciliary basal body docking’ and GO:0097712 ’vesicle targeting, trans-Golgi to periciliary membrane compartment’ changes in entailments ------------------------------------------------------------------------ r34757 | termgenie | 2016-08-05 07:05:07 -0700 (Fri, 05 Aug 2016) | 3 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34757) +++ go_inferences.obo (working copy) @@ -89011,6 +89011,14 @@ is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly [Term] +id: GO:1905352 ! ciliary necklace assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] +id: GO:1905353 ! ciliary transition fiber assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34740 | paola | 2016-08-04 09:25:57 -0700 (Thu, 04 Aug 2016) | 3 lines GH NTRs/OTRs: New cilium assembly terms and references to Reactome IDs #12572 - work in progress - added links ‘MKS complex’ and ‘NPHP complex’ capable_of_part_of ‘Y-shaped link assembly’ changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34740) +++ go_inferences.obo (working copy) @@ -1252,7 +1252,6 @@ is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0022602 {is_inferred="true"} ! ovulation cycle process is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0001550 ! ovarian cumulus expansion @@ -8426,7 +8425,6 @@ [Term] id: GO:0007278 ! pole cell fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007279 ! pole cell formation @@ -8476,7 +8474,6 @@ [Term] id: GO:0007294 ! germarium-derived oocyte fate determination is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007295 ! growth of a germarium-derived egg chamber @@ -8622,7 +8619,6 @@ [Term] id: GO:0007531 ! mating type determination is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007534 ! gene conversion at mating-type locus @@ -8631,7 +8627,6 @@ [Term] id: GO:0007535 ! donor selection is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0007543 ! sex determination, somatic-gonadal interaction @@ -10480,7 +10475,6 @@ [Term] id: GO:0009560 ! embryo sac egg cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009568 ! amyloplast starch grain @@ -11137,7 +11131,6 @@ [Term] id: GO:0009994 ! oocyte differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0009996 ! negative regulation of cell fate specification @@ -11303,7 +11296,6 @@ id: GO:0010059 ! positive regulation of atrichoblast fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11311,7 +11303,6 @@ id: GO:0010060 ! negative regulation of atrichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010058 {is_inferred="true"} ! regulation of atrichoblast fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11325,7 +11316,6 @@ id: GO:0010062 ! negative regulation of trichoblast fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1903889 {is_inferred="true"} ! negative regulation of plant epidermal cell differentiation @@ -11333,7 +11323,6 @@ id: GO:0010063 ! positive regulation of trichoblast fate specification is_a: GO:0010061 {is_inferred="true"} ! regulation of trichoblast fate specification is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1903890 {is_inferred="true"} ! positive regulation of plant epidermal cell differentiation @@ -11604,7 +11593,6 @@ [Term] id: GO:0010198 ! synergid death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010200 ! response to chitin @@ -11640,7 +11628,6 @@ [Term] id: GO:0010234 ! anther wall tapetum cell fate specification is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010236 ! plastoquinone biosynthetic process @@ -12044,7 +12031,6 @@ [Term] id: GO:0010480 ! microsporocyte differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048533 {is_inferred="true"} ! sporocyte differentiation [Term] @@ -12604,7 +12590,6 @@ [Term] id: GO:0010654 ! apical cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0010656 ! negative regulation of muscle cell apoptotic process @@ -12836,12 +12821,10 @@ [Term] id: GO:0010720 ! positive regulation of cell development -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] id: GO:0010721 ! negative regulation of cell development -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development [Term] @@ -20346,7 +20329,6 @@ [Term] id: GO:0030220 ! platelet formation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] @@ -21249,13 +21231,11 @@ id: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0030860 ! regulation of polarized epithelial cell differentiation @@ -21715,7 +21695,6 @@ [Term] id: GO:0031149 ! sorocarp stalk cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0031152 ! aggregation involved in sorocarp development @@ -22417,7 +22396,6 @@ [Term] id: GO:0031494 ! regulation of mating type switching is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] @@ -22424,7 +22402,6 @@ id: GO:0031495 ! negative regulation of mating type switching is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -22431,7 +22408,6 @@ id: GO:0031496 ! positive regulation of mating type switching is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment is_a: GO:0031494 {is_inferred="true"} ! regulation of mating type switching -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -25883,7 +25859,6 @@ [Term] id: GO:0032989 ! cellular component morphogenesis is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0032990 ! cell part morphogenesis @@ -26784,7 +26759,6 @@ [Term] id: GO:0033327 ! Leydig cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0033329 ! kaempferol O-glucoside metabolic process @@ -29020,7 +28994,6 @@ [Term] id: GO:0035047 ! centrosomal and pronuclear rotation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035050 ! embryonic heart tube development @@ -29094,7 +29067,6 @@ [Term] id: GO:0035155 ! negative regulation of terminal cell fate specification, open tracheal system is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29101,7 +29073,6 @@ [Term] id: GO:0035157 ! negative regulation of fusion cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development @@ -29184,7 +29155,6 @@ [Term] id: GO:0035234 ! ectopic germ cell programmed cell death is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0035238 ! vitamin A biosynthetic process @@ -32712,7 +32682,6 @@ id: GO:0042683 ! negative regulation of compound eye cone cell fate specification is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0042682 {is_inferred="true"} ! regulation of compound eye cone cell fate specification -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -35648,7 +35617,6 @@ [Term] id: GO:0044671 ! sorocarp spore cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0044673 ! 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase complex @@ -36970,7 +36938,6 @@ id: GO:0045476 ! nurse cell apoptotic process is_a: GO:0010623 {is_inferred="true"} ! programmed cell death involved in cell development is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:1902742 {is_inferred="true"} ! apoptotic process involved in development [Term] @@ -37344,6 +37311,7 @@ [Term] id: GO:0045595 ! regulation of cell differentiation +is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process [Term] @@ -37350,11 +37318,13 @@ id: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process [Term] id: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process [Term] id: GO:0045598 ! regulation of fat cell differentiation @@ -37807,7 +37777,6 @@ id: GO:0045689 ! negative regulation of antipodal cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37814,7 +37783,6 @@ id: GO:0045690 ! positive regulation of antipodal cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045688 {is_inferred="true"} ! regulation of antipodal cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37826,7 +37794,6 @@ id: GO:0045692 ! negative regulation of embryo sac central cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37833,7 +37800,6 @@ id: GO:0045693 ! positive regulation of embryo sac central cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045691 {is_inferred="true"} ! regulation of embryo sac central cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -37848,7 +37814,6 @@ is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] @@ -37856,7 +37821,6 @@ is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045694 {is_inferred="true"} ! regulation of embryo sac egg cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2000243 {is_inferred="true"} ! positive regulation of reproductive process [Term] @@ -37868,7 +37832,6 @@ id: GO:0045698 ! negative regulation of synergid differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process [Term] @@ -37875,7 +37838,6 @@ id: GO:0045699 ! positive regulation of synergid differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation is_a: GO:0045697 {is_inferred="true"} ! regulation of synergid differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] @@ -42426,12 +42388,10 @@ [Term] id: GO:0048235 ! pollen sperm cell differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048236 ! plant-type spore development is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] @@ -42830,10 +42790,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0048468 ! cell development -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0048469 ! cell maturation is_a: GO:0021700 {is_inferred="true"} ! developmental maturation @@ -42904,7 +42860,6 @@ id: GO:0048515 ! spermatid differentiation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0030154 {is_inferred="true"} ! cell differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048518 ! positive regulation of biological process @@ -43070,7 +43025,6 @@ [Term] id: GO:0048600 ! oocyte fate commitment is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048601 ! oocyte morphogenesis @@ -43160,7 +43114,6 @@ [Term] id: GO:0048657 ! anther wall tapetum cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0048660 ! regulation of smooth muscle cell proliferation @@ -43544,6 +43497,10 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] +id: GO:0048869 ! cellular developmental process +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process + +[Term] id: GO:0048878 ! chemical homeostasis is_a: GO:0042592 {is_inferred="true"} ! homeostatic process @@ -45016,18 +44973,15 @@ [Term] id: GO:0051147 ! regulation of muscle cell differentiation is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0051148 ! negative regulation of muscle cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] id: GO:0051149 ! positive regulation of muscle cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051147 {is_inferred="true"} ! regulation of muscle cell differentiation [Term] @@ -47628,7 +47582,6 @@ id: GO:0060008 ! Sertoli cell differentiation is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060009 ! Sertoli cell development @@ -47638,7 +47591,6 @@ [Term] id: GO:0060010 ! Sertoli cell fate commitment is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0072148 {is_inferred="true"} ! epithelial cell fate commitment [Term] @@ -48184,7 +48136,6 @@ [Term] id: GO:0060284 ! regulation of cell development is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process [Term] id: GO:0060287 ! epithelial cilium movement involved in determination of left/right asymmetry @@ -48815,7 +48766,6 @@ [Term] id: GO:0060530 ! smooth muscle cell differentiation involved in prostate glandular acinus development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0051145 {is_inferred="true"} ! smooth muscle cell differentiation [Term] @@ -49318,7 +49268,6 @@ id: GO:0060706 ! cell differentiation involved in embryonic placenta development is_a: GO:0030154 {is_inferred="true"} ! cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060710 ! chorio-allantoic fusion @@ -49454,7 +49403,6 @@ id: GO:0060742 ! epithelial cell differentiation involved in prostate gland development is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process [Term] id: GO:0060743 ! epithelial cell maturation involved in prostate gland development @@ -55334,6 +55282,7 @@ [Term] id: GO:0071998 ! ascospore release from ascus +is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process @@ -59281,14 +59230,6 @@ is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] -id: GO:0090376 ! seed trichome differentiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] -id: GO:0090377 ! seed trichome initiation -is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process - -[Term] id: GO:0090379 ! secondary cell wall biogenesis involved in seed trichome differentiation is_a: GO:0009834 {is_inferred="true"} ! plant-type secondary cell wall biogenesis is_a: GO:0022414 {is_inferred="true"} ! reproductive process @@ -62652,7 +62593,6 @@ is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment is_a: GO:0010648 {is_inferred="true"} ! negative regulation of cell communication is_a: GO:0023057 {is_inferred="true"} ! negative regulation of signaling -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1900032 {is_inferred="true"} ! regulation of trichome patterning @@ -88373,7 +88313,6 @@ [Term] id: GO:1905208 ! negative regulation of cardiocyte differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88380,7 +88319,6 @@ [Term] id: GO:1905209 ! positive regulation of cardiocyte differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation @@ -88775,7 +88713,6 @@ [Term] id: GO:1905293 ! negative regulation of neural crest cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -88782,7 +88719,6 @@ [Term] id: GO:1905294 ! positive regulation of neural crest cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation @@ -95426,13 +95362,11 @@ [Term] id: GO:2001050 ! negative regulation of tendon cell differentiation is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] id: GO:2001051 ! positive regulation of tendon cell differentiation is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:2001049 {is_inferred="true"} ! regulation of tendon cell differentiation [Term] ------------------------------------------------------------------------ r34737 | termgenie | 2016-08-04 09:12:38 -0700 (Thu, 04 Aug 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34737) +++ go_inferences.obo (working copy) @@ -89071,6 +89071,10 @@ is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly [Term] +id: GO:1905350 ! Y-shaped link assembly +is_a: GO:0006461 {is_inferred="true"} ! protein complex assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34735 | paola | 2016-08-04 08:00:12 -0700 (Thu, 04 Aug 2016) | 3 lines GH NTRs/OTRs: New cilium assembly terms and references to Reactome IDs #12572 - work in progress - edited ‘ciliary transition zone’, see ticket for details changes in entailments ------------------------------------------------------------------------ r34733 | termgenie | 2016-08-04 07:53:14 -0700 (Thu, 04 Aug 2016) | 2 lines TermGenie commit for user: pr reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34733) +++ go_inferences.obo (working copy) @@ -89067,6 +89067,10 @@ is_a: GO:1902494 {is_inferred="true"} ! catalytic complex [Term] +id: GO:1905349 ! ciliary transition zone assembly +is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34731 | paola | 2016-08-04 07:44:37 -0700 (Thu, 04 Aug 2016) | 3 lines GH NTRs/OTRs: New cilium assembly terms and references to Reactome IDs #12572 - work in progress: changes in entailments ------------------------------------------------------------------------ r34729 | paola | 2016-08-04 05:56:28 -0700 (Thu, 04 Aug 2016) | 3 lines GH Taxon rule for 'gap junction' terms #10926 - closed - see ticket for details changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34729) +++ go_inferences.obo (working copy) @@ -5458,7 +5458,7 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] -id: GO:0005922 ! connexon complex +id: GO:0005922 ! connexin complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] ------------------------------------------------------------------------ r34721 | foulger | 2016-08-04 03:31:24 -0700 (Thu, 04 Aug 2016) | 7 lines Added ‘protein repair’ parent to new ‘protein deglycation ; GO:0036525’ term. changes in entailments ------------------------------------------------------------------------ r34721 | foulger | 2016-08-04 03:31:24 -0700 (Thu, 04 Aug 2016) | 7 lines Added ‘protein repair’ parent to new ‘protein deglycation ; GO:0036525’ term. changes in entailments ------------------------------------------------------------------------ r34719 | foulger | 2016-08-04 02:53:36 -0700 (Thu, 04 Aug 2016) | 11 lines Github: 12550 changes in entailments ------------------------------------------------------------------------ r34717 | foulger | 2016-08-04 02:09:01 -0700 (Thu, 04 Aug 2016) | 3 lines Added initials and reference definition DBXref to GO:0090676 changes in entailments ------------------------------------------------------------------------ r34714 | termgenie | 2016-08-03 09:30:33 -0700 (Wed, 03 Aug 2016) | 2 lines TermGenie commit for user: bhm reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34714) +++ go_inferences.obo (working copy) @@ -423,8 +423,8 @@ [Term] id: GO:0000214 ! tRNA-intron endonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex +is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:0000220 ! vacuolar proton-transporting V-type ATPase, V0 domain @@ -10300,7 +10300,7 @@ [Term] id: GO:0009359 ! Type II site-specific deoxyribonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905347 {is_inferred="true"} ! endodeoxyribonuclease complex [Term] id: GO:0009365 ! protein histidine kinase complex @@ -10320,7 +10320,7 @@ [Term] id: GO:0009380 ! excinuclease repair complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905347 {is_inferred="true"} ! endodeoxyribonuclease complex is_a: GO:1990391 {is_inferred="true"} ! DNA repair complex [Term] @@ -19404,11 +19404,11 @@ [Term] id: GO:0019812 ! Type I site-specific deoxyribonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905347 {is_inferred="true"} ! endodeoxyribonuclease complex [Term] id: GO:0019813 ! Type III site-specific deoxyribonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905347 {is_inferred="true"} ! endodeoxyribonuclease complex [Term] id: GO:0019815 ! B cell receptor complex @@ -23181,7 +23181,7 @@ [Term] id: GO:0032068 ! Type IV site-specific deoxyribonuclease complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex +is_a: GO:1905347 {is_inferred="true"} ! endodeoxyribonuclease complex [Term] id: GO:0032069 ! regulation of nuclease activity @@ -78078,8 +78078,8 @@ [Term] id: GO:1903095 ! ribonuclease III complex -is_a: GO:1902494 {is_inferred="true"} ! catalytic complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex +is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:1903096 ! protein localization to meiotic spindle midzone @@ -89059,6 +89059,14 @@ is_a: GO:1905345 {is_inferred="true"} ! protein localization to cleavage furrow [Term] +id: GO:1905347 ! endodeoxyribonuclease complex +is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex + +[Term] +id: GO:1905348 ! endonuclease complex +is_a: GO:1902494 {is_inferred="true"} ! catalytic complex + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -89418,6 +89426,7 @@ is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex is_a: GO:1902555 {is_inferred="true"} ! endoribonuclease complex +is_a: GO:1905348 {is_inferred="true"} ! endonuclease complex [Term] id: GO:1990333 ! mitotic checkpoint complex, CDC20-MAD2 subcomplex ------------------------------------------------------------------------ r34705 | paola | 2016-08-02 07:03:38 -0700 (Tue, 02 Aug 2016) | 2 lines GH GO:1902560 'GMP reductase complex' needs editing #11544 - closed - see ticket for details changes in entailments ------------------------------------------------------------------------ r34703 | dph | 2016-08-02 06:40:50 -0700 (Tue, 02 Aug 2016) | 2 lines GH12564-closed changes in entailments ------------------------------------------------------------------------ r34689 | termgenie | 2016-08-01 08:24:22 -0700 (Mon, 01 Aug 2016) | 3 lines TermGenie commit for user: mah reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34689) +++ go_inferences.obo (working copy) @@ -89050,6 +89050,15 @@ is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process [Term] +id: GO:1905345 ! protein localization to cleavage furrow +is_a: GO:0034394 {is_inferred="true"} ! protein localization to cell surface +is_a: GO:0072741 {is_inferred="true"} ! protein localization to cell division site + +[Term] +id: GO:1905346 ! protein localization to cleavage furrow rim +is_a: GO:1905345 {is_inferred="true"} ! protein localization to cleavage furrow + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34679 | termgenie | 2016-07-31 17:44:20 -0700 (Sun, 31 Jul 2016) | 2 lines TermGenie commit for user: al reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34679) +++ go_inferences.obo (working copy) @@ -88999,6 +88999,10 @@ is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process [Term] +id: GO:1905334 ! Swi5-Sfr1 complex binding +is_a: GO:0032403 {is_inferred="true"} ! protein complex binding + +[Term] id: GO:1905335 ! regulation of aggrephagy is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy ------------------------------------------------------------------------ r34677 | termgenie | 2016-07-31 17:29:00 -0700 (Sun, 31 Jul 2016) | 2 lines TermGenie commit for user: rl reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34677) +++ go_inferences.obo (working copy) @@ -89016,11 +89016,12 @@ id: GO:1905338 ! negative regulation of cohesin unloading is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process +is_a: GO:1905343 {is_inferred="true"} ! regulation of cohesin unloading [Term] id: GO:1905339 ! positive regulation of cohesin unloading -is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process +is_a: GO:1905343 {is_inferred="true"} ! regulation of cohesin unloading [Term] id: GO:1905340 ! regulation of protein localization to kinetochore @@ -89037,6 +89038,14 @@ is_a: GO:1905340 {is_inferred="true"} ! regulation of protein localization to kinetochore [Term] +id: GO:1905343 ! regulation of cohesin unloading +is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion + +[Term] +id: GO:1905344 ! prostaglandin catabolic process +is_a: GO:1901523 {is_inferred="true"} ! icosanoid catabolic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34674 | davidos | 2016-07-31 17:21:02 -0700 (Sun, 31 Jul 2016) | 1 line Fixed AP error (xref used in place of namespace) changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34674) +++ go_inferences.obo (working copy) @@ -967,10 +967,6 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] -id: GO:0000915 ! actomyosin contractile ring assembly -is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination - -[Term] id: GO:0000917 ! barrier septum assembly is_a: GO:0090529 {is_inferred="true"} ! cell septum assembly @@ -8064,7 +8060,7 @@ [Term] id: GO:0006911 ! phagocytosis, engulfment -is_a: GO:0010324 {is_inferred="true"} ! membrane invagination +is_a: GO:0099024 {is_inferred="true"} ! plasma membrane invagination [Term] id: GO:0006921 ! cellular component disassembly involved in execution phase of apoptosis @@ -8328,10 +8324,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0007107 ! membrane addition at site of cytokinesis -is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination - -[Term] id: GO:0007116 ! regulation of cell budding is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division is_a: GO:1903664 {is_inferred="true"} ! regulation of asexual reproduction @@ -22589,10 +22581,6 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] -id: GO:0031566 ! actomyosin contractile ring maintenance -is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination - -[Term] id: GO:0031569 ! G2 cell size control checkpoint is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint @@ -25774,7 +25762,6 @@ [Term] id: GO:0032954 ! regulation of cytokinetic process is_a: GO:0032465 {is_inferred="true"} ! regulation of cytokinesis -is_a: GO:1905153 {is_inferred="true"} ! regulation of membrane invagination [Term] id: GO:0032955 ! regulation of barrier septum assembly @@ -61730,10 +61717,22 @@ is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering [Term] +id: GO:0099043 ! cargo loading involved in clathrin-dependent endocytosis +is_a: GO:0035652 {is_inferred="true"} ! cargo loading into clathrin-coated vesicle + +[Term] id: GO:0099044 ! vesicle tethering to endoplasmic reticulum is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering [Term] +id: GO:0099049 ! clathrin coat assembly involved in endocytosis +is_a: GO:0048268 {is_inferred="true"} ! clathrin coat assembly + +[Term] +id: GO:0099052 ! vesicle scission involved in clathrin-mediated endocytosis +is_a: GO:0099051 {is_inferred="true"} ! vesicle scission involved in endocytosis + +[Term] id: GO:0099055 ! integral component of postsynaptic membrane is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane @@ -63416,9 +63415,9 @@ is_a: GO:1900183 {is_inferred="true"} ! regulation of xanthone-containing compound biosynthetic process [Term] -id: GO:1900186 ! negative regulation of clathrin-mediated endocytosis +id: GO:1900186 ! negative regulation of clathrin-dependent endocytosis is_a: GO:0048261 {is_inferred="true"} ! negative regulation of receptor-mediated endocytosis -is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-mediated endocytosis +is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-dependent endocytosis [Term] id: GO:1900187 ! regulation of cell adhesion involved in single-species biofilm formation @@ -63686,11 +63685,11 @@ [Term] id: GO:1900242 ! regulation of synaptic vesicle endocytosis is_a: GO:1903421 {is_inferred="true"} ! regulation of synaptic vesicle recycling -is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-mediated endocytosis +is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-dependent endocytosis [Term] id: GO:1900243 ! negative regulation of synaptic vesicle endocytosis -is_a: GO:1900186 {is_inferred="true"} ! negative regulation of clathrin-mediated endocytosis +is_a: GO:1900186 {is_inferred="true"} ! negative regulation of clathrin-dependent endocytosis is_a: GO:1900242 {is_inferred="true"} ! regulation of synaptic vesicle endocytosis is_a: GO:1903422 {is_inferred="true"} ! negative regulation of synaptic vesicle recycling @@ -63698,7 +63697,7 @@ id: GO:1900244 ! positive regulation of synaptic vesicle endocytosis is_a: GO:1900242 {is_inferred="true"} ! regulation of synaptic vesicle endocytosis is_a: GO:1903423 {is_inferred="true"} ! positive regulation of synaptic vesicle recycling -is_a: GO:2000370 {is_inferred="true"} ! positive regulation of clathrin-mediated endocytosis +is_a: GO:2000370 {is_inferred="true"} ! positive regulation of clathrin-dependent endocytosis [Term] id: GO:1900245 ! positive regulation of MDA-5 signaling pathway @@ -70989,13 +70988,11 @@ id: GO:1901649 ! negative regulation of actomyosin contractile ring localization is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis is_a: GO:1901648 {is_inferred="true"} ! regulation of actomyosin contractile ring localization -is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1901650 ! positive regulation of actomyosin contractile ring localization is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:1901648 {is_inferred="true"} ! regulation of actomyosin contractile ring localization -is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1901651 ! regulation of mitotic chromosome decondensation @@ -72259,19 +72256,20 @@ id: GO:1901891 ! regulation of cell septum assembly is_a: GO:0032954 {is_inferred="true"} ! regulation of cytokinetic process is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1901892 ! negative regulation of cell septum assembly is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901891 {is_inferred="true"} ! regulation of cell septum assembly -is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1901893 ! positive regulation of cell septum assembly is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1901891 {is_inferred="true"} ! regulation of cell septum assembly -is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1901894 ! regulation of calcium-transporting ATPase activity @@ -75796,7 +75794,6 @@ id: GO:1902621 ! actomyosin contractile ring disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly is_a: GO:0044837 {is_inferred="true"} ! actomyosin contractile ring organization -is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination [Term] id: GO:1902622 ! regulation of neutrophil migration @@ -79692,13 +79689,11 @@ id: GO:1903437 ! negative regulation of mitotic cytokinetic process is_a: GO:1902413 {is_inferred="true"} ! negative regulation of mitotic cytokinesis is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process -is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1903438 ! positive regulation of mitotic cytokinetic process is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process is_a: GO:1903490 {is_inferred="true"} ! positive regulation of mitotic cytokinesis -is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1903441 ! protein localization to ciliary membrane @@ -79908,10 +79903,12 @@ [Term] id: GO:1903483 ! regulation of maintenance of mitotic actomyosin contractile ring localization +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1902471 {is_inferred="true"} ! regulation of mitotic actomyosin contractile ring localization [Term] id: GO:1903484 ! negative regulation of maintenance of mitotic actomyosin contractile ring localization +is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901649 {is_inferred="true"} ! negative regulation of actomyosin contractile ring localization is_a: GO:1903437 {is_inferred="true"} ! negative regulation of mitotic cytokinetic process is_a: GO:1903483 {is_inferred="true"} ! regulation of maintenance of mitotic actomyosin contractile ring localization @@ -79918,6 +79915,7 @@ [Term] id: GO:1903485 ! positive regulation of maintenance of mitotic actomyosin contractile ring localization +is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1901650 {is_inferred="true"} ! positive regulation of actomyosin contractile ring localization is_a: GO:1903438 {is_inferred="true"} ! positive regulation of mitotic cytokinetic process is_a: GO:1903483 {is_inferred="true"} ! regulation of maintenance of mitotic actomyosin contractile ring localization @@ -86315,6 +86313,7 @@ [Term] id: GO:1904789 ! regulation of mitotic actomyosin contractile ring maintenance +is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process [Term] @@ -89837,7 +89836,7 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] -id: GO:1990771 ! clathrin-mediated extracellular exosome endocytosis +id: GO:1990771 ! clathrin-dependent extracellular exosome endocytosis is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization [Term] @@ -90394,12 +90393,10 @@ [Term] id: GO:2000075 ! negative regulation of cytokinesis, site selection -is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination is_a: GO:2000073 {is_inferred="true"} ! regulation of cytokinesis, site selection [Term] id: GO:2000076 ! positive regulation cytokinesis, site selection -is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination is_a: GO:2000073 {is_inferred="true"} ! regulation of cytokinesis, site selection [Term] @@ -91935,13 +91932,13 @@ is_a: GO:2000367 {is_inferred="true"} ! regulation of acrosomal vesicle exocytosis [Term] -id: GO:2000369 ! regulation of clathrin-mediated endocytosis +id: GO:2000369 ! regulation of clathrin-dependent endocytosis is_a: GO:0048259 {is_inferred="true"} ! regulation of receptor-mediated endocytosis [Term] -id: GO:2000370 ! positive regulation of clathrin-mediated endocytosis +id: GO:2000370 ! positive regulation of clathrin-dependent endocytosis is_a: GO:0048260 {is_inferred="true"} ! positive regulation of receptor-mediated endocytosis -is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-mediated endocytosis +is_a: GO:2000369 {is_inferred="true"} ! regulation of clathrin-dependent endocytosis [Term] id: GO:2000371 ! regulation of DNA topoisomerase (ATP-hydrolyzing) activity @@ -92258,7 +92255,6 @@ id: GO:2000432 ! negative regulation of cytokinesis, actomyosin contractile ring assembly is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization -is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination is_a: GO:2000431 {is_inferred="true"} ! regulation of cytokinesis, actomyosin contractile ring assembly [Term] @@ -92266,7 +92262,6 @@ is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization -is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination is_a: GO:2000431 {is_inferred="true"} ! regulation of cytokinesis, actomyosin contractile ring assembly [Term] @@ -96545,16 +96540,16 @@ [Term] id: GO:2001286 ! regulation of caveolin-mediated endocytosis -is_a: GO:0048259 {is_inferred="true"} ! regulation of receptor-mediated endocytosis +is_a: GO:0030100 {is_inferred="true"} ! regulation of endocytosis [Term] id: GO:2001287 ! negative regulation of caveolin-mediated endocytosis -is_a: GO:0048261 {is_inferred="true"} ! negative regulation of receptor-mediated endocytosis +is_a: GO:0045806 {is_inferred="true"} ! negative regulation of endocytosis is_a: GO:2001286 {is_inferred="true"} ! regulation of caveolin-mediated endocytosis [Term] id: GO:2001288 ! positive regulation of caveolin-mediated endocytosis -is_a: GO:0048260 {is_inferred="true"} ! positive regulation of receptor-mediated endocytosis +is_a: GO:0045807 {is_inferred="true"} ! positive regulation of endocytosis is_a: GO:2001286 {is_inferred="true"} ! regulation of caveolin-mediated endocytosis [Term] ------------------------------------------------------------------------ r34625 | termgenie | 2016-07-28 11:21:03 -0700 (Thu, 28 Jul 2016) | 4 lines TermGenie commit for user: es reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34625) +++ go_inferences.obo (working copy) @@ -89000,6 +89000,44 @@ is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process [Term] +id: GO:1905335 ! regulation of aggrephagy +is_a: GO:0016241 {is_inferred="true"} ! regulation of macroautophagy + +[Term] +id: GO:1905336 ! negative regulation of aggrephagy +is_a: GO:0016242 {is_inferred="true"} ! negative regulation of macroautophagy +is_a: GO:1905335 {is_inferred="true"} ! regulation of aggrephagy + +[Term] +id: GO:1905337 ! positive regulation of aggrephagy +is_a: GO:0016239 {is_inferred="true"} ! positive regulation of macroautophagy +is_a: GO:1905335 {is_inferred="true"} ! regulation of aggrephagy + +[Term] +id: GO:1905338 ! negative regulation of cohesin unloading +is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion +is_a: GO:0048519 {is_inferred="true"} ! negative regulation of biological process + +[Term] +id: GO:1905339 ! positive regulation of cohesin unloading +is_a: GO:0007063 {is_inferred="true"} ! regulation of sister chromatid cohesion +is_a: GO:0048518 {is_inferred="true"} ! positive regulation of biological process + +[Term] +id: GO:1905340 ! regulation of protein localization to kinetochore +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization + +[Term] +id: GO:1905341 ! negative regulation of protein localization to kinetochore +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization +is_a: GO:1905340 {is_inferred="true"} ! regulation of protein localization to kinetochore + +[Term] +id: GO:1905342 ! positive regulation of protein localization to kinetochore +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization +is_a: GO:1905340 {is_inferred="true"} ! regulation of protein localization to kinetochore + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -89978,6 +90016,16 @@ is_a: GO:0098637 {is_inferred="true"} ! protein complex involved in cell-matrix adhesion [Term] +id: GO:1990975 ! establishment of protein localization to mitotic spindle pole body +is_a: GO:0071989 {is_inferred="true"} ! establishment of protein localization to spindle pole body +is_a: GO:1902440 {is_inferred="true"} ! protein localization to mitotic spindle pole body + +[Term] +id: GO:1990976 ! protein transport along microtubule to mitotic spindle pole body +is_a: GO:1990852 {is_inferred="true"} ! protein transport along microtubule to spindle pole body +is_a: GO:1990975 {is_inferred="true"} ! establishment of protein localization to mitotic spindle pole body + +[Term] id: GO:2000001 ! regulation of DNA damage checkpoint is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus ------------------------------------------------------------------------ r34609 | davidos | 2016-07-27 14:35:08 -0700 (Wed, 27 Jul 2016) | 1 line Corrected AP error (comment -> dbxref) changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34609) +++ go_inferences.obo (working copy) @@ -306,6 +306,10 @@ is_a: GO:0005940 {is_inferred="true"} ! septin ring [Term] +id: GO:0000145 ! exocyst +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0000147 ! actin cortical patch assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly is_a: GO:0044396 {is_inferred="true"} ! actin cortical patch organization @@ -963,6 +967,10 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] +id: GO:0000915 ! actomyosin contractile ring assembly +is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination + +[Term] id: GO:0000917 ! barrier septum assembly is_a: GO:0090529 {is_inferred="true"} ! cell septum assembly @@ -994,6 +1002,11 @@ is_a: GO:0008275 {is_inferred="true"} ! gamma-tubulin small complex [Term] +id: GO:0000938 ! GARP complex +is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0000941 ! condensed nuclear chromosome inner kinetochore is_a: GO:0000939 {is_inferred="true"} ! condensed chromosome inner kinetochore is_a: GO:0044454 {is_inferred="true"} ! nuclear chromosome part @@ -8113,6 +8126,10 @@ is_a: GO:0006996 {is_inferred="true"} ! organelle organization [Term] +id: GO:0006999 ! nuclear pore organization +is_a: GO:0071822 {is_inferred="true"} ! protein complex subunit organization + +[Term] id: GO:0007005 ! mitochondrion organization is_a: GO:0006996 {is_inferred="true"} ! organelle organization @@ -8311,6 +8328,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] +id: GO:0007107 ! membrane addition at site of cytokinesis +is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination + +[Term] id: GO:0007116 ! regulation of cell budding is_a: GO:0051302 {is_inferred="true"} ! regulation of cell division is_a: GO:1903664 {is_inferred="true"} ! regulation of asexual reproduction @@ -17008,6 +17029,10 @@ is_a: GO:1904949 {is_inferred="true"} ! ATPase complex [Term] +id: GO:0017119 ! Golgi transport complex +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0017122 ! protein N-acetylglucosaminyltransferase complex is_a: GO:1990234 {is_inferred="true"} ! transferase complex @@ -19988,6 +20013,10 @@ is_a: GO:0055067 {is_inferred="true"} ! monovalent inorganic cation homeostasis [Term] +id: GO:0030008 ! TRAPP complex +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0030015 ! CCR4-NOT core complex is_a: GO:0044424 {is_inferred="true"} ! intracellular part @@ -21316,6 +21345,7 @@ [Term] id: GO:0030897 ! HOPS complex is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex +is_a: GO:0099023 {is_inferred="true"} ! tethring complex [Term] id: GO:0030904 ! retromer complex @@ -22559,6 +22589,10 @@ is_a: GO:0044463 {is_inferred="true"} ! cell projection part [Term] +id: GO:0031566 ! actomyosin contractile ring maintenance +is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination + +[Term] id: GO:0031569 ! G2 cell size control checkpoint is_a: GO:0031567 {is_inferred="true"} ! mitotic cell size control checkpoint @@ -25740,6 +25774,7 @@ [Term] id: GO:0032954 ! regulation of cytokinetic process is_a: GO:0032465 {is_inferred="true"} ! regulation of cytokinesis +is_a: GO:1905153 {is_inferred="true"} ! regulation of membrane invagination [Term] id: GO:0032955 ! regulation of barrier septum assembly @@ -26585,6 +26620,10 @@ is_a: GO:0090329 {is_inferred="true"} ! regulation of DNA-dependent DNA replication [Term] +id: GO:0033263 ! CORVET complex +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0033265 ! choline binding is_a: GO:0070405 {is_inferred="true"} ! ammonium ion binding @@ -28071,6 +28110,11 @@ is_a: GO:1901700 {is_inferred="true"} ! response to oxygen-containing compound [Term] +id: GO:0034203 ! glycolipid translocation +is_a: GO:0034204 {is_inferred="true"} ! lipid translocation +is_a: GO:0046836 {is_inferred="true"} ! glycolipid transport + +[Term] id: GO:0034213 ! quinolinate catabolic process is_a: GO:0043649 {is_inferred="true"} ! dicarboxylic acid catabolic process is_a: GO:0046874 {is_inferred="true"} ! quinolinate metabolic process @@ -36420,6 +36464,11 @@ is_a: GO:0009437 {is_inferred="true"} ! carnitine metabolic process [Term] +id: GO:0045332 ! phospholipid translocation +is_a: GO:0015914 {is_inferred="true"} ! phospholipid transport +is_a: GO:0034204 {is_inferred="true"} ! lipid translocation + +[Term] id: GO:0045337 ! farnesyl diphosphate biosynthetic process is_a: GO:0008654 {is_inferred="true"} ! phospholipid biosynthetic process is_a: GO:0016114 {is_inferred="true"} ! terpenoid biosynthetic process @@ -41333,6 +41382,11 @@ is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process [Term] +id: GO:0046623 ! sphingolipid-translocating ATPase activity +is_a: GO:0004012 {is_inferred="true"} ! phospholipid-translocating ATPase activity +is_a: GO:0046624 {is_inferred="true"} ! sphingolipid transporter activity + +[Term] id: GO:0046624 ! sphingolipid transporter activity is_a: GO:0005319 {is_inferred="true"} ! lipid transporter activity @@ -53027,6 +53081,10 @@ is_a: GO:0070926 {is_inferred="true"} ! regulation of ATP:ADP antiporter activity [Term] +id: GO:0070939 ! Dsl1/NZR complex +is_a: GO:0099023 {is_inferred="true"} ! tethring complex + +[Term] id: GO:0070948 ! regulation of neutrophil mediated cytotoxicity is_a: GO:0001910 {is_inferred="true"} ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002886 {is_inferred="true"} ! regulation of myeloid leukocyte mediated immunity @@ -59481,6 +59539,10 @@ is_a: GO:0010631 {is_inferred="true"} ! epithelial cell migration [Term] +id: GO:0090522 ! vesicle tethering involved in exocytosis +is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering + +[Term] id: GO:0090525 ! regulation of glycolysis involved in cellular glucose homeostasis is_a: GO:0006110 {is_inferred="true"} ! regulation of glycolytic process @@ -59502,9 +59564,20 @@ [Term] id: GO:0090554 ! phosphatidylcholine-translocating ATPase activity +is_a: GO:0004012 {is_inferred="true"} ! phospholipid-translocating ATPase activity is_a: GO:0008525 {is_inferred="true"} ! phosphatidylcholine transporter activity [Term] +id: GO:0090555 ! phosphatidylethanolamine-translocating ATPase activity +is_a: GO:0004012 {is_inferred="true"} ! phospholipid-translocating ATPase activity +is_a: GO:1904121 {is_inferred="true"} ! phosphatidylethanolamine transporter activity + +[Term] +id: GO:0090556 ! phosphatidylserine-translocating ATPase activity +is_a: GO:0004012 {is_inferred="true"} ! phospholipid-translocating ATPase activity +is_a: GO:0015247 {is_inferred="true"} ! aminophospholipid transporter activity + +[Term] id: GO:0090596 ! sensory organ morphogenesis is_a: GO:0009887 {is_inferred="true"} ! organ morphogenesis @@ -61469,7 +61542,7 @@ is_a: GO:0098982 {is_inferred="true"} ! GABA-ergic synapse [Term] -id: GO:0098985 ! asymmetric, glutamateric, excitatory synapse +id: GO:0098985 ! asymmetric, glutamatergic, excitatory synapse is_a: GO:0060076 {is_inferred="true"} ! excitatory synapse is_a: GO:0098978 {is_inferred="true"} ! glutamatergic synapse @@ -61569,6 +61642,10 @@ is_a: GO:0044448 {is_inferred="true"} ! cell cortex part [Term] +id: GO:0099023 ! tethring complex +is_a: GO:0043234 {is_inferred="true"} ! protein complex + +[Term] id: GO:0099025 ! anchored component of postsynaptic membrane is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane @@ -61634,6 +61711,29 @@ is_a: GO:0098955 {is_inferred="true"} ! intrinsic component of presynaptic endosome membrane [Term] +id: GO:0099038 ! ceramide-translocating ATPase activity +is_a: GO:0035620 {is_inferred="true"} ! ceramide transporter activity +is_a: GO:0046623 {is_inferred="true"} ! sphingolipid-translocating ATPase activity + +[Term] +id: GO:0099039 ! sphingolipid translocation +is_a: GO:0034204 {is_inferred="true"} ! lipid translocation +is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport + +[Term] +id: GO:0099040 ! ceramide translocation +is_a: GO:0035627 {is_inferred="true"} ! ceramide transport +is_a: GO:0099039 {is_inferred="true"} ! sphingolipid translocation + +[Term] +id: GO:0099041 ! vesicle tethering to Golgi +is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering + +[Term] +id: GO:0099044 ! vesicle tethering to endoplasmic reticulum +is_a: GO:0099022 {is_inferred="true"} ! vesicle tethering + +[Term] id: GO:0099055 ! integral component of postsynaptic membrane is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane @@ -70889,11 +70989,13 @@ id: GO:1901649 ! negative regulation of actomyosin contractile ring localization is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis is_a: GO:1901648 {is_inferred="true"} ! regulation of actomyosin contractile ring localization +is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1901650 ! positive regulation of actomyosin contractile ring localization is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:1901648 {is_inferred="true"} ! regulation of actomyosin contractile ring localization +is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1901651 ! regulation of mitotic chromosome decondensation @@ -72157,20 +72259,19 @@ id: GO:1901891 ! regulation of cell septum assembly is_a: GO:0032954 {is_inferred="true"} ! regulation of cytokinetic process is_a: GO:0044087 {is_inferred="true"} ! regulation of cellular component biogenesis -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization [Term] id: GO:1901892 ! negative regulation of cell septum assembly is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901891 {is_inferred="true"} ! regulation of cell septum assembly +is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1901893 ! positive regulation of cell septum assembly is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1901891 {is_inferred="true"} ! regulation of cell septum assembly +is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1901894 ! regulation of calcium-transporting ATPase activity @@ -75695,6 +75796,7 @@ id: GO:1902621 ! actomyosin contractile ring disassembly is_a: GO:0022411 {is_inferred="true"} ! cellular component disassembly is_a: GO:0044837 {is_inferred="true"} ! actomyosin contractile ring organization +is_a: GO:1902534 {is_inferred="true"} ! single-organism membrane invagination [Term] id: GO:1902622 ! regulation of neutrophil migration @@ -79590,11 +79692,13 @@ id: GO:1903437 ! negative regulation of mitotic cytokinetic process is_a: GO:1902413 {is_inferred="true"} ! negative regulation of mitotic cytokinesis is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process +is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination [Term] id: GO:1903438 ! positive regulation of mitotic cytokinetic process is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process is_a: GO:1903490 {is_inferred="true"} ! positive regulation of mitotic cytokinesis +is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination [Term] id: GO:1903441 ! protein localization to ciliary membrane @@ -79804,12 +79908,10 @@ [Term] id: GO:1903483 ! regulation of maintenance of mitotic actomyosin contractile ring localization -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1902471 {is_inferred="true"} ! regulation of mitotic actomyosin contractile ring localization [Term] id: GO:1903484 ! negative regulation of maintenance of mitotic actomyosin contractile ring localization -is_a: GO:0051129 {is_inferred="true"} ! negative regulation of cellular component organization is_a: GO:1901649 {is_inferred="true"} ! negative regulation of actomyosin contractile ring localization is_a: GO:1903437 {is_inferred="true"} ! negative regulation of mitotic cytokinetic process is_a: GO:1903483 {is_inferred="true"} ! regulation of maintenance of mitotic actomyosin contractile ring localization @@ -79816,7 +79918,6 @@ [Term] id: GO:1903485 ! positive regulation of maintenance of mitotic actomyosin contractile ring localization -is_a: GO:0051130 {is_inferred="true"} ! positive regulation of cellular component organization is_a: GO:1901650 {is_inferred="true"} ! positive regulation of actomyosin contractile ring localization is_a: GO:1903438 {is_inferred="true"} ! positive regulation of mitotic cytokinetic process is_a: GO:1903483 {is_inferred="true"} ! regulation of maintenance of mitotic actomyosin contractile ring localization @@ -86214,7 +86315,6 @@ [Term] id: GO:1904789 ! regulation of mitotic actomyosin contractile ring maintenance -is_a: GO:0051128 {is_inferred="true"} ! regulation of cellular component organization is_a: GO:1903436 {is_inferred="true"} ! regulation of mitotic cytokinetic process [Term] @@ -90246,10 +90346,12 @@ [Term] id: GO:2000075 ! negative regulation of cytokinesis, site selection +is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination is_a: GO:2000073 {is_inferred="true"} ! regulation of cytokinesis, site selection [Term] id: GO:2000076 ! positive regulation cytokinesis, site selection +is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination is_a: GO:2000073 {is_inferred="true"} ! regulation of cytokinesis, site selection [Term] @@ -92108,6 +92210,7 @@ id: GO:2000432 ! negative regulation of cytokinesis, actomyosin contractile ring assembly is_a: GO:0032466 {is_inferred="true"} ! negative regulation of cytokinesis is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization +is_a: GO:1905154 {is_inferred="true"} ! negative regulation of membrane invagination is_a: GO:2000431 {is_inferred="true"} ! regulation of cytokinesis, actomyosin contractile ring assembly [Term] @@ -92115,6 +92218,7 @@ is_a: GO:0032467 {is_inferred="true"} ! positive regulation of cytokinesis is_a: GO:0044089 {is_inferred="true"} ! positive regulation of cellular component biogenesis is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:1905155 {is_inferred="true"} ! positive regulation of membrane invagination is_a: GO:2000431 {is_inferred="true"} ! regulation of cytokinesis, actomyosin contractile ring assembly [Term] ------------------------------------------------------------------------ r34598 | tberardi | 2016-07-26 16:06:17 -0700 (Tue, 26 Jul 2016) | 1 line GH12556 update def cleavage furrow - closed changes in entailments ------------------------------------------------------------------------ r34598 | tberardi | 2016-07-26 16:06:17 -0700 (Tue, 26 Jul 2016) | 1 line GH12556 update def cleavage furrow - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34598) +++ go_inferences.obo (working copy) @@ -59525,6 +59525,14 @@ is_a: GO:0098795 {is_inferred="true"} ! mRNA cleavage involved in gene silencing [Term] +id: GO:0090688 ! cleavage furrow rim +is_a: GO:0032155 {is_inferred="true"} ! cell division site part + +[Term] +id: GO:0090689 ! cleavage furrow leading edge +is_a: GO:0032155 {is_inferred="true"} ! cell division site part + +[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate ------------------------------------------------------------------------ r34592 | mcourtot | 2016-07-26 01:15:43 -0700 (Tue, 26 Jul 2016) | 1 line adding missing id: GO:0005515 to the metagenomics slim changes in entailments ------------------------------------------------------------------------ r34587 | tberardi | 2016-07-25 16:18:21 -0700 (Mon, 25 Jul 2016) | 1 line GH12545 part_of link for new term GO:1905324 - closed changes in entailments ------------------------------------------------------------------------ r34550 | termgenie | 2016-07-22 09:24:42 -0700 (Fri, 22 Jul 2016) | 2 lines TermGenie commit for user: als reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34550) +++ go_inferences.obo (working copy) @@ -4542,6 +4542,7 @@ is_a: GO:0010769 {is_inferred="true"} ! regulation of cell morphogenesis involved in differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation is_a: GO:0072215 {is_inferred="true"} ! regulation of metanephros development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -4550,6 +4551,7 @@ is_a: GO:0010771 {is_inferred="true"} ! negative regulation of cell morphogenesis involved in differentiation is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation is_a: GO:0072217 {is_inferred="true"} ! negative regulation of metanephros development +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:0003348 ! cardiac endothelial cell differentiation @@ -21237,16 +21239,19 @@ [Term] id: GO:0030860 ! regulation of polarized epithelial cell differentiation is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:0030861 ! negative regulation of polarized epithelial cell differentiation is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation is_a: GO:0030860 {is_inferred="true"} ! regulation of polarized epithelial cell differentiation +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:0030862 ! positive regulation of polarized epithelial cell differentiation is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation is_a: GO:0030860 {is_inferred="true"} ! regulation of polarized epithelial cell differentiation +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0030864 ! cortical actin cytoskeleton @@ -48728,6 +48733,7 @@ [Term] id: GO:0060514 ! prostate induction is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0060515 ! prostate field specification @@ -49079,6 +49085,7 @@ id: GO:0060651 ! regulation of epithelial cell proliferation involved in mammary gland bud elongation is_a: GO:0033599 {is_inferred="true"} ! regulation of mammary gland epithelial cell proliferation is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:0060652 ! mammary gland cord morphogenesis @@ -49168,6 +49175,7 @@ is_a: GO:0003156 {is_inferred="true"} ! regulation of organ formation is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process [Term] @@ -49174,11 +49182,13 @@ id: GO:0060686 ! negative regulation of prostatic bud formation is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:0060685 {is_inferred="true"} ! regulation of prostatic bud formation +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium is_a: GO:2000242 {is_inferred="true"} ! negative regulation of reproductive process [Term] id: GO:0060687 ! regulation of branching involved in prostate gland morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis is_a: GO:2000241 {is_inferred="true"} ! regulation of reproductive process @@ -49208,6 +49218,7 @@ [Term] id: GO:0060693 ! regulation of branching involved in salivary gland morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:0060694 ! regulation of cholesterol transporter activity @@ -49459,6 +49470,7 @@ [Term] id: GO:0060762 ! regulation of branching involved in mammary gland duct morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:0060764 ! cell-cell signaling involved in mammary gland development @@ -49533,6 +49545,7 @@ [Term] id: GO:0060787 ! positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0060795 ! cell fate commitment involved in formation of primary germ layer @@ -49999,19 +50012,20 @@ [Term] id: GO:0061046 ! regulation of branching involved in lung morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] id: GO:0061047 ! positive regulation of branching involved in lung morphogenesis -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0061046 {is_inferred="true"} ! regulation of branching involved in lung morphogenesis +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0061048 ! negative regulation of branching involved in lung morphogenesis -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:0061046 {is_inferred="true"} ! regulation of branching involved in lung morphogenesis +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:0061050 ! regulation of cell growth involved in cardiac muscle cell development @@ -55341,6 +55355,10 @@ is_a: GO:0035295 {is_inferred="true"} ! tube development [Term] +id: GO:0072034 ! renal vesicle induction +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium + +[Term] id: GO:0072036 ! mesenchymal to epithelial transition involved in renal vesicle formation is_a: GO:0060231 {is_inferred="true"} ! mesenchymal to epithelial transition @@ -55381,6 +55399,7 @@ id: GO:0072043 ! regulation of pre-tubular aggregate formation by cell-cell signaling is_a: GO:0022407 {is_inferred="true"} ! regulation of cell-cell adhesion is_a: GO:0090183 {is_inferred="true"} ! regulation of kidney development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -55493,6 +55512,7 @@ is_a: GO:0010770 {is_inferred="true"} ! positive regulation of cell morphogenesis involved in differentiation is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation is_a: GO:0072216 {is_inferred="true"} ! positive regulation of metanephros development +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0072111 ! cell proliferation involved in kidney development @@ -57894,6 +57914,7 @@ [Term] id: GO:0090021 ! positive regulation of posterior neural plate formation by Wnt signaling pathway is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0090022 ! regulation of neutrophil chemotaxis @@ -58350,6 +58371,10 @@ is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] +id: GO:0090175 ! regulation of establishment of planar polarity +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium + +[Term] id: GO:0090176 ! microtubule cytoskeleton organization involved in establishment of planar polarity is_a: GO:0000226 {is_inferred="true"} ! microtubule cytoskeleton organization @@ -58412,16 +58437,19 @@ id: GO:0090189 ! regulation of branching involved in ureteric bud morphogenesis is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure is_a: GO:0061217 {is_inferred="true"} ! regulation of mesonephros development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:0090190 ! positive regulation of branching involved in ureteric bud morphogenesis is_a: GO:0061213 {is_inferred="true"} ! positive regulation of mesonephros development is_a: GO:0090189 {is_inferred="true"} ! regulation of branching involved in ureteric bud morphogenesis +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:0090191 ! negative regulation of branching involved in ureteric bud morphogenesis is_a: GO:0061218 {is_inferred="true"} ! negative regulation of mesonephros development is_a: GO:0090189 {is_inferred="true"} ! regulation of branching involved in ureteric bud morphogenesis +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:0090192 ! regulation of glomerulus development @@ -58691,6 +58719,7 @@ id: GO:0090256 ! regulation of cell proliferation involved in imaginal disc-derived wing morphogenesis is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation is_a: GO:0048580 {is_inferred="true"} ! regulation of post-embryonic development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -68681,6 +68710,7 @@ [Term] id: GO:1901207 ! regulation of heart looping is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis [Term] @@ -68687,11 +68717,13 @@ id: GO:1901208 ! negative regulation of heart looping is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:1901207 {is_inferred="true"} ! regulation of heart looping +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:1901209 ! positive regulation of heart looping is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development is_a: GO:1901207 {is_inferred="true"} ! regulation of heart looping +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:1901210 ! regulation of cardiac chamber formation @@ -68795,18 +68827,20 @@ [Term] id: GO:1901232 ! regulation of convergent extension involved in axis elongation -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0048638 {is_inferred="true"} ! regulation of developmental growth +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:1901233 ! negative regulation of convergent extension involved in axis elongation is_a: GO:0048640 {is_inferred="true"} ! negative regulation of developmental growth is_a: GO:1901232 {is_inferred="true"} ! regulation of convergent extension involved in axis elongation +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:1901234 ! positive regulation of convergent extension involved in axis elongation is_a: GO:0048639 {is_inferred="true"} ! positive regulation of developmental growth is_a: GO:1901232 {is_inferred="true"} ! regulation of convergent extension involved in axis elongation +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:1901235 ! (R)-carnitine transmembrane transporter activity @@ -70149,7 +70183,7 @@ [Term] id: GO:1901509 ! regulation of endothelial tube morphogenesis -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] @@ -80811,23 +80845,23 @@ [Term] id: GO:1903689 ! regulation of wound healing, spreading of epidermal cells -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration is_a: GO:0061041 {is_inferred="true"} ! regulation of wound healing +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:1903690 ! negative regulation of wound healing, spreading of epidermal cells is_a: GO:0030336 {is_inferred="true"} ! negative regulation of cell migration -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0061045 {is_inferred="true"} ! negative regulation of wound healing is_a: GO:1903689 {is_inferred="true"} ! regulation of wound healing, spreading of epidermal cells +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:1903691 ! positive regulation of wound healing, spreading of epidermal cells is_a: GO:0030335 {is_inferred="true"} ! positive regulation of cell migration -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0090303 {is_inferred="true"} ! positive regulation of wound healing is_a: GO:1903689 {is_inferred="true"} ! regulation of wound healing, spreading of epidermal cells +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:1903692 ! methionine import into cell @@ -82706,15 +82740,18 @@ [Term] id: GO:1904086 ! regulation of epiboly involved in gastrulation with mouth forming second is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:1904087 ! negative regulation of epiboly involved in gastrulation with mouth forming second is_a: GO:1904086 {is_inferred="true"} ! regulation of epiboly involved in gastrulation with mouth forming second +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation [Term] id: GO:1904088 ! positive regulation of epiboly involved in gastrulation with mouth forming second is_a: GO:1904086 {is_inferred="true"} ! regulation of epiboly involved in gastrulation with mouth forming second +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation [Term] @@ -82788,15 +82825,18 @@ [Term] id: GO:1904103 ! regulation of convergent extension involved in gastrulation is_a: GO:0010470 {is_inferred="true"} ! regulation of gastrulation +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium [Term] id: GO:1904104 ! negative regulation of convergent extension involved in gastrulation is_a: GO:1904103 {is_inferred="true"} ! regulation of convergent extension involved in gastrulation +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium is_a: GO:2000542 {is_inferred="true"} ! negative regulation of gastrulation [Term] id: GO:1904105 ! positive regulation of convergent extension involved in gastrulation is_a: GO:1904103 {is_inferred="true"} ! regulation of convergent extension involved in gastrulation +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium is_a: GO:2000543 {is_inferred="true"} ! positive regulation of gastrulation [Term] @@ -82862,6 +82902,7 @@ [Term] id: GO:1904118 ! regulation of otic vesicle morphogenesis is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -82868,11 +82909,13 @@ id: GO:1904119 ! negative regulation of otic vesicle morphogenesis is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:1904118 {is_inferred="true"} ! regulation of otic vesicle morphogenesis +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:1904120 ! positive regulation of otic vesicle morphogenesis is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development is_a: GO:1904118 {is_inferred="true"} ! regulation of otic vesicle morphogenesis +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:1904121 ! phosphatidylethanolamine transporter activity @@ -88537,20 +88580,20 @@ [Term] id: GO:1905276 ! regulation of epithelial tube formation -is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development [Term] id: GO:1905277 ! negative regulation of epithelial tube formation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium [Term] id: GO:1905278 ! positive regulation of epithelial tube formation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation +is_a: GO:1905332 {is_inferred="true"} ! positive regulation of morphogenesis of an epithelium [Term] id: GO:1905279 ! regulation of retrograde transport, endosome to Golgi @@ -88831,6 +88874,24 @@ is_a: GO:0015696 {is_inferred="true"} ! ammonium transport [Term] +id: GO:1905330 ! regulation of morphogenesis of an epithelium +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis + +[Term] +id: GO:1905331 ! negative regulation of morphogenesis of an epithelium +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium + +[Term] +id: GO:1905332 ! positive regulation of morphogenesis of an epithelium +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium + +[Term] +id: GO:1905333 ! regulation of gastric motility +is_a: GO:0044058 {is_inferred="true"} ! regulation of digestive system process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -90642,6 +90703,7 @@ [Term] id: GO:2000166 ! negative regulation of planar cell polarity pathway involved in pericardium morphogenesis is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development +is_a: GO:1905331 {is_inferred="true"} ! negative regulation of morphogenesis of an epithelium is_a: GO:2000160 {is_inferred="true"} ! negative regulation of planar cell polarity pathway involved in heart morphogenesis is_a: GO:2000165 {is_inferred="true"} ! regulation of planar cell polarity pathway involved in pericardium morphogenesis @@ -90937,6 +90999,7 @@ id: GO:2000223 ! regulation of BMP signaling pathway involved in heart jogging is_a: GO:0030510 {is_inferred="true"} ! regulation of BMP signaling pathway is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development +is_a: GO:1905330 {is_inferred="true"} ! regulation of morphogenesis of an epithelium is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis [Term] ------------------------------------------------------------------------ r34542 | termgenie | 2016-07-21 18:46:09 -0700 (Thu, 21 Jul 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34542) +++ go_inferences.obo (working copy) @@ -88826,6 +88826,11 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] +id: GO:1905329 ! sphingoid long-chain base transport +is_a: GO:0015695 {is_inferred="true"} ! organic cation transport +is_a: GO:0015696 {is_inferred="true"} ! ammonium transport + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34533 | termgenie | 2016-07-21 11:28:48 -0700 (Thu, 21 Jul 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34534) +++ go_inferences.obo (working copy) @@ -57403,11 +57403,20 @@ is_a: GO:0015211 {is_inferred="true"} ! purine nucleoside transmembrane transporter activity [Term] +id: GO:0080126 ! ovary septum development +is_a: GO:1905328 {is_inferred="true"} ! plant septum development + +[Term] id: GO:0080127 ! fruit septum development is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process +is_a: GO:1905328 {is_inferred="true"} ! plant septum development [Term] +id: GO:0080128 ! anther septum development +is_a: GO:1905328 {is_inferred="true"} ! plant septum development + +[Term] id: GO:0080134 ! regulation of response to stress is_a: GO:0048583 {is_inferred="true"} ! regulation of response to stimulus @@ -88813,6 +88822,10 @@ is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis [Term] +id: GO:1905328 ! plant septum development +is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34532 | termgenie | 2016-07-21 11:21:10 -0700 (Thu, 21 Jul 2016) | 2 lines TermGenie commit for user: tb reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34532) +++ go_inferences.obo (working copy) @@ -88809,6 +88809,10 @@ is_a: GO:1905325 {is_inferred="true"} ! regulation of meiosis I spindle assembly checkpoint [Term] +id: GO:1905327 ! tracheoesophageal septum formation +is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34530 | mcourtot | 2016-07-21 07:50:24 -0700 (Thu, 21 Jul 2016) | 1 line added new metagenomics slim terms changes in entailments ------------------------------------------------------------------------ r34528 | mcourtot | 2016-07-21 07:34:17 -0700 (Thu, 21 Jul 2016) | 1 line remove old metagenomics slim terms changes in entailments ------------------------------------------------------------------------ r34526 | davidos | 2016-07-21 06:15:42 -0700 (Thu, 21 Jul 2016) | 14 lines Fixes: #12547; #12510; #12508; #12429; #12505 (+related refactoring changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34526) +++ go_inferences.obo (working copy) @@ -4190,10 +4190,6 @@ is_a: GO:0098801 {is_inferred="true"} ! regulation of renal system process [Term] -id: GO:0003096 ! renal sodium ion transport -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] id: GO:0003097 ! renal water transport is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process @@ -5115,7 +5111,6 @@ [Term] id: GO:0005589 ! collagen type VI trimer is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0005591 ! collagen type VIII trimer @@ -5131,14 +5126,6 @@ is_a: GO:0030936 {is_inferred="true"} ! transmembrane collagen trimer [Term] -id: GO:0005604 ! basement membrane -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] -id: GO:0005605 ! basal lamina -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0005628 ! prospore membrane is_a: GO:0044464 {is_inferred="true"} ! cell part @@ -5320,6 +5307,11 @@ is_a: GO:1990234 {is_inferred="true"} ! transferase complex [Term] +id: GO:0005788 ! endoplasmic reticulum lumen +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen + +[Term] id: GO:0005789 ! endoplasmic reticulum membrane is_a: GO:0016020 {is_inferred="true"} ! membrane is_a: GO:0044425 {is_inferred="true"} ! membrane part @@ -5338,6 +5330,10 @@ is_a: GO:0005876 {is_inferred="true"} ! spindle microtubule [Term] +id: GO:0005829 ! cytosol +is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part + +[Term] id: GO:0005834 ! heterotrimeric G-protein complex is_a: GO:0044424 {is_inferred="true"} ! intracellular part is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -7853,6 +7849,10 @@ is_a: GO:1903409 {is_inferred="true"} ! reactive oxygen species biosynthetic process [Term] +id: GO:0006811 ! ion transport +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] id: GO:0006812 ! cation transport is_a: GO:0006811 {is_inferred="true"} ! ion transport @@ -8672,18 +8672,6 @@ is_a: GO:0019098 {is_inferred="true"} ! reproductive behavior [Term] -id: GO:0008002 ! lamina lucida -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] -id: GO:0008003 ! lamina densa -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] -id: GO:0008004 ! lamina reticularis -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0008016 ! regulation of heart contraction is_a: GO:1903522 {is_inferred="true"} ! regulation of blood circulation @@ -14268,6 +14256,14 @@ is_a: GO:0098827 {is_inferred="true"} ! endoplasmic reticulum subcompartment [Term] +id: GO:0014803 ! longitudinal sarcoplasmic reticulum lumen +is_a: GO:0033018 {is_inferred="true"} ! sarcoplasmic reticulum lumen + +[Term] +id: GO:0014804 ! terminal cisterna lumen +is_a: GO:0033018 {is_inferred="true"} ! sarcoplasmic reticulum lumen + +[Term] id: GO:0014806 ! smooth muscle hyperplasia is_a: GO:0014900 {is_inferred="true"} ! muscle hyperplasia @@ -15217,7 +15213,7 @@ [Term] id: GO:0015680 ! intracellular copper ion transport is_a: GO:0006825 {is_inferred="true"} ! copper ion transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport [Term] id: GO:0015682 ! ferric iron transport @@ -16444,7 +16440,7 @@ [Term] id: GO:0016079 ! synaptic vesicle exocytosis -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse is_a: GO:0099531 {is_inferred="true"} ! presynaptic process involved in chemical synaptic transmission is_a: GO:0099643 {is_inferred="true"} ! signal release from synapse @@ -16738,7 +16734,7 @@ id: GO:0016182 ! synaptic vesicle budding from endosome is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0070142 {is_inferred="true"} ! synaptic vesicle budding -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse [Term] id: GO:0016185 ! synaptic vesicle budding from presynaptic endocytic zone membrane @@ -21469,6 +21465,10 @@ is_a: GO:0044435 {is_inferred="true"} ! plastid part [Term] +id: GO:0031012 ! extracellular matrix +is_a: GO:0044421 {is_inferred="true"} ! extracellular region part + +[Term] id: GO:0031017 ! exocrine pancreas development is_a: GO:0048732 {is_inferred="true"} ! gland development @@ -23008,6 +23008,10 @@ is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] +id: GO:0031970 ! organelle envelope lumen +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen + +[Term] id: GO:0031976 ! plastid thylakoid is_a: GO:0009579 {is_inferred="true"} ! thylakoid is_a: GO:0044435 {is_inferred="true"} ! plastid part @@ -24523,10 +24527,6 @@ is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] -id: GO:0032579 ! apical lamina of hyaline layer -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0032580 ! Golgi cisterna membrane is_a: GO:0000139 {is_inferred="true"} ! Golgi membrane @@ -25827,7 +25827,7 @@ [Term] id: GO:0032975 ! amino acid transmembrane import into vacuole is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport -is_a: GO:0043090 {is_inferred="true"} ! amino acid import +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import [Term] id: GO:0032981 ! mitochondrial respiratory chain complex I assembly @@ -25935,6 +25935,10 @@ is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle [Term] +id: GO:0033018 ! sarcoplasmic reticulum lumen +is_a: GO:0005788 {is_inferred="true"} ! endoplasmic reticulum lumen + +[Term] id: GO:0033020 ! cyclopentanol metabolic process is_a: GO:0006066 {is_inferred="true"} ! alcohol metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -28540,10 +28544,14 @@ [Term] id: GO:0034488 ! basic amino acid transmembrane export from vacuole +is_a: GO:0015802 {is_inferred="true"} ! basic amino acid transport +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] id: GO:0034489 ! neutral amino acid transmembrane export from vacuole +is_a: GO:0015804 {is_inferred="true"} ! neutral amino acid transport +is_a: GO:0032974 {is_inferred="true"} ! amino acid transmembrane export from vacuole is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] @@ -28812,19 +28820,16 @@ [Term] id: GO:0034762 ! regulation of transmembrane transport -is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:0051049 {is_inferred="true"} ! regulation of transport [Term] id: GO:0034763 ! negative regulation of transmembrane transport is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:0051051 {is_inferred="true"} ! negative regulation of transport [Term] id: GO:0034764 ! positive regulation of transmembrane transport is_a: GO:0034762 {is_inferred="true"} ! regulation of transmembrane transport -is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:0051050 {is_inferred="true"} ! positive regulation of transport [Term] @@ -30015,10 +30020,6 @@ is_a: GO:0015077 {is_inferred="true"} ! monovalent inorganic cation transmembrane transporter activity [Term] -id: GO:0035828 ! renal rubidium ion transport -is_a: GO:0044707 {is_inferred="true"} ! single-multicellular organism process - -[Term] id: GO:0035830 ! palmatine metabolic process is_a: GO:0033076 {is_inferred="true"} ! isoquinoline alkaloid metabolic process @@ -30781,7 +30782,7 @@ [Term] id: GO:0036465 ! synaptic vesicle recycling -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse [Term] id: GO:0036502 ! Derlin-1-VIMP complex @@ -33771,10 +33772,6 @@ is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] -id: GO:0043205 ! fibril -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0043208 ! glycosphingolipid binding is_a: GO:0046625 {is_inferred="true"} ! sphingolipid binding is_a: GO:0051861 {is_inferred="true"} ! glycolipid binding @@ -33807,6 +33804,11 @@ is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] +id: GO:0043233 ! organelle lumen +is_a: GO:0031974 {is_inferred="true"} ! membrane-enclosed lumen +is_a: GO:0044422 {is_inferred="true"} ! organelle part + +[Term] id: GO:0043241 ! protein complex disassembly is_a: GO:0032984 {is_inferred="true"} ! macromolecular complex disassembly @@ -33840,10 +33842,6 @@ is_a: GO:0009889 {is_inferred="true"} ! regulation of biosynthetic process [Term] -id: GO:0043256 ! laminin complex -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0043266 ! regulation of potassium ion transport is_a: GO:0010959 {is_inferred="true"} ! regulation of metal ion transport @@ -35383,7 +35381,7 @@ [Term] id: GO:0044420 ! extracellular matrix component -is_a: GO:0005575 {is_inferred="true"} ! cellular_component +is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0044421 ! extracellular region part @@ -35676,6 +35674,10 @@ is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex [Term] +id: GO:0044743 ! intracellular protein transmembrane import +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport + +[Term] id: GO:0044744 ! protein targeting to nucleus is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus is_a: GO:0051169 {is_inferred="true"} ! nuclear transport @@ -35682,6 +35684,11 @@ is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle [Term] +id: GO:0044745 ! amino acid transmembrane import +is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0043090 {is_inferred="true"} ! amino acid import + +[Term] id: GO:0044746 ! amino acid transmembrane export is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport is_a: GO:0032973 {is_inferred="true"} ! amino acid export @@ -35821,6 +35828,7 @@ [Term] id: GO:0044842 ! gut granule lumen is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen [Term] id: GO:0044853 ! plasma membrane raft @@ -42381,6 +42389,15 @@ is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development [Term] +id: GO:0048237 ! rough endoplasmic reticulum lumen +is_a: GO:0005788 {is_inferred="true"} ! endoplasmic reticulum lumen + +[Term] +id: GO:0048238 ! smooth endoplasmic reticulum lumen +is_a: GO:0005788 {is_inferred="true"} ! endoplasmic reticulum lumen +is_a: GO:0097425 {is_inferred="true"} ! smooth endoplasmic reticulum part + +[Term] id: GO:0048240 ! sperm capacitation is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism @@ -42798,7 +42815,7 @@ [Term] id: GO:0048488 ! synaptic vesicle endocytosis is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse [Term] id: GO:0048489 ! synaptic vesicle transport @@ -47490,6 +47507,10 @@ is_a: GO:0098771 {is_inferred="true"} ! inorganic ion homeostasis [Term] +id: GO:0055085 ! transmembrane transport +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] id: GO:0055086 ! nucleobase-containing small molecule metabolic process is_a: GO:0044763 {is_inferred="true"} ! single-organism cellular process @@ -47719,7 +47740,6 @@ [Term] id: GO:0060103 ! collagen and cuticulin-based cuticle extracellular matrix part is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0060114 ! vestibular receptor cell differentiation @@ -47884,6 +47904,10 @@ is_a: GO:0060194 {is_inferred="true"} ! regulation of antisense RNA transcription [Term] +id: GO:0060205 ! cytoplasmic membrane-bounded vesicle lumen +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen + +[Term] id: GO:0060211 ! regulation of nuclear-transcribed mRNA poly(A) tail shortening is_a: GO:1900151 {is_inferred="true"} ! regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay @@ -48443,6 +48467,7 @@ [Term] id: GO:0060402 ! calcium ion transport into cytosol +is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell [Term] @@ -50931,10 +50956,6 @@ is_a: GO:0098800 {is_inferred="true"} ! inner mitochondrial membrane protein complex [Term] -id: GO:0061618 ! sublamina densa -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0061619 ! glycolytic process from mannose through fructose-6-phosphate is_a: GO:0006002 {is_inferred="true"} ! fructose 6-phosphate metabolic process is_a: GO:0019309 {is_inferred="true"} ! mannose catabolic process @@ -51095,7 +51116,6 @@ id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0065003 ! macromolecular complex assembly @@ -51114,6 +51134,11 @@ is_a: GO:0065007 {is_inferred="true"} ! biological regulation [Term] +id: GO:0070013 ! intracellular organelle lumen +is_a: GO:0043233 {is_inferred="true"} ! organelle lumen +is_a: GO:0044424 {is_inferred="true"} ! intracellular part + +[Term] id: GO:0070014 ! sucrase-isomaltase complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex is_a: GO:1902687 {is_inferred="true"} ! glucosidase complex @@ -54283,6 +54308,7 @@ [Term] id: GO:0071423 ! malate transmembrane transport +is_a: GO:0015743 {is_inferred="true"} ! malate transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] @@ -54933,6 +54959,10 @@ is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly [Term] +id: GO:0071804 ! cellular potassium ion transport +is_a: GO:0044765 {is_inferred="true"} ! single-organism transport + +[Term] id: GO:0071805 ! potassium ion transmembrane transport is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport @@ -57781,7 +57811,7 @@ [Term] id: GO:0089718 ! amino acid import across plasma membrane -is_a: GO:0003333 {is_inferred="true"} ! amino acid transmembrane transport +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell @@ -59164,7 +59194,7 @@ [Term] id: GO:0090374 ! oligopeptide export from mitochondrion -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -59457,10 +59487,6 @@ is_a: GO:0098795 {is_inferred="true"} ! mRNA cleavage involved in gene silencing [Term] -id: GO:0090658 ! cone matrix sheath -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part - -[Term] id: GO:0093001 ! glycolysis from storage polysaccharide through glucose-1-phosphate is_a: GO:0000272 {is_inferred="true"} ! polysaccharide catabolic process is_a: GO:0061622 {is_inferred="true"} ! glycolytic process through glucose-1-phosphate @@ -60459,12 +60485,10 @@ [Term] id: GO:0098642 ! network-forming collagen trimer is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0098644 ! complex of collagen trimers is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0098649 ! response to peptidyl-dipeptidase A inhibitor @@ -60473,7 +60497,6 @@ [Term] id: GO:0098651 ! basement membrane collagen trimer is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component -is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] id: GO:0098655 ! cation transmembrane transport @@ -60486,6 +60509,10 @@ is_a: GO:0034220 {is_inferred="true"} ! ion transmembrane transport [Term] +id: GO:0098657 ! import into cell +is_a: GO:0006810 {is_inferred="true"} ! transport + +[Term] id: GO:0098658 ! inorganic anion import into cell is_a: GO:0099587 {is_inferred="true"} ! inorganic ion import into cell @@ -61000,13 +61027,13 @@ [Term] id: GO:0098884 ! postsynaptic neurotransmitter receptor internalization is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse [Term] id: GO:0098887 ! neurotransmitter receptor transport, endosome to postsynaptic membrane is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell is_a: GO:0098969 {is_inferred="true"} ! neurotransmitter receptor transport to postsynaptic membrane -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse is_a: GO:0099639 {is_inferred="true"} ! neurotransmitter receptor transport, endosome to plasma membrane [Term] @@ -61479,6 +61506,23 @@ is_a: GO:0061109 {is_inferred="true"} ! dense core granule organization [Term] +id: GO:0099017 ! maintenance of protein localization at cell tip +is_a: GO:0032507 {is_inferred="true"} ! maintenance of protein location in cell + +[Term] +id: GO:0099019 ! maintenance of protein localization at growing cell tip +is_a: GO:0099017 {is_inferred="true"} ! maintenance of protein localization at cell tip + +[Term] +id: GO:0099020 ! perinuclear endoplasmic reticulum lumen +is_a: GO:0005788 {is_inferred="true"} ! endoplasmic reticulum lumen + +[Term] +id: GO:0099021 ! cortical endoplasmic reticulum lumen +is_a: GO:0005788 {is_inferred="true"} ! endoplasmic reticulum lumen +is_a: GO:0044448 {is_inferred="true"} ! cell cortex part + +[Term] id: GO:0099025 ! anchored component of postsynaptic membrane is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane is_a: GO:0098936 {is_inferred="true"} ! intrinsic component of postsynaptic membrane @@ -61691,7 +61735,7 @@ [Term] id: GO:0099525 ! presynaptic dense core vesicle exocytosis is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell -is_a: GO:0099003 {is_inferred="true"} ! vesicle mediated transport in synapse +is_a: GO:0099003 {is_inferred="true"} ! vesicle-mediated transport in synapse is_a: GO:0099011 {is_inferred="true"} ! neuronal dense core vesicle exocytosis is_a: GO:0099643 {is_inferred="true"} ! signal release from synapse @@ -69462,11 +69506,13 @@ [Term] id: GO:1901379 ! regulation of potassium ion transmembrane transport is_a: GO:0043266 {is_inferred="true"} ! regulation of potassium ion transport +is_a: GO:0050794 {is_inferred="true"} ! regulation of cellular process is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport [Term] id: GO:1901380 ! negative regulation of potassium ion transmembrane transport is_a: GO:0043267 {is_inferred="true"} ! negative regulation of potassium ion transport +is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process is_a: GO:1901379 {is_inferred="true"} ! regulation of potassium ion transmembrane transport is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport @@ -69473,6 +69519,7 @@ [Term] id: GO:1901381 ! positive regulation of potassium ion transmembrane transport is_a: GO:0043268 {is_inferred="true"} ! positive regulation of potassium ion transport +is_a: GO:0048522 {is_inferred="true"} ! positive regulation of cellular process is_a: GO:1901379 {is_inferred="true"} ! regulation of potassium ion transmembrane transport is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport @@ -85803,8 +85850,8 @@ [Term] id: GO:1904724 ! tertiary granule lumen -is_a: GO:0031974 {is_inferred="true"} ! membrane-enclosed lumen is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen [Term] id: GO:1904725 ! TFIIB-class transcription factor binding involved in negative regulation of transcription @@ -86223,8 +86270,8 @@ [Term] id: GO:1904813 ! ficolin-1-rich granule lumen -is_a: GO:0031974 {is_inferred="true"} ! membrane-enclosed lumen is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part +is_a: GO:0070013 {is_inferred="true"} ! intracellular organelle lumen [Term] id: GO:1904814 ! regulation of protein localization to chromosome, telomeric region @@ -88788,9 +88835,9 @@ [Term] id: GO:1990036 ! calcium ion import into sarcoplasmic reticulum +is_a: GO:0046907 {is_inferred="true"} ! intracellular transport is_a: GO:0070296 {is_inferred="true"} ! sarcoplasmic reticulum calcium ion transport is_a: GO:0070509 {is_inferred="true"} ! calcium ion import -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:1990037 ! Lewy body core @@ -88898,6 +88945,7 @@ [Term] id: GO:1990122 ! leucine import into cell +is_a: GO:0060356 {is_inferred="true"} ! leucine import is_a: GO:1902837 {is_inferred="true"} ! amino acid import into cell [Term] @@ -89418,6 +89466,7 @@ [Term] id: GO:1990591 ! asparagine transmembrane import into vacuole is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport +is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import is_a: GO:0090469 {is_inferred="true"} ! asparagine import is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport ------------------------------------------------------------------------ r34519 | tberardi | 2016-07-20 16:51:09 -0700 (Wed, 20 Jul 2016) | 1 line GH12551 activation of meiosis I spindle assembly checkpoint - closed changes in entailments ------------------------------------------------------------------------ r34517 | tberardi | 2016-07-20 16:38:53 -0700 (Wed, 20 Jul 2016) | 1 line GH12497 glycine betaine-activated nonselective monovalent cation channel activity - closed changes in entailments ------------------------------------------------------------------------ r34515 | tberardi | 2016-07-20 16:25:42 -0700 (Wed, 20 Jul 2016) | 1 line GH12493 synonyms for R-SMADs - closed changes in entailments ------------------------------------------------------------------------ r34513 | termgenie | 2016-07-20 15:43:27 -0700 (Wed, 20 Jul 2016) | 3 lines TermGenie commit for user: mah reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34513) +++ go_inferences.obo (working copy) @@ -88750,6 +88750,18 @@ is_a: GO:0065004 {is_inferred="true"} ! protein-DNA complex assembly [Term] +id: GO:1905325 ! regulation of meiosis I spindle assembly checkpoint +is_a: GO:0060631 {is_inferred="true"} ! regulation of meiosis I +is_a: GO:0090231 {is_inferred="true"} ! regulation of spindle checkpoint +is_a: GO:1902102 {is_inferred="true"} ! regulation of metaphase/anaphase transition of meiotic cell cycle + +[Term] +id: GO:1905326 ! positive regulation of meiosis I spindle assembly checkpoint +is_a: GO:0060903 {is_inferred="true"} ! positive regulation of meiosis I +is_a: GO:0090232 {is_inferred="true"} ! positive regulation of spindle checkpoint +is_a: GO:1905325 {is_inferred="true"} ! regulation of meiosis I spindle assembly checkpoint + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34506 | tberardi | 2016-07-19 17:18:51 -0700 (Tue, 19 Jul 2016) | 1 line fixing GOD to GOC in some dbxrefs changes in entailments ------------------------------------------------------------------------ r34503 | tberardi | 2016-07-19 16:03:02 -0700 (Tue, 19 Jul 2016) | 1 line GH12544 NTR: Transcription factor inhibitor complex - closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34503) +++ go_inferences.obo (working copy) @@ -5191,6 +5191,10 @@ is_a: GO:0044451 {is_inferred="true"} ! nucleoplasm part [Term] +id: GO:0005677 ! chromatin silencing complex +is_a: GO:0090568 {is_inferred="true"} ! nuclear transcriptional repressor complex + +[Term] id: GO:0005701 ! polytene chromosome chromocenter is_a: GO:0010369 {is_inferred="true"} ! chromocenter @@ -30756,6 +30760,10 @@ is_a: GO:0031246 {is_inferred="true"} ! intrinsic component of periplasmic side of cell outer membrane [Term] +id: GO:0036411 ! H-NS-Cnu complex +is_a: GO:0090569 {is_inferred="true"} ! cytoplasmic transcriptional repressor complex + +[Term] id: GO:0036418 ! intrinsic component of mycolate outer membrane is_a: GO:0031230 {is_inferred="true"} ! intrinsic component of cell outer membrane @@ -89491,7 +89499,7 @@ [Term] id: GO:1990711 ! Beta-catenin-ICAT complex -is_a: GO:0044451 {is_inferred="true"} ! nucleoplasm part +is_a: GO:0090568 {is_inferred="true"} ! nuclear transcriptional repressor complex [Term] id: GO:1990712 ! HFE-transferrin receptor complex ------------------------------------------------------------------------ r34494 | termgenie | 2016-07-18 16:17:47 -0700 (Mon, 18 Jul 2016) | 3 lines TermGenie commit for user: mah reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34494) +++ go_inferences.obo (working copy) @@ -86492,7 +86492,7 @@ [Term] id: GO:1904868 ! telomerase catalytic core complex assembly -is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly +is_a: GO:1905323 {is_inferred="true"} ! telomerase holoenzyme complex assembly [Term] id: GO:1904869 ! regulation of protein localization to Cajal body @@ -88734,6 +88734,14 @@ is_a: GO:1905320 {is_inferred="true"} ! regulation of mesenchymal stem cell migration [Term] +id: GO:1905323 ! telomerase holoenzyme complex assembly +is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly + +[Term] +id: GO:1905324 ! telomere-telomerase complex assembly +is_a: GO:0065004 {is_inferred="true"} ! protein-DNA complex assembly + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34455 | termgenie | 2016-07-15 16:54:30 -0700 (Fri, 15 Jul 2016) | 4 lines TermGenie commit for user: sl reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34455) +++ go_inferences.obo (working copy) @@ -88720,6 +88720,20 @@ is_a: GO:0016477 {is_inferred="true"} ! cell migration [Term] +id: GO:1905320 ! regulation of mesenchymal stem cell migration +is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration + +[Term] +id: GO:1905321 ! negative regulation of mesenchymal stem cell migration +is_a: GO:0030336 {is_inferred="true"} ! negative regulation of cell migration +is_a: GO:1905320 {is_inferred="true"} ! regulation of mesenchymal stem cell migration + +[Term] +id: GO:1905322 ! positive regulation of mesenchymal stem cell migration +is_a: GO:0030335 {is_inferred="true"} ! positive regulation of cell migration +is_a: GO:1905320 {is_inferred="true"} ! regulation of mesenchymal stem cell migration + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34452 | termgenie | 2016-07-15 05:08:44 -0700 (Fri, 15 Jul 2016) | 4 lines See https://github.com/geneontology/go-ontology/issues/12533 changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34453) +++ go_inferences.obo (working copy) @@ -88716,6 +88716,10 @@ is_a: GO:0033316 {is_inferred="true"} ! meiotic spindle assembly checkpoint [Term] +id: GO:1905319 ! mesenchymal stem cell migration +is_a: GO:0016477 {is_inferred="true"} ! cell migration + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34442 | termgenie | 2016-07-14 02:35:16 -0700 (Thu, 14 Jul 2016) | 2 lines TermGenie commit for user: vw reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34442) +++ go_inferences.obo (working copy) @@ -88712,6 +88712,10 @@ is_a: GO:0003203 {is_inferred="true"} ! endocardial cushion morphogenesis [Term] +id: GO:1905318 ! meiosis I spindle assembly checkpoint +is_a: GO:0033316 {is_inferred="true"} ! meiotic spindle assembly checkpoint + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34440 | mcourtot | 2016-07-14 00:54:02 -0700 (Thu, 14 Jul 2016) | 1 line adding synonym GO:1990814. Closes #12538 changes in entailments ------------------------------------------------------------------------ r34436 | dph | 2016-07-13 10:18:37 -0700 (Wed, 13 Jul 2016) | 2 lines GH12529-closed changes in entailments ------------------------------------------------------------------------ r34434 | dph | 2016-07-13 09:59:20 -0700 (Wed, 13 Jul 2016) | 2 lines GH12530 and GH12528 changes in entailments ------------------------------------------------------------------------ r34432 | dph | 2016-07-13 09:35:36 -0700 (Wed, 13 Jul 2016) | 2 lines Tweaked the definition of cohesin loading. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34432) +++ go_inferences.obo (working copy) @@ -88705,11 +88705,11 @@ [Term] id: GO:1905316 ! superior endocardial cushion morphogenesis -is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis +is_a: GO:0003203 {is_inferred="true"} ! endocardial cushion morphogenesis [Term] id: GO:1905317 ! inferior endocardial cushion morphogenesis -is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis +is_a: GO:0003203 {is_inferred="true"} ! endocardial cushion morphogenesis [Term] id: GO:1990000 ! amyloid fibril formation ------------------------------------------------------------------------ r34424 | termgenie | 2016-07-13 01:02:07 -0700 (Wed, 13 Jul 2016) | 2 lines TermGenie commit for user: rl reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34424) +++ go_inferences.obo (working copy) @@ -88700,6 +88700,18 @@ is_a: GO:0003170 {is_inferred="true"} ! heart valve development [Term] +id: GO:1905315 ! cell proliferation involved in endocardial cushion morphogenesis +is_a: GO:0061323 {is_inferred="true"} ! cell proliferation involved in heart morphogenesis + +[Term] +id: GO:1905316 ! superior endocardial cushion morphogenesis +is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis + +[Term] +id: GO:1905317 ! inferior endocardial cushion morphogenesis +is_a: GO:0009653 {is_inferred="true"} ! anatomical structure morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34419 | termgenie | 2016-07-12 05:51:10 -0700 (Tue, 12 Jul 2016) | 2 lines TermGenie commit for user: rl reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34419) +++ go_inferences.obo (working copy) @@ -4435,7 +4435,7 @@ [Term] id: GO:0003302 ! transforming growth factor beta receptor signaling pathway involved in heart jogging is_a: GO:0035463 {is_inferred="true"} ! transforming growth factor beta receptor signaling pathway involved in determination of left/right asymmetry -is_a: GO:0061311 {is_inferred="true"} ! cell surface receptor signaling pathway involved in heart development +is_a: GO:1905313 {is_inferred="true"} ! transforming growth factor beta receptor signaling pathway involved in heart development [Term] id: GO:0003303 ! BMP signaling pathway involved in heart jogging @@ -88691,6 +88691,11 @@ is_a: GO:1905310 {is_inferred="true"} ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis [Term] +id: GO:1905313 ! transforming growth factor beta receptor signaling pathway involved in heart development +is_a: GO:0007179 {is_inferred="true"} ! transforming growth factor beta receptor signaling pathway +is_a: GO:0061311 {is_inferred="true"} ! cell surface receptor signaling pathway involved in heart development + +[Term] id: GO:1905314 ! semi-lunar valve development is_a: GO:0003170 {is_inferred="true"} ! heart valve development ------------------------------------------------------------------------ r34417 | termgenie | 2016-07-12 04:14:22 -0700 (Tue, 12 Jul 2016) | 2 lines TermGenie commit for user: rl reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34417) +++ go_inferences.obo (working copy) @@ -4294,6 +4294,14 @@ is_a: GO:0003171 {is_inferred="true"} ! atrioventricular valve development [Term] +id: GO:0003176 ! aortic valve development +is_a: GO:1905314 {is_inferred="true"} ! semi-lunar valve development + +[Term] +id: GO:0003177 ! pulmonary valve development +is_a: GO:1905314 {is_inferred="true"} ! semi-lunar valve development + +[Term] id: GO:0003183 ! mitral valve morphogenesis is_a: GO:0003181 {is_inferred="true"} ! atrioventricular valve morphogenesis @@ -88683,6 +88691,10 @@ is_a: GO:1905310 {is_inferred="true"} ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis [Term] +id: GO:1905314 ! semi-lunar valve development +is_a: GO:0003170 {is_inferred="true"} ! heart valve development + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34412 | termgenie | 2016-07-12 03:11:07 -0700 (Tue, 12 Jul 2016) | 4 lines TermGenie commit for user: rl reviewed by mec changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34412) +++ go_inferences.obo (working copy) @@ -88659,6 +88659,30 @@ is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization [Term] +id: GO:1905310 ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis +is_a: GO:0030334 {is_inferred="true"} ! regulation of cell migration +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation +is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation +is_a: GO:2000826 {is_inferred="true"} ! regulation of heart morphogenesis + +[Term] +id: GO:1905311 ! negative regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0030336 {is_inferred="true"} ! negative regulation of cell migration +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:1905293 {is_inferred="true"} ! negative regulation of neural crest cell differentiation +is_a: GO:1905310 {is_inferred="true"} ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis + +[Term] +id: GO:1905312 ! positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0030335 {is_inferred="true"} ! positive regulation of cell migration +is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:1905294 {is_inferred="true"} ! positive regulation of neural crest cell differentiation +is_a: GO:1905310 {is_inferred="true"} ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34404 | dph | 2016-07-11 11:53:16 -0700 (Mon, 11 Jul 2016) | 2 lines Changed intersection_of genus of transport along microtubule to transport. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34404) +++ go_inferences.obo (working copy) @@ -8711,11 +8711,6 @@ is_a: GO:0004871 {is_inferred="true"} ! signal transducer activity [Term] -id: GO:0008088 ! axo-dendritic transport -is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport - -[Term] id: GO:0008089 ! anterograde axonal transport is_a: GO:0098930 {is_inferred="true"} ! axonal transport @@ -13762,9 +13757,9 @@ is_a: GO:0060238 {is_inferred="true"} ! regulation of signal transduction involved in conjugation with cellular fusion [Term] -id: GO:0010970 ! establishment of localization by movement along microtubule -is_a: GO:0051234 {is_inferred="true"} ! establishment of localization -is_a: GO:1902578 {is_inferred="true"} ! single-organism localization +id: GO:0010970 ! transport along microtubule +is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport +is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0010971 ! positive regulation of G2/M transition of mitotic cell cycle @@ -22831,9 +22826,7 @@ [Term] id: GO:0031887 ! lipid particle transport along microtubule -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization +is_a: GO:0072384 {is_inferred="true"} ! organelle transport along microtubule [Term] id: GO:0031897 ! Tic complex @@ -31259,10 +31252,8 @@ [Term] id: GO:0042073 ! intraciliary transport -is_a: GO:0015031 {is_inferred="true"} ! protein transport is_a: GO:0031503 {is_inferred="true"} ! protein complex localization -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport -is_a: GO:0051649 {is_inferred="true"} ! establishment of localization in cell +is_a: GO:0098840 {is_inferred="true"} ! protein transport along microtubule [Term] id: GO:0042078 ! germ-line stem cell division @@ -55912,9 +55903,7 @@ [Term] id: GO:0072384 ! organelle transport along microtubule -is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] id: GO:0072387 ! flavin adenine dinucleotide metabolic process @@ -60882,9 +60871,7 @@ [Term] id: GO:0098840 ! protein transport along microtubule is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport -is_a: GO:0010970 {is_inferred="true"} ! establishment of localization by movement along microtubule -is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport -is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport +is_a: GO:0010970 {is_inferred="true"} ! transport along microtubule [Term] id: GO:0098841 ! protein localization to cell division site after cytokinesis @@ -61851,10 +61838,7 @@ [Term] id: GO:0099606 ! microtubule plus-end directed mitotic chromosome migration -is_a: GO:0010970 {is_inferred="true"} ! establishment of localization by movement along microtubule is_a: GO:0051303 {is_inferred="true"} ! establishment of chromosome localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization -is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] id: GO:0099613 ! protein targeting to cell wall ------------------------------------------------------------------------ r34348 | dph | 2016-07-09 07:33:35 -0700 (Sat, 09 Jul 2016) | 2 lines GH12525-closed changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34348) +++ go_inferences.obo (working copy) @@ -51081,6 +51081,10 @@ is_a: GO:0015081 {is_inferred="true"} ! sodium ion transmembrane transporter activity [Term] +id: GO:0061773 ! eNoSc complex +is_a: GO:0044452 {is_inferred="true"} ! nucleolar part + +[Term] id: GO:0065002 ! intracellular protein transmembrane transport is_a: GO:0006886 {is_inferred="true"} ! intracellular protein transport is_a: GO:0071806 {is_inferred="true"} ! protein transmembrane transport ------------------------------------------------------------------------ r34345 | dph | 2016-07-09 07:03:42 -0700 (Sat, 09 Jul 2016) | 2 lines GH12524-closed changes in entailments ------------------------------------------------------------------------ r34343 | dph | 2016-07-09 06:57:21 -0700 (Sat, 09 Jul 2016) | 2 lines GH12527-closed changes in entailments ------------------------------------------------------------------------ r34342 | dph | 2016-07-09 06:50:57 -0700 (Sat, 09 Jul 2016) | 2 lines GH12523-closed changes in entailments ------------------------------------------------------------------------ r34340 | dph | 2016-07-09 06:36:09 -0700 (Sat, 09 Jul 2016) | 2 lines GH12513-closed changes in entailments ------------------------------------------------------------------------ r34333 | termgenie | 2016-07-08 18:56:32 -0700 (Fri, 08 Jul 2016) | 2 lines TermGenie commit for user: vw reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34333) +++ go_inferences.obo (working copy) @@ -88655,14 +88655,22 @@ [Term] id: GO:1905307 ! response to miconazole -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0010243 {is_inferred="true"} ! response to organonitrogen compound +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound [Term] id: GO:1905308 ! cellular response to miconazole -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound +is_a: GO:0071417 {is_inferred="true"} ! cellular response to organonitrogen compound is_a: GO:1905307 {is_inferred="true"} ! response to miconazole [Term] +id: GO:1905309 ! positive regulation of cohesin loading +is_a: GO:0045876 {is_inferred="true"} ! positive regulation of sister chromatid cohesion +is_a: GO:0071922 {is_inferred="true"} ! regulation of cohesin loading +is_a: GO:1903829 {is_inferred="true"} ! positive regulation of cellular protein localization + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34235 | dph | 2016-07-06 12:14:29 -0700 (Wed, 06 Jul 2016) | 2 lines Fixed a typo in the synonym for GO:0010970. changes in entailments ------------------------------------------------------------------------ r34233 | termgenie | 2016-07-06 12:01:20 -0700 (Wed, 06 Jul 2016) | 3 lines TermGenie commit for user: al reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34233) +++ go_inferences.obo (working copy) @@ -88630,6 +88630,39 @@ is_a: GO:1905301 {is_inferred="true"} ! regulation of macropinocytosis [Term] +id: GO:1905304 ! regulation of cardiac myofibril assembly +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:0032956 {is_inferred="true"} ! regulation of actin cytoskeleton organization +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development +is_a: GO:1902115 {is_inferred="true"} ! regulation of organelle assembly +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation + +[Term] +id: GO:1905305 ! negative regulation of cardiac myofibril assembly +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0051494 {is_inferred="true"} ! negative regulation of cytoskeleton organization +is_a: GO:1902116 {is_inferred="true"} ! negative regulation of organelle assembly +is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly +is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation + +[Term] +id: GO:1905306 ! positive regulation of cardiac myofibril assembly +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0051495 {is_inferred="true"} ! positive regulation of cytoskeleton organization +is_a: GO:1902117 {is_inferred="true"} ! positive regulation of organelle assembly +is_a: GO:1905304 {is_inferred="true"} ! regulation of cardiac myofibril assembly +is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation + +[Term] +id: GO:1905307 ! response to miconazole +is_a: GO:0050896 {is_inferred="true"} ! response to stimulus + +[Term] +id: GO:1905308 ! cellular response to miconazole +is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:1905307 {is_inferred="true"} ! response to miconazole + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34225 | termgenie | 2016-07-05 07:09:51 -0700 (Tue, 05 Jul 2016) | 4 lines TermGenie commit for user: pad reviewed by dph changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34225) +++ go_inferences.obo (working copy) @@ -88616,6 +88616,20 @@ is_a: GO:1905298 {is_inferred="true"} ! regulation of intestinal epithelial cell development [Term] +id: GO:1905301 ! regulation of macropinocytosis +is_a: GO:0048548 {is_inferred="true"} ! regulation of pinocytosis + +[Term] +id: GO:1905302 ! negative regulation of macropinocytosis +is_a: GO:0048550 {is_inferred="true"} ! negative regulation of pinocytosis +is_a: GO:1905301 {is_inferred="true"} ! regulation of macropinocytosis + +[Term] +id: GO:1905303 ! positive regulation of macropinocytosis +is_a: GO:0048549 {is_inferred="true"} ! positive regulation of pinocytosis +is_a: GO:1905301 {is_inferred="true"} ! regulation of macropinocytosis + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34223 | dph | 2016-07-05 06:19:35 -0700 (Tue, 05 Jul 2016) | 2 lines Added synonym for exon-exon junction complex. GH12515-closed. changes in entailments ------------------------------------------------------------------------ r34215 | paola | 2016-07-04 02:19:05 -0700 (Mon, 04 Jul 2016) | 4 lines GH chromosome organization is_a children #8689 - work in progress - changes in entailments ------------------------------------------------------------------------ r34185 | termgenie | 2016-06-30 09:55:19 -0700 (Thu, 30 Jun 2016) | 4 lines TermGenie commit for user: rph reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34185) +++ go_inferences.obo (working copy) @@ -88597,6 +88597,25 @@ is_a: GO:1905295 {is_inferred="true"} ! regulation of neural crest cell fate specification [Term] +id: GO:1905298 ! regulation of intestinal epithelial cell development +is_a: GO:0030856 {is_inferred="true"} ! regulation of epithelial cell differentiation +is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development + +[Term] +id: GO:1905299 ! negative regulation of intestinal epithelial cell development +is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development +is_a: GO:0030857 {is_inferred="true"} ! negative regulation of epithelial cell differentiation +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905298 {is_inferred="true"} ! regulation of intestinal epithelial cell development + +[Term] +id: GO:1905300 ! positive regulation of intestinal epithelial cell development +is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development +is_a: GO:0030858 {is_inferred="true"} ! positive regulation of epithelial cell differentiation +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905298 {is_inferred="true"} ! regulation of intestinal epithelial cell development + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34177 | termgenie | 2016-06-29 17:38:08 -0700 (Wed, 29 Jun 2016) | 4 lines TermGenie commit for user: rl reviewed by dos changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34177) +++ go_inferences.obo (working copy) @@ -55807,17 +55807,14 @@ [Term] id: GO:0072335 ! regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation -is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation is_a: GO:0060828 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway -is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development +is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation [Term] id: GO:0072336 ! negative regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation -is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation -is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process -is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process is_a: GO:0072335 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation is_a: GO:0090090 {is_inferred="true"} ! negative regulation of canonical Wnt signaling pathway +is_a: GO:1905293 {is_inferred="true"} ! negative regulation of neural crest cell differentiation [Term] id: GO:0072337 ! modified amino acid transport @@ -55905,11 +55902,9 @@ [Term] id: GO:0072381 ! positive regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation -is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation -is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process -is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process is_a: GO:0072335 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway involved in neural crest cell differentiation is_a: GO:0090263 {is_inferred="true"} ! positive regulation of canonical Wnt signaling pathway +is_a: GO:1905294 {is_inferred="true"} ! positive regulation of neural crest cell differentiation [Term] id: GO:0072384 ! organelle transport along microtubule @@ -88563,6 +88558,45 @@ is_a: GO:1905289 {is_inferred="true"} ! regulation of CAMKK-AMPK signaling cascade [Term] +id: GO:1905292 ! regulation of neural crest cell differentiation +is_a: GO:0045595 {is_inferred="true"} ! regulation of cell differentiation +is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development + +[Term] +id: GO:1905293 ! negative regulation of neural crest cell differentiation +is_a: GO:0045596 {is_inferred="true"} ! negative regulation of cell differentiation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation + +[Term] +id: GO:1905294 ! positive regulation of neural crest cell differentiation +is_a: GO:0045597 {is_inferred="true"} ! positive regulation of cell differentiation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation + +[Term] +id: GO:1905295 ! regulation of neural crest cell fate specification +is_a: GO:0042659 {is_inferred="true"} ! regulation of cell fate specification +is_a: GO:0090299 {is_inferred="true"} ! regulation of neural crest formation +is_a: GO:1905292 {is_inferred="true"} ! regulation of neural crest cell differentiation + +[Term] +id: GO:1905296 ! negative regulation of neural crest cell fate specification +is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification +is_a: GO:0090301 {is_inferred="true"} ! negative regulation of neural crest formation +is_a: GO:1905293 {is_inferred="true"} ! negative regulation of neural crest cell differentiation +is_a: GO:1905295 {is_inferred="true"} ! regulation of neural crest cell fate specification + +[Term] +id: GO:1905297 ! positive regulation of neural crest cell fate specification +is_a: GO:0042660 {is_inferred="true"} ! positive regulation of cell fate specification +is_a: GO:0090300 {is_inferred="true"} ! positive regulation of neural crest formation +is_a: GO:1905294 {is_inferred="true"} ! positive regulation of neural crest cell differentiation +is_a: GO:1905295 {is_inferred="true"} ! regulation of neural crest cell fate specification + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34122 | davidos | 2016-06-24 05:35:14 -0700 (Fri, 24 Jun 2016) | 1 line Fixing bad PMIDS and non ascii chars changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34122) +++ go_inferences.obo (working copy) @@ -471,26 +471,6 @@ is_a: GO:0098763 {is_inferred="true"} ! mitotic cell cycle phase [Term] -id: GO:0000237 ! leptotene -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] -id: GO:0000238 ! zygotene -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] -id: GO:0000239 ! pachytene -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] -id: GO:0000240 ! diplotene -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] -id: GO:0000241 ! diakinesis -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] id: GO:0000245 ! spliceosomal complex assembly is_a: GO:0022618 {is_inferred="true"} ! ribonucleoprotein complex assembly @@ -823,7 +803,6 @@ [Term] id: GO:0000758 ! agglutination involved in conjugation with mutual genetic exchange -is_a: GO:0000771 {is_inferred="true"} ! agglutination involved in conjugation is_a: GO:0098630 {is_inferred="true"} ! aggregation of unicellular organisms [Term] @@ -984,10 +963,6 @@ is_a: GO:1903047 {is_inferred="true"} ! mitotic cell cycle process [Term] -id: GO:0000914 ! phragmoplast assembly -is_a: GO:1902407 {is_inferred="true"} ! assembly of actomyosin apparatus involved in mitotic cytokinesis - -[Term] id: GO:0000917 ! barrier septum assembly is_a: GO:0090529 {is_inferred="true"} ! cell septum assembly @@ -5167,6 +5142,7 @@ [Term] id: GO:0005639 ! integral component of nuclear inner membrane is_a: GO:0031229 {is_inferred="true"} ! intrinsic component of nuclear inner membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane [Term] id: GO:0005640 ! nuclear outer membrane @@ -5320,6 +5296,7 @@ [Term] id: GO:0005779 ! integral component of peroxisomal membrane is_a: GO:0031231 {is_inferred="true"} ! intrinsic component of peroxisomal membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane [Term] id: GO:0005785 ! signal recognition particle receptor complex @@ -5332,7 +5309,9 @@ [Term] id: GO:0005789 ! endoplasmic reticulum membrane +is_a: GO:0016020 {is_inferred="true"} ! membrane is_a: GO:0044425 {is_inferred="true"} ! membrane part +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part [Term] id: GO:0005795 ! Golgi stack @@ -6612,10 +6591,6 @@ is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus [Term] -id: GO:0006286 ! base-excision repair, base-free sugar-phosphate removal -is_a: GO:0098502 {is_inferred="true"} ! DNA dephosphorylation - -[Term] id: GO:0006288 ! base-excision repair, DNA ligation is_a: GO:0051103 {is_inferred="true"} ! DNA ligation involved in DNA repair @@ -7181,7 +7156,6 @@ is_a: GO:0017038 {is_inferred="true"} ! protein import is_a: GO:0034504 {is_inferred="true"} ! protein localization to nucleus is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902593 {is_inferred="true"} ! single-organism nuclear import [Term] @@ -7955,7 +7929,6 @@ [Term] id: GO:0006853 ! carnitine shuttle is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport -is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] id: GO:0006857 ! oligopeptide transport @@ -8193,10 +8166,6 @@ is_a: GO:0080171 {is_inferred="true"} ! lytic vacuole organization [Term] -id: GO:0007042 ! lysosomal lumen acidification -is_a: GO:0007035 {is_inferred="true"} ! vacuolar acidification - -[Term] id: GO:0007043 ! cell-cell junction assembly is_a: GO:0034329 {is_inferred="true"} ! cell junction assembly @@ -8341,10 +8310,6 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0007128 ! meiotic prophase I -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] id: GO:0007130 ! synaptonemal complex assembly is_a: GO:0022607 {is_inferred="true"} ! cellular component assembly @@ -8353,18 +8318,10 @@ is_a: GO:1903046 {is_inferred="true"} ! meiotic cell cycle process [Term] -id: GO:0007132 ! meiotic metaphase I -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] id: GO:0007133 ! meiotic anaphase I is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase [Term] -id: GO:0007134 ! meiotic telophase I -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] id: GO:0007136 ! meiotic prophase II is_a: GO:0098765 {is_inferred="true"} ! meiosis II cell cycle phase @@ -8383,7 +8340,6 @@ [Term] id: GO:0007162 ! negative regulation of cell adhesion is_a: GO:0030155 {is_inferred="true"} ! regulation of cell adhesion -is_a: GO:0048523 {is_inferred="true"} ! negative regulation of cellular process [Term] id: GO:0007175 ! negative regulation of epidermal growth factor-activated receptor activity @@ -8939,7 +8895,6 @@ [Term] id: GO:0008320 ! protein transmembrane transporter activity is_a: GO:0008565 {is_inferred="true"} ! protein transporter activity -is_a: GO:0022884 {is_inferred="true"} ! macromolecule transmembrane transporter activity [Term] id: GO:0008324 ! cation transmembrane transporter activity @@ -9177,10 +9132,6 @@ is_a: GO:1901681 {is_inferred="true"} ! sulfur compound binding [Term] -id: GO:0008979 ! prophage integrase activity -is_a: GO:0008907 {is_inferred="true"} ! integrase activity - -[Term] id: GO:0009050 ! glycopeptide catabolic process is_a: GO:0043171 {is_inferred="true"} ! peptide catabolic process is_a: GO:1901136 {is_inferred="true"} ! carbohydrate derivative catabolic process @@ -10544,6 +10495,10 @@ is_a: GO:0098543 {is_inferred="true"} ! detection of other organism [Term] +id: GO:0009615 ! response to virus +is_a: GO:0016032 {is_inferred="true"} ! viral process + +[Term] id: GO:0009654 ! photosystem II oxygen evolving complex is_a: GO:0044436 {is_inferred="true"} ! thylakoid part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex @@ -14484,8 +14439,8 @@ [Term] id: GO:0015031 ! protein transport -is_a: GO:0006810 {is_inferred="true"} ! transport is_a: GO:0008104 {is_inferred="true"} ! protein localization +is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] id: GO:0015050 ! methane monooxygenase complex @@ -15102,10 +15057,6 @@ is_a: GO:0008514 {is_inferred="true"} ! organic anion transmembrane transporter activity [Term] -id: GO:0015557 ! arginine targeting transmembrane transporter activity -is_a: GO:0008320 {is_inferred="true"} ! protein transmembrane transporter activity - -[Term] id: GO:0015567 ! alkane transporter activity is_a: GO:0005215 {is_inferred="true"} ! transporter activity @@ -16960,7 +16911,6 @@ [Term] id: GO:0016558 ! protein import into peroxisome matrix -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902589 {is_inferred="true"} ! single-organism organelle organization [Term] @@ -18808,10 +18758,6 @@ is_a: GO:1901566 {is_inferred="true"} ! organonitrogen compound biosynthetic process [Term] -id: GO:0019538 ! protein metabolic process -is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process - -[Term] id: GO:0019540 ! siderophore biosynthetic process from catechol is_a: GO:0009712 {is_inferred="true"} ! catechol-containing compound metabolic process @@ -19578,6 +19524,7 @@ [Term] id: GO:0020028 ! hemoglobin import +is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] @@ -19646,10 +19593,6 @@ is_a: GO:0021920 {is_inferred="true"} ! regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification [Term] -id: GO:0021784 ! postganglionic parasympathetic fiber development -is_a: GO:0048483 {is_inferred="true"} ! autonomic nervous system development - -[Term] id: GO:0021801 ! cerebral cortex radial glia guided migration is_a: GO:0022030 {is_inferred="true"} ! telencephalon glial cell migration @@ -19674,10 +19617,6 @@ is_a: GO:0022030 {is_inferred="true"} ! telencephalon glial cell migration [Term] -id: GO:0021832 ! cell-cell adhesion involved in cerebral cortex tangential migration using cell-cell interactions -is_a: GO:0016337 {is_inferred="true"} ! single organismal cell-cell adhesion - -[Term] id: GO:0021834 ! chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration is_a: GO:0050919 {is_inferred="true"} ! negative chemotaxis @@ -20092,7 +20031,6 @@ id: GO:0030050 ! vesicle transport along actin filament is_a: GO:0099515 {is_inferred="true"} ! actin filament-based transport is_a: GO:0099518 {is_inferred="true"} ! vesicle cytoskeletal trafficking -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -20200,7 +20138,6 @@ id: GO:0030150 ! protein import into mitochondrial matrix is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -20222,7 +20159,6 @@ [Term] id: GO:0030163 ! protein catabolic process -is_a: GO:0009057 {is_inferred="true"} ! macromolecule catabolic process is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process [Term] @@ -20242,6 +20178,7 @@ [Term] id: GO:0030173 ! integral component of Golgi membrane is_a: GO:0031228 {is_inferred="true"} ! intrinsic component of Golgi membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane [Term] id: GO:0030174 ! regulation of DNA-dependent DNA replication initiation @@ -20249,6 +20186,7 @@ [Term] id: GO:0030176 ! integral component of endoplasmic reticulum membrane +is_a: GO:0016021 {is_inferred="true"} ! integral component of membrane is_a: GO:0031227 {is_inferred="true"} ! intrinsic component of endoplasmic reticulum membrane [Term] @@ -20434,6 +20372,7 @@ [Term] id: GO:0030285 ! integral component of synaptic vesicle membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0098563 {is_inferred="true"} ! intrinsic component of synaptic vesicle membrane [Term] @@ -20854,6 +20793,9 @@ [Term] id: GO:0030660 ! Golgi-associated vesicle membrane +is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part +is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part +is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] @@ -20867,6 +20809,11 @@ is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] +id: GO:0030663 ! COPI-coated vesicle membrane +is_a: GO:0030660 {is_inferred="true"} ! Golgi-associated vesicle membrane +is_a: GO:0030662 {is_inferred="true"} ! coated vesicle membrane + +[Term] id: GO:0030666 ! endocytic vesicle membrane is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle is_a: GO:0098805 {is_inferred="true"} ! whole membrane @@ -21312,6 +21259,14 @@ is_a: GO:0030865 {is_inferred="true"} ! cortical cytoskeleton organization [Term] +id: GO:0030867 ! rough endoplasmic reticulum membrane +is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle + +[Term] +id: GO:0030868 ! smooth endoplasmic reticulum membrane +is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle + +[Term] id: GO:0030876 ! interleukin-20 receptor complex is_a: GO:0098802 {is_inferred="true"} ! plasma membrane receptor complex @@ -21523,7 +21478,6 @@ [Term] id: GO:0031022 ! nuclear migration along microfilament is_a: GO:0099515 {is_inferred="true"} ! actin filament-based transport -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -21760,10 +21714,12 @@ [Term] id: GO:0031165 ! integral component of contractile vacuolar membrane +is_a: GO:0031166 {is_inferred="true"} ! integral component of vacuolar membrane is_a: GO:0031311 {is_inferred="true"} ! intrinsic component of contractile vacuolar membrane [Term] id: GO:0031166 ! integral component of vacuolar membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0031310 {is_inferred="true"} ! intrinsic component of vacuolar membrane [Term] @@ -21821,10 +21777,38 @@ is_a: GO:0044724 {is_inferred="true"} ! single-organism carbohydrate catabolic process [Term] +id: GO:0031227 ! intrinsic component of endoplasmic reticulum membrane +is_a: GO:0031224 {is_inferred="true"} ! intrinsic component of membrane +is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part + +[Term] +id: GO:0031228 ! intrinsic component of Golgi membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part + +[Term] +id: GO:0031229 ! intrinsic component of nuclear inner membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044453 {is_inferred="true"} ! nuclear membrane part + +[Term] +id: GO:0031231 ! intrinsic component of peroxisomal membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044439 {is_inferred="true"} ! peroxisomal part + +[Term] id: GO:0031237 ! intrinsic component of periplasmic side of plasma membrane is_a: GO:0031233 {is_inferred="true"} ! intrinsic component of external side of plasma membrane [Term] +id: GO:0031243 ! intrinsic component of external side of cell outer membrane +is_a: GO:0031230 {is_inferred="true"} ! intrinsic component of cell outer membrane + +[Term] +id: GO:0031246 ! intrinsic component of periplasmic side of cell outer membrane +is_a: GO:0031230 {is_inferred="true"} ! intrinsic component of cell outer membrane + +[Term] id: GO:0031247 ! actin rod assembly is_a: GO:0051017 {is_inferred="true"} ! actin filament bundle assembly @@ -21937,6 +21921,7 @@ [Term] id: GO:0031300 ! intrinsic component of organelle membrane +is_a: GO:0031224 {is_inferred="true"} ! intrinsic component of membrane is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] @@ -21946,6 +21931,7 @@ [Term] id: GO:0031302 ! intrinsic component of endosome membrane is_a: GO:0031310 {is_inferred="true"} ! intrinsic component of vacuolar membrane +is_a: GO:0044440 {is_inferred="true"} ! endosomal part [Term] id: GO:0031303 ! integral component of endosome membrane @@ -21959,6 +21945,7 @@ [Term] id: GO:0031305 ! integral component of mitochondrial inner membrane is_a: GO:0031304 {is_inferred="true"} ! intrinsic component of mitochondrial inner membrane +is_a: GO:0032592 {is_inferred="true"} ! integral component of mitochondrial membrane [Term] id: GO:0031306 ! intrinsic component of mitochondrial outer membrane @@ -21967,12 +21954,24 @@ [Term] id: GO:0031307 ! integral component of mitochondrial outer membrane is_a: GO:0031306 {is_inferred="true"} ! intrinsic component of mitochondrial outer membrane +is_a: GO:0032592 {is_inferred="true"} ! integral component of mitochondrial membrane [Term] +id: GO:0031308 ! intrinsic component of nuclear outer membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044453 {is_inferred="true"} ! nuclear membrane part + +[Term] id: GO:0031309 ! integral component of nuclear outer membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0031308 {is_inferred="true"} ! intrinsic component of nuclear outer membrane [Term] +id: GO:0031310 ! intrinsic component of vacuolar membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044437 {is_inferred="true"} ! vacuolar part + +[Term] id: GO:0031313 ! extrinsic component of endosome membrane is_a: GO:0000306 {is_inferred="true"} ! extrinsic component of vacuolar membrane @@ -22125,15 +22124,23 @@ is_a: GO:0048584 {is_inferred="true"} ! positive regulation of response to stimulus [Term] +id: GO:0031350 ! intrinsic component of plastid membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044435 {is_inferred="true"} ! plastid part + +[Term] id: GO:0031351 ! integral component of plastid membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0031350 {is_inferred="true"} ! intrinsic component of plastid membrane [Term] id: GO:0031353 ! integral component of plastid inner membrane +is_a: GO:0031351 {is_inferred="true"} ! integral component of plastid membrane is_a: GO:0031352 {is_inferred="true"} ! intrinsic component of plastid inner membrane [Term] id: GO:0031355 ! integral component of plastid outer membrane +is_a: GO:0031351 {is_inferred="true"} ! integral component of plastid membrane is_a: GO:0031354 {is_inferred="true"} ! intrinsic component of plastid outer membrane [Term] @@ -22143,6 +22150,7 @@ [Term] id: GO:0031359 ! integral component of chloroplast outer membrane +is_a: GO:0031355 {is_inferred="true"} ! integral component of plastid outer membrane is_a: GO:0031358 {is_inferred="true"} ! intrinsic component of chloroplast outer membrane [Term] @@ -24514,6 +24522,10 @@ is_a: GO:0044421 {is_inferred="true"} ! extracellular region part [Term] +id: GO:0032580 ! Golgi cisterna membrane +is_a: GO:0000139 {is_inferred="true"} ! Golgi membrane + +[Term] id: GO:0032584 ! growth cone membrane is_a: GO:0097458 {is_inferred="true"} ! neuron part @@ -24532,12 +24544,12 @@ [Term] id: GO:0032592 ! integral component of mitochondrial membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0098573 {is_inferred="true"} ! intrinsic component of mitochondrial membrane [Term] id: GO:0032594 ! protein transport within lipid bilayer is_a: GO:0051668 {is_inferred="true"} ! localization within membrane -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -25914,6 +25926,10 @@ is_a: GO:0044464 {is_inferred="true"} ! cell part [Term] +id: GO:0033017 ! sarcoplasmic reticulum membrane +is_a: GO:0098588 {is_inferred="true"} ! bounding membrane of organelle + +[Term] id: GO:0033020 ! cyclopentanol metabolic process is_a: GO:0006066 {is_inferred="true"} ! alcohol metabolic process is_a: GO:1901360 {is_inferred="true"} ! organic cyclic compound metabolic process @@ -27596,6 +27612,7 @@ [Term] id: GO:0034045 ! pre-autophagosomal structure membrane +is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part is_a: GO:0098805 {is_inferred="true"} ! whole membrane [Term] @@ -28442,6 +28459,7 @@ [Term] id: GO:0034436 ! glycoprotein transport +is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization is_a: GO:1901264 {is_inferred="true"} ! carbohydrate derivative transport [Term] @@ -28656,7 +28674,6 @@ [Term] id: GO:0034642 ! mitochondrion migration along actin filament is_a: GO:0099515 {is_inferred="true"} ! actin filament-based transport -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -30738,8 +30755,13 @@ is_a: GO:0031246 {is_inferred="true"} ! intrinsic component of periplasmic side of cell outer membrane [Term] +id: GO:0036418 ! intrinsic component of mycolate outer membrane +is_a: GO:0031230 {is_inferred="true"} ! intrinsic component of cell outer membrane + +[Term] id: GO:0036419 ! integral component of mycolate outer membrane is_a: GO:0036418 {is_inferred="true"} ! intrinsic component of mycolate outer membrane +is_a: GO:0045203 {is_inferred="true"} ! integral component of cell outer membrane [Term] id: GO:0036444 ! calcium ion transmembrane import into mitochondrion @@ -31055,6 +31077,10 @@ is_a: GO:0044423 {is_inferred="true"} ! virion part [Term] +id: GO:0039667 ! viral entry into host cell via pilus retraction +is_a: GO:0016032 {is_inferred="true"} ! viral process + +[Term] id: GO:0039688 ! viral double stranded DNA replication via reverse transcription is_a: GO:0016070 {is_inferred="true"} ! RNA metabolic process @@ -32743,10 +32769,6 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] -id: GO:0042740 ! exogenous antibiotic catabolic process -is_a: GO:0017001 {is_inferred="true"} ! antibiotic catabolic process - -[Term] id: GO:0042742 ! defense response to bacterium is_a: GO:0009617 {is_inferred="true"} ! response to bacterium is_a: GO:0098542 {is_inferred="true"} ! defense response to other organism @@ -33331,6 +33353,7 @@ [Term] id: GO:0042953 ! lipoprotein transport is_a: GO:0044872 {is_inferred="true"} ! lipoprotein localization +is_a: GO:0045184 {is_inferred="true"} ! establishment of protein localization is_a: GO:0071702 {is_inferred="true"} ! organic substance transport [Term] @@ -33918,7 +33941,6 @@ id: GO:0043303 ! mast cell degranulation is_a: GO:0032418 {is_inferred="true"} ! lysosome localization is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -34836,10 +34858,6 @@ is_a: GO:0019829 {is_inferred="true"} ! cation-transporting ATPase activity [Term] -id: GO:0043690 ! cell-cell adhesion involved in flocculation via cell wall protein-carbohydrate interaction -is_a: GO:0043689 {is_inferred="true"} ! cell-cell adhesion involved in flocculation - -[Term] id: GO:0043692 ! monoterpene metabolic process is_a: GO:0042214 {is_inferred="true"} ! terpene metabolic process @@ -34863,10 +34881,6 @@ is_a: GO:0098740 {is_inferred="true"} ! multi organism cell adhesion [Term] -id: GO:0043707 ! cell adhesion involved in single-species biofilm formation in or on host organism -is_a: GO:0043709 {is_inferred="true"} ! cell adhesion involved in single-species biofilm formation - -[Term] id: GO:0043709 ! cell adhesion involved in single-species biofilm formation is_a: GO:0043708 {is_inferred="true"} ! cell adhesion involved in biofilm formation @@ -35199,6 +35213,7 @@ [Term] id: GO:0044214 ! spanning component of plasma membrane is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane +is_a: GO:0089717 {is_inferred="true"} ! spanning component of membrane [Term] id: GO:0044225 ! apical pole of neuron @@ -35682,6 +35697,7 @@ [Term] id: GO:0044764 ! multi-organism cellular process +is_a: GO:0009987 {is_inferred="true"} ! cellular process is_a: GO:0051704 {is_inferred="true"} ! multi-organism process [Term] @@ -35800,11 +35816,6 @@ is_a: GO:0044433 {is_inferred="true"} ! cytoplasmic vesicle part [Term] -id: GO:0044844 ! meiotic interphase II -is_a: GO:0051328 {is_inferred="true"} ! meiotic interphase -is_a: GO:0098765 {is_inferred="true"} ! meiosis II cell cycle phase - -[Term] id: GO:0044853 ! plasma membrane raft is_a: GO:0098590 {is_inferred="true"} ! plasma membrane region @@ -35884,10 +35895,6 @@ is_a: GO:0072598 {is_inferred="true"} ! protein localization to chloroplast [Term] -id: GO:0045037 ! protein import into chloroplast stroma -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization - -[Term] id: GO:0045039 ! protein import into mitochondrial inner membrane is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane @@ -35905,7 +35912,6 @@ id: GO:0045041 ! protein import into mitochondrial intermembrane space is_a: GO:0070585 {is_inferred="true"} ! protein localization to mitochondrion is_a: GO:0072655 {is_inferred="true"} ! establishment of protein localization to mitochondrion -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1990542 {is_inferred="true"} ! mitochondrial transmembrane transport [Term] @@ -36906,7 +36912,6 @@ [Term] id: GO:0045476 ! nurse cell apoptotic process -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0010623 {is_inferred="true"} ! programmed cell death involved in cell development is_a: GO:0022412 {is_inferred="true"} ! cellular process involved in reproduction in multicellular organism is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -43704,7 +43709,7 @@ is_a: GO:0002832 {is_inferred="true"} ! negative regulation of response to biotic stimulus is_a: GO:0031348 {is_inferred="true"} ! negative regulation of defense response is_a: GO:0032102 {is_inferred="true"} ! negative regulation of response to external stimulus -is_a: GO:0043901 {is_inferred="true"} ! negative regulation of multi-organism process +is_a: GO:0048525 {is_inferred="true"} ! negative regulation of viral process is_a: GO:0050688 {is_inferred="true"} ! regulation of defense response to virus [Term] @@ -43713,7 +43718,7 @@ is_a: GO:0002831 {is_inferred="true"} ! regulation of response to biotic stimulus is_a: GO:0031347 {is_inferred="true"} ! regulation of defense response is_a: GO:0032101 {is_inferred="true"} ! regulation of response to external stimulus -is_a: GO:0043900 {is_inferred="true"} ! regulation of multi-organism process +is_a: GO:0050792 {is_inferred="true"} ! regulation of viral process [Term] id: GO:0050696 ! trichloroethylene catabolic process @@ -44277,10 +44282,6 @@ is_a: GO:0048871 {is_inferred="true"} ! multicellular organismal homeostasis [Term] -id: GO:0050892 ! intestinal absorption -is_a: GO:0022600 {is_inferred="true"} ! digestive system process - -[Term] id: GO:0050897 ! cobalt ion binding is_a: GO:0046914 {is_inferred="true"} ! transition metal ion binding @@ -47747,7 +47748,6 @@ [Term] id: GO:0060136 ! embryonic process involved in female pregnancy is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process -is_a: GO:0048609 {is_inferred="true"} ! multicellular organismal reproductive process [Term] id: GO:0060142 ! regulation of syncytium formation by plasma membrane fusion @@ -48735,7 +48735,6 @@ [Term] id: GO:0060530 ! smooth muscle cell differentiation involved in prostate glandular acinus development -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process is_a: GO:0051145 {is_inferred="true"} ! smooth muscle cell differentiation @@ -49233,7 +49232,6 @@ [Term] id: GO:0060706 ! cell differentiation involved in embryonic placenta development -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0030154 {is_inferred="true"} ! cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -49370,7 +49368,6 @@ [Term] id: GO:0060742 ! epithelial cell differentiation involved in prostate gland development -is_a: GO:0003006 {is_inferred="true"} ! developmental process involved in reproduction is_a: GO:0030855 {is_inferred="true"} ! epithelial cell differentiation is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process @@ -49902,10 +49899,6 @@ is_a: GO:0042127 {is_inferred="true"} ! regulation of cell proliferation [Term] -id: GO:0061009 ! common bile duct development -is_a: GO:0035295 {is_inferred="true"} ! tube development - -[Term] id: GO:0061011 ! hepatic duct development is_a: GO:0061009 {is_inferred="true"} ! common bile duct development @@ -50993,10 +50986,6 @@ is_a: GO:0044702 {is_inferred="true"} ! single organism reproductive process [Term] -id: GO:0061691 ! detoxification of hydrogen peroxide -is_a: GO:0042743 {is_inferred="true"} ! hydrogen peroxide metabolic process - -[Term] id: GO:0061704 ! glycolytic process from sucrose is_a: GO:0005987 {is_inferred="true"} ! sucrose catabolic process @@ -52233,7 +52222,6 @@ [Term] id: GO:0070586 ! cell-cell adhesion involved in gastrulation -is_a: GO:0016337 {is_inferred="true"} ! single organismal cell-cell adhesion is_a: GO:0098742 {is_inferred="true"} ! cell-cell adhesion via plasma-membrane adhesion molecules [Term] @@ -53141,10 +53129,6 @@ is_a: GO:0071025 {is_inferred="true"} ! RNA surveillance [Term] -id: GO:0071050 ! snoRNA polyadenylation -is_a: GO:0031126 {is_inferred="true"} ! snoRNA 3'-end processing - -[Term] id: GO:0071052 ! alpha9-beta1 integrin-ADAM1 complex is_a: GO:0098797 {is_inferred="true"} ! plasma membrane protein complex @@ -54363,6 +54347,10 @@ is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical [Term] +id: GO:0071458 ! integral component of cytoplasmic side of endoplasmic reticulum membrane +is_a: GO:0030176 {is_inferred="true"} ! integral component of endoplasmic reticulum membrane + +[Term] id: GO:0071462 ! cellular response to water stimulus is_a: GO:0009415 {is_inferred="true"} ! response to water is_a: GO:0071229 {is_inferred="true"} ! cellular response to acid chemical @@ -54492,6 +54480,10 @@ is_a: GO:0045229 {is_inferred="true"} ! external encapsulating structure organization [Term] +id: GO:0071556 ! integral component of lumenal side of endoplasmic reticulum membrane +is_a: GO:0030176 {is_inferred="true"} ! integral component of endoplasmic reticulum membrane + +[Term] id: GO:0071574 ! protein localization to medial cortex is_a: GO:0072741 {is_inferred="true"} ! protein localization to cell division site @@ -54612,6 +54604,7 @@ [Term] id: GO:0071627 ! integral component of fungal-type vacuolar membrane +is_a: GO:0031166 {is_inferred="true"} ! integral component of vacuolar membrane is_a: GO:0071628 {is_inferred="true"} ! intrinsic component of fungal-type vacuolar membrane [Term] @@ -55214,6 +55207,11 @@ is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton [Term] +id: GO:0071989 ! establishment of protein localization to spindle pole body +is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body +is_a: GO:0072594 {is_inferred="true"} ! establishment of protein localization to organelle + +[Term] id: GO:0071990 ! maintenance of protein location to spindle pole body is_a: GO:0022402 {is_inferred="true"} ! cell cycle process @@ -55917,7 +55915,6 @@ id: GO:0072384 ! organelle transport along microtubule is_a: GO:0030705 {is_inferred="true"} ! cytoskeleton-dependent intracellular transport is_a: GO:0051656 {is_inferred="true"} ! establishment of organelle localization -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -55960,14 +55957,6 @@ is_a: GO:0035556 {is_inferred="true"} ! intracellular signal transduction [Term] -id: GO:0072397 ! detection of stimulus involved in cytokinesis checkpoint -is_a: GO:0072412 {is_inferred="true"} ! detection of stimulus involved in mitotic cell cycle checkpoint - -[Term] -id: GO:0072398 ! signal transduction involved in cytokinesis checkpoint -is_a: GO:0072413 {is_inferred="true"} ! signal transduction involved in mitotic cell cycle checkpoint - -[Term] id: GO:0072400 ! detection of stimulus involved in mitotic DNA integrity checkpoint is_a: GO:0072412 {is_inferred="true"} ! detection of stimulus involved in mitotic cell cycle checkpoint @@ -56192,10 +56181,6 @@ is_a: GO:0006812 {is_inferred="true"} ! cation transport [Term] -id: GO:0072520 ! seminiferous tubule development -is_a: GO:0035295 {is_inferred="true"} ! tube development - -[Term] id: GO:0072521 ! purine-containing compound metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0046483 {is_inferred="true"} ! heterocycle metabolic process @@ -57451,7 +57436,6 @@ [Term] id: GO:0080162 ! intracellular auxin transport -is_a: GO:0060919 {is_inferred="true"} ! auxin influx is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -58149,7 +58133,6 @@ [Term] id: GO:0090110 ! cargo loading into COPII-coated vesicle is_a: GO:0051668 {is_inferred="true"} ! localization within membrane -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization is_a: GO:1902582 {is_inferred="true"} ! single-organism intracellular transport [Term] @@ -58643,7 +58626,6 @@ [Term] id: GO:0090250 ! cell-cell adhesion involved in establishment of planar polarity -is_a: GO:0016337 {is_inferred="true"} ! single organismal cell-cell adhesion is_a: GO:0098742 {is_inferred="true"} ! cell-cell adhesion via plasma-membrane adhesion molecules [Term] @@ -59230,6 +59212,11 @@ is_a: GO:0098815 {is_inferred="true"} ! modulation of excitatory postsynaptic potential [Term] +id: GO:0090401 ! viral-induced premature senescence +is_a: GO:0044111 {is_inferred="true"} ! development involved in symbiotic interaction +is_a: GO:0044764 {is_inferred="true"} ! multi-organism cellular process + +[Term] id: GO:0090407 ! organophosphate biosynthetic process is_a: GO:0019637 {is_inferred="true"} ! organophosphate metabolic process is_a: GO:1901576 {is_inferred="true"} ! organic substance biosynthetic process @@ -60065,15 +60052,13 @@ is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] -id: GO:0097629 ! extrinsic component of omegasome membrane -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part - -[Term] id: GO:0097630 ! intrinsic component of omegasome membrane -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane +is_a: GO:0044424 {is_inferred="true"} ! intracellular part [Term] id: GO:0097631 ! integral component of omegasome membrane +is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane is_a: GO:0097630 {is_inferred="true"} ! intrinsic component of omegasome membrane [Term] @@ -60082,10 +60067,12 @@ [Term] id: GO:0097633 ! intrinsic component of pre-autophagosomal structure membrane +is_a: GO:0031224 {is_inferred="true"} ! intrinsic component of membrane is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] id: GO:0097634 ! integral component of pre-autophagosomal structure membrane +is_a: GO:0016021 {is_inferred="true"} ! integral component of membrane is_a: GO:0097633 {is_inferred="true"} ! intrinsic component of pre-autophagosomal structure membrane [Term] @@ -60254,12 +60241,12 @@ [Term] id: GO:0098540 ! lumenal side of trans-Golgi network transport vesicle membrane -is_a: GO:0098547 {is_inferred="true"} ! lumenal side of Golgi membrane +is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part [Term] id: GO:0098541 ! cytoplasmic side of trans-Golgi network transport vesicle membrane +is_a: GO:0044431 {is_inferred="true"} ! Golgi apparatus part is_a: GO:0098539 {is_inferred="true"} ! cytoplasmic side of transport vesicle membrane -is_a: GO:0098548 {is_inferred="true"} ! cytoplasmic side of Golgi membrane [Term] id: GO:0098542 ! defense response to other organism @@ -60308,7 +60295,7 @@ [Term] id: GO:0098553 ! lumenal side of endoplasmic reticulum membrane is_a: GO:0044432 {is_inferred="true"} ! endoplasmic reticulum part -is_a: GO:0098576 {is_inferred="true"} ! lumenal side of membrane +is_a: GO:0098552 {is_inferred="true"} ! side of membrane [Term] id: GO:0098554 ! cytoplasmic side of endoplasmic reticulum membrane @@ -60318,6 +60305,7 @@ [Term] id: GO:0098555 ! lumenal side of rough endoplasmic reticulum membrane is_a: GO:0098553 {is_inferred="true"} ! lumenal side of endoplasmic reticulum membrane +is_a: GO:0098576 {is_inferred="true"} ! lumenal side of membrane [Term] id: GO:0098556 ! cytoplasmic side of rough endoplasmic reticulum membrane @@ -60332,6 +60320,7 @@ id: GO:0098558 ! lumenal side of smooth endoplasmic reticulum membrane is_a: GO:0097425 {is_inferred="true"} ! smooth endoplasmic reticulum part is_a: GO:0098553 {is_inferred="true"} ! lumenal side of endoplasmic reticulum membrane +is_a: GO:0098576 {is_inferred="true"} ! lumenal side of membrane [Term] id: GO:0098559 ! cytoplasmic side of early endosome membrane @@ -60691,6 +60680,7 @@ [Term] id: GO:0098752 ! integral component of the cytoplasmic side of the plasma membrane is_a: GO:0005887 {is_inferred="true"} ! integral component of plasma membrane +is_a: GO:0031235 {is_inferred="true"} ! intrinsic component of the cytoplasmic side of the plasma membrane [Term] id: GO:0098753 ! anchored component of the cytoplasmic side of the plasma membrane @@ -60697,14 +60687,6 @@ is_a: GO:0046658 {is_inferred="true"} ! anchored component of plasma membrane [Term] -id: GO:0098765 ! meiosis II cell cycle phase -is_a: GO:0098762 {is_inferred="true"} ! meiotic cell cycle phase - -[Term] -id: GO:0098768 ! meiotic prometaphase I -is_a: GO:0098764 {is_inferred="true"} ! meiosis I cell cycle phase - -[Term] id: GO:0098771 ! inorganic ion homeostasis is_a: GO:0050801 {is_inferred="true"} ! ion homeostasis @@ -63536,7 +63518,7 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039533 {is_inferred="true"} ! regulation of MDA-5 signaling pathway -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -63546,7 +63528,7 @@ is_a: GO:0031349 {is_inferred="true"} ! positive regulation of defense response is_a: GO:0032103 {is_inferred="true"} ! positive regulation of response to external stimulus is_a: GO:0039535 {is_inferred="true"} ! regulation of RIG-I signaling pathway -is_a: GO:0043902 {is_inferred="true"} ! positive regulation of multi-organism process +is_a: GO:0048524 {is_inferred="true"} ! positive regulation of viral process is_a: GO:1902533 {is_inferred="true"} ! positive regulation of intracellular signal transduction [Term] @@ -63603,7 +63585,6 @@ [Term] id: GO:1900262 ! regulation of DNA-directed DNA polymerase activity is_a: GO:0051338 {is_inferred="true"} ! regulation of transferase activity -is_a: GO:0090329 {is_inferred="true"} ! regulation of DNA-dependent DNA replication is_a: GO:2000278 {is_inferred="true"} ! regulation of DNA biosynthetic process [Term] @@ -70013,10 +69994,6 @@ is_a: GO:2000639 {is_inferred="true"} ! negative regulation of SREBP signaling pathway [Term] -id: GO:1901487 ! negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels -is_a: GO:1901486 {is_inferred="true"} ! negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process - -[Term] id: GO:1901488 ! positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process is_a: GO:0050789 {is_inferred="true"} ! regulation of biological process @@ -70678,7 +70655,6 @@ [Term] id: GO:1901619 ! tRNA methylation in response to nitrogen starvation -is_a: GO:0030488 {is_inferred="true"} ! tRNA methylation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process [Term] @@ -73526,10 +73502,6 @@ is_a: GO:2001244 {is_inferred="true"} ! positive regulation of intrinsic apoptotic signaling pathway [Term] -id: GO:1902178 ! fibroblast growth factor receptor apoptotic signaling pathway -is_a: GO:0008543 {is_inferred="true"} ! fibroblast growth factor receptor signaling pathway - -[Term] id: GO:1902179 ! verruculogen metabolic process is_a: GO:0006725 {is_inferred="true"} ! cellular aromatic compound metabolic process is_a: GO:0018904 {is_inferred="true"} ! ether metabolic process @@ -74794,13 +74766,12 @@ [Term] id: GO:1902440 ! protein localization to mitotic spindle pole body -is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body is_a: GO:1902480 {is_inferred="true"} ! protein localization to mitotic spindle [Term] id: GO:1902441 ! protein localization to meiotic spindle pole body is_a: GO:0022414 {is_inferred="true"} ! reproductive process -is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body +is_a: GO:0072698 {is_inferred="true"} ! protein localization to microtubule cytoskeleton [Term] id: GO:1902442 ! regulation of ripoptosome assembly involved in necroptotic process @@ -75246,12 +75217,12 @@ [Term] id: GO:1902542 ! regulation of protein localization to mitotic spindle pole body -is_a: GO:1902363 {is_inferred="true"} ! regulation of protein localization to spindle pole body +is_a: GO:1903827 {is_inferred="true"} ! regulation of cellular protein localization [Term] id: GO:1902543 ! negative regulation of protein localization to mitotic spindle pole body -is_a: GO:1902364 {is_inferred="true"} ! negative regulation of protein localization to spindle pole body is_a: GO:1902542 {is_inferred="true"} ! regulation of protein localization to mitotic spindle pole body +is_a: GO:1903828 {is_inferred="true"} ! negative regulation of cellular protein localization [Term] id: GO:1902544 ! regulation of DNA N-glycosylase activity @@ -75432,11 +75403,13 @@ id: GO:1902582 ! single-organism intracellular transport is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:1902583 ! multi-organism intracellular transport is_a: GO:0044766 {is_inferred="true"} ! multi-organism transport is_a: GO:0046907 {is_inferred="true"} ! intracellular transport +is_a: GO:1902581 {is_inferred="true"} ! multi-organism cellular localization [Term] id: GO:1902584 ! positive regulation of response to water deprivation @@ -79077,7 +79050,7 @@ [Term] id: GO:1903349 ! omegasome membrane -is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part +is_a: GO:0044424 {is_inferred="true"} ! intracellular part [Term] id: GO:1903350 ! response to dopamine @@ -79552,7 +79525,6 @@ id: GO:1903445 ! protein transport from ciliary membrane to plasma membrane is_a: GO:0032594 {is_inferred="true"} ! protein transport within lipid bilayer is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane -is_a: GO:0090002 {is_inferred="true"} ! establishment of protein localization to plasma membrane is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery [Term] @@ -89291,6 +89263,7 @@ [Term] id: GO:1990673 ! intrinsic component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane +is_a: GO:0031300 {is_inferred="true"} ! intrinsic component of organelle membrane is_a: GO:0044444 {is_inferred="true"} ! cytoplasmic part [Term] @@ -89312,18 +89285,22 @@ [Term] id: GO:1990701 ! integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane is_a: GO:0031301 {is_inferred="true"} ! integral component of organelle membrane +is_a: GO:1990673 {is_inferred="true"} ! intrinsic component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane [Term] id: GO:1990702 ! integral component of Golgi cis cisterna membrane is_a: GO:0030173 {is_inferred="true"} ! integral component of Golgi membrane +is_a: GO:1990693 {is_inferred="true"} ! intrinsic component of Golgi cis cisterna membrane [Term] id: GO:1990703 ! integral component of Golgi medial cisterna membrane is_a: GO:0030173 {is_inferred="true"} ! integral component of Golgi membrane +is_a: GO:1990694 {is_inferred="true"} ! intrinsic component of Golgi medial cisterna membrane [Term] id: GO:1990704 ! integral component of Golgi trans cisterna membrane is_a: GO:0030173 {is_inferred="true"} ! integral component of Golgi membrane +is_a: GO:1990695 {is_inferred="true"} ! intrinsic component of Golgi trans cisterna membrane [Term] id: GO:1990707 ! nuclear subtelomeric heterochromatin @@ -89464,10 +89441,8 @@ [Term] id: GO:1990852 ! protein transport along microtubule to spindle pole body -is_a: GO:0071988 {is_inferred="true"} ! protein localization to spindle pole body is_a: GO:0071989 {is_inferred="true"} ! establishment of protein localization to spindle pole body is_a: GO:0098840 {is_inferred="true"} ! protein transport along microtubule -is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:1990854 ! vacuole-ER tethering @@ -89475,6 +89450,7 @@ [Term] id: GO:1990862 ! nuclear membrane complex Bqt3-Bqt4 +is_a: GO:0044453 {is_inferred="true"} ! nuclear membrane part is_a: GO:0098796 {is_inferred="true"} ! membrane protein complex [Term] @@ -89537,7 +89513,8 @@ [Term] id: GO:1990954 ! establishment of protein localization to meiotic spindle pole body -is_a: GO:0022414 {is_inferred="true"} ! reproductive process +is_a: GO:0071989 {is_inferred="true"} ! establishment of protein localization to spindle pole body +is_a: GO:1902441 {is_inferred="true"} ! protein localization to meiotic spindle pole body [Term] id: GO:1990957 ! NPHP complex @@ -89687,7 +89664,6 @@ [Term] id: GO:2000026 ! regulation of multicellular organismal development -is_a: GO:0050793 {is_inferred="true"} ! regulation of developmental process is_a: GO:0051239 {is_inferred="true"} ! regulation of multicellular organismal process [Term] ------------------------------------------------------------------------ r34114 | termgenie | 2016-06-23 23:33:06 -0700 (Thu, 23 Jun 2016) | 4 lines TermGenie commit for user: sl reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34114) +++ go_inferences.obo (working copy) @@ -88577,6 +88577,20 @@ is_a: GO:0034390 {is_inferred="true"} ! smooth muscle cell apoptotic process [Term] +id: GO:1905289 ! regulation of CAMKK-AMPK signaling cascade +is_a: GO:0050848 {is_inferred="true"} ! regulation of calcium-mediated signaling + +[Term] +id: GO:1905290 ! negative regulation of CAMKK-AMPK signaling cascade +is_a: GO:0050849 {is_inferred="true"} ! negative regulation of calcium-mediated signaling +is_a: GO:1905289 {is_inferred="true"} ! regulation of CAMKK-AMPK signaling cascade + +[Term] +id: GO:1905291 ! positive regulation of CAMKK-AMPK signaling cascade +is_a: GO:0050850 {is_inferred="true"} ! positive regulation of calcium-mediated signaling +is_a: GO:1905289 {is_inferred="true"} ! regulation of CAMKK-AMPK signaling cascade + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34106 | cjm | 2016-06-23 10:51:21 -0700 (Thu, 23 Jun 2016) | 1 line removed extraneous whitespace - checks are picky about this changes in entailments ------------------------------------------------------------------------ r34099 | termgenie | 2016-06-23 07:03:49 -0700 (Thu, 23 Jun 2016) | 2 lines TermGenie commit for user: rph reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34099) +++ go_inferences.obo (working copy) @@ -88573,6 +88573,10 @@ is_a: GO:0010971 {is_inferred="true"} ! positive regulation of G2/M transition of mitotic cell cycle [Term] +id: GO:1905288 ! vascular associated smooth muscle cell apoptotic process +is_a: GO:0034390 {is_inferred="true"} ! smooth muscle cell apoptotic process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process ------------------------------------------------------------------------ r34092 | termgenie | 2016-06-22 12:30:13 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: hjd reviewed by tb changes in entailments ------------------------------------------------------------------------ r34090 | termgenie | 2016-06-22 12:02:37 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: bf reviewed by tb changes in entailments ------------------------------------------------------------------------ r34088 | termgenie | 2016-06-22 11:53:50 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: hjd reviewed by tb changes in entailments ------------------------------------------------------------------------ r34083 | termgenie | 2016-06-22 10:06:24 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: bf reviewed by tb changes in entailments ------------------------------------------------------------------------ r34083 | termgenie | 2016-06-22 10:06:24 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: bf reviewed by tb changes in entailments ------------------------------------------------------------------------ r34082 | termgenie | 2016-06-22 10:00:59 -0700 (Wed, 22 Jun 2016) | 2 lines TermGenie commit for user: bf reviewed by tb changes in entailments ------------------------------------------------------------------------ r34074 | tberardi | 2016-06-21 17:24:20 -0700 (Tue, 21 Jun 2016) | 1 line adding in parents for TGFF generated protein complex terms changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34074) +++ go_inferences.obo (working copy) @@ -89534,6 +89534,16 @@ is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process [Term] +id: GO:1990971 ! EMILIN complex +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component +is_a: GO:0098637 {is_inferred="true"} ! protein complex involved in cell-matrix adhesion + +[Term] +id: GO:1990972 ! multimerin complex +is_a: GO:0044420 {is_inferred="true"} ! extracellular matrix component +is_a: GO:0098637 {is_inferred="true"} ! protein complex involved in cell-matrix adhesion + +[Term] id: GO:2000001 ! regulation of DNA damage checkpoint is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus ------------------------------------------------------------------------ r34068 | termgenie | 2016-06-21 14:46:12 -0700 (Tue, 21 Jun 2016) | 2 lines TermGenie commit for user: al reviewed by tb changes in entailments NOTE: a large section of this diff is spurious, as we change the pipeline to avoid adding dupes into go_inferences.obo Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34068) +++ go_inferences.obo (working copy) SPURIOUS DIFF DELETED ------------------------------------------------------------------------ r34063 | tberardi | 2016-06-21 14:12:37 -0700 (Tue, 21 Jun 2016) | 1 line test commit after P5 edit, one synonym added changes in entailments ------------------------------------------------------------------------ r34056 | termgenie | 2016-06-20 13:02:59 -0700 (Mon, 20 Jun 2016) | 4 lines TermGenie commit for user: bc reviewed by tb changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34056) +++ go_inferences.obo (working copy) @@ -135409,6 +135409,7 @@ id: GO:0061132 ! pancreas induction is_a: GO:0001759 {is_inferred="true"} ! organ induction is_a: GO:0060688 {is_inferred="true"} ! regulation of morphogenesis of a branching structure +is_a: GO:1905278 {is_inferred="true"} ! positive regulation of epithelial tube formation [Term] id: GO:0061133 ! endopeptidase activator activity @@ -147986,6 +147987,7 @@ id: GO:0072106 ! regulation of ureteric bud formation is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development is_a: GO:0061217 {is_inferred="true"} ! regulation of mesonephros development +is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation is_a: GO:2000027 {is_inferred="true"} ! regulation of organ morphogenesis [Term] @@ -147993,6 +147995,7 @@ is_a: GO:0040019 {is_inferred="true"} ! positive regulation of embryonic development is_a: GO:0061213 {is_inferred="true"} ! positive regulation of mesonephros development is_a: GO:0072106 {is_inferred="true"} ! regulation of ureteric bud formation +is_a: GO:1905278 {is_inferred="true"} ! positive regulation of epithelial tube formation [Term] id: GO:0072108 ! positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis @@ -155035,6 +155038,7 @@ is_a: GO:0045995 {is_inferred="true"} ! regulation of embryonic development is_a: GO:0051960 {is_inferred="true"} ! regulation of nervous system development is_a: GO:0090175 {is_inferred="true"} ! regulation of establishment of planar polarity +is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation [Term] id: GO:0090179 ! planar cell polarity pathway involved in neural tube closure @@ -191175,6 +191179,58 @@ is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] +id: GO:1905276 ! regulation of epithelial tube formation +is_a: GO:0022603 {is_inferred="true"} ! regulation of anatomical structure morphogenesis +is_a: GO:2000026 {is_inferred="true"} ! regulation of multicellular organismal development + +[Term] +id: GO:1905277 ! negative regulation of epithelial tube formation +is_a: GO:0051093 {is_inferred="true"} ! negative regulation of developmental process +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation + +[Term] +id: GO:1905278 ! positive regulation of epithelial tube formation +is_a: GO:0051094 {is_inferred="true"} ! positive regulation of developmental process +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905276 {is_inferred="true"} ! regulation of epithelial tube formation + +[Term] +id: GO:1905279 ! regulation of retrograde transport, endosome to Golgi +is_a: GO:0060627 {is_inferred="true"} ! regulation of vesicle-mediated transport +is_a: GO:1903335 {is_inferred="true"} ! regulation of vacuolar transport +is_a: GO:1903649 {is_inferred="true"} ! regulation of cytoplasmic transport + +[Term] +id: GO:1905280 ! negative regulation of retrograde transport, endosome to Golgi +is_a: GO:1903336 {is_inferred="true"} ! negative regulation of vacuolar transport +is_a: GO:1903650 {is_inferred="true"} ! negative regulation of cytoplasmic transport +is_a: GO:1905279 {is_inferred="true"} ! regulation of retrograde transport, endosome to Golgi + +[Term] +id: GO:1905281 ! positive regulation of retrograde transport, endosome to Golgi +is_a: GO:1903337 {is_inferred="true"} ! positive regulation of vacuolar transport +is_a: GO:1903651 {is_inferred="true"} ! positive regulation of cytoplasmic transport +is_a: GO:1905279 {is_inferred="true"} ! regulation of retrograde transport, endosome to Golgi + +[Term] +id: GO:1905282 ! regulation of epidermal growth factor receptor signaling pathway involved in heart process +is_a: GO:0042058 {is_inferred="true"} ! regulation of epidermal growth factor receptor signaling pathway +is_a: GO:0044057 {is_inferred="true"} ! regulation of system process + +[Term] +id: GO:1905283 ! negative regulation of epidermal growth factor receptor signaling pathway involved in heart process +is_a: GO:0042059 {is_inferred="true"} ! negative regulation of epidermal growth factor receptor signaling pathway +is_a: GO:0051241 {is_inferred="true"} ! negative regulation of multicellular organismal process +is_a: GO:1905282 {is_inferred="true"} ! regulation of epidermal growth factor receptor signaling pathway involved in heart process + +[Term] +id: GO:1905284 ! positive regulation of epidermal growth factor receptor signaling pathway involved in heart process +is_a: GO:0045742 {is_inferred="true"} ! positive regulation of epidermal growth factor receptor signaling pathway +is_a: GO:0051240 {is_inferred="true"} ! positive regulation of multicellular organismal process +is_a: GO:1905282 {is_inferred="true"} ! regulation of epidermal growth factor receptor signaling pathway involved in heart process + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -195881,6 +195937,7 @@ id: GO:2000168 ! negative regulation of planar cell polarity pathway involved in neural tube closure is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:0051961 {is_inferred="true"} ! negative regulation of nervous system development +is_a: GO:1905277 {is_inferred="true"} ! negative regulation of epithelial tube formation is_a: GO:2000051 {is_inferred="true"} ! negative regulation of non-canonical Wnt signaling pathway is_a: GO:2000167 {is_inferred="true"} ! regulation of planar cell polarity pathway involved in neural tube closure @@ -198611,6 +198668,7 @@ is_a: GO:0040037 {is_inferred="true"} ! negative regulation of fibroblast growth factor receptor signaling pathway is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:0061218 {is_inferred="true"} ! negative regulation of mesonephros development +is_a: GO:1905277 {is_inferred="true"} ! negative regulation of epithelial tube formation is_a: GO:2000702 {is_inferred="true"} ! regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation [Term] @@ -198776,6 +198834,7 @@ is_a: GO:0009968 {is_inferred="true"} ! negative regulation of signal transduction is_a: GO:0045992 {is_inferred="true"} ! negative regulation of embryonic development is_a: GO:0061218 {is_inferred="true"} ! negative regulation of mesonephros development +is_a: GO:1905277 {is_inferred="true"} ! negative regulation of epithelial tube formation is_a: GO:2000733 {is_inferred="true"} ! regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation [Term] ------------------------------------------------------------------------ r34051 | davidos | 2016-06-20 06:02:51 -0700 (Mon, 20 Jun 2016) | 1 line Some cleanup in the transport branch - testing out ease of automating given new GO pipeline. changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34051) +++ go_inferences.obo (working copy) @@ -41560,7 +41560,6 @@ [Term] id: GO:0015837 ! amine transport -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0071702 {is_inferred="true"} ! organic substance transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport @@ -69879,7 +69878,7 @@ [Term] id: GO:0032975 ! amino acid transmembrane import into vacuole is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport -is_a: GO:0044745 {is_inferred="true"} ! amino acid transmembrane import +is_a: GO:0043090 {is_inferred="true"} ! amino acid import [Term] id: GO:0032976 ! release of matrix enzymes from mitochondria @@ -80351,7 +80350,6 @@ id: GO:0035377 ! transepithelial water transport is_a: GO:0006833 {is_inferred="true"} ! water transport is_a: GO:0042045 {is_inferred="true"} ! epithelial fluid transport -is_a: GO:0070633 {is_inferred="true"} ! transepithelial transport [Term] id: GO:0035378 ! carbon dioxide transmembrane transport @@ -84180,8 +84178,9 @@ [Term] id: GO:0036249 ! cadmium ion import into vacuole +is_a: GO:0000041 {is_inferred="true"} ! transition metal ion transport is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport -is_a: GO:0070574 {is_inferred="true"} ! cadmium ion transmembrane transport +is_a: GO:0098662 {is_inferred="true"} ! inorganic cation transmembrane transport [Term] id: GO:0036250 ! peroxisome transport along microtubule @@ -87706,7 +87705,7 @@ [Term] id: GO:0042045 ! epithelial fluid transport is_a: GO:0042044 {is_inferred="true"} ! fluid transport -is_a: GO:0055085 {is_inferred="true"} ! transmembrane transport +is_a: GO:0070633 {is_inferred="true"} ! transepithelial transport [Term] id: GO:0042046 ! W-molybdopterin cofactor metabolic process @@ -91438,7 +91437,6 @@ [Term] id: GO:0042886 ! amide transport -is_a: GO:0044765 {is_inferred="true"} ! single-organism transport is_a: GO:0071705 {is_inferred="true"} ! nitrogen compound transport [Term] @@ -156348,7 +156346,7 @@ [Term] id: GO:0090453 ! aspartate transmembrane import into vacuole is_a: GO:0015810 {is_inferred="true"} ! aspartate transport -is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034486 {is_inferred="true"} ! vacuolar transmembrane transport is_a: GO:0098656 {is_inferred="true"} ! anion transmembrane transport [Term] @@ -193479,6 +193477,7 @@ [Term] id: GO:1990573 ! potassium ion import across plasma membrane +is_a: GO:0071805 {is_inferred="true"} ! potassium ion transmembrane transport is_a: GO:0098739 {is_inferred="true"} ! import across plasma membrane [Term] @@ -193552,7 +193551,7 @@ [Term] id: GO:1990591 ! asparagine transmembrane import into vacuole -is_a: GO:0032975 {is_inferred="true"} ! amino acid transmembrane import into vacuole +is_a: GO:0034487 {is_inferred="true"} ! vacuolar amino acid transmembrane transport is_a: GO:0090469 {is_inferred="true"} ! asparagine import is_a: GO:1903713 {is_inferred="true"} ! asparagine transmembrane transport ------------------------------------------------------------------------ r34049 | termgenie | 2016-06-20 02:17:55 -0700 (Mon, 20 Jun 2016) | 2 lines TermGenie commit for user: sp reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34049) +++ go_inferences.obo (working copy) @@ -195014,6 +195014,11 @@ is_a: GO:0016831 {is_inferred="true"} ! carboxy-lyase activity [Term] +id: GO:1990966 ! ATP generation from poly-ADP-D-ribose +is_a: GO:0043170 {is_inferred="true"} ! macromolecule metabolic process +is_a: GO:0046034 {is_inferred="true"} ! ATP metabolic process + +[Term] id: GO:2000001 ! regulation of DNA damage checkpoint is_a: GO:1901976 {is_inferred="true"} ! regulation of cell cycle checkpoint is_a: GO:2001020 {is_inferred="true"} ! regulation of response to DNA damage stimulus ------------------------------------------------------------------------ r34029 | termgenie | 2016-06-19 12:23:22 -0700 (Sun, 19 Jun 2016) | 4 lines TermGenie commit for user: als reviewed by pr changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34029) +++ go_inferences.obo (working copy) @@ -56034,8 +56034,9 @@ [Term] id: GO:0021905 ! forebrain-midbrain boundary formation +is_a: GO:0044767 {is_inferred="true"} ! single-organism developmental process +is_a: GO:0048646 {is_inferred="true"} ! anatomical structure formation involved in morphogenesis is_a: GO:0048856 {is_inferred="true"} ! anatomical structure development -is_a: GO:0048859 {is_inferred="true"} ! formation of anatomical boundary [Term] id: GO:0021906 ! hindbrain-spinal cord boundary formation @@ -132663,7 +132664,6 @@ [Term] id: GO:0060532 ! bronchus cartilage development is_a: GO:0051216 {is_inferred="true"} ! cartilage development -is_a: GO:0061448 {is_inferred="true"} ! connective tissue development [Term] id: GO:0060533 ! bronchus cartilage morphogenesis @@ -190952,7 +190952,7 @@ [Term] id: GO:1905225 ! response to thyrotropin-releasing hormone -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0043434 {is_inferred="true"} ! response to peptide hormone [Term] id: GO:1905226 ! regulation of adhesion of symbiont to host epithelial cell @@ -190970,16 +190970,16 @@ [Term] id: GO:1905229 ! cellular response to thyrotropin-releasing hormone -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071375 {is_inferred="true"} ! cellular response to peptide hormone stimulus is_a: GO:1905225 {is_inferred="true"} ! response to thyrotropin-releasing hormone [Term] id: GO:1905230 ! response to borneol -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0033993 {is_inferred="true"} ! response to lipid [Term] id: GO:1905231 ! cellular response to borneol -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071396 {is_inferred="true"} ! cellular response to lipid is_a: GO:1905230 {is_inferred="true"} ! response to borneol [Term] @@ -191033,11 +191033,13 @@ [Term] id: GO:1905242 ! response to 3,3',5-triiodo-L-thyronine -is_a: GO:0050896 {is_inferred="true"} ! response to stimulus +is_a: GO:0014070 {is_inferred="true"} ! response to organic cyclic compound +is_a: GO:0043200 {is_inferred="true"} ! response to amino acid [Term] id: GO:1905243 ! cellular response to 3,3',5-triiodo-L-thyronine -is_a: GO:0070887 {is_inferred="true"} ! cellular response to chemical stimulus +is_a: GO:0071230 {is_inferred="true"} ! cellular response to amino acid stimulus +is_a: GO:0071407 {is_inferred="true"} ! cellular response to organic cyclic compound is_a: GO:1905242 {is_inferred="true"} ! response to 3,3',5-triiodo-L-thyronine [Term] @@ -191113,16 +191115,16 @@ [Term] id: GO:1905264 ! blasticidin S metabolic process -is_a: GO:0008152 {is_inferred="true"} ! metabolic process +is_a: GO:0006213 {is_inferred="true"} ! pyrimidine nucleoside metabolic process [Term] id: GO:1905265 ! blasticidin S catabolic process -is_a: GO:0009056 {is_inferred="true"} ! catabolic process +is_a: GO:0046135 {is_inferred="true"} ! pyrimidine nucleoside catabolic process is_a: GO:1905264 {is_inferred="true"} ! blasticidin S metabolic process [Term] id: GO:1905266 ! blasticidin S biosynthetic process -is_a: GO:0009058 {is_inferred="true"} ! biosynthetic process +is_a: GO:0046134 {is_inferred="true"} ! pyrimidine nucleoside biosynthetic process is_a: GO:1905264 {is_inferred="true"} ! blasticidin S metabolic process [Term] @@ -191146,12 +191148,33 @@ is_a: GO:0021895 {is_inferred="true"} ! cerebral cortex neuron differentiation [Term] +id: GO:1905271 ! regulation of proton-transporting ATP synthase activity, rotational mechanism +is_a: GO:0010155 {is_inferred="true"} ! regulation of proton transport +is_a: GO:0032412 {is_inferred="true"} ! regulation of ion transmembrane transporter activity +is_a: GO:0043462 {is_inferred="true"} ! regulation of ATPase activity +is_a: GO:1904062 {is_inferred="true"} ! regulation of cation transmembrane transport + +[Term] +id: GO:1905272 ! negative regulation of proton-transporting ATP synthase activity, rotational mechanism +is_a: GO:0032413 {is_inferred="true"} ! negative regulation of ion transmembrane transporter activity +is_a: GO:0032780 {is_inferred="true"} ! negative regulation of ATPase activity +is_a: GO:1904063 {is_inferred="true"} ! negative regulation of cation transmembrane transport +is_a: GO:1905271 {is_inferred="true"} ! regulation of proton-transporting ATP synthase activity, rotational mechanism + +[Term] +id: GO:1905273 ! positive regulation of proton-transporting ATP synthase activity, rotational mechanism +is_a: GO:0032414 {is_inferred="true"} ! positive regulation of ion transmembrane transporter activity +is_a: GO:0032781 {is_inferred="true"} ! positive regulation of ATPase activity +is_a: GO:1904064 {is_inferred="true"} ! positive regulation of cation transmembrane transport +is_a: GO:1905271 {is_inferred="true"} ! regulation of proton-transporting ATP synthase activity, rotational mechanism + +[Term] id: GO:1905274 ! regulation of modification of postsynaptic actin cytoskeleton is_a: GO:1905244 {is_inferred="true"} ! regulation of modification of synaptic structure [Term] id: GO:1905275 ! Rohon-Beard neuron differentiation -is_a: GO:0030154 {is_inferred="true"} ! cell differentiation +is_a: GO:0030182 {is_inferred="true"} ! neuron differentiation [Term] id: GO:1990000 ! amyloid fibril formation ------------------------------------------------------------------------ r34011 | davidos | 2016-06-17 09:47:51 -0700 (Fri, 17 Jun 2016) | 1 line Fixing errors in EC defs adding in previous commit - these were causing false equivalence between named classes changes in entailments ------------------------------------------------------------------------ r34011 | davidos | 2016-06-17 09:47:51 -0700 (Fri, 17 Jun 2016) | 1 line Fixing errors in EC defs adding in previous commit - these were causing false equivalence between named classes changes in entailments Index: go_inferences.obo =================================================================== --- go_inferences.obo (revision 34011) +++ go_inferences.obo (working copy) @@ -32947,10 +32947,9 @@ [Term] id: GO:0009997 ! negative regulation of cardioblast cell fate specification -is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification is_a: GO:0042686 {is_inferred="true"} ! regulation of cardioblast cell fate specification -is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation -is_a: GO:2000737 {is_inferred="true"} ! negative regulation of stem cell differentiation +is_a: GO:0051892 {is_inferred="true"} ! negative regulation of cardioblast differentiation +is_a: GO:2000044 {is_inferred="true"} ! negative regulation of cardiac cell fate specification [Term] id: GO:0009998 ! negative regulation of retinal cone cell fate specification @@ -90512,9 +90511,8 @@ [Term] id: GO:0042686 ! regulation of cardioblast cell fate specification -is_a: GO:0042659 {is_inferred="true"} ! regulation of cell fate specification -is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation -is_a: GO:2000736 {is_inferred="true"} ! regulation of stem cell differentiation +is_a: GO:0051890 {is_inferred="true"} ! regulation of cardioblast differentiation +is_a: GO:2000043 {is_inferred="true"} ! regulation of cardiac cell fate specification [Term] id: GO:0042688 ! crystal cell differentiation @@ -125125,6 +125123,23 @@ is_a: GO:0051887 {is_inferred="true"} ! regulation of exogen [Term] +id: GO:0051890 ! regulation of cardioblast differentiation +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation +is_a: GO:2000736 {is_inferred="true"} ! regulation of stem cell differentiation + +[Term] +id: GO:0051891 ! positive regulation of cardioblast differentiation +is_a: GO:0051890 {is_inferred="true"} ! regulation of cardioblast differentiation +is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000738 {is_inferred="true"} ! positive regulation of stem cell differentiation + +[Term] +id: GO:0051892 ! negative regulation of cardioblast differentiation +is_a: GO:0051890 {is_inferred="true"} ! regulation of cardioblast differentiation +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000737 {is_inferred="true"} ! negative regulation of stem cell differentiation + +[Term] id: GO:0051893 ! regulation of focal adhesion assembly is_a: GO:0001952 {is_inferred="true"} ! regulation of cell-matrix adhesion is_a: GO:0090109 {is_inferred="true"} ! regulation of cell-substrate junction assembly @@ -129680,26 +129695,20 @@ [Term] id: GO:0055018 ! regulation of cardiac muscle fiber development -is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation -is_a: GO:0055024 {is_inferred="true"} ! regulation of cardiac muscle tissue development is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation [Term] id: GO:0055019 ! negative regulation of cardiac muscle fiber development is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development -is_a: GO:0051154 {is_inferred="true"} ! negative regulation of striated muscle cell differentiation is_a: GO:0055018 {is_inferred="true"} ! regulation of cardiac muscle fiber development -is_a: GO:0055026 {is_inferred="true"} ! negative regulation of cardiac muscle tissue development -is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation [Term] id: GO:0055020 ! positive regulation of cardiac muscle fiber development is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development -is_a: GO:0051155 {is_inferred="true"} ! positive regulation of striated muscle cell differentiation is_a: GO:0055018 {is_inferred="true"} ! regulation of cardiac muscle fiber development -is_a: GO:0055025 {is_inferred="true"} ! positive regulation of cardiac muscle tissue development -is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation [Term] id: GO:0055021 ! regulation of cardiac muscle tissue growth @@ -134995,10 +135004,9 @@ id: GO:0061050 ! regulation of cell growth involved in cardiac muscle cell development is_a: GO:0001558 {is_inferred="true"} ! regulation of cell growth is_a: GO:0010611 {is_inferred="true"} ! regulation of cardiac muscle hypertrophy -is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation is_a: GO:0055021 {is_inferred="true"} ! regulation of cardiac muscle tissue growth is_a: GO:0060284 {is_inferred="true"} ! regulation of cell development -is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation [Term] id: GO:0061051 ! positive regulation of cell growth involved in cardiac muscle cell development @@ -135005,10 +135013,9 @@ is_a: GO:0010613 {is_inferred="true"} ! positive regulation of cardiac muscle hypertrophy is_a: GO:0010720 {is_inferred="true"} ! positive regulation of cell development is_a: GO:0030307 {is_inferred="true"} ! positive regulation of cell growth -is_a: GO:0051155 {is_inferred="true"} ! positive regulation of striated muscle cell differentiation is_a: GO:0055023 {is_inferred="true"} ! positive regulation of cardiac muscle tissue growth is_a: GO:0061050 {is_inferred="true"} ! regulation of cell growth involved in cardiac muscle cell development -is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation [Term] id: GO:0061052 ! negative regulation of cell growth involved in cardiac muscle cell development @@ -135015,10 +135022,9 @@ is_a: GO:0010614 {is_inferred="true"} ! negative regulation of cardiac muscle hypertrophy is_a: GO:0010721 {is_inferred="true"} ! negative regulation of cell development is_a: GO:0030308 {is_inferred="true"} ! negative regulation of cell growth -is_a: GO:0051154 {is_inferred="true"} ! negative regulation of striated muscle cell differentiation is_a: GO:0055022 {is_inferred="true"} ! negative regulation of cardiac muscle tissue growth is_a: GO:0061050 {is_inferred="true"} ! regulation of cell growth involved in cardiac muscle cell development -is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation [Term] id: GO:0061053 ! somite development @@ -137979,7 +137985,9 @@ [Term] id: GO:0061707 ! extracellular exosome macropinocytosis +is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization is_a: GO:1902538 {is_inferred="true"} ! single-organism macropinocytosis +is_a: GO:1902580 {is_inferred="true"} ! single-organism cellular localization [Term] id: GO:0061708 ! tRNA-5-taurinomethyluridine 2-sulfurtransferase @@ -138575,6 +138583,11 @@ is_a: GO:0048029 {is_inferred="true"} ! monosaccharide binding [Term] +id: GO:0070062 ! extracellular exosome +is_a: GO:0031988 {is_inferred="true"} ! membrane-bounded vesicle +is_a: GO:1903561 {is_inferred="true"} ! extracellular vesicle + +[Term] id: GO:0070063 ! RNA polymerase binding is_a: GO:0019899 {is_inferred="true"} ! enzyme binding @@ -147128,6 +147141,10 @@ is_a: GO:0015137 {is_inferred="true"} ! citrate transmembrane transporter activity [Term] +id: GO:0071914 ! prominosome +is_a: GO:1903561 {is_inferred="true"} ! extracellular vesicle + +[Term] id: GO:0071915 ! protein-lysine lysylation is_a: GO:0018205 {is_inferred="true"} ! peptidyl-lysine modification @@ -147366,6 +147383,7 @@ [Term] id: GO:0071971 ! extracellular exosome assembly +is_a: GO:0016050 {is_inferred="true"} ! vesicle organization is_a: GO:0070925 {is_inferred="true"} ! organelle assembly [Term] @@ -162418,6 +162436,13 @@ is_a: GO:0097458 {is_inferred="true"} ! neuron part [Term] +id: GO:0098953 ! receptor diffusion trapping +is_a: GO:0031503 {is_inferred="true"} ! protein complex localization +is_a: GO:0051668 {is_inferred="true"} ! localization within membrane +is_a: GO:0072657 {is_inferred="true"} ! protein localization to membrane +is_a: GO:1990778 {is_inferred="true"} ! protein localization to cell periphery + +[Term] id: GO:0098954 ! presynaptic endosome membrane is_a: GO:0010008 {is_inferred="true"} ! endosome membrane is_a: GO:0044456 {is_inferred="true"} ! synapse part @@ -162503,7 +162528,9 @@ [Term] id: GO:0098970 ! postsynaptic neurotransmitter receptor diffusion trapping +is_a: GO:0097120 {is_inferred="true"} ! receptor localization to synapse is_a: GO:0099628 {is_inferred="true"} ! neurotransmitter receptor diffusion trapping +is_a: GO:0099645 {is_inferred="true"} ! neurotransmitter receptor localization to postsynaptic specialization membrane [Term] id: GO:0098971 ! anterograde dendritic transport of neurotransmitter receptor complex @@ -171515,28 +171542,22 @@ [Term] id: GO:1901295 ! regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment is_a: GO:0010453 {is_inferred="true"} ! regulation of cell fate commitment -is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation -is_a: GO:0055024 {is_inferred="true"} ! regulation of cardiac muscle tissue development is_a: GO:1905066 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway involved in heart development -is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation [Term] id: GO:1901296 ! negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment is_a: GO:0010454 {is_inferred="true"} ! negative regulation of cell fate commitment -is_a: GO:0051154 {is_inferred="true"} ! negative regulation of striated muscle cell differentiation -is_a: GO:0055026 {is_inferred="true"} ! negative regulation of cardiac muscle tissue development is_a: GO:1901295 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment is_a: GO:1905067 {is_inferred="true"} ! negative regulation of canonical Wnt signaling pathway involved in heart development -is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000726 {is_inferred="true"} ! negative regulation of cardiac muscle cell differentiation [Term] id: GO:1901297 ! positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment is_a: GO:0010455 {is_inferred="true"} ! positive regulation of cell fate commitment -is_a: GO:0051155 {is_inferred="true"} ! positive regulation of striated muscle cell differentiation -is_a: GO:0055025 {is_inferred="true"} ! positive regulation of cardiac muscle tissue development is_a: GO:1901295 {is_inferred="true"} ! regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment is_a: GO:1905068 {is_inferred="true"} ! positive regulation of canonical Wnt signaling pathway involved in heart development -is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000727 {is_inferred="true"} ! positive regulation of cardiac muscle cell differentiation [Term] id: GO:1901298 ! regulation of hydrogen peroxide-mediated programmed cell death @@ -177186,6 +177207,15 @@ is_a: GO:0008104 {is_inferred="true"} ! protein localization [Term] +id: GO:1902415 ! regulation of mRNA binding +is_a: GO:1905214 {is_inferred="true"} ! regulation of RNA binding + +[Term] +id: GO:1902416 ! positive regulation of mRNA binding +is_a: GO:1902415 {is_inferred="true"} ! regulation of mRNA binding +is_a: GO:1905216 {is_inferred="true"} ! positive regulation of RNA binding + +[Term] id: GO:1902417 ! (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity is_a: GO:0042947 {is_inferred="true"} ! glucoside transmembrane transporter activity @@ -179796,6 +179826,20 @@ is_a: GO:1903862 {is_inferred="true"} ! positive regulation of oxidative phosphorylation [Term] +id: GO:1902959 ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1905245 {is_inferred="true"} ! regulation of aspartic-type peptidase activity + +[Term] +id: GO:1902960 ! negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1902959 {is_inferred="true"} ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1905246 {is_inferred="true"} ! negative regulation of aspartic-type peptidase activity + +[Term] +id: GO:1902961 ! positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1902959 {is_inferred="true"} ! regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process +is_a: GO:1905247 {is_inferred="true"} ! positive regulation of aspartic-type peptidase activity + +[Term] id: GO:1902962 ! regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process is_a: GO:1902991 {is_inferred="true"} ! regulation of amyloid precursor protein catabolic process is_a: GO:1904683 {is_inferred="true"} ! regulation of metalloendopeptidase activity @@ -184035,17 +184079,17 @@ [Term] id: GO:1903837 ! regulation of mRNA 3'-UTR binding -is_a: GO:1905214 {is_inferred="true"} ! regulation of RNA binding +is_a: GO:1902415 {is_inferred="true"} ! regulation of mRNA binding [Term] id: GO:1903838 ! negative regulation of mRNA 3'-UTR binding is_a: GO:1903837 {is_inferred="true"} ! regulation of mRNA 3'-UTR binding -is_a: GO:1905215 {is_inferred="true"} ! negative regulation of RNA binding +is_a: GO:1904572 {is_inferred="true"} ! negative regulation of mRNA binding [Term] id: GO:1903839 ! positive regulation of mRNA 3'-UTR binding +is_a: GO:1902416 {is_inferred="true"} ! positive regulation of mRNA binding is_a: GO:1903837 {is_inferred="true"} ! regulation of mRNA 3'-UTR binding -is_a: GO:1905216 {is_inferred="true"} ! positive regulation of RNA binding [Term] id: GO:1903840 ! response to arsenite(3-) @@ -187692,18 +187736,23 @@ is_a: GO:1904569 {is_inferred="true"} ! regulation of selenocysteine incorporation [Term] +id: GO:1904572 ! negative regulation of mRNA binding +is_a: GO:1902415 {is_inferred="true"} ! regulation of mRNA binding +is_a: GO:1905215 {is_inferred="true"} ! negative regulation of RNA binding + +[Term] id: GO:1904573 ! regulation of selenocysteine insertion sequence binding -is_a: GO:1905214 {is_inferred="true"} ! regulation of RNA binding +is_a: GO:1902415 {is_inferred="true"} ! regulation of mRNA binding [Term] id: GO:1904574 ! negative regulation of selenocysteine insertion sequence binding +is_a: GO:1904572 {is_inferred="true"} ! negative regulation of mRNA binding is_a: GO:1904573 {is_inferred="true"} ! regulation of selenocysteine insertion sequence binding -is_a: GO:1905215 {is_inferred="true"} ! negative regulation of RNA binding [Term] id: GO:1904575 ! positive regulation of selenocysteine insertion sequence binding +is_a: GO:1902416 {is_inferred="true"} ! positive regulation of mRNA binding is_a: GO:1904573 {is_inferred="true"} ! regulation of selenocysteine insertion sequence binding -is_a: GO:1905216 {is_inferred="true"} ! positive regulation of RNA binding [Term] id: GO:1904576 ! response to tunicamycin @@ -191099,6 +191148,14 @@ is_a: GO:0021895 {is_inferred="true"} ! cerebral cortex neuron differentiation [Term] +id: GO:1905274 ! regulation of modification of postsynaptic actin cytoskeleton +is_a: GO:1905244 {is_inferred="true"} ! regulation of modification of synaptic structure + +[Term] +id: GO:1905275 ! Rohon-Beard neuron differentiation +is_a: GO:0030154 {is_inferred="true"} ! cell differentiation + +[Term] id: GO:1990000 ! amyloid fibril formation is_a: GO:0019538 {is_inferred="true"} ! protein metabolic process is_a: GO:0044710 {is_inferred="true"} ! single-organism metabolic process @@ -193359,6 +193416,8 @@ [Term] id: GO:1990563 ! extracellular exosome complex is_a: GO:0043234 {is_inferred="true"} ! protein complex +is_a: GO:0044421 {is_inferred="true"} ! extracellular region part +is_a: GO:0044422 {is_inferred="true"} ! organelle part [Term] id: GO:1990564 ! protein polyufmylation @@ -194191,6 +194250,7 @@ [Term] id: GO:1990771 ! clathrin-mediated extracellular exosome endocytosis +is_a: GO:0051650 {is_inferred="true"} ! establishment of vesicle localization is_a: GO:0072583 {is_inferred="true"} ! clathrin-mediated endocytosis [Term] @@ -195140,6 +195200,17 @@ is_a: GO:2000780 {is_inferred="true"} ! negative regulation of double-strand break repair [Term] +id: GO:2000043 ! regulation of cardiac cell fate specification +is_a: GO:0042659 {is_inferred="true"} ! regulation of cell fate specification +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation + +[Term] +id: GO:2000044 ! negative regulation of cardiac cell fate specification +is_a: GO:0009996 {is_inferred="true"} ! negative regulation of cell fate specification +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000043 {is_inferred="true"} ! regulation of cardiac cell fate specification + +[Term] id: GO:2000045 ! regulation of G1/S transition of mitotic cell cycle is_a: GO:1901990 {is_inferred="true"} ! regulation of mitotic cell cycle phase transition is_a: GO:1902806 {is_inferred="true"} ! regulation of cell cycle G1/S phase transition @@ -198450,15 +198521,13 @@ [Term] id: GO:2000690 ! regulation of cardiac muscle cell myoblast differentiation is_a: GO:0045661 {is_inferred="true"} ! regulation of myoblast differentiation -is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation -is_a: GO:2000736 {is_inferred="true"} ! regulation of stem cell differentiation +is_a: GO:0051890 {is_inferred="true"} ! regulation of cardioblast differentiation [Term] id: GO:2000691 ! negative regulation of cardiac muscle cell myoblast differentiation is_a: GO:0045662 {is_inferred="true"} ! negative regulation of myoblast differentiation -is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:0051892 {is_inferred="true"} ! negative regulation of cardioblast differentiation is_a: GO:2000690 {is_inferred="true"} ! regulation of cardiac muscle cell myoblast differentiation -is_a: GO:2000737 {is_inferred="true"} ! negative regulation of stem cell differentiation [Term] id: GO:2000692 ! negative regulation of seed maturation @@ -198500,9 +198569,8 @@ [Term] id: GO:2000700 ! positive regulation of cardiac muscle cell myoblast differentiation is_a: GO:0045663 {is_inferred="true"} ! positive regulation of myoblast differentiation -is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:0051891 {is_inferred="true"} ! positive regulation of cardioblast differentiation is_a: GO:2000690 {is_inferred="true"} ! regulation of cardiac muscle cell myoblast differentiation -is_a: GO:2000738 {is_inferred="true"} ! positive regulation of stem cell differentiation [Term] id: GO:2000701 ! glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation @@ -198608,6 +198676,43 @@ is_a: GO:0045944 {is_inferred="true"} ! positive regulation of transcription from RNA polymerase II promoter [Term] +id: GO:2000722 ! regulation of cardiac vascular smooth muscle cell differentiation +is_a: GO:1905063 {is_inferred="true"} ! regulation of vascular smooth muscle cell differentiation +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation + +[Term] +id: GO:2000723 ! negative regulation of cardiac vascular smooth muscle cell differentiation +is_a: GO:1905064 {is_inferred="true"} ! negative regulation of vascular smooth muscle cell differentiation +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000722 {is_inferred="true"} ! regulation of cardiac vascular smooth muscle cell differentiation + +[Term] +id: GO:2000724 ! positive regulation of cardiac vascular smooth muscle cell differentiation +is_a: GO:1905065 {is_inferred="true"} ! positive regulation of vascular smooth muscle cell differentiation +is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000722 {is_inferred="true"} ! regulation of cardiac vascular smooth muscle cell differentiation + +[Term] +id: GO:2000725 ! regulation of cardiac muscle cell differentiation +is_a: GO:0051153 {is_inferred="true"} ! regulation of striated muscle cell differentiation +is_a: GO:0055024 {is_inferred="true"} ! regulation of cardiac muscle tissue development +is_a: GO:1905207 {is_inferred="true"} ! regulation of cardiocyte differentiation + +[Term] +id: GO:2000726 ! negative regulation of cardiac muscle cell differentiation +is_a: GO:0051154 {is_inferred="true"} ! negative regulation of striated muscle cell differentiation +is_a: GO:0055026 {is_inferred="true"} ! negative regulation of cardiac muscle tissue development +is_a: GO:1905208 {is_inferred="true"} ! negative regulation of cardiocyte differentiation +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation + +[Term] +id: GO:2000727 ! positive regulation of cardiac muscle cell differentiation +is_a: GO:0051155 {is_inferred="true"} ! positive regulation of striated muscle cell differentiation +is_a: GO:0055025 {is_inferred="true"} ! positive regulation of cardiac muscle tissue development +is_a: GO:1905209 {is_inferred="true"} ! positive regulation of cardiocyte differentiation +is_a: GO:2000725 {is_inferred="true"} ! regulation of cardiac muscle cell differentiation + +[Term] id: GO:2000728 ! regulation of mRNA export from nucleus in response to heat stress is_a: GO:0010793 {is_inferred="true"} ! regulation of mRNA export from nucleus is_a: GO:1900034 {is_inferred="true"} ! regulation of cellular response to heat changes in entailments GO Inferences Log