Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2012-01-21.obo; date: 20:01:2012 15:15; CVS revision: 1.2535
- file 2 (new): go-2012-01-28.obo; date: 27:01:2012 13:07; CVS revision: 1.2570

NEW TERMS
=========

ID	name	namespace
GO:0001205	sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription	molecular_function
GO:0001206	sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription	molecular_function
GO:0036095	positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter	biological_process
GO:0036096	3'-5'-exoribonuclease activity involved in pre-miRNA 3'-end processing	molecular_function
GO:0036097	pre-miRNA 3'-end processing	biological_process
GO:0036098	male germ-line stem cell maintenance	biological_process
GO:0036099	female germ-line stem cell maintenance	biological_process
GO:0036100	leukotriene catabolic process	biological_process
GO:0036101	leukotriene B4 catabolic process	biological_process
GO:0036102	leukotriene B4 metabolic process	biological_process
GO:0036103	Kdo2-lipid A metabolic process	biological_process
GO:0036104	Kdo2-lipid A biosynthetic process	biological_process
GO:0036105	peroxisome membrane class-1 targeting sequence binding	molecular_function
GO:0036106	peroxisome membrane class-2 targeting sequence binding	molecular_function
GO:0038066	p38MAPK cascade	biological_process
GO:0038067	MAP kinase activity involved in cell wall biogenesis	molecular_function
GO:0038068	MAP kinase kinase activity involved in cell wall biogenesis	molecular_function
GO:0038069	MAP kinase phosphatase activity involved in regulation of cell wall biogenesis	molecular_function
GO:0038070	MAP kinase kinase kinase activity involved in cell wall biogenesis	molecular_function
GO:0038071	MAP kinase activity involved in conjugation with cellular fusion	molecular_function
GO:0038072	MAP kinase kinase activity involved in conjugation with cellular fusion	molecular_function
GO:0038073	MAP kinase kinase kinase activity involved in conjugation with cellular fusion	molecular_function
GO:0038074	MAP kinase phosphatase activity involved in regulation of conjugation with cellular fusion	molecular_function
GO:0038075	MAP kinase activity involved in innate immune response	molecular_function
GO:0038076	MAP kinase kinase activity involved in innate immune response	molecular_function
GO:0038077	MAP kinase kinase kinase activity involved in innate immune response	molecular_function
GO:0038078	MAP kinase phosphatase activity involved in regulation of innate immune response	molecular_function
GO:0038079	MAP kinase activity involved in osmosensory signaling pathway	molecular_function
GO:0038080	MAP kinase kinase activity involved in osmosensory signaling pathway	molecular_function
GO:0038081	MAP kinase kinase kinase activity involved in osmosensory signaling pathway	molecular_function
GO:0038082	MAP kinase phosphatase activity involved in regulation of osmosensory signaling pathway	molecular_function
GO:0044484	envenomation resulting in fibrinolysis in other organism	biological_process
GO:0044485	envenomation resulting in fibrinogenolysis in other organism	biological_process
GO:0044486	modulation of transmission of nerve impulse in other organism	biological_process
GO:0044487	envenomation resulting in modulation of transmission of nerve impulse in other organism	biological_process
GO:0061413	regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source	biological_process
GO:0061414	positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source	biological_process
GO:0061415	negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source	biological_process
GO:0061416	regulation of transcription from RNA polymerase II promoter in response to salt stress	biological_process
GO:0061417	negative regulation of transcription from RNA polymerase II promoter in response to oxidative stress	biological_process
GO:0061418	regulation of transcription from RNA polymerase II promoter in response to hypoxia	biological_process
GO:0061419	positive regulation of transcription from RNA polymerase II promoter in response to hypoxia	biological_process
GO:0061420	regulation of transcription from RNA polymerase II promoter in response to biotin starvation	biological_process
GO:0061421	positive regulation of transcription by oleic acid	biological_process
GO:0061422	positive regulation of transcription from RNA polymerase II promoter in response to alkalinity	biological_process
GO:0061423	positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter	biological_process
GO:0097222	mitochondrial mRNA polyadenylation	biological_process
GO:0097223	sperm part	cellular_component
GO:0097224	sperm connecting piece	cellular_component
GO:0097225	sperm midpiece	cellular_component
GO:0097226	sperm mitochondrial sheath	cellular_component
GO:0097227	sperm annulus	cellular_component
GO:0097228	sperm principal piece	cellular_component
GO:0097229	sperm end piece	cellular_component
GO:0097230	cell motility in response to potassium ion	biological_process
GO:0097231	cell motility in response to calcium ion	biological_process
GO:0097232	lamellar body membrane	cellular_component
GO:0097233	alveolar lamellar body membrane	cellular_component
GO:0097234	epidermal lamellar body membrane	cellular_component
GO:1900055	regulation of leaf senescence	biological_process
GO:1900056	negative regulation of leaf senescence	biological_process
GO:1900057	positive regulation of leaf senescence	biological_process
GO:1900058	regulation of sulfate assimilation	biological_process
GO:1900059	positive regulation of sulfate assimilation	biological_process
GO:1900060	negative regulation of ceramide biosynthetic process	biological_process
GO:1900061	positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling	biological_process
GO:1900062	regulation of replicative cell aging	biological_process
GO:1900063	regulation of peroxisome organization	biological_process
GO:1900064	positive regulation of peroxisome organization	biological_process
GO:1900065	regulation of ethanol catabolic process	biological_process
GO:1900066	positive regulation of ethanol catabolic process	biological_process
GO:1900067	regulation of cellular response to alkalinity	biological_process
GO:1900068	negative regulation of cellular response to alkalinity	biological_process
GO:1900069	regulation of cellular hyperosmotic salinity response	biological_process
GO:1900070	negative regulation of cellular hyperosmotic salinity response	biological_process
GO:1900071	regulation of sulfite transport	biological_process
GO:1900072	positive regulation of sulfite transport	biological_process
GO:1900073	regulation of neuromuscular synaptic transmission	biological_process
GO:1900074	negative regulation of neuromuscular synaptic transmission	biological_process
GO:1900075	positive regulation of neuromuscular synaptic transmission	biological_process


OBSOLETIONS
===========

None


TERM MERGES
===========

None


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	def	comment	synonym	is_a	intersection_of	relationship	
GO:0000161	C	C		3 A				
GO:0000165	C	C	A	2 D, 3 A				
GO:0000167						2 D, 2 A	1 D, 1 A	
GO:0000168						1 D, 2 A	1 D, 1 A	
GO:0000169						2 D, 2 A	1 D, 1 A	
GO:0000173						2 D, 2 A	1 D, 1 A	
GO:0000185				1 A			1 D	
GO:0000186				1 A			1 D	
GO:0000187					1 A		1 D	
GO:0000196	C	C		3 A				
GO:0000197						1 D, 2 A	1 D, 1 A	
GO:0000198						1 D, 2 A	1 D, 1 A	
GO:0000199						1 D, 2 A	1 D, 1 A	
GO:0000200						1 D, 2 A	1 D, 1 A	
GO:0000436					1 A			
GO:0000437					1 A			
GO:0003151								
GO:0003678							1 A	
GO:0003705		C						
GO:0004518							1 A	
GO:0004706							1 A	
GO:0004707				1 D, 1 A			1 A	
GO:0004708		C		1 D, 1 A			2 A	
GO:0004709		C		1 D, 1 A			2 A	
GO:0004710	C							
GO:0005052				2 A				
GO:0005053				2 A				
GO:0007243		C						
GO:0007254		C		1 A				
GO:0008349				1 A			2 A	
GO:0008545							1 A	
GO:0010227								
GO:0021750							1 A	
GO:0021766				1 A				
GO:0033328				3 A				
GO:0033549				1 A			1 A	
GO:0033572				1 D, 1 A				
GO:0035419						2 D, 2 A	1 D, 1 A	
GO:0035420	C	C		1 A				
GO:0035421						1 D, 2 A	1 D, 1 A	
GO:0035422						2 D, 2 A	1 D, 1 A	
GO:0035423						2 D, 2 A	1 D, 1 A	
GO:0035915					1 D, 1 A			
GO:0038029	C			1 A				
GO:0038030	C			1 A				
GO:0042656							1 A	
GO:0042730		C						
GO:0043408	C	C		4 A				
GO:0043409	C			8 A				
GO:0043410	C			7 A				
GO:0044469					1 A			
GO:0045210				1 D, 1 A				
GO:0045558				1 D, 1 A				
GO:0045559				1 D, 1 A				
GO:0046318					1 D, 1 A			
GO:0048437								
GO:0048438			A	1 A				
GO:0048444								
GO:0048449								
GO:0048450								
GO:0048457								
GO:0048458								
GO:0048459								
GO:0048497								
GO:0050051							1 A	
GO:0051403				2 D, 2 A				
GO:0051673					1 D, 1 A			
GO:0061404					1 A			
GO:0070371		C		2 A				
GO:0070375	C	C		1 D, 3 A				
GO:0070376	C	C		1 D, 1 A				
GO:0070377	C	C		1 D, 1 A				
GO:0070378	C	C		1 D, 1 A				
GO:0071507	C	C		4 A				
GO:0071508						1 D, 2 A	1 D, 1 A	
GO:0071509						2 D, 2 A	1 D, 1 A	
GO:0071510						1 D, 2 A	1 D, 1 A	
GO:0071511						2 D, 2 A	1 D, 1 A	
GO:0072535				1 D, 1 A				
GO:1900007					1 D, 1 A			



OTHER STANZA TYPES
==================

Stanzas Edited
==============

Stanza type	ID	Name
Typedef	negatively_regulates	negatively_regulates
Typedef	positively_regulates	positively_regulates
Typedef	regulates	regulates



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9212	9233	+21
	(9212 defined)	(9233 defined)	
cellular component	2950	2960	+10
	(2950 defined)	(2960 defined)	
biological process	21867	21916	+49
	(21867 defined)	(21916 defined)	

Obsolete	1611	1611	0
	(4.5% of total)	 (4.5% of total)	(0.0%)

Totals	34029	34109	+80 (+0.2%)
	34029 (100.0%) defined	34109 (100.0%) defined	
	35640 inc. obs	35720 inc. obs