Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2012-01-21.obo; date: 20:01:2012 15:15; CVS revision: 1.2535
  • file 2 (new): go-2012-01-28.obo; date: 27:01:2012 13:07; CVS revision: 1.2570

New terms

ID name namespace
GO:0001205 sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription molecular_function
GO:0001206 sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription molecular_function
GO:0036095 positive regulation of invasive growth in response to glucose limitation by positive regulation of transcription from RNA polymerase II promoter biological_process
GO:0036096 3'-5'-exoribonuclease activity involved in pre-miRNA 3'-end processing molecular_function
GO:0036097 pre-miRNA 3'-end processing biological_process
GO:0036098 male germ-line stem cell maintenance biological_process
GO:0036099 female germ-line stem cell maintenance biological_process
GO:0036100 leukotriene catabolic process biological_process
GO:0036101 leukotriene B4 catabolic process biological_process
GO:0036102 leukotriene B4 metabolic process biological_process
GO:0036103 Kdo2-lipid A metabolic process biological_process
GO:0036104 Kdo2-lipid A biosynthetic process biological_process
GO:0036105 peroxisome membrane class-1 targeting sequence binding molecular_function
GO:0036106 peroxisome membrane class-2 targeting sequence binding molecular_function
GO:0038066 p38MAPK cascade biological_process
GO:0038067 MAP kinase activity involved in cell wall biogenesis molecular_function
GO:0038068 MAP kinase kinase activity involved in cell wall biogenesis molecular_function
GO:0038069 MAP kinase phosphatase activity involved in regulation of cell wall biogenesis molecular_function
GO:0038070 MAP kinase kinase kinase activity involved in cell wall biogenesis molecular_function
GO:0038071 MAP kinase activity involved in conjugation with cellular fusion molecular_function
GO:0038072 MAP kinase kinase activity involved in conjugation with cellular fusion molecular_function
GO:0038073 MAP kinase kinase kinase activity involved in conjugation with cellular fusion molecular_function
GO:0038074 MAP kinase phosphatase activity involved in regulation of conjugation with cellular fusion molecular_function
GO:0038075 MAP kinase activity involved in innate immune response molecular_function
GO:0038076 MAP kinase kinase activity involved in innate immune response molecular_function
GO:0038077 MAP kinase kinase kinase activity involved in innate immune response molecular_function
GO:0038078 MAP kinase phosphatase activity involved in regulation of innate immune response molecular_function
GO:0038079 MAP kinase activity involved in osmosensory signaling pathway molecular_function
GO:0038080 MAP kinase kinase activity involved in osmosensory signaling pathway molecular_function
GO:0038081 MAP kinase kinase kinase activity involved in osmosensory signaling pathway molecular_function
GO:0038082 MAP kinase phosphatase activity involved in regulation of osmosensory signaling pathway molecular_function
GO:0044484 envenomation resulting in fibrinolysis in other organism biological_process
GO:0044485 envenomation resulting in fibrinogenolysis in other organism biological_process
GO:0044486 modulation of transmission of nerve impulse in other organism biological_process
GO:0044487 envenomation resulting in modulation of transmission of nerve impulse in other organism biological_process
GO:0061413 regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source biological_process
GO:0061414 positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source biological_process
GO:0061415 negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source biological_process
GO:0061416 regulation of transcription from RNA polymerase II promoter in response to salt stress biological_process
GO:0061417 negative regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological_process
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0061419 positive regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0061420 regulation of transcription from RNA polymerase II promoter in response to biotin starvation biological_process
GO:0061421 positive regulation of transcription by oleic acid biological_process
GO:0061422 positive regulation of transcription from RNA polymerase II promoter in response to alkalinity biological_process
GO:0061423 positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter biological_process
GO:0097222 mitochondrial mRNA polyadenylation biological_process
GO:0097223 sperm part cellular_component
GO:0097224 sperm connecting piece cellular_component
GO:0097225 sperm midpiece cellular_component
GO:0097226 sperm mitochondrial sheath cellular_component
GO:0097227 sperm annulus cellular_component
GO:0097228 sperm principal piece cellular_component
GO:0097229 sperm end piece cellular_component
GO:0097230 cell motility in response to potassium ion biological_process
GO:0097231 cell motility in response to calcium ion biological_process
GO:0097232 lamellar body membrane cellular_component
GO:0097233 alveolar lamellar body membrane cellular_component
GO:0097234 epidermal lamellar body membrane cellular_component
GO:1900055 regulation of leaf senescence biological_process
GO:1900056 negative regulation of leaf senescence biological_process
GO:1900057 positive regulation of leaf senescence biological_process
GO:1900058 regulation of sulfate assimilation biological_process
GO:1900059 positive regulation of sulfate assimilation biological_process
GO:1900060 negative regulation of ceramide biosynthetic process biological_process
GO:1900061 positive regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling biological_process
GO:1900062 regulation of replicative cell aging biological_process
GO:1900063 regulation of peroxisome organization biological_process
GO:1900064 positive regulation of peroxisome organization biological_process
GO:1900065 regulation of ethanol catabolic process biological_process
GO:1900066 positive regulation of ethanol catabolic process biological_process
GO:1900067 regulation of cellular response to alkalinity biological_process
GO:1900068 negative regulation of cellular response to alkalinity biological_process
GO:1900069 regulation of cellular hyperosmotic salinity response biological_process
GO:1900070 negative regulation of cellular hyperosmotic salinity response biological_process
GO:1900071 regulation of sulfite transport biological_process
GO:1900072 positive regulation of sulfite transport biological_process
GO:1900073 regulation of neuromuscular synaptic transmission biological_process
GO:1900074 negative regulation of neuromuscular synaptic transmission biological_process
GO:1900075 positive regulation of neuromuscular synaptic transmission biological_process

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment synonym is_a intersection_of relationship
Term ID name def comment synonym is_a intersection_of relationship
GO:0000161
MAPK cascade involved in osmosensory signaling pathway		 C C 3 A
GO:0000165
MAPK cascade		 C C A 2 D, 3 A
GO:0000167
activation of MAPKKK activity involved in osmosensory signaling pathway		 2 D, 2 A 1 D, 1 A
GO:0000168
activation of MAPKK activity involved in osmosensory signaling pathway		 1 D, 2 A 1 D, 1 A
GO:0000169
activation of MAPK activity involved in osmosensory signaling pathway		 2 D, 2 A 1 D, 1 A
GO:0000173
inactivation of MAPK activity involved in osmosensory signaling pathway		 2 D, 2 A 1 D, 1 A
GO:0000185
activation of MAPKKK activity		 1 A 1 D
GO:0000186
activation of MAPKK activity		 1 A 1 D
GO:0000187
activation of MAPK activity		 1 A 1 D
GO:0000196
MAPK cascade involved in cell wall biogenesis		 C C 3 A
GO:0000197
activation of MAPKKK activity involved in cell wall biogenesis		 1 D, 2 A 1 D, 1 A
GO:0000198
activation of MAPKK activity involved in cell wall biogenesis		 1 D, 2 A 1 D, 1 A
GO:0000199
activation of MAPK activity involved in cell wall biogenesis		 1 D, 2 A 1 D, 1 A
GO:0000200
inactivation of MAPK activity involved in cell wall biogenesis		 1 D, 2 A 1 D, 1 A
GO:0000436
carbon catabolite activation of transcription from RNA polymerase II promoter		 1 A
GO:0000437
carbon catabolite repression of transcription from RNA polymerase II promoter		 1 A
GO:0003151
outflow tract morphogenesis
GO:0003678
DNA helicase activity		 1 A
GO:0003705
sequence-specific distal enhancer binding RNA polymerase II transcription factor activity		 C
GO:0004518
nuclease activity		 1 A
GO:0004706
JUN kinase kinase kinase activity		 1 A
GO:0004707
MAP kinase activity		 1 D, 1 A 1 A
GO:0004708
MAP kinase kinase activity		 C 1 D, 1 A 2 A
GO:0004709
MAP kinase kinase kinase activity		 C 1 D, 1 A 2 A
GO:0004710
MAPK/ERK kinase kinase activity		 C
GO:0005052
peroxisome matrix targeting signal-1 binding		 2 A
GO:0005053
peroxisome matrix targeting signal-2 binding		 2 A
GO:0007243
intracellular protein kinase cascade		 C
GO:0007254
JNK cascade		 C 1 A
GO:0008349
MAP kinase kinase kinase kinase activity		 1 A 2 A
GO:0008545
JUN kinase kinase activity		 1 A
GO:0010227
floral organ abscission
GO:0021750
vestibular nucleus development		 1 A
GO:0021766
hippocampus development		 1 A
GO:0033328
peroxisome membrane targeting sequence binding		 3 A
GO:0033549
MAP kinase phosphatase activity		 1 A 1 A
GO:0033572
transferrin transport		 1 D, 1 A
GO:0035419
activation of MAPK activity involved in innate immune response		 2 D, 2 A 1 D, 1 A
GO:0035420
MAPK cascade involved in innate immune response		 C C 1 A
GO:0035421
activation of MAPKK activity involved in innate immune response		 1 D, 2 A 1 D, 1 A
GO:0035422
activation of MAPKKK activity involved in innate immune response		 2 D, 2 A 1 D, 1 A
GO:0035423
inactivation of MAPK activity involved in innate immune response		 2 D, 2 A 1 D, 1 A
GO:0035915
pore formation in membrane of other organism		 1 D, 1 A
GO:0038029
epidermal growth factor receptor signaling pathway via MAPK cascade		 C 1 A
GO:0038030
non-canonical Wnt receptor signaling pathway via MAPK cascade		 C 1 A
GO:0042656
JUN kinase kinase kinase kinase activity		 1 A
GO:0042730
fibrinolysis		 C
GO:0043408
regulation of MAPK cascade		 C C 4 A
GO:0043409
negative regulation of MAPK cascade		 C 8 A
GO:0043410
positive regulation of MAPK cascade		 C 7 A
GO:0044469
envenomation resulting in positive regulation of blood coagulation in other organism		 1 A
GO:0045210
FasL biosynthetic process		 1 D, 1 A
GO:0045558
TRAIL receptor 1 biosynthetic process		 1 D, 1 A
GO:0045559
TRAIL receptor 2 biosynthetic process		 1 D, 1 A
GO:0046318
negative regulation of glucosylceramide biosynthetic process		 1 D, 1 A
GO:0048437
floral organ development
GO:0048438
floral whorl development		 A 1 A
GO:0048444
floral organ morphogenesis
GO:0048449
floral organ formation
GO:0048450
floral organ structural organization
GO:0048457
floral whorl morphogenesis
GO:0048458
floral whorl formation
GO:0048459
floral whorl structural organization
GO:0048497
maintenance of floral organ identity
GO:0050051
leukotriene-B4 20-monooxygenase activity		 1 A
GO:0051403
stress-activated MAPK cascade		 2 D, 2 A
GO:0051673
membrane disruption in other organism		 1 D, 1 A
GO:0061404
positive regulation of transcription from RNA polymerase II promoter in response to increased salt		 1 A
GO:0070371
ERK1 and ERK2 cascade		 C 2 A
GO:0070375
ERK5 cascade		 C C 1 D, 3 A
GO:0070376
regulation of ERK5 cascade		 C C 1 D, 1 A
GO:0070377
negative regulation of ERK5 cascade		 C C 1 D, 1 A
GO:0070378
positive regulation of ERK5 cascade		 C C 1 D, 1 A
GO:0071507
MAPK cascade involved in conjugation with cellular fusion		 C C 4 A
GO:0071508
activation of MAPK activity involved in conjugation with cellular fusion		 1 D, 2 A 1 D, 1 A
GO:0071509
activation of MAPKK activity involved in conjugation with cellular fusion		 2 D, 2 A 1 D, 1 A
GO:0071510
activation of MAPKKK activity involved in conjugation with cellular fusion		 1 D, 2 A 1 D, 1 A
GO:0071511
inactivation of MAPK activity involved in conjugation with cellular fusion		 2 D, 2 A 1 D, 1 A
GO:0072535
tumor necrosis factor (ligand) superfamily member 11 production		 1 D, 1 A
GO:1900007
regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging		 1 D, 1 A

Other Stanza Types

Stanzas Edited

Stanza type ID name
Typedef negatively_regulates negatively_regulates
Typedef positively_regulates positively_regulates
Typedef regulates regulates

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9212
9212 (100.0%) defined 		9233
9233 (100.0%) defined 		+21
cellular component 2950
2950 (100.0%) defined 		2960
2960 (100.0%) defined 		+10
biological process 21867
21867 (100.0%) defined 		21916
21916 (100.0%) defined 		+49
Obsolete 1611
(4.5% of total)		 1611
(4.5% of total)		 0 (0.0%)
Totals 34029
34029 (100.0%) defined
35640 inc. obsoletes 		34109
34109 (100.0%) defined
35720 inc. obsoletes 		+80 (+0.2%)

Ontology report info