Gene Ontology: Ontology Comparison Report

Files used:

file 1 (old): go-2011-12-17.obo; date: 15:12:2011 15:48; CVS revision: 1.2455
file 2 (new): go-2011-12-24.obo; date: 23:12:2011 10:41; CVS revision: 1.2470

New terms
Obsoletions
Term merges
Term changes
File Stats

New terms

ID	name	namespace
GO:0002199	sperm protein complex	cellular_component
GO:0036072	direct ossification	biological_process
GO:0036073	perichondral ossification	biological_process
GO:0036074	metaplastic ossification	biological_process
GO:0036075	replacement ossification	biological_process
GO:0036076	ligamentous ossification	biological_process
GO:0036077	intratendonous ossification	biological_process
GO:0036078	minus-end specific microtubule depolymerization	biological_process
GO:0036079	purine nucleotide-sugar transport	biological_process
GO:0036080	purine nucleotide-sugar transmembrane transporter activity	molecular_function
GO:0036081	extracellular ammonia-gated ion channel activity	molecular_function
GO:0036082	extracellular phenylacetaldehyde-gated ion channel activity	molecular_function
GO:0036083	positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter	biological_process
GO:0036084	GDP-fucose import into endoplasmic reticulum lumen	biological_process
GO:0036085	GDP-fucose import into Golgi lumen	biological_process
GO:0038056	negative regulation of BMP signaling pathway by negative regulation of BMP secretion	biological_process
GO:0039528	cytoplasmic pattern recognition receptor signaling pathway in response to virus	biological_process
GO:0039529	RIG-I signaling pathway	biological_process
GO:0039530	MDA-5 signaling pathway	biological_process
GO:0044395	protein targeting to vacuolar membrane	biological_process
GO:0044396	actin cortical patch organization	biological_process
GO:0044397	actin cortical patch internalization	biological_process
GO:0044398	envenomation resulting in induction of edema in other organism	biological_process
GO:0097202	activation of cysteine-type endopeptidase activity	biological_process
GO:0097203	phagocytic cup lip	cellular_component
GO:0097204	phagocytic cup base	cellular_component
GO:1900000	regulation of anthocyanin catabolic process	biological_process
GO:1900001	negative regulation of anthocyanin catabolic process	biological_process
GO:1900002	positive regulation of anthocyanin catabolic process	biological_process

Obsoletions

None

Term merges

Old ID	Old name	Merged into	Merged term name
GO:0080087	callose binding	GO:0001872	(1->3)-beta-D-glucan binding

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID	name	alt_id	def	comment	synonym	xref	is_a	intersection_of	relationship
Term ID	name	alt_id	def	comment	synonym	xref	is_a	intersection_of	relationship
GO:0000048 peptidyltransferase activity						1 D
GO:0000064 L-ornithine transmembrane transporter activity						1 A
GO:0000096 sulfur amino acid metabolic process						20 A
GO:0000098 sulfur amino acid catabolic process						1 A
GO:0000149 SNARE binding						7 D
GO:0000170 sphingosine hydroxylase activity						1 A
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay						1 A
GO:0000236 mitotic prometaphase						3 A
GO:0000715 nucleotide-excision repair, DNA damage recognition						1 A
GO:0000723 telomere maintenance						1 D, 1 A
GO:0000724 double-strand break repair via homologous recombination						8 A
GO:0001609 G-protein coupled adenosine receptor activity						10 D, 10 A
GO:0001634 pituitary adenylate cyclase-activating polypeptide receptor activity						10 D, 10 A
GO:0001639 PLC activating G-protein coupled glutamate receptor activity	C				1 A				1 A
GO:0001640 adenylate cyclase inhibiting G-protein coupled glutamate receptor activity	C				1 A
GO:0001649 osteoblast differentiation			C
GO:0001694 histamine biosynthetic process						1 A
GO:0001729 ceramide kinase activity						1 A
GO:0001733 galactosylceramide sulfotransferase activity						1 A
GO:0001872 (1->3)-beta-D-glucan binding		1 A			1 A
GO:0001957 intramembranous ossification			C	A	1 A		1 D, 1 A
GO:0001958 endochondral ossification			C				1 D, 1 A
GO:0002576 platelet degranulation						1 A
GO:0003678 DNA helicase activity						1 A
GO:0003700 sequence-specific DNA binding transcription factor activity						10 D
GO:0003720 telomerase activity						2 A
GO:0003723 RNA binding						1 D
GO:0003829 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity						2 A
GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity						2 A
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity						1 A
GO:0003870 5-aminolevulinate synthase activity						1 A
GO:0003872 6-phosphofructokinase activity						1 A
GO:0003873 6-phosphofructo-2-kinase activity						1 A
GO:0003878 ATP citrate synthase activity						17 A
GO:0003887 DNA-directed DNA polymerase activity						2 D
GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity						1 D, 1 A
GO:0003909 DNA ligase activity						1 A
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity						1 A
GO:0003924 GTPase activity						1 D
GO:0003937 IMP cyclohydrolase activity						1 A
GO:0003938 IMP dehydrogenase activity						1 A
GO:0003990 acetylcholinesterase activity						6 A
GO:0003994 aconitate hydratase activity						2 A
GO:0004012 phospholipid-translocating ATPase activity						1 A
GO:0004014 adenosylmethionine decarboxylase activity						1 D
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity						1 A
GO:0004019 adenylosuccinate synthase activity						2 A
GO:0004044 amidophosphoribosyltransferase activity						1 A
GO:0004053 arginase activity						1 A
GO:0004055 argininosuccinate synthase activity						1 A
GO:0004056 argininosuccinate lyase activity						1 A
GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity						4 A
GO:0004070 aspartate carbamoyltransferase activity						1 A
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity						1 A
GO:0004098 cerebroside-sulfatase activity						1 A
GO:0004102 choline O-acetyltransferase activity						12 D, 12 A
GO:0004104 cholinesterase activity						6 D
GO:0004108 citrate (Si)-synthase activity						1 A
GO:0004109 coproporphyrinogen oxidase activity						1 A
GO:0004122 cystathionine beta-synthase activity						1 A
GO:0004123 cystathionine gamma-lyase activity						1 A
GO:0004140 dephospho-CoA kinase activity						1 D
GO:0004143 diacylglycerol kinase activity						1 D, 1 A
GO:0004146 dihydrofolate reductase activity						1 A
GO:0004151 dihydroorotase activity						1 A
GO:0004152 dihydroorotate dehydrogenase activity						1 A
GO:0004175 endopeptidase activity						1 A
GO:0004197 cysteine-type endopeptidase activity						11 D
GO:0004222 metalloendopeptidase activity						2 A
GO:0004252 serine-type endopeptidase activity						8 D, 14 A
GO:0004308 exo-alpha-sialidase activity						3 A
GO:0004322 ferroxidase activity						1 A
GO:0004325 ferrochelatase activity						1 A
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity						1 A
GO:0004332 fructose-bisphosphate aldolase activity						2 A
GO:0004333 fumarate hydratase activity						2 A
GO:0004336 galactosylceramidase activity						1 A
GO:0004340 glucokinase activity						1 A
GO:0004346 glucose-6-phosphatase activity						1 A
GO:0004347 glucose-6-phosphate isomerase activity						2 A
GO:0004348 glucosylceramidase activity						3 A
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity						2 A
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity						1 A
GO:0004398 histidine decarboxylase activity						1 A
GO:0004418 hydroxymethylbilane synthase activity						1 A
GO:0004435 phosphatidylinositol phospholipase C activity						1 D, 1 A
GO:0004449 isocitrate dehydrogenase (NAD+) activity						1 A
GO:0004459 L-lactate dehydrogenase activity						2 A
GO:0004519 endonuclease activity						2 A
GO:0004557 alpha-galactosidase activity						1 A
GO:0004558 alpha-glucosidase activity						8 D
GO:0004563 beta-N-acetylhexosaminidase activity						2 A
GO:0004565 beta-galactosidase activity						2 A
GO:0004583 dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity						1 A
GO:0004585 ornithine carbamoyltransferase activity						1 A
GO:0004588 orotate phosphoribosyltransferase activity						1 A
GO:0004590 orotidine-5'-phosphate decarboxylase activity						1 A
GO:0004595 pantetheine-phosphate adenylyltransferase activity						1 D
GO:0004601 peroxidase activity						5 D
GO:0004602 glutathione peroxidase activity						1 D
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity						2 A
GO:0004617 phosphoglycerate dehydrogenase activity						1 A
GO:0004618 phosphoglycerate kinase activity						2 A
GO:0004619 phosphoglycerate mutase activity						2 A
GO:0004634 phosphopyruvate hydratase activity						2 A
GO:0004637 phosphoribosylamine-glycine ligase activity						1 A
GO:0004638 phosphoribosylaminoimidazole carboxylase activity						1 A
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity						1 A
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity						1 A
GO:0004642 phosphoribosylformylglycinamidine synthase activity						1 A
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity						1 A
GO:0004644 phosphoribosylglycinamide formyltransferase activity						1 A
GO:0004647 phosphoserine phosphatase activity						1 A
GO:0004648 O-phospho-L-serine:2-oxoglutarate aminotransferase activity						1 A
GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity						1 A
GO:0004655 porphobilinogen synthase activity						1 A
GO:0004672 protein kinase activity						5 A
GO:0004674 protein serine/threonine kinase activity						1 D, 8 A
GO:0004677 DNA-dependent protein kinase activity						1 A
GO:0004679 AMP-activated protein kinase activity						12 A
GO:0004683 calmodulin-dependent protein kinase activity						1 D, 1 A
GO:0004691 cAMP-dependent protein kinase activity						12 D
GO:0004707 MAP kinase activity						1 A
GO:0004713 protein tyrosine kinase activity						13 D, 34 A
GO:0004714 transmembrane receptor protein tyrosine kinase activity						19 D, 19 A
GO:0004715 non-membrane spanning protein tyrosine kinase activity						4 A
GO:0004722 protein serine/threonine phosphatase activity						1 D, 1 A
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity						1 A
GO:0004731 purine-nucleoside phosphorylase activity						1 A
GO:0004736 pyruvate carboxylase activity						1 A
GO:0004743 pyruvate kinase activity						1 A
GO:0004750 ribulose-phosphate 3-epimerase activity						2 D
GO:0004758 serine C-palmitoyltransferase activity						1 A
GO:0004767 sphingomyelin phosphodiesterase activity						4 A
GO:0004773 steryl-sulfatase activity						1 A
GO:0004775 succinate-CoA ligase (ADP-forming) activity						2 A
GO:0004776 succinate-CoA ligase (GDP-forming) activity						2 A
GO:0004782 sulfinoalanine decarboxylase activity						1 A
GO:0004807 triose-phosphate isomerase activity						2 A
GO:0004842 ubiquitin-protein ligase activity						17 A
GO:0004843 ubiquitin-specific protease activity						2 A
GO:0004844 uracil DNA N-glycosylase activity						2 A
GO:0004852 uroporphyrinogen-III synthase activity						1 A
GO:0004853 uroporphyrinogen decarboxylase activity						2 A
GO:0004854 xanthine dehydrogenase activity						1 A
GO:0004890 GABA-A receptor activity					1 A
GO:0004965 G-protein coupled GABA receptor activity	C		C		2 A		1 D, 1 A
GO:0004970 ionotropic glutamate receptor activity									1 A
GO:0005047 signal recognition particle binding						13 D
GO:0005048 signal sequence binding						15 D
GO:0005085 guanyl-nucleotide exchange factor activity						2 D, 1 A
GO:0005088 Ras guanyl-nucleotide exchange factor activity						8 A
GO:0005089 Rho guanyl-nucleotide exchange factor activity						1 D
GO:0005262 calcium channel activity						12 D
GO:0005310 dicarboxylic acid transmembrane transporter activity						2 A
GO:0005355 glucose transmembrane transporter activity						2 A
GO:0005367 myo-inositol:sodium symporter activity						1 D
GO:0005487 nucleocytoplasmic transporter activity						1 A
GO:0005515 protein binding						17 D
GO:0005975 carbohydrate metabolic process						1 A
GO:0006090 pyruvate metabolic process						1 A
GO:0006094 gluconeogenesis						1 A
GO:0006096 glycolysis						1 A
GO:0006099 tricarboxylic acid cycle						1 A
GO:0006144 purine base metabolic process						1 A
GO:0006167 AMP biosynthetic process						1 A
GO:0006177 GMP biosynthetic process						1 A
GO:0006189 'de novo' IMP biosynthetic process						1 A
GO:0006206 pyrimidine base metabolic process						1 A
GO:0006222 UMP biosynthetic process						1 A
GO:0006281 DNA repair						2 A
GO:0006284 base-excision repair						2 A
GO:0006285 base-excision repair, AP site formation						1 A
GO:0006302 double-strand break repair						1 A
GO:0006303 double-strand break repair via nonhomologous end joining						1 A
GO:0006307 DNA dealkylation involved in DNA repair						1 D, 1 A
GO:0006383 transcription from RNA polymerase III promoter						4 D, 3 A
GO:0006393 termination of mitochondrial transcription						1 D
GO:0006406 mRNA export from nucleus						2 D
GO:0006415 translational termination						3 D
GO:0006471 protein ADP-ribosylation						1 A
GO:0006499 N-terminal protein myristoylation						1 A
GO:0006520 cellular amino acid metabolic process						1 A
GO:0006525 arginine metabolic process						1 A
GO:0006564 L-serine biosynthetic process						1 A
GO:0006590 thyroid hormone generation						14 A
GO:0006614 SRP-dependent cotranslational protein targeting to membrane						17 A
GO:0006629 lipid metabolic process						1 A
GO:0006665 sphingolipid metabolic process						1 A
GO:0006687 glycosphingolipid metabolic process						1 A
GO:0006690 icosanoid metabolic process						14 A
GO:0006714 sesquiterpenoid metabolic process							1 D
GO:0006766 vitamin metabolic process						13 A
GO:0006771 riboflavin metabolic process						18 A
GO:0006783 heme biosynthetic process						1 A
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process	C		C	A	2 A		1 A	2 A
GO:0006987 activation of signaling protein activity involved in unfolded protein response						40 A
GO:0007004 telomere maintenance via telomerase						1 A
GO:0007062 sister chromatid cohesion						11 D, 14 A
GO:0007091 mitotic metaphase/anaphase transition						1 A
GO:0007092 activation of mitotic anaphase-promoting complex activity						13 D, 13 A
GO:0007196 inhibition of adenylate cyclase activity by G-protein coupled glutamate receptor signaling pathway	C				1 A
GO:0007206 activation of phospholipase C activity by G-protein coupled glutamate receptor signaling pathway	C				1 A
GO:0007216 G-protein coupled glutamate receptor signaling pathway	C				1 A
GO:0007596 blood coagulation						1 A
GO:0008028 monocarboxylic acid transmembrane transporter activity						10 A
GO:0008120 ceramide glucosyltransferase activity						1 A
GO:0008177 succinate dehydrogenase (ubiquinone) activity						2 A
GO:0008236 serine-type peptidase activity						1 A
GO:0008321 Ral guanyl-nucleotide exchange factor activity						10 D, 10 A
GO:0008373 sialyltransferase activity						1 A
GO:0008378 galactosyltransferase activity						1 A
GO:0008481 sphinganine kinase activity						1 A
GO:0008482 sulfite oxidase activity						1 A
GO:0008499 UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity						1 A
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c	C		C		1 A
GO:0008815 citrate (pro-3S)-lyase activity						17 D
GO:0015010 tetrahydrocorphin metabolic process							1 D, 1 A
GO:0015011 nickel-tetrapyrrole coenzyme metabolic process							1 D, 1 A
GO:0015129 lactate transmembrane transporter activity						2 A
GO:0015139 alpha-ketoglutarate transmembrane transporter activity						1 A
GO:0015142 tricarboxylic acid transmembrane transporter activity						1 A
GO:0015152 glucose-6-phosphate transmembrane transporter activity						1 A
GO:0015171 amino acid transmembrane transporter activity						1 D
GO:0015172 acidic amino acid transmembrane transporter activity						1 A
GO:0015220 choline transmembrane transporter activity						1 D, 1 A
GO:0015250 water channel activity						40 A
GO:0015254 glycerol channel activity						28 A
GO:0015276 ligand-gated ion channel activity					1 D, 1 A
GO:0015367 oxoglutarate:malate antiporter activity						1 A
GO:0015432 bile acid-exporting ATPase activity						8 A
GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism						11 A
GO:0015758 glucose transport						1 A
GO:0015783 GDP-fucose transport							1 D, 1 A
GO:0015784 GDP-mannose transport							1 D, 1 A
GO:0015793 glycerol transport						14 A
GO:0016106 sesquiterpenoid biosynthetic process							1 D
GO:0016107 sesquiterpenoid catabolic process							1 D
GO:0016233 telomere capping						2 D
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity						1 A
GO:0016266 O-glycan processing						2 A
GO:0016301 kinase activity						60 D, 68 A
GO:0016746 transferase activity, transferring acyl groups						27 D
GO:0016783 sulfurtransferase activity						1 A
GO:0016846 carbon-sulfur lyase activity						1 A
GO:0016874 ligase activity						2 A
GO:0017040 ceramidase activity						3 A
GO:0017172 cysteine dioxygenase activity						1 A
GO:0019104 DNA N-glycosylase activity						4 A
GO:0019107 myristoyltransferase activity						1 A
GO:0019346 transsulfuration						1 A
GO:0019448 L-cysteine catabolic process						1 A
GO:0019626 short-chain fatty acid catabolic process						14 A
GO:0019785 ISG15-specific protease activity						1 A
GO:0019852 L-ascorbic acid metabolic process						17 A
GO:0019985 translesion synthesis						6 A
GO:0022803 passive transmembrane transporter activity						10 A
GO:0022824 transmitter-gated ion channel activity					1 A
GO:0030060 L-malate dehydrogenase activity						3 A
GO:0030148 sphingolipid biosynthetic process						20 A
GO:0030168 platelet activation						1 A
GO:0030290 sphingolipid activator protein activity						1 A
GO:0030514 negative regulation of BMP signaling pathway			C
GO:0030968 endoplasmic reticulum unfolded protein response						17 A
GO:0031795 G-protein coupled GABA receptor binding	C		C		1 A		1 A
GO:0031806 G-protein coupled histamine receptor binding	C		C		1 A
GO:0031811 G-protein coupled nucleotide receptor binding	C		C		1 A
GO:0031821 G-protein coupled serotonin receptor binding	C				1 A
GO:0034061 DNA polymerase activity						6 A
GO:0034339 regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor						11 D
GO:0034418 urate biosynthetic process						1 A
GO:0034602 oxoglutarate dehydrogenase (NAD+) activity						1 A
GO:0034604 pyruvate dehydrogenase (NAD+) activity						1 A
GO:0035256 G-protein coupled glutamate receptor binding	C		C		1 A
GO:0036042 long-chain fatty acyl-CoA binding	C
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity						1 A
GO:0042168 heme metabolic process						1 A
GO:0042284 sphingolipid delta-4 desaturase activity						1 A
GO:0042423 catecholamine biosynthetic process						15 A
GO:0042626 ATPase activity, coupled to transmembrane movement of substances						13 A
GO:0043130 ubiquitin binding						1 A
GO:0043687 post-translational protein modification						17 D, 17 A
GO:0043734 DNA-N1-methyladenine dioxygenase activity						1 A
GO:0043931 ossification involved in bone maturation					1 A
GO:0043932 ossification involved in bone remodeling			C
GO:0044281 small molecule metabolic process						1 A
GO:0044358 envenomation resulting in hemorrhagic damage to other organism			C
GO:0044365 envenomation resulting in modulation of platelet aggregation in other organism			C
GO:0044387 negative regulation of protein kinase activity by regulation of protein phosphorylation								2 D
GO:0044392 peptidyl-lysine malonylation							1 A
GO:0045008 depyrimidination						1 A
GO:0046219 indolalkylamine biosynthetic process						16 A
GO:0046788 egress of virus within host cell						1 A
GO:0046796 viral genome transport in host cell						1 A
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity						1 A
GO:0047150 betaine-homocysteine S-methyltransferase activity						1 A
GO:0047290 (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity						1 A
GO:0047560 3-dehydrosphinganine reductase activity						1 A
GO:0047822 hypotaurine dehydrogenase activity						1 A
GO:0047982 homocysteine desulfhydrase activity						1 A
GO:0050291 sphingosine N-acyltransferase activity						1 A
GO:0050313 sulfur dioxygenase activity						1 A
GO:0050483 IMP 5'-nucleotidase activity						1 A
GO:0050772 positive regulation of axonogenesis						2 D
GO:0050833 pyruvate transmembrane transporter activity						1 A
GO:0051033 RNA transmembrane transporter activity						1 D
GO:0051480 cytosolic calcium ion homeostasis								2 D
GO:0052834 inositol monophosphate phosphatase activity						1 D
GO:0055086 nucleobase-containing small molecule metabolic process						1 A
GO:0070221 sulfide oxidation, using sulfide:quinone oxidoreductase						1 A
GO:0070224 sulfide:quinone oxidoreductase activity						1 A
GO:0070626 (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity						1 A
GO:0070674 hypoxanthine dehydrogenase activity						1 A
GO:0070774 phytoceramidase activity						1 A
GO:0080146 L-cysteine desulfhydrase activity						2 A
GO:0097055 agmatine biosynthetic process						16 A
GO:2001266 Roundabout signaling pathway involved in axon guidance
GO:2001282 negative regulation of muscle cell chemotaxis toward tendon cell			C		1 A
GO:2001283 Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell			C

File Stats

Term counts for the old and new files
Ontology	Old file	New file	Change
molecular function	9201 9201 (100.0%) defined	9203 9203 (100.0%) defined	+2
cellular component	2938 2938 (100.0%) defined	2941 2941 (100.0%) defined	+3
biological process	21730 21730 (100.0%) defined	21753 21753 (100.0%) defined	+23
Obsolete	1609 (4.5% of total)	1609 (4.5% of total)	0 (0.0%)
Totals	33869 33869 (100.0%) defined 35478 inc. obsoletes	33897 33897 (100.0%) defined 35506 inc. obsoletes	+28 (+0.1%)

Ontology report info