Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2011-12-03.obo; date: 02:12:2011 16:46; CVS revision: 1.2418
  • file 2 (new): go-2011-12-10.obo; date: 09:12:2011 12:27; CVS revision: 1.2428

New terms

ID name namespace
GO:0036043 microspike cellular_component
GO:0044377 RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending molecular_function
GO:0044378 non-sequence-specific DNA binding, bending molecular_function
GO:0044379 protein localization to actin cortical patch biological_process
GO:0044381 glucose import in response to insulin stimulus biological_process
GO:0052839 inositol diphosphate tetrakisphosphate kinase activity molecular_function
GO:0052840 inositol diphosphate tetrakisphosphate diphosphatase activity molecular_function
GO:0052841 inositol bisdiphosphate tetrakisphosphate diphosphatase activity molecular_function
GO:0052842 inositol diphosphate pentakisphosphate diphosphatase activity molecular_function
GO:0052843 inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity molecular_function
GO:0052844 inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity molecular_function
GO:0052845 inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity molecular_function
GO:0052846 inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity molecular_function
GO:0052847 inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity molecular_function
GO:0052848 inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity molecular_function
GO:0052849 NADPH-dependent curcurmin reductase activity molecular_function
GO:0052850 NADPH-dependent dihydrocurcurmin reductase activity molecular_function
GO:0052851 ferric-chelate reductase (NADPH) activity molecular_function
GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity molecular_function
GO:0052853 long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity molecular_function
GO:0052854 medium-chain-(S)-2-hydroxy-acid oxidase activity molecular_function
GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity molecular_function
GO:0052856 NADHX epimerase activity molecular_function
GO:0052857 NADPHX epimerase activity molecular_function
GO:0052858 peptidyl-lysine N-acetyltransferase activity molecular_function
GO:0052859 glucan endo-1,4-beta-glucosidase activity molecular_function
GO:0052860 2'-deoxymugineic-acid 3-dioxygenase activity molecular_function
GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group molecular_function
GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group molecular_function
GO:0052863 1-deoxy-D-xylulose 5-phosphate metabolic process biological_process
GO:0052864 1-deoxy-D-xylulose 5-phosphate catabolic process biological_process
GO:0052865 1-deoxy-D-xylulose 5-phosphate biosynthetic process biological_process
GO:0072694 cell cycle arrest in response to caffeine biological_process
GO:0097198 histone H3-K36 trimethylation biological_process

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment subset synonym xref is_a relationship is_obsolete replaced_by consider
Term ID name def comment subset synonym xref is_a relationship is_obsolete replaced_by consider
GO:0000038
very long chain fatty acid metabolic process		 C
GO:0000908
taurine dioxygenase activity		 1 D, 1 A
GO:0001503
ossification		 A
GO:0001692
histamine metabolic process		 1 D, 1 A
GO:0001695
histamine catabolic process		 1 A
GO:0003706
ligand-regulated transcription factor activity		 C A 1 D A 2 A
GO:0003708
retinoic acid receptor activity		 C
GO:0003832
beta-alanyl-dopamine hydrolase activity		 C
GO:0004402
histone acetyltransferase activity		 1 D, 1 A
GO:0005040
decoy death receptor activity		 1 D
GO:0008486
diphosphoinositol-polyphosphate diphosphatase activity		 3 D, 3 A 1 A
GO:0008810
cellulase activity		 5 D, 5 A
GO:0008823
cupric reductase activity		 C 1 A
GO:0008849
enterochelin esterase activity		 C 1 A
GO:0016706
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors		 C 1 A
GO:0017099
very-long-chain-acyl-CoA dehydrogenase activity		 C C
GO:0018602
2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity		 C
GO:0019797
procollagen-proline 3-dioxygenase activity		 1 D, 1 A
GO:0030035
microspike assembly		 C A
GO:0030416
methylamine metabolic process		 C
GO:0030745
dimethylhistidine N-methyltransferase activity		 1 D 1 D
GO:0031217
glucan 1,4-beta-glucosidase activity		 3 D, 3 A
GO:0031543
peptidyl-proline dioxygenase activity		 C
GO:0031964
beta-alanyl-histamine hydrolase activity		 C
GO:0033758
clavaminate synthase activity		 1 A
GO:0033761
mugineic-acid 3-dioxygenase activity		 C 3 A
GO:0033946
xyloglucan-specific endo-beta-1,4-glucanase activity		 1 D, 1 A
GO:0034339
regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		 C C 1 D A 4 A
GO:0043734
DNA-N1-methyladenine dioxygenase activity		 C 1 A
GO:0044374
sequence-specific DNA binding, bending		 1 A
GO:0045330
aspartyl esterase activity		 1 A
GO:0045544
gibberellin 20-oxidase activity		 1 A
GO:0046847
filopodium assembly		 C 1 D, 1 A
GO:0047079
deoxyuridine 1'-dioxygenase activity		 C 2 D, 2 A
GO:0047080
deoxyuridine 2'-dioxygenase activity		 C 6 D, 6 A
GO:0047453
ATP-dependent NAD(P)H-hydrate dehydratase activity		 1 D, 1 A
GO:0050353
trimethyllysine dioxygenase activity		 C
GO:0050590
desacetoxyvindoline 4-hydroxylase activity		 2 A
GO:0052704
ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine		 2 A
GO:0052705
methylhistidine N-methyltransferase activity		 1 D
GO:0052706
histidine N-methyltransferase activity		 1 D
GO:0052707
N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine		 1 D, 3 A
GO:0052711
ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine		 1 D
GO:0052773
diacetylchitobiose deacetylase activity		 1 D
GO:0052774
glucosyl-N-acetylglucosamine glucosaminidase activity		 1 D
GO:0052776
diacetylchitobiose catabolic process to glucosamine and acetate		 3 A
GO:0052790
chitooligosaccharide deacetylase activity		 1 D
GO:0052803
imidazole-containing compound metabolic process		 C
GO:0052805
imidazole-containing compound catabolic process		 C
GO:0072500
negative regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		 C A 1 D A 4 A
GO:0080182
histone H3-K4 trimethylation		 C
GO:2000190
negative regulation of regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		 1 D 4 A

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9168
9168 (100.0%) defined 		9193
9193 (100.0%) defined 		+25
cellular component 2926
2926 (100.0%) defined 		2927
2927 (100.0%) defined 		+1
biological process 21659
21659 (100.0%) defined 		21664
21664 (100.0%) defined 		+5
Obsolete 1603
(4.5% of total)		 1606
(4.5% of total)		 +3 (+0.2%)
Totals 33753
33753 (100.0%) defined
35356 inc. obsoletes 		33784
33784 (100.0%) defined
35390 inc. obsoletes 		+34 (+0.1%)

Ontology report info