Gene Ontology: Ontology Comparison Report

Files used:

file 1 (old): go-2011-11-19.obo; date: 18:11:2011 17:55; CVS revision: 1.2388
file 2 (new): go-2011-11-26.obo; date: 24:11:2011 22:03; CVS revision: 1.2403

New terms
Obsoletions
Term merges
Term changes
File Stats

New terms

ID	name	namespace
GO:0001196	regulation of mating-type specific transcription from RNA polymerase II promoter	biological_process
GO:0001197	positive regulation of mating-type specific transcription from RNA polymerase II promoter	biological_process
GO:0001198	negative regulation of mating-type specific transcription from RNA polymerase II promoter	biological_process
GO:0001199	metal ion regulated sequence-specific DNA binding RNA polymerase transcription factor activity	molecular_function
GO:0001200	metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0001201	metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0001202	copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0001203	zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity	molecular_function
GO:0001204	metal ion regulated bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity	molecular_function
GO:0036038	tectonic complex	cellular_component
GO:0036039	curcumin metabolic process	biological_process
GO:0036040	curcumin catabolic process	biological_process
GO:0036041	long-chain fatty acid binding	molecular_function
GO:0036042	long-chain fatty acyl-CoA	molecular_function
GO:0097186	amelogenesis	biological_process
GO:0097187	dentinogenesis	biological_process
GO:0097188	dentin mineralization	biological_process
GO:0097189	apoptotic body	cellular_component
GO:0097190	apoptotic signaling pathway	biological_process
GO:0097191	extrinsic apoptotic signaling pathway	biological_process
GO:0097192	extrinsic apoptotic signaling pathway in absence of ligand	biological_process
GO:0097193	intrinsic apoptotic signaling pathway	biological_process
GO:0097194	execution phase of apoptosis	biological_process

Obsoletions

None

Term merges

Old ID	Old name	Merged into	Merged term name
GO:0034619	cellular chaperone-mediated protein complex assembly	GO:0051131	chaperone-mediated protein complex assembly

Term changes

Changes in term-related data
File 1 (18:11:2011 17:55, 1.2388)	File 2 (24:11:2011 22:03, 1.2403)

GO:0006351 : transcription, DNA-dependent
	subset goslim_pombe

GO:0006366 : transcription from RNA polymerase II promoter
subset ~~goslim_pombe~~

GO:0006636 : unsaturated fatty acid biosynthetic process
	synonym "polyunsaturated fatty acid biosynthesis" NARROW [GOC:yaf, MetaCyc:PWY-762]

GO:0006915 : apoptotic process
name ~~apoptosis~~ def A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.	name apoptotic process def A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathways) which typically lead to rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. The process ends when the cell has died. The process is divided into a signaling pathway phase and into an execution phase, which is triggered by the former. synonym "apoptosis" NARROW [] "cell suicide" BROAD [] "cellular suicide" BROAD []

GO:0006915 : apoptotic process

name
~~apoptosis~~
def
A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

name
apoptotic process
def
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathways) which typically lead to rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. The process ends when the cell has died. The process is divided into a signaling pathway phase and into an execution phase, which is triggered by the former.
synonym
"apoptosis" NARROW []
"cell suicide" BROAD []
"cellular suicide" BROAD []

GO:0007165 : signal transduction
def The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal, e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light, and ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell, and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.	def The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

GO:0007165 : signal transduction

def
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal, e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light, and ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell, and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

def
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

GO:0007166 : cell surface receptor linked signaling pathway
def ~~Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell.~~	def A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.

GO:0007166 : cell surface receptor linked signaling pathway

def
~~Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell.~~

def
A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.

GO:0007186 : G-protein coupled receptor signaling pathway
def Any series of molecular signals initiated by an extracellular signal combining with a receptor on the surface of the target cell, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction and ends with regulation of a downstream cellular process, e.g. transcription.	def Any series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.

GO:0007186 : G-protein coupled receptor signaling pathway

def
Any series of molecular signals initiated by an extracellular signal combining with a receptor on the surface of the target cell, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction and ends with regulation of a downstream cellular process, e.g. transcription.

def
Any series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.

GO:0007194 : negative regulation of adenylate cyclase activity
	is_a GO:0030818

GO:0007532 : regulation of mating-type specific transcription, DNA-dependent
name ~~regulation of transcription, mating-type specific~~ def ~~Any mating-type specific process that modulates the frequency, rate or extent of transcription.~~	name regulation of mating-type specific transcription, DNA-dependent def Any mating-type specific process that modulates the frequency, rate or extent of cellular DNA-dependent transcription.

GO:0008219 : cell death
def ~~A biological process that results in permanent cessation of all vital functions of a cell.~~	def Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \"apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo.

GO:0008219 : cell death

def
~~A biological process that results in permanent cessation of all vital functions of a cell.~~

def
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \"apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo.

GO:0012501 : programmed cell death
def ~~Cell death resulting from activation of endogenous cellular processes.~~	def A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. synonym "PCD" EXACT []

GO:0012507 : ER to Golgi transport vesicle membrane
	synonym "ER to Golgi constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0012508 : Golgi to ER transport vesicle membrane
	synonym "Golgi to ER constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0012509 : inter-Golgi transport vesicle membrane
	synonym "inter-Golgi transport constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0012510 : trans-Golgi network transport vesicle membrane
	synonym "trans-Golgi network constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0015114 : phosphate ion transmembrane transporter activity
	synonym "phosphate transmembrane transporter activity" EXACT [GOC:vw]

GO:0030133 : transport vesicle
	synonym "constitutive secretory pathway transport vesicle" EXACT []

GO:0030134 : ER to Golgi transport vesicle
	synonym "ER to Golgi constitutive secretory pathway transport vesicle" EXACT []

GO:0030140 : trans-Golgi network transport vesicle
	synonym "trans-Golgi network constitutive secretory pathway transport vesicle" EXACT []

GO:0030141 : secretory granule
name ~~stored secretory granule~~	name secretory granule

GO:0030142 : Golgi to ER transport vesicle
	synonym "Golgi to ER constitutive secretory pathway transport vesicle" EXACT []

GO:0030143 : inter-Golgi transport vesicle
	synonym "inter-Golgi transport constitutive secretory pathway transport vesicle" EXACT []

GO:0030175 : filopodium
synonym ~~"microspike" EXACT []~~

GO:0030658 : transport vesicle membrane
	synonym "constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0031234 : extrinsic to internal side of plasma membrane
	comment Consider also annotating to 'cell cortex ; GO:0005938'.

GO:0031931 : TORC1 complex
def A protein complex that contains the TOR (target of rapamycin) serine/threonine kinase and mediates temporal control of cell growth via regulation of translation, transcription, ribosome biogenesis, nutrient transport, and autophagy. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p; in mammals the complex contains orthologs of the yeast proteins.	def A protein complex that contains at least TOR (target of rapamycin) and Raptor (regulatory-associated protein of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of S6K. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p. synonym "dTOR/dRaptor complex" NARROW [PMID:17183368] "dTORC1" NARROW [PMID:17183368] "mTORC1" NARROW [PMID:18765678, PMID:21548787] "rapamycin and nutrient-sensitive TOR complex" EXACT [PMID:21548787] "TORC1" EXACT [PMID:21548787]

GO:0031931 : TORC1 complex

def
A protein complex that contains the TOR (target of rapamycin) serine/threonine kinase and mediates temporal control of cell growth via regulation of translation, transcription, ribosome biogenesis, nutrient transport, and autophagy. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p; in mammals the complex contains orthologs of the yeast proteins.

def
A protein complex that contains at least TOR (target of rapamycin) and Raptor (regulatory-associated protein of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of S6K. In Saccharomyces, the complex contains Kog1p, Lst8p, Tco89p, and either Tor1p or Tor2p.
synonym
"dTOR/dRaptor complex" NARROW [PMID:17183368]
"dTORC1" NARROW [PMID:17183368]
"mTORC1" NARROW [PMID:18765678, PMID:21548787]
"rapamycin and nutrient-sensitive TOR complex" EXACT [PMID:21548787]
"TORC1" EXACT [PMID:21548787]

GO:0031932 : TORC2 complex
def A protein complex that contains the TOR (target of rapamycin) serine/threonine kinase and mediates spatial control of cell growth via regulation of actin cytoskeleton polarization. In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p; in mammals the complex contains orthologs of the yeast proteins.	def A protein complex that contains at least TOR (target of rapamycin) and Rictor (rapamycin-insensitive companion of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of PKB (also called AKT). In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p. synonym "mTORC2" NARROW [PMID:20496258, PMID:21548787] "rapamycin and nutrient-insensitive TOR complex" EXACT [PMID:21548787] "TORC2" EXACT [PMID:21548787]

GO:0031932 : TORC2 complex

def
A protein complex that contains the TOR (target of rapamycin) serine/threonine kinase and mediates spatial control of cell growth via regulation of actin cytoskeleton polarization. In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p; in mammals the complex contains orthologs of the yeast proteins.

def
A protein complex that contains at least TOR (target of rapamycin) and Rictor (rapamycin-insensitive companion of TOR), or orthologs of, in complex with other signaling components. Mediates the phosphorylation and activation of PKB (also called AKT). In Saccharomyces, the complex contains Avo1p, Avo2p, Tsc11p, Lst8p, Bit61p, Slm1p, Slm2p, and Tor2p.
synonym
"mTORC2" NARROW [PMID:20496258, PMID:21548787]
"rapamycin and nutrient-insensitive TOR complex" EXACT [PMID:21548787]
"TORC2" EXACT [PMID:21548787]

GO:0034505 : tooth mineralization
def ~~The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentine and cementum.~~	def The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentin and cementum.

GO:0035727 : lysophosphatidic acid binding
is_a ~~GO:0005504~~	is_a GO:0036041

GO:0038023 : signaling receptor activity
def Receiving an extracellular or intracellular signal and transmitting the signal to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. comment Note that this term and its child terms are intended for receptors that are directly coupled to a signal transduction pathway. This term should therefore not be used to annotate decoy receptors and other proteins that bind a signal but do not pass the signal on. For receptors that mediate transport of a substance into the cell by receptor-mediated endocytosis, consider instead the term 'cargo receptor activity ; GO:0038024' and its children.	def Receiving a signal and transmitting the signal in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. comment Note that this term and its child terms are intended for receptors that are directly coupled to a signal transduction pathway. This term should therefore not be used to annotate decoy receptors and other proteins that bind a signal but do not pass the signal on. This term can be used to annotate dependence receptors that transduce a signal when a ligand is withdrawn (in this case, signal withdrawal is considered to be the initiating signal), or receptors that signal at a basal level in the absence of a bound agonist. For receptors that mediate transport of a substance into the cell by receptor-mediated endocytosis, consider instead the term 'cargo receptor activity ; GO:0038024' and its children.

GO:0038023 : signaling receptor activity

def
Receiving an extracellular or intracellular signal and transmitting the signal to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
comment
Note that this term and its child terms are intended for receptors that are directly coupled to a signal transduction pathway. This term should therefore not be used to annotate decoy receptors and other proteins that bind a signal but do not pass the signal on. For receptors that mediate transport of a substance into the cell by receptor-mediated endocytosis, consider instead the term 'cargo receptor activity ; GO:0038024' and its children.

def
Receiving a signal and transmitting the signal in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
comment
Note that this term and its child terms are intended for receptors that are directly coupled to a signal transduction pathway. This term should therefore not be used to annotate decoy receptors and other proteins that bind a signal but do not pass the signal on. This term can be used to annotate dependence receptors that transduce a signal when a ligand is withdrawn (in this case, signal withdrawal is considered to be the initiating signal), or receptors that signal at a basal level in the absence of a bound agonist. For receptors that mediate transport of a substance into the cell by receptor-mediated endocytosis, consider instead the term 'cargo receptor activity ; GO:0038024' and its children.

GO:0038035 : G-protein coupled receptor signaling in absence of ligand
	is_a GO:0007186

GO:0042475 : odontogenesis of dentin-containing tooth
name ~~odontogenesis of dentine-containing tooth~~ def The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel. synonym ~~"odontogenesis of dentin-containing tooth" EXACT [GOC:mah]~~	name odontogenesis of dentin-containing tooth def The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel. comment Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See http://en.wikipedia.org/wiki/Placoid_scale#Placoid_scales. synonym "odontogenesis of dentine-containing tooth" EXACT [GOC:mah]

GO:0042475 : odontogenesis of dentin-containing tooth

name
~~odontogenesis of dentine-containing tooth~~
def
The process whose specific outcome is the progression of a dentine-containing tooth over time, from its formation to the mature structure. A dentine-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and are composed mainly of dentine, a dense calcified substance, covered by a layer of enamel.
synonym
~~"odontogenesis of dentin-containing tooth" EXACT [GOC:mah]~~

name
odontogenesis of dentin-containing tooth
def
The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.
comment
Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See http://en.wikipedia.org/wiki/Placoid_scale#Placoid_scales.
synonym
"odontogenesis of dentine-containing tooth" EXACT [GOC:mah]

GO:0042487 : regulation of odontogenesis of dentin-containing tooth
name ~~regulation of odontogenesis of dentine-containing tooth~~ synonym ~~"regulation of odontogenesis of dentin-containing tooth" EXACT [GOC:mah]~~	name regulation of odontogenesis of dentin-containing tooth synonym "regulation of odontogenesis of dentine-containing tooth" EXACT [GOC:mah]

GO:0042488 : positive regulation of odontogenesis of dentin-containing tooth
name ~~positive regulation of odontogenesis of dentine-containing tooth~~ synonym ~~"positive regulation of odontogenesis of dentin-containing tooth" EXACT [GOC:mah]~~	name positive regulation of odontogenesis of dentin-containing tooth synonym "positive regulation of odontogenesis of dentine-containing tooth" RELATED []

GO:0042489 : negative regulation of odontogenesis of dentin-containing tooth
name ~~negative regulation of odontogenesis of dentine-containing tooth~~ synonym ~~"negative regulation of odontogenesis of dentin-containing tooth" EXACT [GOC:mah]~~	name negative regulation of odontogenesis of dentin-containing tooth synonym "negative regulation of odontogenesis of dentine-containing tooth" RELATED []

GO:0042981 : regulation of apoptotic process
name ~~regulation of apoptosis~~ def ~~Any process that modulates the occurrence or rate of cell death by apoptosis.~~	name regulation of apoptotic process def Any process that modulates the occurrence or rate of cell death by apoptotic process. comment This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. synonym "regulation of apoptosis" NARROW []

GO:0042981 : regulation of apoptotic process

name
~~regulation of apoptosis~~
def
~~Any process that modulates the occurrence or rate of cell death by apoptosis.~~

name
regulation of apoptotic process
def
Any process that modulates the occurrence or rate of cell death by apoptotic process.
comment
This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used.
synonym
"regulation of apoptosis" NARROW []

GO:0043065 : positive regulation of apoptotic process
name ~~positive regulation of apoptosis~~ def ~~Any process that activates or increases the frequency, rate or extent of cell death by apoptosis.~~	name positive regulation of apoptotic process def Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process. comment This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is positively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. synonym "positive regulation of apoptosis" NARROW []

GO:0043065 : positive regulation of apoptotic process

name
~~positive regulation of apoptosis~~
def
~~Any process that activates or increases the frequency, rate or extent of cell death by apoptosis.~~

name
positive regulation of apoptotic process
def
Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
comment
This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is positively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used.
synonym
"positive regulation of apoptosis" NARROW []

GO:0043066 : negative regulation of apoptotic process
name ~~negative regulation of apoptosis~~ def ~~Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptosis.~~	name negative regulation of apoptotic process def Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. comment This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is negatively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used. synonym "negative regulation of apoptosis" NARROW []

GO:0043066 : negative regulation of apoptotic process

name
~~negative regulation of apoptosis~~
def
~~Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptosis.~~

name
negative regulation of apoptotic process
def
Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
comment
This term should only be used when it is not possible to determine which phase or subtype of the apoptotic process is negatively regulated by a gene product. Whenever detailed information is available, the more granular children terms should be used.
synonym
"negative regulation of apoptosis" NARROW []

GO:0045762 : positive regulation of adenylate cyclase activity
	is_a GO:0030819

GO:0045894 : negative regulation of mating-type specific transcription, DNA-dependent
name ~~negative regulation of transcription, mating-type specific~~ def ~~Any mating-type specific process that stops, prevents or reduces the rate of transcription.~~	name negative regulation of mating-type specific transcription, DNA-dependent def Any mating-type specific process that stops, prevents or reduces the rate of cellular DNA-dependent transcription.

GO:0045895 : positive regulation of mating-type specific transcription, DNA-dependent
name ~~positive regulation of transcription, mating-type specific~~ def ~~Any mating-type specific process that activates or increases the rate of transcription.~~	name positive regulation of mating-type specific transcription, DNA-dependent def Any mating-type specific process that activates or increases the rate of cellular DNA-dependent transcription.

GO:0046848 : hydroxyapatite binding
def Interacting selectively and non-covalently with hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentine.	def Interacting selectively and non-covalently with hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentin.

GO:0051131 : chaperone-mediated protein complex assembly
	alt_id GO:0034619 synonym "cellular chaperone-mediated protein complex assembly" EXACT []

GO:0060199 : clathrin sculpted glutamate transport vesicle
	synonym "clathrin sculpted glutamate constitutive secretory pathway transport vesicle" EXACT []

GO:0060200 : clathrin sculpted acetylcholine transport vesicle
	synonym "clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle" EXACT []

GO:0060201 : clathrin sculpted acetylcholine transport vesicle membrane
	synonym "clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0060202 : clathrin sculpted acetylcholine transport vesicle lumen
	synonym "clathrin sculpted acetylcholine constitutive secretory pathway transport vesicle lumen" EXACT []

GO:0060203 : clathrin sculpted glutamate transport vesicle membrane
	synonym "clathrin sculpted glutamate constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0060204 : clathrin sculpted glutamate transport vesicle lumen
	synonym "clathrin sculpted glutamate constitutive secretory pathway transport vesicle lumen" EXACT []

GO:0060640 : positive regulation of dentin-containing tooth bud formation by mesenchymal-epithelial signaling
name ~~positive regulation of dentine-containing tooth bud formation by mesenchymal-epithelial signaling~~	name positive regulation of dentin-containing tooth bud formation by mesenchymal-epithelial signaling synonym "positive regulation of dentine-containing tooth bud formation by mesenchymal-epithelial signaling" RELATED []

GO:0060790 : tooth placode formation
def ~~The developmental process in which the tooth placode forms. An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud.~~	def The developmental process in which the tooth placode forms. A tooth placode is a thickening of the ectoderm that will give rise to the tooth bud.

GO:0061364 : apoptotic process involved in luteolysis
name ~~apoptosis involved in luteolysis~~ def ~~The process of apoptosis that contributes to luteolysis.~~	name apoptotic process involved in luteolysis def The apoptotic process that contributes to luteolysis. synonym "apoptosis involved in luteolysis" NARROW [] intersection_of GO:0006915 part_of GO:0001554

GO:0070081 : clathrin sculpted monoamine transport vesicle
	synonym "clathrin sculpted monoamine constitutive secretory pathway transport vesicle" EXACT []

GO:0070082 : clathrin sculpted monoamine transport vesicle lumen
	synonym "clathrin sculpted monoamine constitutive secretory pathway transport vesicle lumen" EXACT []

GO:0070083 : clathrin sculpted monoamine transport vesicle membrane
	synonym "clathrin sculpted monoamine constitutive secretory pathway transport vesicle membrane" EXACT []

GO:0070166 : enamel mineralization
	relationship part_of GO:0097186

GO:0070319 : Golgi to plasma membrane transport vesicle
	synonym "Golgi to plasma membrane constitutive secretory pathway transport vesicle" EXACT []

GO:0070381 : endosome to plasma membrane transport vesicle
	synonym "endosome to plasma membrane constitutive secretory pathway transport vesicle" EXACT []

GO:0070382 : exocytic vesicle
	synonym "exocytic constitutive secretory pathway transport vesicle" EXACT []

GO:0070468 : dentin secretion
name ~~dentine secretion~~ def ~~The regulated release by odontoblasts of the extracellular matrix constituents, including collagen, that form the basis of dentine.~~ synonym ~~"dentin secretion" EXACT [GOC:mah]~~	name dentin secretion def The regulated release by odontoblasts of the extracellular matrix constituents, including collagen, that form the basis of dentin. synonym "dentine secretion" EXACT [GOC:mah]

GO:0070538 : oleic acid binding
is_a ~~GO:0005504~~	is_a GO:0036041

GO:0070539 : linoleic acid binding
is_a ~~GO:0005504~~	is_a GO:0036041

GO:0070540 : stearic acid binding
is_a ~~GO:0005504~~	is_a GO:0036041

GO:0071895 : odontoblast differentiation
def The process in which a relatively unspecialized cell of neural crest origin acquires the specialized features of an odontoblast, a cell on the outer surface of the dental pulp whose biological function is the creation of dentine.	def The process in which a relatively unspecialized cell of neural crest origin acquires the specialized features of an odontoblast, a cell on the outer surface of the dental pulp whose biological function is the creation of dentin.

GO:0090034 : regulation of chaperone-mediated protein complex assembly

name
~~regulation of cellular chaperone-mediated protein complex assembly~~
def
Any process that modulates the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex.
intersection_of
~~regulates GO:0034619~~
relationship
~~regulates GO:0034619~~

name
regulation of chaperone-mediated protein complex assembly
def
Any process that modulates the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
intersection_of
regulates GO:0051131
relationship
regulates GO:0051131

GO:0090035 : positive regulation of chaperone-mediated protein complex assembly

name
~~positive regulation of cellular chaperone-mediated protein complex assembly~~
def
Any process that increases the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex.
intersection_of
~~positively_regulates GO:0034619~~
relationship
~~positively_regulates GO:0034619~~

name
positive regulation of chaperone-mediated protein complex assembly
def
Any process that increases the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
intersection_of
positively_regulates GO:0051131
relationship
positively_regulates GO:0051131

GO:2001227 : quercitrin binding

File Stats

Term counts for the old and new files
Ontology	Old file	New file	Change
molecular function	9140 9140 (100.0%) defined	9148 9148 (100.0%) defined	+8
cellular component	2922 2922 (100.0%) defined	2924 2924 (100.0%) defined	+2
biological process	21591 21591 (100.0%) defined	21603 21603 (100.0%) defined	+12
Obsolete	1603 (4.5% of total)	1603 (4.5% of total)	0 (0.0%)
Totals	33653 33653 (100.0%) defined 35256 inc. obsoletes	33675 33675 (100.0%) defined 35278 inc. obsoletes	+22 (+0.1%)

Ontology report info