Gene Ontology
Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2011-08-06.obo; date: 05:08:2011 14:39; CVS revision: 1.2155
- file 2 (new): go-2011-08-13.obo; date: 12:08:2011 16:34; CVS revision: 1.2181

NEW TERMS
=========

ID	name	namespace
GO:0002190	cap-independent translational initiation	biological_process
GO:0002191	cap-dependent translational initiation	biological_process
GO:0002192	IRES-dependent translational initiation	biological_process
GO:0002193	MAML1-RBP-Jkappa- ICN1 complex	cellular_component
GO:0035970	peptidyl-threonine dephosphorylation	biological_process
GO:0035971	peptidyl-histidine dephosphorylation	biological_process
GO:0035973	aggrephagy	biological_process
GO:0044350	micropinocytosis	biological_process
GO:0044351	macropinocytosis	biological_process
GO:0044352	pinosome	cellular_component
GO:0044353	micropinosome	cellular_component
GO:0044354	macropinosome	cellular_component
GO:0044355	clearance of foreign intracellular DNA	biological_process
GO:0044356	clearance of foreign intracellular DNA by conversion of DNA cytidine to uridine	biological_process
GO:0052711	ergothioneine biosynthesis from N-alpha,N-alpha,N-alpha-trimethyl-L-histidine	biological_process
GO:0052712	inositol phosphosphingolipid phospholipase activity	molecular_function
GO:0052713	inositol phosphorylceramide phospholipase activity	molecular_function
GO:0052714	mannosyl-inositol phosphorylceramide phospholipase activity	molecular_function
GO:0052715	mannosyl-diinositol phosphorylceramide phospholipase activity	molecular_function
GO:0052716	hydroquinone:oxygen oxidoreductase activity	molecular_function
GO:0052717	tRNA-specific adenosine-34 deaminase activity	molecular_function
GO:0052718	tRNA-specific adenosine-34 deaminase complex	cellular_component
GO:0072689	MCM complex assembly	biological_process
GO:0080181	lateral root branching	biological_process
GO:0080182	histone H3-K4 trimethylation	biological_process
GO:0080183	response to photooxidative stress	biological_process
GO:0080184	response to phenylpropanoid	biological_process
GO:0080185	effector dependent induction by symbiont of host immune response	biological_process
GO:0090411	brassinosteroid binding	molecular_function
GO:0097151	positive regulation of inhibitory postsynaptic membrane potential	biological_process
GO:2000986	negative regulation of behavioral fear response	biological_process
GO:2000987	positive regulation of behavioral fear response	biological_process
GO:2000988	regulation of hemicellulose catabolic process	biological_process
GO:2000989	negative regulation of hemicellulose catabolic process	biological_process
GO:2000990	positive regulation of hemicellulose catabolic process	biological_process
GO:2000991	regulation of galactomannan catabolic process	biological_process
GO:2000992	negative regulation of galactomannan catabolic process	biological_process
GO:2000993	positive regulation of galactomannan catabolic process	biological_process
GO:2000994	regulation of mannan catabolic process	biological_process
GO:2000995	negative regulation of mannan catabolic process	biological_process
GO:2000996	positive regulation of mannan catabolic process	biological_process
GO:2000997	regulation of cellulose catabolic process	biological_process
GO:2000998	negative regulation of cellulose catabolic process	biological_process
GO:2000999	positive regulation of cellulose catabolic process	biological_process
GO:2001000	regulation of xylan catabolic process	biological_process
GO:2001001	negative regulation of xylan catabolic process	biological_process
GO:2001002	positive regulation of xylan catabolic process	biological_process
GO:2001003	regulation of pectin catabolic process	biological_process
GO:2001004	negative regulation of pectin catabolic process	biological_process
GO:2001005	positive regulation of pectin catabolic process	biological_process
GO:2001006	regulation of cellulose biosynthetic process	biological_process
GO:2001007	negative regulation of cellulose biosynthetic process	biological_process
GO:2001008	positive regulation of cellulose biosynthetic process	biological_process
GO:2001009	regulation of plant-type cell wall cellulose biosynthetic process	biological_process
GO:2001010	negative regulation of plant-type cell wall cellulose biosynthetic process	biological_process
GO:2001011	positive regulation of plant-type cell wall cellulose biosynthetic process	biological_process
GO:2001012	mesenchymal cell differentiation involved in renal system development	biological_process
GO:2001014	regulation of skeletal muscle cell differentiation	biological_process
GO:2001015	negative regulation of skeletal muscle cell differentiation	biological_process
GO:2001016	positive regulation of skeletal muscle cell differentiation	biological_process


OBSOLETIONS
===========
GO:0018853, perillyl-CoA synthetase activity (molecular_function)


TERM MERGES
===========
GO:0006345, loss of chromatin silencing was merged into GO:0031936, negative regulation of chromatin silencing
GO:0051768, nitric-oxide synthase 2 biosynthetic process was merged into GO:0051767, nitric-oxide synthase biosynthetic process
GO:0051772, regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051769, regulation of nitric-oxide synthase biosynthetic process
GO:0051773, positive regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051770, positive regulation of nitric-oxide synthase biosynthetic process
GO:0051774, negative regulation of nitric-oxide synthase 2 biosynthetic process was merged into GO:0051771, negative regulation of nitric-oxide synthase biosynthetic process


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	alt_id	def	comment	subset	synonym	xref	is_a	intersection_of	relationship	is_obsolete	consider	
GO:0000050										1 D			
GO:0000054					1 A								
GO:0000127			C										
GO:0000278					1 A								
GO:0000902					1 A								
GO:0000988					1 A								
GO:0001071					1 A								
GO:0001308	C					1 A		1 D, 1 A	1 D, 2 A				
GO:0001403					1 A								
GO:0002181					1 A								
GO:0003729					1 A								
GO:0003735					1 A								
GO:0003774					1 D								
GO:0003918								1 A					
GO:0003924					1 A								
GO:0003990								1 D, 1 A					
GO:0004518					1 A								
GO:0004672					1 D								
GO:0004721					1 D								
GO:0005215					1 D								
GO:0005515					1 D								
GO:0005643						1 A							
GO:0005975					1 A								
GO:0006259					1 D								
GO:0006260					1 A								
GO:0006281					1 A								
GO:0006310					1 A								
GO:0006325					1 A								
GO:0006352					1 A								
GO:0006353					1 A								
GO:0006354					1 A								
GO:0006360					1 A								
GO:0006364					1 A								
GO:0006366					1 A								
GO:0006383					1 A								
GO:0006397					1 A								
GO:0006401					1 A								
GO:0006412					1 D								
GO:0006413					1 A								
GO:0006414					1 A								
GO:0006417					1 A								
GO:0006418					1 A								
GO:0006464					1 D								
GO:0006468					1 A								
GO:0006470					1 A								
GO:0006486					1 A								
GO:0006497					1 A								
GO:0006520					1 A								
GO:0006605					1 A								
GO:0006629					1 A								
GO:0006725					1 D								
GO:0006810					1 D								
GO:0006811					1 A								
GO:0006865					1 A								
GO:0006869					1 A								
GO:0006873					1 A								
GO:0006887					1 A								
GO:0006897					1 A								
GO:0006907			C			1 D, 1 A							
GO:0006950					1 D								
GO:0006970					1 A								
GO:0006974					1 A								
GO:0006979					1 A								
GO:0007018								1 A					
GO:0007049					1 D								
GO:0007126					1 D								
GO:0007165					1 D								
GO:0008033					1 A								
GO:0008090						1 D, 1 A							
GO:0008092					1 A								
GO:0008134					1 A								
GO:0008135					1 A								
GO:0008168					1 A								
GO:0008213					1 A								
GO:0008380					1 A								
GO:0008565					1 A								
GO:0008643					1 A								
GO:0008657								1 D, 2 A		2 A			
GO:0008886	C												
GO:0009307			C					1 A					
GO:0009311					1 A								
GO:0009408					1 A								
GO:0009451					1 A								
GO:0010324					1 A								
GO:0010830								1 A					
GO:0010831								1 D, 1 A					
GO:0010832								1 D, 1 A					
GO:0015931					1 A								
GO:0016044					1 D								
GO:0016070					1 D								
GO:0016192					1 D								
GO:0016197					1 A								
GO:0016301					1 A								
GO:0016570					1 A								
GO:0016740					1 D								
GO:0016746					1 A								
GO:0016757					1 A								
GO:0016765					1 A								
GO:0016787					1 D								
GO:0016791					1 A								
GO:0016798					1 A								
GO:0016810					1 A								
GO:0016887					1 A								
GO:0018193					1 A								
GO:0018853			C	A				2 D			A	2 A	
GO:0019725					1 D								
GO:0019843					1 A								
GO:0019899					1 A								
GO:0022857					1 A								
GO:0023052					1 A								
GO:0030048								1 A					
GO:0030144	C					1 A							
GO:0030435					1 D								
GO:0030528					1 D								
GO:0030555					1 A								
GO:0030674					1 A								
GO:0031399					1 A								
GO:0031505					1 D								
GO:0031936		1 A				1 A							
GO:0032182					1 A								
GO:0032200					1 A								
GO:0032542								1 A					
GO:0032543					1 A								
GO:0032989					1 D								
GO:0033043					1 A								
GO:0042254					1 D								
GO:0042255					1 A								
GO:0042273					1 A								
GO:0042274					1 A								
GO:0042393					1 A								
GO:0042594					1 A								
GO:0043144					1 A								
GO:0043167					1 A								
GO:0043543					1 A								
GO:0043934					1 A								
GO:0044005			C										
GO:0044006			C										
GO:0044255					1 D								
GO:0044257					1 D								
GO:0044262					1 D								
GO:0045182					1 D								
GO:0046483					1 D								
GO:0047253	C					1 A							
GO:0048193					1 A								
GO:0048284					1 A								
GO:0048285					1 A								
GO:0048308					1 A								
GO:0051037										1 A			
GO:0051049					1 A								
GO:0051052					1 A								
GO:0051082					1 A								
GO:0051169					1 A								
GO:0051276					1 D								
GO:0051321					1 A								
GO:0051603					1 A								
GO:0051604					1 A								
GO:0051726					1 A								
GO:0051767		1 A	C			16 A							
GO:0051769		1 A	C			7 A							
GO:0051770		1 A	C			12 A							
GO:0051771		1 A	C			11 A							
GO:0051819			C										
GO:0051820			C										
GO:0052707	C					2 A				1 A			
GO:0055085					1 A								
GO:0055086					1 A								
GO:0060080			C										
GO:0061025					1 A								
GO:0070647					1 A								
GO:0070925					1 A								
GO:0071554					1 A								
GO:0072161								1 D, 1 A					
GO:0072583								1 D, 1 A					
GO:0072584								1 D, 1 A					
GO:0072586								1 D, 1 A					
GO:0072587								1 D, 1 A					
GO:0080066							1 A						
GO:0080067							1 A						
GO:0080068							1 A						
GO:0080069							1 A						
GO:0080070							1 A						
GO:0080071							1 A						
GO:0090404													
GO:0090406													
GO:2000371								1 A					
GO:2000372								1 D, 1 A					
GO:2000373								1 A					
GO:2000898								3 D, 1 A					
GO:2000907								3 D, 1 A					
GO:2000908								3 D, 1 A					
GO:2000912								3 D, 1 A					
GO:2000913								3 D, 1 A					
GO:2000914								3 D, 1 A					
GO:2000915								2 D, 1 A					
GO:2000916								1 D, 1 A					
GO:2000917								1 D, 1 A					
GO:2000918								2 D, 1 A					
GO:2000919								1 D, 1 A					
GO:2000920								1 D, 1 A					
GO:2000921								2 D, 1 A					
GO:2000922								1 D, 1 A					
GO:2000923								1 D, 1 A					
GO:2000930						1 D, 1 A							
GO:2000931						1 D, 1 A							
GO:2000932						1 D, 1 A							



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9037	9043	+6
	(9037 defined)	(9043 defined)	
cellular component	2887	2892	+5
	(2887 defined)	(2892 defined)	
biological process	21274	21317	+43
	(21274 defined)	(21317 defined)	

Obsolete	1563	1564	+1
	(4.5% of total)	 (4.5% of total)	(+0.1%)

Totals	33198	33252	+55 (+0.2%)
	33198 (100.0%) defined	33252 (100.0%) defined	
	34761 inc. obs	34816 inc. obs