Ontology Comparison Report ========================== Files used: - file 1 (old): go-2011-07-09.obo; date: 07:07:2011 11:23; CVS revision: 1.2082 - file 2 (new): go-2011-07-16.obo; date: 15:07:2011 15:41; CVS revision: 1.2091 NEW TERMS ========= ID name namespace GO:0035923 flurbiprofen binding molecular_function GO:0035924 cellular response to vascular endothelial growth factor stimulus biological_process GO:0061387 regulation of extent of cell growth biological_process GO:0061388 regulation of rate of cell growth biological_process GO:0061389 regulation of direction of cell growth biological_process GO:0061390 positive regulation of direction of cell growth biological_process GO:0061391 negative regulation of direction of cell growth biological_process GO:0097100 supercoiled DNA binding molecular_function GO:2000804 regulation of termination of RNA polymerase II transcription, poly(A)-coupled biological_process GO:2000805 negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled biological_process GO:2000806 positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled biological_process GO:2000807 regulation of synaptic vesicle clustering biological_process GO:2000808 negative regulation of synaptic vesicle clustering biological_process GO:2000809 positive regulation of synaptic vesicle clustering biological_process GO:2000810 regulation of tight junction assembly biological_process GO:2000811 negative regulation of anoikis biological_process GO:2000812 regulation of barbed-end actin filament capping biological_process GO:2000813 negative regulation of barbed-end actin filament capping biological_process GO:2000814 positive regulation of barbed-end actin filament capping biological_process GO:2000815 regulation of mRNA stability involved in response to oxidative stress biological_process GO:2000816 negative regulation of mitotic sister chromatid separation biological_process GO:2000817 regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore biological_process GO:2000818 negative regulation of myoblast proliferation biological_process GO:2000819 regulation of nucleotide-excision repair biological_process GO:2000820 negative regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation biological_process GO:2000821 regulation of grooming behavior biological_process GO:2000822 regulation of behavioral fear response biological_process GO:2000823 regulation of androgen receptor activity biological_process GO:2000824 negative regulation of androgen receptor activity biological_process GO:2000825 positive regulation of androgen receptor activity biological_process OBSOLETIONS =========== GO:2000745, positive regulation of transcription from RNA polymerase III promoter involved in smooth muscle cell differentiation (biological_process) This term was made obsolete because it was added in error. TERM MERGES =========== GO:0007587, sugar utilization was merged into GO:0009758, carbohydrate utilization TERM CHANGES ============ GO:0001177 : regulation of transcriptional open complex formation at RNA polymerase II promoter + intersection_of: GO:0065007 + intersection_of: regulates GO:0001113 GO:0001178 : regulation of transcriptional start site selection at RNA polymerase II promoter + intersection_of: GO:0065007 + intersection_of: regulates GO:0001174 GO:0001558 : regulation of cell growth - def: Any process that modulates the frequency, rate or extent of cell growth. + def: Any process that modulates the frequency, rate, extent or direction of cell growth. GO:0005576 : extracellular region - comment: Note that this term is intended to annotate gene products that are not uniformly attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'. + comment: Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'. GO:0009758 : carbohydrate utilization + alt_id: GO:0007587 + synonym: "sugar utilization" NARROW [GOC:mcc2] GO:0030307 : positive regulation of cell growth - def: Any process that activates or increases the frequency, rate or extent of cell growth. + def: Any process that activates or increases the frequency, rate, extent or direction of cell growth. GO:0030308 : negative regulation of cell growth - def: Any process that stops, prevents, or reduces the frequency, rate or extent of cell growth. + def: Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth. GO:0043610 : regulation of carbohydrate utilization + synonym: "regulation of sugar utilization" NARROW [GOC:mcc2] GO:0048010 : vascular endothelial growth factor receptor signaling pathway + is_a: GO:0035924 GO:0070930 : trans-translation-dependent protein tagging - name: co-translational protein tagging + name: trans-translation-dependent protein tagging + synonym: "co-translational protein tagging" EXACT [GOC:jh2, GOC:jsg] + relationship: has_part GO:0070929 GO:0090262 : regulation of transcription-coupled nucleotide-excision repair - is_a: GO:0006282 + is_a: GO:2000819 GO:2000745 : positive regulation of transcription from RNA polymerase III promoter involved in smooth muscle cell differentiation - def: Any positive regulation of transcription from RNA polymerase III promoter that is involved in smooth muscle cell differentiation. + def: OBSOLETE. Any positive regulation of transcription from RNA polymerase III promoter that is involved in smooth muscle cell differentiation. + comment: This term was made obsolete because it was added in error. - is_a: GO:0045945 - intersection_of: GO:0045945 - intersection_of: part_of GO:0051145 - relationship: part_of GO:0051145 + is_obsolete: true FILE STATS ========== Term counts for the old and new files Ontology Old file New file Change molecular function 9026 9028 +2 (9026 defined) (9028 defined) cellular component 2858 2858 (2858 defined) (2858 defined) biological process 21010 21036 +26 (21009 defined) (21035 defined) Obsolete 1559 1560 +1 (4.5% of total) (4.5% of total) (+0.1%) Totals 32894 32922 +29 (+0.1%) 32893 (100.0%) defined 32921 (100.0%) defined 34453 inc. obs 34482 inc. obs