Ontology Comparison Report

Files used:

file 1 (old): go-2011-06-18.obo; date: 17:06:2011 13:42; CVS revision: 1.2042
file 2 (new): go-2011-06-25.obo; date: 24:06:2011 15:09; CVS revision: 1.2067

New terms
Obsoletions
Term merges
Term changes
File Stats

New terms

ID	name	namespace
GO:0001173	DNA-dependent transcriptional start site selection	biological_process
GO:0001174	transcriptional start site selection at RNA polymerase II promoter	biological_process
GO:0001175	transcriptional start site selection at RNA polymerase III promoter	biological_process
GO:0001176	transcriptional start site selection at bacterial-type RNA polymerase promoter	biological_process
GO:0001177	regulation of transcriptional open complex formation at RNA polymerase II promoter	biological_process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	biological_process
GO:0002188	translation reinitiation	biological_process
GO:0035898	parathyroid hormone secretion	biological_process
GO:0035899	negative regulation of blood coagulation in other organism	biological_process
GO:0035900	response to isolation stress	biological_process
GO:0035901	cellular response to isolation stress	biological_process
GO:0035902	response to immobilization stress	biological_process
GO:0035903	cellular response to immobilization stress	biological_process
GO:0035904	aorta development	biological_process
GO:0035905	ascending aorta development	biological_process
GO:0035906	descending aorta development	biological_process
GO:0035907	dorsal aorta development	biological_process
GO:0035908	ventral aorta development	biological_process
GO:0035909	aorta morphogenesis	biological_process
GO:0035910	ascending aorta morphogenesis	biological_process
GO:0035911	descending aorta morphogenesis	biological_process
GO:0035912	dorsal aorta morphogenesis	biological_process
GO:0035913	ventral aorta morphogenesis	biological_process
GO:0035914	skeletal muscle cell differentiation	biological_process
GO:0038008	TRAF-mediated signal transduction	biological_process
GO:0038009	regulation of signal transduction by receptor internalization	biological_process
GO:0038010	positive regulation of signal transduction by receptor internalization	biological_process
GO:0038011	negative regulation of signal transduction by receptor internalization	biological_process
GO:0038012	negative regulation of Wnt receptor signaling pathway by Wnt receptor internalization	biological_process
GO:0038013	positive regulation of Wnt receptor signaling pathway by Wnt receptor internalization	biological_process
GO:0038014	negative regulation of insulin receptor signaling pathway by insulin receptor internalization	biological_process
GO:0038015	positive regulation of insulin receptor signaling pathway by insulin receptor internalization	biological_process
GO:0038016	insulin receptor internalization	biological_process
GO:0038017	Wnt receptor internalization	biological_process
GO:0038018	Wnt receptor catabolic process	biological_process
GO:0038019	Wnt receptor recycling	biological_process
GO:0038020	insulin receptor recycling	biological_process
GO:0039518	suppression by virus of host cytokine activity	biological_process
GO:0039519	modulation by virus of host autophagy	biological_process
GO:0039520	induction by virus of host autophagy	biological_process
GO:0039521	suppression by virus of host autophagy	biological_process
GO:0039522	suppression by virus of host mRNA export from nucleus	biological_process
GO:0039523	suppression by virus of host RNA polymerase II activity	biological_process
GO:0039524	suppression by virus of host mRNA processing	biological_process
GO:0039525	modulation by virus of host chromatin organization	biological_process
GO:0039526	modulation by virus of host apoptosis	biological_process
GO:0039527	suppression by virus of host TRAF-mediated signal transduction	biological_process
GO:0071963	establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:0071964	establishment of cell polarity regulating cell shape	biological_process
GO:0097081	vascular smooth muscle cell fate commitment	biological_process
GO:0097082	vascular smooth muscle cell fate specification	biological_process
GO:0097083	vascular smooth muscle cell fate determination	biological_process
GO:0097084	vascular smooth muscle cell development	biological_process
GO:0097085	interferon regulatory factor 3-interferon regulatory factor 5 complex	cellular_component
GO:0097086	amniotic stem cell differentiation	biological_process
GO:0097087	interleukin-17A production	biological_process
GO:0097088	interleukin-17F production	biological_process
GO:2000763	positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process	biological_process
GO:2000764	positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis	biological_process
GO:2000765	regulation of cytoplasmic translation	biological_process
GO:2000766	negative regulation of cytoplasmic translation	biological_process
GO:2000767	positive regulation of cytoplasmic translation	biological_process
GO:2000768	positive regulation of nephron tubule epithelial cell differentiation	biological_process
GO:2000769	regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000770	negative regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000771	positive regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000772	regulation of cellular senescence	biological_process
GO:2000773	negative regulation of cellular senescence	biological_process
GO:2000774	positive regulation of cellular senescence	biological_process
GO:2000775	histone H3-S10 phosphorylation involved in chromosome condensation	biological_process
GO:2000776	histone H4 acetylation involved in response to DNA damage stimulus	biological_process
GO:2000777	positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia	biological_process
GO:2000778	positive regulation of interleukin-6 secretion	biological_process
GO:2000779	regulation of double-strand break repair	biological_process
GO:2000780	negative regulation of double-strand break repair	biological_process
GO:2000781	positive regulation of double-strand break repair	biological_process
GO:2000782	regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000783	negative regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000784	positive regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000785	regulation of autophagic vacuole assembly	biological_process
GO:2000786	positive regulation of autophagic vacuole assembly	biological_process
GO:2000787	regulation of venous endothelial cell fate commitment	biological_process
GO:2000788	negative regulation of venous endothelial cell fate commitment	biological_process
GO:2000789	positive regulation of venous endothelial cell fate commitment	biological_process
GO:2000790	regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000791	negative regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000792	positive regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000793	cell proliferation involved in heart valve development	biological_process

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID	name	def	subset	synonym	xref	is_a	intersection_of	relationship
Term ID	name	def	subset	synonym	xref	is_a	intersection_of	relationship
GO:0000408 EKC/KEOPS complex	C
GO:0000988 protein binding transcription factor activity			1 A
GO:0000989 transcription factor binding transcription factor activity		C
GO:0000990 core RNA polymerase binding transcription factor activity		C
GO:0000991 core RNA polymerase II binding transcription factor activity		C
GO:0000995 core RNA polymerase III binding transcription factor activity		C
GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity	C	C
GO:0001007 RNA polymerase III transcription factor binding transcription factor activity		C
GO:0001026 TFIIIB-type transcription factor activity		C
GO:0001027 RNA polymerase III type 1 promoter TFIIIB-type transcription factor activity		C
GO:0001028 RNA polymerase III type 2 promoter TFIIIB-type transcription factor activity		C
GO:0001029 RNA polymerase III type 3 promoter TFIIIB-type transcription factor activity		C
GO:0001040 RNA polymerase III hybrid type promoter TFIIIB-type transcription factor activity		C
GO:0001053 plastid sigma factor activity		C
GO:0001071 nucleic acid binding transcription factor activity			1 A
GO:0001076 RNA polymerase II transcription factor binding transcription factor activity		C
GO:0001082 RNA polymerase I transcription factor binding transcription factor activity		C
GO:0001083 RNA polymerase II basal transcription factor binding transcription factor activity		C
GO:0001134 transcription factor recruiting transcription factor activity		C
GO:0001139 core RNA polymerase II recruiting transcription factor activity		C
GO:0001320 age-dependent response to reactive oxygen species involved in chronological cell aging				1 D, 1 A
GO:0003199 endocardial cushion to mesenchymal transition involved in heart valve formation	C			1 A
GO:0003249 cell proliferation involved in heart valve morphogenesis						1 A
GO:0003302 transforming growth factor beta receptor signaling pathway involved in heart jogging						1 A
GO:0003850 2-deoxyglucose-6-phosphatase activity					1 A	1 D, 1 A
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity						1 D, 1 A
GO:0004346 glucose-6-phosphatase activity		C			2 A	1 D, 1 A
GO:0006849 plasma membrane pyruvate transport						1 A
GO:0008877 glucose-1-phosphatase activity		C			2 A	1 D, 1 A
GO:0010569 regulation of double-strand break repair via homologous recombination						1 D, 1 A
GO:0010746 regulation of plasma membrane long-chain fatty acid transport						1 A
GO:0010747 positive regulation of plasma membrane long-chain fatty acid transport						1 A
GO:0010748 negative regulation of plasma membrane long-chain fatty acid transport						1 A
GO:0014902 myotube differentiation						1 D, 1 A
GO:0015911 plasma membrane long-chain fatty acid transport						1 A
GO:0019050 suppression by virus of host apoptosis						1 D, 1 A
GO:0019051 induction by virus of host apoptosis						1 D, 1 A
GO:0019057 modulation by virus of host translation	C			1 A
GO:0019363 pyridine nucleotide biosynthetic process						1 D
GO:0019364 pyridine nucleotide catabolic process						1 D
GO:0019975 interleukin-17 binding		C
GO:0030368 interleukin-17 receptor activity		C
GO:0030953 astral microtubule organization	C
GO:0030954 astral microtubule nucleation	C
GO:0031053 primary miRNA processing	C			1 D, 1 A
GO:0031054 pre-miRNA processing	C			1 D, 1 A
GO:0031623 receptor internalization		C
GO:0031657 regulation of cyclin-dependent protein kinase activity involved in G1/S	C
GO:0032620 interleukin-17 production		C
GO:0032660 regulation of interleukin-17 production		C
GO:0032700 negative regulation of interleukin-17 production		C
GO:0032740 positive regulation of interleukin-17 production		C
GO:0032932 negative regulation of astral microtubule depolymerization	C
GO:0033209 tumor necrosis factor-mediated signaling pathway		C		2 D, 2 A
GO:0034246 mitochondrial RNA polymerase binding promoter specificity activity		C
GO:0035195 gene silencing by miRNA				1 A
GO:0035196 production of miRNAs involved in gene silencing by miRNA				1 A
GO:0035278 negative regulation of translation involved in gene silencing by miRNA				1 A
GO:0035279 mRNA cleavage involved in gene silencing by miRNA				1 A
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA				1 A
GO:0035281 pre-miRNA export from nucleus	C			1 A
GO:0035424 MAPK import into nucleus involved in innate immune response						1 A
GO:0035893 negative regulation of platelet aggregation in other organism						1 A
GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway						1 A
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity						1 D, 1 A
GO:0042235 interleukin-17 biosynthetic process		C
GO:0045378 regulation of interleukin-17 biosynthetic process		C
GO:0045379 negative regulation of interleukin-17 biosynthetic process		C
GO:0045380 positive regulation of interleukin-17 biosynthetic process		C
GO:0046778 modification by virus of host mRNA processing						1 D, 1 A
GO:0046780 suppression by virus of host mRNA splicing						1 D, 1 A
GO:0047386 fructose-2,6-bisphosphate 6-phosphatase activity						1 D, 1 A
GO:0050307 sucrose-phosphate phosphatase activity	C			2 D, 1 A	3 A	1 D, 1 A
GO:0050308 sugar-phosphatase activity				1 D, 2 A	1 A	1 D, 1 A
GO:0050309 sugar-terminal-phosphatase activity		C		2 D, 2 A	1 D	1 D, 1 A
GO:0060172 astral microtubule depolymerization	C
GO:0060414 aorta smooth muscle tissue morphogenesis		C						1 D, 1 A
GO:0060804 positive regulation of Wnt receptor signaling pathway by BMP signaling pathway	C	C		1 A
GO:0060948 cardiac vascular smooth muscle cell development						1 A
GO:0060949 cardiac vascular smooth muscle cell fate commitment						1 A
GO:0060964 regulation of gene silencing by miRNA				1 A
GO:0060965 negative regulation of gene silencing by miRNA				1 A
GO:0061050 regulation of cell growth involved in cardiac muscle cell development						1 A
GO:0061246 establishment or maintenance of bipolar cell polarity regulating cell shape						1 D, 1 A
GO:0061340 establishment or maintenance of monopolar cell polarity regulating in cell shape						1 D, 1 A
GO:0061362 negative regulation of maintenance of bipolar cell polarity regulating cell shape						1 A
GO:0061372 activin receptor signaling pathway involved in heart jogging						1 A
GO:0070456 galactose-1-phosphate phosphatase activity						1 D, 1 A
GO:0070878 primary miRNA binding	C			1 A
GO:0070883 pre-miRNA binding				1 A
GO:0071430 pre-miRNA-containing ribonucleoprotein complex export from nucleus	C			1 A
GO:0071527 semaphorin-plexin signaling pathway involved in outflow tract morphogenesis						1 A
GO:0071847 TNFSF11-mediated signaling pathway				3 A		1 D, 1 A
GO:0072615 interleukin-17 secretion		C
GO:0090342 regulation of cell aging				1 D			2 A
GO:0090343 positive regulation of cell aging				1 D
GO:0090344 negative regulation of cell aging				1 D
GO:0097068 response to thyroxine stimulus				2 A
GO:0097069 cellular response to thyroxine stimulus				1 A
GO:0097073 interferon regulatory factor 5 complex
GO:0097080 plasma membrane selenite transport				1 A
GO:2000036 regulation of stem cell maintenance						1 A
GO:2000042 negative regulation of double-strand break repair via homologous recombination						1 D, 1 A
GO:2000100 regulation of establishment or maintenance of bipolar cell polarity regulating cell shape						1 A
GO:2000247 positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape						1 D, 1 A
GO:2000477 regulation of metanephric glomerular visceral epithelial cell development						1 A
GO:2000631 regulation of pre-miRNA processing	C			1 A
GO:2000632 negative regulation of pre-miRNA processing	C			1 D, 1 A
GO:2000633 positive regulation of pre-miRNA processing	C			1 D, 1 A
GO:2000634 regulation of primary miRNA processing	C			1 D, 1 A
GO:2000635 negative regulation of primary miRNA processing	C			1 D, 1 A
GO:2000636 positive regulation of primary miRNA processing	C			1 D, 1 A
GO:2000637 positive regulation of gene silencing by miRNA				1 A
GO:2000722 regulation of cardiac vascular smooth muscle cell differentiation						1 A
GO:2000725 regulation of cardiac muscle cell differentiation						1 A
GO:2000730 regulation of termination of RNA polymerase I transcription						1 A
GO:2000733 regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation						1 A
GO:2000750 negative regulation of establishment or maintenance of bipolar cell polarity regulating cell shape						1 D, 1 A

File Stats

Term counts for the old and new files
Ontology	Old file	New file	Change
molecular function	9023 9023 (100.0%) defined	9023 9023 (100.0%) defined	0
cellular component	2854 2854 (100.0%) defined	2855 2855 (100.0%) defined	+1
biological process	20896 20896 (100.0%) defined	20983 20982 (100.0%) defined	+87
Obsolete	1559 (4.5% of total)	1559 (4.5% of total)	0 (0.0%)
Totals	32773 32773 (100.0%) defined 34332 inc. obsoletes	32861 32860 (100.0%) defined 34420 inc. obsoletes	+88 (+0.3%)