These files are results of gp2protein report script.

<Types of files>

file_no_gp.mod: 
 Rows in gp2protein.mod file with no gene products in AmiGO.
 Possibility:
   these rows have no annotations in gene_association file.

 *Note: the GA file is the version after filtering (not the submitted
        version, meaning all IEAs are out)

file_no_seq.mod:
 Possibilities:
 - sync issue of uniprot ftp files: uniprot_id in column 2 has not yet
   released to uniprot ftp site or stanford has not downloaded the
   newest version yet (we check a couple of times a week for newer uniprot
   files)
 - flaw in sequence parsing/loading of go-db-perl software
 - invalid uniprot id in column 2 of gp2protein

gp_no_seq.mod:
 Possibilities:
 - no mapping provided in gp2protein file
 - flaw in sequence parsing/loading of go-db-perl software
 - invalid uniprot id in column 2 of gp2protein

Questions? Please contact go-admin@genome.stanford.edu