# HISTORY 07 May 2016: Updated by: TOUCHUP-v1.18 14 Mar 2016: Updated by: TOUCHUP-v1.12 24 Mar 2016: Updated by: TOUCHUP-v1.15 # molecular_function # cellular_component 20110111: Eukaryota_PTN000052028 is found in cytosolic small ribosomal subunit (GO:0022627) # biological_process 20110111: Eukaryota_PTN000052028 participates in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462) # WARNINGS - THE FOLLOWING HAVE BEEN REMOVED FOR THE REASONS NOTED # NOTES Fast-pass curation of PTHR10496 (40s Ribosomal protein S24) family MF: The only MF annotation that exists is to "translocation initiation factor binding" (for human RPS24), which is not propagated at the moment. CC: Propagate GO:0022627, cytosolic small ribosomal subunit, to AN1 based on widespread annotations. Propagate GO:0005730 nucleolus to AN1 based on annotations below. Spombe GO:0005730 nucleolus TAIR AT3G04920 nucleolus Human RPA24 nuckeus Ignore most of the HTP annotation. TAIR AT5G28060 cell wall and membrane, annotations are HTP TAIR AT3G04920 plasma membrane, plasma membrane-enriched fractions HTP TAIR AT3G04920 chloroplast, mass spectrometry HTP Dicty extracellular space, annotation are HTP SGD mitochondrion, high purified yeast mitochondria, MS etc, HTP BP: -Propagate the following terms to AN1: GO:0006414translational elongation GO:0042274ribosomal small subunit biogenesis GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000462 is a child of GO:0006364 rRNA processing, so propagate to GO:0000462 covers GO:0006364. -Ignore the worm development terms. LN, 10 Jan 2011 # REFERENCE Annotation inferences using phylogenetic trees The goal of the GO Reference Genome Project, described in PMID 19578431, is to provide accurate, complete and consistent GO annotations for all genes in twelve model organism genomes. To this end, GO curators are annotating evolutionary trees from the PANTHER database with GO terms describing molecular function, biological process and cellular component. GO terms based on experimental data from the scientific literature are used to annotate ancestral genes in the phylogenetic tree by sequence similarity (ISS), and unannotated descendants of these ancestral genes are inferred to have inherited these same GO annotations by descent. The annotations are done using a tool called PAINT (Phylogenetic Annotation and INference Tool).