GO Monthly Release Notes for August 2007 ======================== Generated on Sun Sep 23 15:49:48 2007 Files used: gene_ontology.obo OLD: version 4.288, 27:07:2007 19:30 NEW: version 4.309, 30:08:2007 19:30 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (77 new terms) GO:0000469 GO:0006139 SGD D cleavages during rRNA processing GO:0006996 GO:0000477 GO:0006139 SGD D generation of mature 5'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0006996 GO:0010438 GO:0006950 TAIR D 1711557 cellular response to sulfur starvation GO:0007154 GO:0009605 GO:0010439 GO:0005975 TAIR D regulation of glucosinolate biosynthetic process GO:0009058 GO:0019748 GO:0050789 GO:0010440 GO:0007275 TAIR D stomatal lineage progression GO:0010441 GO:0007275 TAIR D guard cell development GO:0009653 GO:0030154 GO:0010442 GO:0007275 TAIR D guard cell morphogenesis GO:0009653 GO:0016043 GO:0030154 GO:0010443 GO:0007049 TAIR D meristemoid mother cell division GO:0007275 GO:0010444 GO:0007275 TAIR D guard mother cell differentiation GO:0030154 GO:0010446 GO:0009628 TAIR D response to alkalinity GO:0010447 GO:0009628 TAIR D response to acidity GO:0032509 GO:0006810 MAH D endosome transport via multivesicular body sorting pathway GO:0016043 GO:0032510 GO:0006810 MAH D endosome to lysosome transport via multivesicular body sorting pathway GO:0016043 GO:0032511 GO:0006810 MAH D late endosome to vacuole transport via multivesicular body sorting pathway GO:0016043 GO:0032512 GO:0008150 MAH D regulation of protein phosphatase type 2B activity GO:0032513 GO:0008150 MAH D negative regulation of protein phosphatase type 2B activity GO:0032514 GO:0008150 MAH D positive regulation of protein phosphatase type 2B activity GO:0032515 GO:0008150 MAH D negative regulation of phosphoprotein phosphatase activity GO:0032516 GO:0008150 MAH D positive regulation of phosphoprotein phosphatase activity GO:0032524 GO:0006810 MAH D nutrient export GO:0032525 GO:0009790 MAH D somite rostral/caudal axis specification GO:0032526 GO:0007154 MAH D response to retinoic acid GO:0009605 GO:0032527 GO:0015031 MAH D protein exit from endoplasmic reticulum GO:0016043 GO:0032528 GO:0009653 MAH D microvillus organization and biogenesis GO:0016043 GO:0032529 GO:0009653 MAH D follicle cell microvillus organization and biogenesis GO:0016043 GO:0032530 GO:0009653 MAH D regulation of microvillus organization and biogenesis GO:0016043 GO:0050789 GO:0032531 GO:0009653 MAH D regulation of follicle cell microvillus organization and biogenesis GO:0016043 GO:0050789 GO:0032532 GO:0009653 MAH D regulation of microvillus length GO:0016043 GO:0050789 GO:0032533 GO:0009653 MAH D regulation of follicle cell microvillus length GO:0016043 GO:0050789 GO:0032534 GO:0009653 MAH D regulation of microvillus biogenesis GO:0016043 GO:0050789 GO:0032535 GO:0008150 MAH D regulation of cellular component size GO:0032536 GO:0008150 MAH D regulation of cell projection size GO:0032537 GO:0007610 MAH D 1711143 host-seeking behavior GO:0032538 GO:0000003 MAH D 1711143 regulation of host-seeking behavior GO:0007610 GO:0050789 GO:0032539 GO:0000003 MAH D 1711143 negative regulation of host-seeking behavior GO:0007610 GO:0050789 GO:0032540 GO:0000003 MAH D 1711143 positive regulation of host-seeking behavior GO:0007610 GO:0050789 GO:0032543 GO:0006412 MAH D 1778552 mitochondrial translation GO:0007005 GO:0032544 GO:0006412 MAH D 1778552 plastid translation GO:0006996 GO:0032568 GO:0006350 MAH D 1590000 general transcription from RNA polymerase II promoter GO:0032569 GO:0006350 MAH D 1590000 specific transcription from RNA polymerase II promoter GO:0032570 GO:0009719 MAH D response to progesterone stimulus GO:0032571 GO:0007154 MAH D response to vitamin K GO:0009605 GO:0032572 GO:0007154 MAH D response to menaquinone GO:0009605 GO:0032573 GO:0007154 MAH D response to phylloquinone GO:0009605 GO:0033561 GO:0008150 MAH D regulation of water loss via skin GO:0033562 GO:0006139 MAH D small RNA-mediated cotranscriptional gene silencing GO:0033563 GO:0007275 MAH D dorsal/ventral axon guidance GO:0009653 GO:0016043 GO:0030154 GO:0033564 GO:0007275 MAH D anterior/posterior axon guidance GO:0009653 GO:0016043 GO:0030154 GO:0033566 GO:0008150 MAH D gamma-tubulin complex localization GO:0033567 GO:0006259 MAH D DNA replication, Okazaki fragment processing GO:0033571 GO:0006811 MAH D lactoferrin transport GO:0015031 GO:0033572 GO:0006811 MAH D transferrin transport GO:0015031 GO:0033574 GO:0009719 MAH D response to testosterone stimulus GO:0033575 GO:0006464 MAH D protein amino acid glycosylation at cell surface GO:0009058 GO:0033576 GO:0006464 MAH D protein amino acid glycosylation in cytosol GO:0009058 GO:0033577 GO:0006464 MAH D protein amino acid glycosylation in endoplasmic reticulum GO:0009058 GO:0033578 GO:0006464 MAH D protein amino acid glycosylation in Golgi GO:0009058 GO:0033579 GO:0006464 MAH D protein amino acid galactosylation in endoplasmic reticulum GO:0009058 GO:0033580 GO:0006464 MAH D protein amino acid galactosylation at cell surface GO:0009058 GO:0033581 GO:0006464 MAH D protein amino acid galactosylation in Golgi GO:0009058 GO:0033582 GO:0006464 MAH D protein amino acid galactosylation in cytosol GO:0009058 GO:0033584 GO:0006519 MAH D tyrosine biosynthetic process from chorismate via L-arogenate GO:0009058 GO:0033585 GO:0006519 MAH D L-phenylalanine biosynthetic process from chorismate via phenylpyruvate GO:0009058 GO:0033586 GO:0006519 MAH D L-phenylalanine biosynthetic process from chorismate via L-arogenate GO:0009058 GO:0033587 GO:0008152 MAH D shikimate biosynthetic process GO:0033590 GO:0007154 MAH D response to cobalamin GO:0009605 GO:0033591 GO:0007154 MAH D response to L-ascorbic acid GO:0009605 GO:0033594 GO:0008150 MAH D response to hydroxyisoflavone GO:0033595 GO:0008150 MAH D response to genistein GO:0033598 GO:0008283 MAH D mammary gland epithelial cell proliferation GO:0033599 GO:0008283 MAH D regulation of mammary gland epithelial cell proliferation GO:0050789 GO:0033600 GO:0008283 MAH D negative regulation of mammary gland epithelial cell proliferation GO:0050789 GO:0033601 GO:0008283 MAH D positive regulation of mammary gland epithelial cell proliferation GO:0050789 GO:0033602 GO:0006810 MAH D negative regulation of dopamine secretion GO:0007267 GO:0016043 GO:0050789 GO:0033603 GO:0006810 MAH D positive regulation of dopamine secretion GO:0007267 GO:0016043 GO:0050789 GO:0033604 GO:0006810 MAH D negative regulation of catecholamine secretion GO:0007267 GO:0016043 GO:0050789 GO:0033605 GO:0006810 MAH D positive regulation of catecholamine secretion GO:0007267 GO:0016043 GO:0050789 Term name changes in biological_process ontology GO:0000447: endonucleolytic cleavage between SSU-rRNA and 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) --> endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000448: cleavage between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) --> cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0001542: ovulation (sensu Mammalia) --> ovulation from ovarian follicle GO:0001744: optic placode formation (sensu Endopterygota) --> optic lobe placode formation GO:0001748: optic placode development (sensu Endopterygota) --> optic lobe placode development GO:0007297: follicle cell migration (sensu Insecta) --> ovarian follicle cell migration GO:0007298: border follicle cell migration (sensu Insecta) --> border follicle cell migration GO:0007299: follicle cell adhesion (sensu Insecta) --> ovarian follicle cell adhesion GO:0008069: dorsal/ventral axis determination, follicular epithelium (sensu Insecta) --> dorsal/ventral axis determination, ovarian follicular epithelium GO:0008070: maternal determination of dorsal/ventral axis, follicular epithelium, germ-line encoded --> maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded GO:0008071: maternal determination of dorsal/ventral axis, follicular epithelium, soma encoded (sensu Insecta) --> maternal determination of dorsal/ventral axis, ovarian follicular epithelium, soma encoded GO:0021512: spinal cord anterior-posterior patterning --> spinal cord anterior/posterior patterning GO:0021513: spinal cord dorsal-ventral patterning --> spinal cord dorsal/ventral patterning GO:0021797: forebrain anterior-posterior pattern formation --> forebrain anterior/posterior pattern formation GO:0021798: forebrain dorsal-ventral pattern formation --> forebrain dorsal/ventral pattern formation GO:0022002: wnt receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate --> Wnt receptor signaling involved in negative regulation of anterior neural cell fate of the neural plate GO:0030707: ovarian follicle cell development (sensu Insecta) --> ovarian follicle cell development GO:0030713: stalk formation (sensu Insecta) --> ovarian follicle cell stalk formation GO:0042780: tRNA 3'-processing --> tRNA 3'-end processing GO:0060113: inner ear receptor cell differenation --> inner ear receptor cell differentiation New term merges in biological_process ontology GO:0000490 has been merged into GO:0000448, cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0009096 has been merged into GO:0000162, tryptophan biosynthetic process GO:0009993 has been merged into GO:0048477, oogenesis GO:0016089 has been merged into GO:0009073, aromatic amino acid family biosynthetic process GO:0019274 has been merged into GO:0009094, L-phenylalanine biosynthetic process GO:0019275 has been merged into GO:0009094, L-phenylalanine biosynthetic process GO:0019291 has been merged into GO:0019293, tyrosine biosynthetic process, by oxidation of phenylalanine GO:0043339 has been merged into GO:0045196, establishment and/or maintenance of neuroblast polarity GO:0043340 has been merged into GO:0045200, establishment of neuroblast polarity GO:0043341 has been merged into GO:0045201, maintenance of neuroblast polarity GO:0043342 has been merged into GO:0045196, establishment and/or maintenance of neuroblast polarity GO:0043343 has been merged into GO:0045200, establishment of neuroblast polarity GO:0043344 has been merged into GO:0045201, maintenance of neuroblast polarity GO:0043349 has been merged into GO:0007405, neuroblast proliferation GO:0043350 has been merged into GO:0007405, neuroblast proliferation GO:0043351 has been merged into GO:0007407, neuroblast activation GO:0043352 has been merged into GO:0007407, neuroblast activation GO:0043359 has been merged into GO:0008347, glial cell migration GO:0043360 has been merged into GO:0010001, glial cell differentiation GO:0043361 has been merged into GO:0007403, glial cell fate determination Term movements in biological_process ontology: Terms movements under GO Slim term 'DNA metabolic process ; GO:0006259' + GO:0000723, telomere maintenance + GO:0007004, telomere maintenance via telomerase + GO:0016233, telomere capping + GO:0031627, telomeric loop formation + GO:0031848, protection from non-homologous end joining at telomere + GO:0032200, telomere organization and biogenesis + GO:0032202, telomere assembly + GO:0032203, telomere formation via telomerase + GO:0032204, regulation of telomere maintenance + GO:0032205, negative regulation of telomere maintenance + GO:0032206, positive regulation of telomere maintenance + GO:0032210, regulation of telomere maintenance via telomerase + GO:0032211, negative regulation of telomere maintenance via telomerase + GO:0032212, positive regulation of telomere maintenance via telomerase + GO:0032213, regulation of telomere maintenance via semi-conservative replication + GO:0032214, negative regulation of telomere maintenance via semi-conservative replication + GO:0032215, positive regulation of telomere maintenance via semi-conservative replication + GO:0043247, telomere maintenance in response to DNA damage Terms movements under GO Slim term 'amino acid and derivative metabolic process ; GO:0006519' - GO:0009239, enterobactin biosynthetic process - GO:0009423, chorismate biosynthetic process - GO:0009712, catechol metabolic process - GO:0009713, catechol biosynthetic process - GO:0018918, gallate metabolic process - GO:0019289, rhizobactin 1021 biosynthetic process - GO:0019328, anaerobic gallate catabolic process - GO:0019396, gallate catabolic process - GO:0019397, gallate catabolic process via 2-pyrone-4,6-dicarboxylate - GO:0019398, gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate - GO:0019489, methylgallate metabolic process - GO:0019537, vibriobactin biosynthetic process - GO:0019540, siderophore biosynthetic process from catechol - GO:0019598, (R)-mandelate catabolic process to catechol - GO:0019604, toluene oxidation to catechol - GO:0019614, catechol catabolic process - GO:0019615, catechol catabolic process, ortho-cleavage - GO:0019616, catechol catabolic process, meta-cleavage - GO:0019617, protocatechuate catabolic process, meta-cleavage - GO:0019618, protocatechuate catabolic process, ortho-cleavage - GO:0019619, protocatechuate catabolic process - GO:0031189, siderophore biosynthetic process from catechol, peptide formation - GO:0031190, siderophore biosynthetic process from catechol, peptide modification - GO:0031191, enterobactin biosynthetic process, peptide formation - GO:0031192, enterobactin biosynthetic process, peptide modification - GO:0031193, rhizobactin 1021 biosynthetic process, peptide formation - GO:0031194, rhizobactin 1021 biosynthetic process, peptide modification - GO:0031195, vibriobactin biosynthetic process, peptide formation - GO:0031196, vibriobactin biosynthetic process, peptide modification - GO:0042195, aerobic gallate catabolic process - GO:0046235, gallate biosynthetic process - GO:0046276, methylgallate catabolic process - GO:0046277, methylgallate biosynthetic process - GO:0046278, protocatechuate metabolic process - GO:0046279, protocatechuate biosynthetic process Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996' + GO:0042793, transcription from plastid promoter + GO:0042794, rRNA transcription from plastid promoter Terms movements under GO Slim term 'mitochondrion organization and biogenesis ; GO:0007005' + GO:0006390, transcription from mitochondrial promoter + GO:0006391, transcription initiation from mitochondrial promoter + GO:0006392, RNA elongation from mitochondrial promoter + GO:0006393, RNA transcription termination from mitochondrial promoter + GO:0042792, rRNA transcription from mitochondrial promoter Terms movements under GO Slim term 'metabolic process ; GO:0008152' + GO:0009712, catechol metabolic process + GO:0018918, gallate metabolic process + GO:0019489, methylgallate metabolic process + GO:0019604, toluene oxidation to catechol + GO:0046278, protocatechuate metabolic process - GO:0046937, phytochelatin metabolic process Terms movements under GO Slim term 'anatomical structure morphogenesis ; GO:0009653' - GO:0010235, guard mother cell cytokinesis + GO:0030713, ovarian follicle cell stalk formation Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043' - GO:0006391, transcription initiation from mitochondrial promoter - GO:0006393, RNA transcription termination from mitochondrial promoter + GO:0016998, cell wall catabolic process + GO:0030713, ovarian follicle cell stalk formation + GO:0032219, cell wall catabolic process during cytogamy + GO:0051672, cell wall peptidoglycan catabolic process in another organism Terms movements under GO Slim term 'secondary metabolic process ; GO:0019748' - GO:0006571, tyrosine biosynthetic process - GO:0009239, enterobactin biosynthetic process - GO:0009423, chorismate biosynthetic process - GO:0009712, catechol metabolic process - GO:0009713, catechol biosynthetic process - GO:0018918, gallate metabolic process - GO:0019289, rhizobactin 1021 biosynthetic process - GO:0019292, tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate - GO:0019293, tyrosine biosynthetic process, by oxidation of phenylalanine - GO:0019328, anaerobic gallate catabolic process - GO:0019396, gallate catabolic process - GO:0019397, gallate catabolic process via 2-pyrone-4,6-dicarboxylate - GO:0019398, gallate catabolic process via 4-carboxy-2-hydroxhexa-2,3-dienedioate - GO:0019444, tryptophan catabolic process to catechol - GO:0019489, methylgallate metabolic process - GO:0019537, vibriobactin biosynthetic process - GO:0019540, siderophore biosynthetic process from catechol - GO:0019598, (R)-mandelate catabolic process to catechol - GO:0019604, toluene oxidation to catechol - GO:0019614, catechol catabolic process - GO:0019615, catechol catabolic process, ortho-cleavage - GO:0019616, catechol catabolic process, meta-cleavage - GO:0019617, protocatechuate catabolic process, meta-cleavage - GO:0019618, protocatechuate catabolic process, ortho-cleavage - GO:0019619, protocatechuate catabolic process - GO:0031189, siderophore biosynthetic process from catechol, peptide formation - GO:0031190, siderophore biosynthetic process from catechol, peptide modification - GO:0031191, enterobactin biosynthetic process, peptide formation - GO:0031192, enterobactin biosynthetic process, peptide modification - GO:0031193, rhizobactin 1021 biosynthetic process, peptide formation - GO:0031194, rhizobactin 1021 biosynthetic process, peptide modification - GO:0031195, vibriobactin biosynthetic process, peptide formation - GO:0031196, vibriobactin biosynthetic process, peptide modification - GO:0042195, aerobic gallate catabolic process - GO:0046235, gallate biosynthetic process - GO:0046276, methylgallate catabolic process - GO:0046277, methylgallate biosynthetic process - GO:0046278, protocatechuate metabolic process - GO:0046279, protocatechuate biosynthetic process + GO:0046937, phytochelatin metabolic process + GO:0046938, phytochelatin biosynthetic process New terms in cellular_component ontology (14 new terms) GO:0002111 GO:0005634 MGI D 1775791 BRAC2-BRAF35 complex GO:0043234 GO:0010445 GO:0005654 TAIR D nuclear dicing body GO:0032517 GO:0005622 MAH D SOD1-calcineurin complex GO:0043234 GO:0032541 GO:0005783 MAH D cortical endoplasmic reticulum GO:0032545 GO:0005634 MAH D CURI complex GO:0043234 GO:0033565 GO:0005768 MAH D ESCRT-0 complex GO:0043234 GO:0033573 GO:0005886 MAH D high affinity iron permease complex GO:0043234 GO:0033583 GO:0005886 MAH D 1762858 rhabdomere membrane GO:0033588 GO:0005622 MAH D Elongator holoenzyme complex GO:0043234 GO:0033589 GO:0005622 MAH D Elongator core complex GO:0043234 GO:0033593 GO:0005622 MAH D BRCA2-MAGE-D1 complex GO:0043234 GO:0033596 GO:0005829 MAH D TSC1-TSC2 complex GO:0043234 GO:0033597 GO:0005634 MAH D mitotic checkpoint complex GO:0043234 GO:0033607 GO:0005622 MAH D SOD1-Bcl-2 complex GO:0043234 Term name changes in cellular_component ontology GO:0009380: excinuclease ABC complex --> excinuclease repair complex Term movements in cellular_component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0009380, excinuclease repair complex - GO:0016027, inaD signaling complex - GO:0016028, rhabdomere - GO:0016029, subrhabdomeral cisterna Terms movements under GO Slim term 'cell ; GO:0005623' + GO:0016028, rhabdomere Terms movements under GO Slim term 'nucleus ; GO:0005634' + GO:0031510, SUMO activating enzyme complex Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0009328, phenylalanine-tRNA ligase complex Terms movements under GO Slim term 'plasma membrane ; GO:0005886' - GO:0016028, rhabdomere Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' - GO:0009328, phenylalanine-tRNA ligase complex - GO:0009380, excinuclease repair complex - GO:0031510, SUMO activating enzyme complex Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043' - GO:0033551, monopolin complex Terms movements under GO Slim term 'organelle ; GO:0043226' - GO:0016027, inaD signaling complex - GO:0016028, rhabdomere - GO:0016029, subrhabdomeral cisterna Terms movements under GO Slim term 'protein complex ; GO:0043234' + GO:0009328, phenylalanine-tRNA ligase complex + GO:0009380, excinuclease repair complex + GO:0031510, SUMO activating enzyme complex New terms in molecular_function ontology (61 new terms) GO:0010435 GO:0003824 TAIR D 1711557 3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid (OPC-8:0) CoA ligase activity GO:0010436 GO:0003824 TAIR D 1711557 carotenoid dioxygenase activity GO:0010437 GO:0003824 TAIR D 1711557 9,10 (9', 10')-carotenoid-cleaving dioxygenase activity GO:0032518 GO:0005215 MAH D 1723526 amino acid-exporting ATPase activity GO:0016787 GO:0032519 GO:0005215 MAH D 1723526 cysteine-exporting ATPase activity GO:0016787 GO:0032520 GO:0005215 MAH D amino acid-importing ATPase activity GO:0016787 GO:0032521 GO:0005215 MAH D D-methionine-exporting ATPase activity GO:0016787 GO:0032522 GO:0005215 MAH D D-methionine-importing ATPase activity GO:0016787 GO:0032523 GO:0005215 MAH D silicon efflux transmembrane transporter activity GO:0032542 GO:0003824 MAH D sulfiredoxin activity GO:0032546 GO:0005488 MAH D 1774986 deoxyribonucleoside binding GO:0032547 GO:0005488 MAH D 1774986 purine deoxyribonucleoside binding GO:0032548 GO:0005488 MAH D 1774986 pyrimidine deoxyribonucleoside binding GO:0032549 GO:0005488 MAH D 1774986 ribonucleoside binding GO:0032550 GO:0005488 MAH D 1774986 purine ribonucleoside binding GO:0032551 GO:0005488 MAH D 1774986 pyrimidine ribonucleoside binding GO:0032552 GO:0000166 MAH D 1774986 deoxyribonucleotide binding GO:0032553 GO:0000166 MAH D 1774986 ribonucleotide binding GO:0032554 GO:0000166 MAH D 1774986 purine deoxyribonucleotide binding GO:0032555 GO:0000166 MAH D 1774986 purine ribonucleotide binding GO:0032556 GO:0000166 MAH D 1774986 pyrimidine deoxyribonucleotide binding GO:0032557 GO:0000166 MAH D 1774986 pyrimidine ribonucleotide binding GO:0032558 GO:0000166 MAH D 1774986 adenyl deoxyribonucleotide binding GO:0032559 GO:0000166 MAH D 1774986 adenyl ribonucleotide binding GO:0032560 GO:0000166 MAH D 1774986 guanyl deoxyribonucleotide binding GO:0032561 GO:0000166 MAH D 1774986 guanyl ribonucleotide binding GO:0032562 GO:0000166 MAH D 1774986 dAMP binding GO:0032563 GO:0000166 MAH D 1774986 dADP binding GO:0032564 GO:0000166 MAH D 1774986 dATP binding GO:0032565 GO:0000166 MAH D 1774986 dGMP binding GO:0032566 GO:0000166 MAH D 1774986 dGDP binding GO:0032567 GO:0000166 MAH D 1774986 dGTP binding GO:0032574 GO:0003824 MAH D 5'-3' RNA helicase activity GO:0032575 GO:0016787 MAH D ATP-dependent 5'-3' RNA helicase activity GO:0033560 GO:0003824 MAH D folate reductase activity GO:0033568 GO:0004872 MAH D lactoferrin receptor activity GO:0033569 GO:0005215 MAH D lactoferrin transmembrane transporter activity GO:0033570 GO:0005215 MAH D transferrin transmembrane transporter activity GO:0033592 GO:0003723 MAH D RNA strand annealing activity GO:0043876 GO:0003824 JL D D-threonine aldolase activity GO:0043877 GO:0003824 JL D galactosamine-6-phosphate isomerase activity GO:0043878 GO:0003824 JL D glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity GO:0043879 GO:0005215 JL D glycolate transmembrane transporter activity GO:0043880 GO:0003824 JL D crotonyl-CoA reductase activity GO:0043881 GO:0003824 JL D mesaconyl-CoA hydratase activity GO:0043882 GO:0005215 JL D malate:sodium symporter activity GO:0043883 GO:0003824 JL D malolactic enzyme activity GO:0043884 GO:0016740 JL D CO-methylating acetyl-CoA synthase activity GO:0043885 GO:0003824 JL D carbon-monoxide dehydrogenase (ferredoxin) activity GO:0043886 GO:0005198 JL D structural constituent of carboxysome GO:0043887 GO:0005215 JL D melibiose:sodium symporter activity GO:0043888 GO:0016740 JL D (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase activity GO:0043889 GO:0016740 JL D (S)-3-O-geranylgeranylglyceryl phosphate activity GO:0043890 GO:0016787 JL D N-acetylgalactosamine-6-sulfatase activity GO:0043891 GO:0003824 JL D glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity GO:0043892 GO:0003824 JL D methylglyoxal reductase (NADPH-dependent) activity GO:0043893 GO:0005215 JL D acetate:cation symporter activity GO:0043894 GO:0016740 JL D protein acetyltransferase activity GO:0043895 GO:0016740 JL D cyclomaltodextrin glucanotransferase activity GO:0043896 GO:0016787 JL D glucan 1,6-alpha-glucosidase activity GO:0043897 GO:0016787 JL D glucan 1,4-alpha-maltohydrolase activity Term name changes in molecular_function ontology GO:0015638: microcin uptake permease activity - obsolete this? --> microcin uptake permease activity GO:0017091: AU-specific RNA binding --> AU-rich element binding GO:0019170: D-lactaldehyde dehydrogenase activity --> methylglyoxal reductase (NADH-dependent) activity GO:0032931: histone lysine N-methyltransferase activity (H3-K56 specific) --> histone lysine N-acetyltransferase activity (H3-K56 specific) GO:0043365: [formate-C-acetyltransferase]-activating enzyme --> [formate-C-acetyltransferase]-activating enzyme activity GO:0050519: holo-[acyl-carrier-protein] synthase activity --> holo-citrate lyase synthase activity New definitions for molecular_function ontology terms (2 new definitions) GO:0008732, L-allo-threonine aldolase activity GO:0016799, hydrolase activity, hydrolyzing N-glycosyl compounds New term merges in molecular_function ontology GO:0008264 has been merged into GO:0050567, glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity GO:0010010 has been merged into GO:0047130, saccharopine dehydrogenase (NADP+, L-lysine-forming) activity GO:0017068 has been merged into GO:0050567, glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity GO:0018540 has been merged into GO:0050625, 2-hydroxy-1,4-benzoquinone reductase activity GO:0018840 has been merged into GO:0047466, 2-chloro-4-carboxymethylenebut-2-en-1,4-olide isomerase activity GO:0030065 has been merged into GO:0050587, chlorite O2-lyase activity GO:0030764 has been merged into GO:0030752, 5-hydroxyfuranocoumarin 5-O-methyltransferase activity GO:0045432 has been merged into GO:0050589, leucocyanidin oxygenase activity GO:0050475 has been merged into GO:0050474, (S)-norcoclaurine synthase activity Term movements in molecular_function ontology: Terms movements under GO Slim term 'enzyme regulator activity ; GO:0030234' + GO:0030337, DNA polymerase processivity factor activity SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1067017 Fixed 18S rRNA maturation- synonym for processing of 20S pre-rRNA 1072446 Fixed New obol missing relationships 1105967 Accepted galactosylation 2 things 1110735 None additional parents?IMP biosynthesis/GMP biosynthesis 1450780 Fixed mechanosensitive ion channels (GO function) 1488957 Wont Fix photo/skotomorphogenesis 1494271 Later term merge? protein palmitoylation/protein amino acid 1566692 Fixed rRNA terms and Defs 1711527 Accepted NTR: bract development etc (3 terms) 1711561 None NTR: histone H3-K27 methylation 1716772 Accepted NTR: OPC-8:0 CoA ligase activity 1723608 Accepted ntr: methionine ABC transporter terms 1727804 Fixed change def GO:0032778 1728089 Accepted NTR: Elongator complex 1729099 Fixed Change wording of Comments 1732986 Accepted synonyms request 1744395 Accepted children of 'response to pH'? 1744496 Accepted NTR: nuclear dicing body 1754722 Fixed aromatic amino acid biosynthesis 1757389 Works For Me term merge intermembrane transport 1759080 Accepted ntr:cotranscriptional gene silencing 1759812 Accepted NTR: D/V and A/P axon guidance terms 1759980 Accepted NTR: Vps27p-Hse1p complex 1760180 Accepted ntr: gamma tubulin complex localization 1760411 Fixed query parent:DNA polymerase processivity factor activity 1760422 Fixed Okazaki fragment processing 1760484 Fixed Move GO:31510 and GO:9328 out of 'unlocalized' branch 1760557 Accepted ntr: transferrin/lactoferrin terms 1760913 Works For Me query uridine kinase activity 1762047 Fixed GO:31389 Rad17 RFC-like complex-incorrect 1764035 Accepted question regarding Request 1739177 (obsolete GO:0015997) 1765033 Accepted ntr: high affinity iron permease complex 1765583 Accepted response to testosterone 1765796 Accepted Add synonym for GO:42272 1766333 Accepted new synonym request for uridylate kinase activity GO:0009041 1766428 Fixed GO:31261 - typo in gene name in definition 1766694 Accepted NTR: transcription elongation factor core complex 1767321 Accepted response to vitamin B12 1767388 Accepted def for GO:0000472 (a rRNA processing term) 1768303 Fixed MP: age-dependent telomere shortening 1768385 Accepted 2 terms seem same MVB pathway 1768428 Fixed ntr: ESCRT-0 1768451 Accepted ntr: RNA annealing activity 1768560 Accepted response to vitamin C 1769433 Fixed TVP: cotranslational protein targeting to membrane 1769526 Accepted BRCA2-MAGED1 complex 1769534 Accepted rg:response to genistein 1769547 Accepted 'negative regulation of mammary epithelial cell proliferatio 1770018 Accepted refgen: tsc1-tsc2 protein complex 1770519 Accepted NTR: mitotic checkpoint complex (MCC) 1770992 Accepted + & - regulation of dopamine secretion 1771167 Rejected RG:SOD1-CCS protein complex 1771169 Accepted RG:SOD1-BCL2 Complex 1771174 Rejected RG:protein carbonylation 1771261 Accepted NTR: carotenoid dioxygenase activity 1771582 Accepted AU-specific RNA binding GO:0017091 1771661 Accepted RG: regulation of protein phosphatase type 2B activity 1771673 Accepted RG: SOD1-Calcineurin complex 1771688 Accepted somite rostrocaudal polarity 1771697 Works For Me incomplete def? proteolysis 1771959 Accepted Synonym request for GO:4557 1771967 Accepted response to retinoic acid 1771980 Accepted ntr: Protein exit from ER 1771985 Accepted lots of new synonyms 1773238 Accepted Updating 'stomatal complex development' 1773245 Accepted NTR: cellular response to sulfur starvation 1773281 Accepted NTR: regulation of glucosinolate biosynthetic process 1773295 Accepted NTR: UTP:glucuronate-1-phosphate uridylyltransferase activit 1773312 Accepted NTR: UTP:arabinose-1-phosphate uridylyltransferase activity 1773380 Accepted new term: silicon efflux transporter and nutrient export 1773972 Accepted NTRs: microvillus related terms 1774284 Accepted more new synonyms 1774663 Accepted synonym: endosome enlargement 1774788 Accepted ntr: nucleoside-triphosphate—adenylate kinase activity 1775055 None Parents of GO:0016887 ! ATPase activity 1776517 Fixed histone lysine N-methyltransferase activity (H3-K56 specific 1776561 Accepted a few more new synonyms 1778116 Accepted NTR: cortical endoplasmic reticulum 1778236 Accepted ntr: sulfiredoxin activity 1778442 Fixed Missing P: translation 1778468 Accepted MP: phytochelatin biosynthetic process 1778477 Works For Me possible MP? snoRNA metabolic process 1778526 Accepted MP: telomere maintenence/DNA met? 1778890 Accepted synonym request GO:4845 1779273 Accepted add syn: to riboflavin synthase 1779864 Accepted ntr: CURI coomplex 1782508 Accepted response to progesterone stimulus 1783200 Accepted synonyms for C-3 sterol dehydrogenase (C-4 sterol decarboxyl 1783500 Accepted response to vitamin K 1783706 Accepted ntr: ATP-dep 5' to 3' RNA helicase activity 780275 Fixed RNA processing Statistics: biological_process: 14375 terms, 98.9% defined (14216 terms defined) cellular_component: 2121 terms, 100.0% defined (2121 terms defined) molecular_function: 8434 terms, 95.3% defined (8041 terms defined) Total: 24930 terms, 97.8% defined (24378 terms defined) Term errors none