GO Monthly Release Notes for May 2006 ======================== Generated on Thu Jun 1 15:54:09 2006 Files used: gene_ontology.obo OLD: version 3.1441, 28:04:2006 18:11 NEW: version 3.1479, 31:05:2006 17:24 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (60 new terms) GO:0002051 GO:0007582 MGI D osteoblast fate commitment GO:0030154 GO:0002052 GO:0007275 MGI D positive regulation of neuroblast proliferation GO:0008283 GO:0050789 GO:0002053 GO:0008283 MGI D positive regulation of mesenchymal cell proliferation GO:0050789 GO:0002062 GO:0030154 MGI D chondrocyte differentiation GO:0002063 GO:0030154 MGI D chondrocyte development GO:0032053 GO:0006996 MAH D 1479905 basal body organization and biogenesis GO:0032054 GO:0006996 MAH D 1479905 basal body duplication GO:0032055 GO:0006412 MAH D 1481063 negative regulation of translation in response to stress GO:0006950 GO:0050789 GO:0032056 GO:0006412 MAH D 1481063 positive regulation of translation in response to stress GO:0006950 GO:0050789 GO:0032057 GO:0006412 MAH D 1481063 negative regulation of translation initiation in response to stress GO:0006950 GO:0050789 GO:0032058 GO:0006412 MAH D 1481063 positive regulation of translation initiation in response to stress GO:0006950 GO:0050789 GO:0032060 GO:0009653 MAH D 1478615 bleb formation GO:0016043 GO:0032061 GO:0006412 MAH D 1481063 negative regulation of translation in response to osmotic stress GO:0006950 GO:0009628 GO:0050789 GO:0032062 GO:0006412 MAH D 1481063 positive regulation of translation in response to osmotic stress GO:0006950 GO:0009628 GO:0050789 GO:0032063 GO:0006412 MAH D 1481063 negative regulation of translation initiation in response to osmotic stress GO:0006950 GO:0009628 GO:0050789 GO:0032064 GO:0006412 MAH D 1481063 positive regulation of translation initiation in response to osmotic stress GO:0006950 GO:0009628 GO:0050789 GO:0032065 GO:0007582 MAH D 1475597 cortical protein anchoring GO:0032066 GO:0006810 MAH D 1460050 nucleolus to nucleoplasm transport GO:0016043 GO:0043643 GO:0008152 JL D 1475410 tetracycline metabolism GO:0043644 GO:0009058 JL D 1475410 tetracycline biosynthesis GO:0043645 GO:0008152 JL D 1475410 cephalosporin metabolism GO:0043646 GO:0009058 JL D 1475410 cephalosporin biosynthesis GO:0043647 GO:0005975 JL D 1469441 myo-inositol phosphate metabolism GO:0043648 GO:0008152 JL D 1469441 dicarboxylic acid metabolism GO:0043649 GO:0009056 JL D 1469441 dicarboxylic acid catabolism GO:0043650 GO:0009058 JL D 1469441 dicarboxylic acid biosynthesis GO:0043651 GO:0006629 JL D linoleic acid metabolism GO:0043652 GO:0006810 JL D 1452868 engulfment of apoptotic cell GO:0008219 GO:0043653 GO:0008219 JL D 1452866 mitochondrial fragmentation during apoptosis GO:0043654 GO:0006810 JL D 1482638 recognition of apoptotic cell GO:0008219 GO:0048809 GO:0009653 JIC D 1101748 analia morphogenesis (sensu Endopterygota) GO:0048810 GO:0009653 JIC D 1101748 female analia morphogenesis (sensu Endopterygota) GO:0048811 GO:0009653 JIC D 1101748 male analia morphogenesis (sensu Endopterygota) GO:0048812 GO:0009653 JIC D 1101748 neurite morphogenesis GO:0016043 GO:0030154 GO:0048813 GO:0009653 JIC D 1101748 dendrite morphogenesis GO:0016043 GO:0030154 GO:0048814 GO:0009653 JIC D 1101748 regulation of dendrite morphogenesis GO:0016043 GO:0030154 GO:0050789 GO:0048815 GO:0009653 JIC D 1101748 hermaphrodite genitalia morphogenesis GO:0048816 GO:0009653 JIC D 1101748 ocellus morphogenesis GO:0048817 GO:0007275 JIC D 1459965 negative regulation of hair follicle maturation GO:0007582 GO:0050789 GO:0048818 GO:0007275 JIC D 1459965 positive regulation of hair follicle maturation GO:0007582 GO:0050789 GO:0048819 GO:0007275 JIC D 1459965 regulation of hair follicle maturation GO:0007582 GO:0050789 GO:0048820 GO:0007275 JIC D 1459965 hair follicle maturation GO:0007582 GO:0048821 GO:0030154 JIC D 1459965 erythrocyte development GO:0048822 GO:0030154 JIC D 1459965 enucleate erythrocyte development GO:0048823 GO:0030154 JIC D 1459965 nucleate erythrocyte development GO:0048824 GO:0030154 JIC D 1491907 pigment cell precursor differentiation GO:0048825 GO:0000003 JIC D 1439512 cotyledon development GO:0009790 GO:0048826 GO:0000003 JIC D 1439512 cotyledon morphogenesis GO:0009653 GO:0009790 GO:0048827 GO:0007275 JIC D 1439512 phyllome development GO:0048828 GO:0000003 JIC D 1439512 embryonic morphogenesis (sensu Magnoliophyta) GO:0009653 GO:0009790 GO:0048829 GO:0007275 JIC D 1439513 root cap development GO:0048830 GO:0007275 JIC D 1439513 adventitious root development GO:0048831 GO:0007275 JIC D 1439512 regulation of shoot development GO:0050789 GO:0048832 GO:0007275 JIC D 1438331 regulation of organ number GO:0050789 GO:0048833 GO:0007275 JIC D 1438331 regulation of floral organ number GO:0050789 GO:0048834 GO:0007275 JIC D 1438331 regulation of petal number GO:0050789 GO:0048835 GO:0007275 JIC D 1438331 negative regulation of petal number GO:0050789 GO:0048836 GO:0007275 JIC D 1438331 positive regulation of petal number GO:0050789 GO:0048837 GO:0006950 JIC D 1438210 sorus development GO:0007154 GO:0007275 GO:0007582 GO:0009605 GO:0048838 GO:0000003 JIC D 929957 release of seed from dormancy GO:0007275 GO:0007582 Term name changes in biological_process ontology GO:0006074: beta-1,3 glucan metabolism --> 1,3-beta-glucan metabolism GO:0006075: beta-1,3 glucan biosynthesis --> 1,3-beta-glucan biosynthesis GO:0006076: beta-1,3 glucan catabolism --> 1,3-beta-glucan catabolism GO:0006077: beta-1,6 glucan metabolism --> 1,6-beta-glucan metabolism GO:0006078: beta-1,6 glucan biosynthesis --> 1,6-beta-glucan biosynthesis GO:0006079: beta-1,6 glucan catabolism --> 1,6-beta-glucan catabolism GO:0007487: analia morphogenesis (sensu Endopterygota) --> analia development (sensu Endopterygota) GO:0008056: ocellus morphogenesis --> ocellus development GO:0016358: dendrite morphogenesis --> dendrite development GO:0030989: horsetail movement --> horsetail nuclear movement GO:0031150: stalk formation (sensu Dictyosteliida) --> stalk development (sensu Dictyosteliida) GO:0031152: aggregation during fruiting body formation --> aggregation during fruiting body development GO:0031153: slug formation during fruiting body formation --> slug development during fruiting body development GO:0031154: culmination during fruiting body formation --> culmination during fruiting body development GO:0031175: neurite morphogenesis --> neurite development GO:0040035: hermaphrodite genital morphogenesis --> hermaphrodite genitalia development GO:0045496: male analia morphogenesis (sensu Endopterygota) --> male analia development (sensu Endopterygota) GO:0045497: female analia morphogenesis (sensu Endopterygota) --> female analia development (sensu Endopterygota) GO:0050773: regulation of dendrite morphogenesis --> regulation of dendrite development GO:0051797: regulation of hair follicle maturation --> regulation of hair follicle development GO:0051798: positive regulation of hair follicle maturation --> positive regulation of hair follicle development GO:0051799: negative regulation of hair follicle maturation --> negative regulation of hair follicle development New term merges in biological_process ontology GO:0001943 has been merged into GO:0001942, hair follicle development Term movements in biological_process ontology: Terms movements under GO Slim term 'development ; GO:0007275' + GO:0001308, loss of chromatin silencing during replicative cell aging + GO:0007487, analia development (sensu Endopterygota) + GO:0008056, ocellus development + GO:0009640, photomorphogenesis + GO:0009647, skotomorphogenesis + GO:0009704, de-etiolation + GO:0010099, regulation of photomorphogenesis + GO:0010100, negative regulation of photomorphogenesis - GO:0040029, regulation of gene expression, epigenetic + GO:0040035, hermaphrodite genitalia development + GO:0045496, male analia development (sensu Endopterygota) + GO:0045497, female analia development (sensu Endopterygota) Terms movements under GO Slim term 'physiological process ; GO:0007582' + GO:0001708, cell fate specification + GO:0001709, cell fate determination + GO:0001710, mesodermal cell fate commitment + GO:0001711, endodermal cell fate commitment + GO:0001712, ectodermal cell fate commitment + GO:0001713, ectodermal cell fate determination + GO:0001714, endodermal cell fate specification + GO:0001715, ectodermal cell fate specification + GO:0001752, eye photoreceptor fate commitment (sensu Endopterygota) + GO:0001759, induction of an organ + GO:0001827, inner cell mass cell fate commitment + GO:0001830, trophectodermal cell fate commitment + GO:0001942, hair follicle development + GO:0007278, pole cell fate determination + GO:0007294, oocyte fate determination (sensu Insecta) + GO:0007393, dorsal closure, leading edge cell fate determination + GO:0007400, neuroblast fate determination + GO:0007402, ganglion mother cell fate determination + GO:0007403, glial cell fate determination + GO:0007425, tracheal epithelial cell fate determination (sensu Insecta) + GO:0007459, photoreceptor fate commitment (sensu Endopterygota) + GO:0007460, R8 cell fate commitment + GO:0007461, restriction of R8 fate + GO:0007462, R1/R6 cell fate commitment + GO:0007463, R2/R5 cell fate commitment + GO:0007465, R7 cell fate commitment + GO:0007466, cone cell fate commitment (sensu Endopterygota) + GO:0007493, endodermal cell fate determination + GO:0007500, mesodermal cell fate determination + GO:0007501, mesodermal cell fate specification + GO:0007510, cardioblast cell fate determination + GO:0007518, myoblast cell fate determination + GO:0007521, muscle cell fate determination + GO:0009912, auditory receptor cell fate commitment + GO:0009957, epidermal cell fate specification + GO:0009996, negative regulation of cell fate specification + GO:0009997, negative regulation of cardioblast cell fate specification + GO:0009998, negative regulation of retinal cone cell fate specification + GO:0009999, negative regulation of auditory receptor cell fate specification + GO:0010000, negative regulation of cone cell fate specification (sensu Endopterygota) + GO:0010158, abaxial cell fate specification + GO:0010234, tapetal cell fate specification + GO:0014017, neuroblast fate commitment + GO:0014018, neuroblast fate specification + GO:0014030, mesenchymal cell fate commitment + GO:0014034, neural crest cell fate commitment + GO:0014035, neural crest cell fate determination + GO:0014036, neural crest cell fate specification + GO:0016360, sensory organ precursor cell fate determination + GO:0030716, oocyte fate determination + GO:0031069, hair follicle morphogenesis + GO:0031128, induction + GO:0031129, inductive cell-cell signaling + GO:0031130, creation of an inductive signal + GO:0031131, reception of an inductive signal + GO:0035027, leading edge cell fate commitment + GO:0035028, leading edge cell fate determination + GO:0035029, dorsal closure, leading edge cell fate commitment + GO:0035052, aortic cell fate commitment (sensu Insecta) + GO:0035053, heart proper cell fate commitment (sensu Insecta) + GO:0035153, tracheal epithelial cell type specification + GO:0035154, terminal cell fate specification + GO:0035155, negative regulation of terminal cell fate specification + GO:0035156, fusion cell fate specification + GO:0035157, negative regulation of fusion cell fate specification + GO:0035310, notum cell fate specification + GO:0035311, wing cell fate specification + GO:0042055, neuron lineage restriction + GO:0042659, regulation of cell fate specification + GO:0042660, positive regulation of cell fate specification + GO:0042661, regulation of mesodermal cell fate specification + GO:0042662, negative regulation of mesodermal cell fate specification + GO:0042663, regulation of endodermal cell fate specification + GO:0042664, negative regulation of endodermal cell fate specification + GO:0042665, regulation of ectodermal cell fate specification + GO:0042666, negative regulation of ectodermal cell fate specification + GO:0042667, auditory receptor cell fate specification + GO:0042668, auditory receptor cell fate determination + GO:0042669, regulation of auditory receptor cell fate specification + GO:0042671, retinal cone cell fate determination + GO:0042672, retinal cone cell fate specification + GO:0042673, regulation of retinal cone cell fate specification + GO:0042676, cone cell fate commitment + GO:0042677, cone cell fate determination (sensu Endopterygota) + GO:0042678, cone cell fate specification (sensu Endopterygota) + GO:0042679, cone cell fate specification + GO:0042680, cone cell fate determination + GO:0042681, regulation of cone cell fate specification (sensu Endopterygota) + GO:0042682, regulation of cone cell fate specification + GO:0042683, negative regulation of cone cell fate specification + GO:0042684, cardioblast cell fate commitment + GO:0042685, cardioblast cell fate specification + GO:0042686, regulation of cardioblast cell fate specification + GO:0042693, muscle cell fate commitment + GO:0042694, muscle cell fate specification + GO:0042706, eye photoreceptor cell fate commitment + GO:0042707, non-eye photoreceptor cell fate commitment + GO:0043347, neuroblast fate determination (sensu Nematoda and Protostomia) + GO:0043348, neuroblast fate determination (sensu Vertebrata) + GO:0043356, epidermal cell fate specification (sensu Insecta) + GO:0043361, glial cell fate determination (sensu Nematoda and Protostomia) + GO:0045165, cell fate commitment + GO:0045168, cell-cell signaling during cell fate commitment + GO:0045464, R8 cell fate specification + GO:0045500, sevenless signaling pathway + GO:0045501, regulation of sevenless signaling pathway + GO:0045873, negative regulation of sevenless signaling pathway + GO:0045874, positive regulation of sevenless signaling pathway + GO:0046331, lateral inhibition + GO:0046551, retinal cone cell fate commitment + GO:0046552, photoreceptor cell fate commitment + GO:0046845, branched duct epithelial cell fate determination (sensu Insecta) + GO:0048322, axial mesodermal cell fate commitment + GO:0048323, axial mesodermal cell fate determination + GO:0048324, regulation of axial mesodermal cell fate determination + GO:0048325, negative regulation of axial mesodermal cell fate determination + GO:0048326, positive regulation of axial mesodermal cell fate determination + GO:0048327, axial mesodermal cell fate specification + GO:0048328, regulation of axial mesodermal cell fate specification + GO:0048329, negative regulation of axial mesodermal cell fate specification + GO:0048330, positive regulation of axial mesodermal cell fate specification + GO:0048334, regulation of mesodermal cell fate determination + GO:0048335, negative regulation of mesodermal cell fate determination + GO:0048336, positive regulation of mesodermal cell fate determination + GO:0048337, positive regulation of mesodermal cell fate specification + GO:0048343, paraxial mesodermal cell fate commitment + GO:0048344, paraxial mesodermal cell fate determination + GO:0048345, regulation of paraxial mesodermal cell fate determination + GO:0048346, positive regulation of paraxial mesodermal cell fate determination + GO:0048347, negative regulation of paraxial mesodermal cell fate determination + GO:0048348, paraxial mesodermal cell fate specification + GO:0048349, regulation of paraxial mesodermal cell fate specification + GO:0048350, positive regulation of paraxial mesodermal cell fate specification + GO:0048351, negative regulation of paraxial mesodermal cell fate specification + GO:0048372, lateral mesodermal cell fate commitment + GO:0048373, lateral mesodermal cell fate determination + GO:0048374, regulation of lateral mesodermal cell fate determination + GO:0048375, negative regulation of lateral mesodermal cell fate determination + GO:0048376, positive regulation of lateral mesodermal cell fate determination + GO:0048377, lateral mesodermal cell fate specification + GO:0048378, regulation of lateral mesodermal cell fate specification + GO:0048379, positive regulation of lateral mesodermal cell fate specification + GO:0048380, negative regulation of lateral mesodermal cell fate specification + GO:0048393, intermediate mesodermal cell fate commitment + GO:0048394, intermediate mesodermal cell fate determination + GO:0048395, regulation of intermediate mesodermal cell fate determination + GO:0048396, negative regulation of intermediate mesodermal cell fate determination + GO:0048397, positive regulation of intermediate mesodermal cell fate determination + GO:0048398, intermediate mesodermal cell fate specification + GO:0048399, regulation of intermediate mesodermal cell fate specification + GO:0048400, positive regulation of intermediate mesodermal cell fate specification + GO:0048401, negative regulation of intermediate mesodermal cell fate specification + GO:0048600, oocyte fate commitment + GO:0048625, myoblast cell fate commitment + GO:0048626, myoblast cell fate specification + GO:0048629, trichome patterning (sensu Magnoliophyta) + GO:0048663, neuron fate commitment + GO:0048664, neuron fate determination + GO:0048665, neuron fate specification Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0019266, asparagine biosynthesis from oxaloacetate Terms movements under GO Slim term 'biosynthesis ; GO:0009058' + GO:0019445, tyrosine catabolism to fumarate + GO:0019460, glutamate catabolism to fumarate + GO:0019461, glutamate catabolism to fumarate, using glutamate synthase (NADPH) + GO:0019462, glutamate catabolism to fumarate, using glutaminase + GO:0019554, glutamate catabolism to oxaloacetate Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' + GO:0010231, maintenance of dormancy Terms movements under GO Slim term 'morphogenesis ; GO:0009653' - GO:0007487, analia development (sensu Endopterygota) - GO:0008056, ocellus development - GO:0009640, photomorphogenesis - GO:0009647, skotomorphogenesis - GO:0009704, de-etiolation - GO:0010099, regulation of photomorphogenesis - GO:0010100, negative regulation of photomorphogenesis - GO:0016358, dendrite development - GO:0031175, neurite development - GO:0040035, hermaphrodite genitalia development - GO:0043131, enucleation - GO:0043249, erythrocyte maturation - GO:0043354, enucleate erythrocyte maturation - GO:0043362, nucleate erythrocyte maturation - GO:0045496, male analia development (sensu Endopterygota) - GO:0045497, female analia development (sensu Endopterygota) - GO:0050773, regulation of dendrite development Terms movements under GO Slim term 'response to endogenous stimulus ; GO:0009719' + GO:0010231, maintenance of dormancy Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043' - GO:0016358, dendrite development - GO:0031175, neurite development - GO:0043131, enucleation - GO:0043249, erythrocyte maturation - GO:0043354, enucleate erythrocyte maturation - GO:0043362, nucleate erythrocyte maturation - GO:0050773, regulation of dendrite development New terms in cellular_component ontology (45 new terms) GO:0032059 GO:0005623 MAH D 1478615 bleb GO:0044420 GO:0005575 JL D extracellular matrix part GO:0044421 GO:0005576 JL D extracellular region part GO:0044422 GO:0043226 JL D organelle part GO:0044423 GO:0005575 JL D virion part GO:0044424 GO:0005622 JL D intracellular part GO:0044425 GO:0005623 JL D membrane part GO:0044426 GO:0005618 JL D cell wall part GO:0044427 GO:0005694 JL D chromosomal part GO:0044428 GO:0005634 JL D nuclear part GO:0044429 GO:0005739 JL D mitochondrial part GO:0044430 GO:0005856 JL D cytoskeletal part GO:0044431 GO:0005794 JL D Golgi apparatus part GO:0044432 GO:0005783 JL D endoplasmic reticulum part GO:0044433 GO:0005737 JL D cytoplasmic vesicle part GO:0043226 GO:0044434 GO:0009536 JL D chloroplast part GO:0044435 GO:0009536 JL D plastid part GO:0044436 GO:0009579 JL D thylakoid part GO:0044437 GO:0005773 JL D vacuolar part GO:0044438 GO:0005737 JL D microbody part GO:0043226 GO:0044439 GO:0005777 JL D peroxisomal part GO:0044440 GO:0005768 JL D endosomal part GO:0044441 GO:0005929 JL D cilium part GO:0044442 GO:0005622 JL D flagellar part (sensu Eukaryota) GO:0043226 GO:0044443 GO:0005622 JL D fimbrial part GO:0043226 GO:0044444 GO:0005737 JL D cytoplasmic part GO:0044445 GO:0005829 JL D cytosolic part GO:0044446 GO:0005622 JL D intracellular organelle part GO:0043226 GO:0044447 GO:0005622 JL D axoneme part GO:0043226 GO:0044448 GO:0005737 JL D cell cortex part GO:0044449 GO:0005737 JL D contractile fiber part GO:0044450 GO:0005815 JL D microtubule organizing center part GO:0044451 GO:0005654 JL D nucleoplasm part GO:0044452 GO:0005730 JL D nucleolar part GO:0044453 GO:0005635 JL D nuclear membrane part GO:0044454 GO:0000228 JL D nuclear chromosome part GO:0044455 GO:0005739 JL D mitochondrial membrane part GO:0044456 GO:0005575 JL D synapse part GO:0044457 GO:0005623 JL D cell septum part GO:0044459 GO:0005886 JL D plasma membrane part GO:0044460 GO:0005623 JL D flagellar part GO:0044461 GO:0005623 JL D flagellar part (sensu Bacteria) GO:0044462 GO:0030312 JL D external encapsulating structure part GO:0044463 GO:0005623 JL D cell projection part GO:0044464 GO:0005623 JL D cell part Term name changes in cellular_component ontology GO:0042642: actomyosin, myosin component --> actomyosin, myosin part GO:0042643: actomyosin, actin component --> actomyosin, actin part New definitions for cellular_component ontology terms (2 new definitions) GO:0009418, fimbrial shaft GO:0009419, fimbrial tip New term merges in cellular_component ontology GO:0030025 has been merged into GO:0031675, NADH dehydrogenase complex (plastoquinone) Term movements in cellular_component ontology: Terms movements under GO Slim term 'nuclear chromosome ; GO:0000228' - GO:0000812, SWR1 complex - GO:0005677, chromatin silencing complex - GO:0005678, chromatin assembly complex - GO:0008623, chromatin accessibility complex - GO:0016514, SWI/SNF complex - GO:0016585, chromatin remodeling complex - GO:0016586, RSC complex - GO:0016587, ISW1 complex - GO:0016589, NURF complex - GO:0016590, ACF complex - GO:0030869, RENT complex - GO:0031010, ISWI complex - GO:0031011, INO80 complex - GO:0031213, RSF complex - GO:0035059, RCAF complex - GO:0035060, brahma complex - GO:0048188, COMPASS complex - GO:0048189, Lid2 complex Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0009342, glutamate synthase complex (NADPH) + GO:0012506, vesicle membrane + GO:0019866, organelle inner membrane + GO:0031026, glutamate synthase complex + GO:0031027, glutamate synthase complex (NADH) + GO:0031090, organelle membrane + GO:0031300, intrinsic to organelle membrane + GO:0031301, integral to organelle membrane + GO:0031312, extrinsic to organelle membrane + GO:0031588, AMP-activated protein kinase complex + GO:0031967, organelle envelope + GO:0031968, organelle outer membrane + GO:0031970, organelle envelope lumen + GO:0031984, organelle subcompartment Terms movements under GO Slim term 'cell ; GO:0005623' - GO:0009342, glutamate synthase complex (NADPH) - GO:0012506, vesicle membrane - GO:0019866, organelle inner membrane - GO:0031026, glutamate synthase complex - GO:0031027, glutamate synthase complex (NADH) - GO:0031090, organelle membrane - GO:0031300, intrinsic to organelle membrane - GO:0031301, integral to organelle membrane - GO:0031312, extrinsic to organelle membrane - GO:0031588, AMP-activated protein kinase complex - GO:0031968, organelle outer membrane Terms movements under GO Slim term 'nucleoplasm ; GO:0005654' + GO:0000812, SWR1 complex + GO:0005677, chromatin silencing complex + GO:0005678, chromatin assembly complex + GO:0008623, chromatin accessibility complex + GO:0016514, SWI/SNF complex + GO:0016585, chromatin remodeling complex + GO:0016586, RSC complex + GO:0016587, ISW1 complex + GO:0016589, NURF complex + GO:0016590, ACF complex + GO:0030869, RENT complex + GO:0031010, ISWI complex + GO:0031011, INO80 complex + GO:0031213, RSF complex + GO:0035059, RCAF complex + GO:0035060, brahma complex + GO:0048189, Lid2 complex Terms movements under GO Slim term 'cytoskeleton ; GO:0005856' + GO:0031913, contractile vacuole pore Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' + GO:0000136, alpha-1,6-mannosyltransferase complex + GO:0031248, protein acetyltransferase complex + GO:0031414, N-terminal protein acetyltransferase complex + GO:0031415, NatA complex + GO:0031416, NatB complex + GO:0031417, NatC complex + GO:0031431, Dbf4-dependent protein kinase complex + GO:0031501, mannosyltransferase complex + GO:0031502, dolichyl-phosphate-mannose-protein mannosyltransferase complex + GO:0031510, SUMO activating enzyme complex + GO:0031617, NMS complex + GO:0031680, G-protein beta/gamma-subunit complex + GO:0031838, haptoglobin-hemoglobin complex Terms movements under GO Slim term 'organelle ; GO:0043226' + GO:0001520, outer dense fiber + GO:0001534, radial spoke + GO:0001535, radial spokehead + GO:0001536, radial spoke stalk + GO:0005930, axoneme + GO:0005931, nexin + GO:0030990, intraflagellar transport particle + GO:0030991, intraflagellar transport particle A + GO:0030992, intraflagellar transport particle B + GO:0030993, axonemal heterotrimeric kinesin-II complex Terms movements under GO Slim term 'protein complex ; GO:0043234' - GO:0000136, alpha-1,6-mannosyltransferase complex - GO:0031248, protein acetyltransferase complex - GO:0031414, N-terminal protein acetyltransferase complex - GO:0031415, NatA complex - GO:0031416, NatB complex - GO:0031417, NatC complex - GO:0031431, Dbf4-dependent protein kinase complex - GO:0031501, mannosyltransferase complex - GO:0031502, dolichyl-phosphate-mannose-protein mannosyltransferase complex - GO:0031510, SUMO activating enzyme complex - GO:0031617, NMS complex - GO:0031680, G-protein beta/gamma-subunit complex - GO:0031838, haptoglobin-hemoglobin complex + GO:0031913, contractile vacuole pore New terms in molecular_function ontology (11 new terms) GO:0002054 GO:0005488 MGI D 1490281 nucleobase binding GO:0002055 GO:0005488 MGI D 1490281 adenine binding GO:0002056 GO:0005488 MGI D 1490281 cytosine binding GO:0002057 GO:0005488 MGI D 1490281 guanine binding GO:0002058 GO:0005488 MGI D 1490281 uracil binding GO:0002059 GO:0005488 MGI D 1490281 thymine binding GO:0002060 GO:0005488 MGI D 1490281 purine binding GO:0002061 GO:0005488 MGI D 1490281 pyrimidine binding GO:0032050 GO:0005515 MAH D clathrin heavy chain binding GO:0032051 GO:0005515 MAH D clathrin light chain binding GO:0032052 GO:0005488 MAH D 1478417 bile acid binding New term merges in molecular_function ontology GO:0030024 has been merged into GO:0031679, NADH dehydrogenase (plastoquinone) activity SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1101748 Accepted standardizing morphogenesis terms GO:0048667 GO:0048800 GO:0048801 GO:0048802 GO:0048803 GO:0048804 GO:0048805 GO:0048806 GO:0048807 GO:0048808 GO:0048809 GO:0048810 GO:0048811 GO:0048812 GO:0048813 GO:0048814 GO:0048815 GO:0048816 1150938 Accepted morphogenesis terms [none] 1379031 Works For Me parentage of cell surface (sensu M.) GO:0009928 [none] 1423297 Works For Me NTR: monoooritentation of sister kinetochores [none] 1438210 Accepted changes to fruiting body morphogenesis (sensu Dictyosteliida GO:0048837 1438331 Accepted TAIR development terms-February, 2006 GO:0048832 GO:0048833 GO:0048834 GO:0048835 GO:0048836 1439512 Accepted cotyledon development GO:0048825 GO:0048826 GO:0048827 GO:0048828 GO:0048829 GO:0048830 GO:0048831 1439513 Accepted root development GO:0048829 GO:0048830 1452866 Accepted mitochondrial fragmentation during apoptosis GO:0043653 1452868 Accepted engulfment of the apoptotic cell GO:0043652 1459965 Accepted Maturation standard definition GO:0048817 GO:0048818 GO:0048819 GO:0048820 GO:0048821 GO:0048822 GO:0048823 1460050 Accepted ntr nucleolus transport (was inc children nucleocyto...) GO:0032066 1472296 Fixed metabolism, biosynthesis and catabolism std defs [none] 1475597 Accepted ntr: cortical anchoring GO:0032065 1475602 Fixed plastoquinone reductase merges [none] 1477662 Fixed TPV: regulation of gene expression, epigenetic [none] 1478417 Accepted ntr: bile acid binding GO:0032052 1478615 Accepted bleb formation GO:0032059 GO:0032060 1479905 Accepted ntr: basal body duplication GO:0032053 GO:0032054 1480569 Accepted inner ear morph is_a ear morph.? [none] 1481063 Fixed tvp in regulation of translation initiation GO:0032055 GO:0032056 GO:0032057 GO:0032058 GO:0032061 GO:0032062 GO:0032063 GO:0032064 1481790 Fixed minor typo Smc5-Smc6 complex [none] 1481914 Fixed refine definition of MF term: 3705 [none] 1482449 Fixed mp: negative regulation of translation [none] 1482638 Accepted New term: recognition of the apoptotic cell GO:0043654 1482641 Accepted Modification of term definition: apoptotic cell clearance [none] 1483775 Accepted update to term horsetail movement [none] 1487620 Accepted Change term def: GO:0006910 phagocytosis, recognition [none] 1487660 Accepted Change term def: GO:0006911; phagocytosis, engulfment [none] 1490230 Accepted update def :telomere clustering [none] 1491907 Accepted pigment cell precursor differentiation GO:0048824 1492775 Fixed inconsistency beta-1,3 glucan biosynthesis [none] 1492786 Duplicate inconsistency beta-1,3 glucan biosynthesis [none] 929957 Accepted vivipary GO:0048623 GO:0048624 GO:0048838 Statistics: biological_process: 11016 terms, 98.0% defined (10800 terms defined) cellular_component: 1866 terms, 96.5% defined (1800 terms defined) molecular_function: 7956 terms, 92.2% defined (7332 terms defined) Total: 20838 terms, 95.7% defined (19932 terms defined) Term errors none