GO Monthly Release Notes for February 2006 ======================== Generated on Wed Mar 1 07:47:28 2006 Files used: gene_ontology.obo OLD: version 3.1337, 31:01:2006 17:01 NEW: version 3.1394, 27:02:2006 11:17 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (89 new terms) GO:0002040 GO:0009653 MGI D sprouting angiogeneis GO:0002041 GO:0009653 MGI D intussusceptive angiogenesis GO:0002042 GO:0007582 MGI D cell migration during sprouting angiogenesis GO:0009653 GO:0002043 GO:0008283 MGI D blood vessel endothelial cell proliferation during sprouting angiogenesis GO:0009653 GO:0002044 GO:0007582 MGI D blood vessel endothelial cell migration during intussusceptive angiogenesis GO:0009653 GO:0002045 GO:0009653 MGI D regulation of cell adhesion during intussusceptive angiogenesis GO:0050789 GO:0014002 GO:0030154 EF D 1262241 astrocyte development GO:0014003 GO:0030154 EF D 1262241 oligodendrocyte development GO:0014004 GO:0030154 EF D 1262241 microglia differentiation GO:0014005 GO:0030154 EF D 1262241 microglia development GO:0014006 GO:0030154 EF D 1262241 regulation of microglia differentiation GO:0050789 GO:0014007 GO:0030154 EF D 1262241 negative regulation of microglia differentiation GO:0050789 GO:0014008 GO:0030154 EF D 1262241 positive regulation of microglia differentiation GO:0050789 GO:0014009 GO:0007275 EF D 1415524 glial cell proliferation GO:0008283 GO:0014010 GO:0007275 EF D 1415524 Schwann cell proliferation GO:0008283 GO:0014011 GO:0006950 EF D 1415524 Schwann cell proliferation during axon regeneration GO:0008283 GO:0009605 GO:0009653 GO:0016043 GO:0030154 GO:0040007 GO:0014012 GO:0006950 EF D 1415524 axon regeneration in the peripheral nervous system GO:0009605 GO:0009653 GO:0016043 GO:0030154 GO:0040007 GO:0014013 GO:0007275 EF D 1426120 regulation of gliogenesis GO:0050789 GO:0014014 GO:0007275 EF D 1426120 negative regulation of gliogenesis GO:0050789 GO:0014015 GO:0007275 EF D 1426120 positive regulation of gliogenesis GO:0050789 GO:0014016 GO:0030154 EF D 1416461 neuroblast differentiation GO:0014017 GO:0030154 EF D 1416461 neuroblast fate commitment GO:0014018 GO:0030154 EF D 1416461 neuroblast fate specification GO:0014019 GO:0030154 EF D 1416461 neuroblast development GO:0014020 GO:0009653 EF D 1416285 primary neural tube formation GO:0009790 GO:0014021 GO:0009653 EF D 1416285 secondary neural tube formation GO:0009790 GO:0014022 GO:0009653 EF D 1416285 neural plate shaping GO:0009790 GO:0014023 GO:0009653 EF D 1416285 neural rod formation GO:0009790 GO:0014024 GO:0009653 EF D 1416285 neural rod cavitation GO:0009790 GO:0014025 GO:0009653 EF D 1416285 neural keel formation GO:0009790 GO:0014026 GO:0009653 EF D 1416285 medullary cord formation GO:0009790 GO:0014027 GO:0009653 EF D 1416285 medullary cord cavitation GO:0009790 GO:0014028 GO:0007275 EF D 1416285 notochord formation GO:0014029 GO:0009653 EF D 1416285 neural crest formation GO:0009790 GO:0030154 GO:0014030 GO:0030154 EF D 1416285 mesenchymal cell fate commitment GO:0014031 GO:0030154 EF D 1416285 mesenchymal cell development GO:0014032 GO:0030154 EF D 1416285 neural crest cell development GO:0014033 GO:0030154 EF D 1416285 neural crest cell differentiation GO:0014034 GO:0030154 EF D 1416285 neural crest cell fate commitment GO:0014035 GO:0030154 EF D 1416285 neural crest cell fate determination GO:0014036 GO:0030154 EF D 1416285 neural crest cell fate specification GO:0014037 GO:0030154 EF D 1262241 Schwann cell differentiation GO:0014038 GO:0030154 EF D 1262241 regulation of Schwann cell differentiation GO:0050789 GO:0014039 GO:0030154 EF D 1262241 negative regulation of Schwann cell differentiation GO:0050789 GO:0014040 GO:0030154 EF D 1262241 positive regulation of Schwann cell differentiation GO:0050789 GO:0014041 GO:0030154 EF D 1420504 regulation of neuron maturation GO:0014042 GO:0030154 EF D 1420504 positive regulation of neuron maturation GO:0014043 GO:0030154 EF D 1420504 negative regulation of neuron maturation GO:0014044 GO:0030154 EF D 1262241 Schwann cell development GO:0032005 GO:0000003 MAH D 1409994 signal transduction during conjugation with cellular fusion GO:0007275 GO:0007582 GO:0050789 GO:0032006 GO:0007165 MAH D 1426125 regulation of TOR signaling pathway GO:0050789 GO:0032007 GO:0007165 MAH D 1426125 negative regulation of TOR signaling pathway GO:0050789 GO:0032008 GO:0007165 MAH D 1426125 positive regulation of TOR signaling pathway GO:0050789 GO:0043617 GO:0006950 JL D 1409074 cellular response to sucrose starvation GO:0007154 GO:0007582 GO:0009605 GO:0043618 GO:0006350 JL D 1407482 regulation of transcription from RNA polymerase II promoter in response to stress GO:0006950 GO:0050789 GO:0043619 GO:0006350 JL D 1407482 regulation of transcription from RNA polymerase II promoter in response to oxidative stress GO:0006950 GO:0009628 GO:0050789 GO:0043620 GO:0006350 JL D 1407482 regulation of transcription in response to stress GO:0006950 GO:0050789 GO:0043622 GO:0007010 JL D 1423011 cortical microtubule organization and biogenesis GO:0043623 GO:0019538 JL D 1416626 cellular protein complex assembly GO:0043624 GO:0019538 JL D 1416626 cellular protein complex disassembly GO:0048764 GO:0009653 JIC D 1012287 trichoblast maturation GO:0030154 GO:0048765 GO:0009653 JIC D 1012287 root hair cell differentiation GO:0030154 GO:0048766 GO:0009653 JIC D 1012287 root hair initiation GO:0030154 GO:0048767 GO:0009653 JIC D 1012287 root hair elongation GO:0030154 GO:0048768 GO:0016049 JIC D 1421074 root hair cell tip growth GO:0030154 GO:0048769 GO:0030154 JIC D 1238765 sarcomerogenesis GO:0048771 GO:0007582 JIC D 1198273 tissue remodeling GO:0048772 GO:0030154 JIC D 1428581 leucophore differentiation GO:0048773 GO:0030154 JIC D 1428581 erythrophore differentiation GO:0048774 GO:0030154 JIC D 1428581 cyanophore differentiation GO:0048775 GO:0030154 JIC D 1428581 regulation of leucophore differentiation GO:0050789 GO:0048776 GO:0030154 JIC D 1428581 negative regulation of leucophore differentiation GO:0050789 GO:0048777 GO:0030154 JIC D 1428581 positive regulation of leucophore differentiation GO:0050789 GO:0048778 GO:0030154 JIC D 1428581 regulation of erythrophore differentiation GO:0050789 GO:0048779 GO:0030154 JIC D 1428581 negative regulation of erythrophore differentiation GO:0050789 GO:0048780 GO:0030154 JIC D 1428581 positive regulation of erythrophore differentiation GO:0050789 GO:0048781 GO:0030154 JIC D 1428581 regulation of cyanophore differentiation GO:0050789 GO:0048782 GO:0030154 JIC D 1428581 negative regulation of cyanophore differentiation GO:0050789 GO:0048783 GO:0030154 JIC D 1428581 positive regulation of cyanophore differentiation GO:0050789 GO:0048784 GO:0009058 JIC D 1428587 pigment biosynthesis during pigment granule maturation GO:0019748 GO:0030154 GO:0048785 GO:0007275 JIC D 1429350 hatching gland development GO:0048789 GO:0007010 JIC D 1334217 cytoskeletal matrix organization at active zone GO:0048790 GO:0006810 JIC D 1334217 maintenance of presynaptic active zone structure GO:0007267 GO:0048791 GO:0006810 JIC D 1334217 calcium ion dependent exocytosis of neurotransmitter GO:0007267 GO:0048792 GO:0006810 JIC D 1334217 calcium ion independent exocytosis of neurotransmitter GO:0007267 GO:0048793 GO:0007275 JIC D 1431624 pronephros development GO:0051913 GO:0007267 AI D 1245866 regulation of synaptic plasticity by chemical substance GO:0007582 GO:0009628 GO:0051914 GO:0007267 AI D 1245866 positive regulation of synaptic plasticity by chemical substance GO:0007582 GO:0009628 GO:0051915 GO:0007267 AI D 1245866 induction of synaptic plasticity by chemical substance GO:0007582 GO:0009628 New obsoletions in biological_process ontology GO:0048277, nonexocytotic vesicle docking: violates the principle of positivity. Term name changes in biological_process ontology GO:0000750: signal transduction during conjugation with cellular fusion --> pheromone-dependent signal transduction during conjugation with cellular fusion GO:0007516: hemocyte development --> hemocyte development (sensu Arthropoda) GO:0009932: tip growth --> cell tip growth GO:0018977: 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism --> 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism GO:0018978: anaerobic 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism --> anaerobic 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism GO:0042188: 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane catabolism --> 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane catabolism GO:0043164: cell wall biosynthesis (sensu Gram-negative Bacteria) --> cell wall biosynthesis (sensu Proteobacteria) GO:0043165: outer membrane biogenesis (sensu Gram-negative Bacteria) --> outer membrane biogenesis (sensu Proteobacteria) GO:0043483: anthocyanin biosynthesis during anthocyanin accumulation --> anthocyanin biosynthesis during anthocyanin accumulation in response to UV light GO:0048158: oogonium stage oogenesis --> oogonium stage oogenesis (sensu Mammalia) GO:0048160: primary follicle stage oogenesis --> primary follicle stage oogenesis (sensu Mammalia) GO:0048161: double layer follicle stage oogenesis --> double layer follicle stage oogenesis (sensu Mammalia) GO:0048162: multi-layer follicle stage oogenesis --> multi-layer follicle stage oogenesis (sensu Mammalia) GO:0048163: scattered antral spaces stage oogenesis --> scattered antral spaces stage oogenesis (sensu Mammalia) GO:0048164: distinct antral spaces stage oogenesis --> distinct antral spaces stage oogenesis (sensu Mammalia) GO:0048165: fused antrum stage oogenesis --> fused antrum stage oogenesis (sensu Mammalia) GO:0048166: mature follicle stage oogenesis --> mature follicle stage oogenesis (sensu Mammalia) GO:0048229: gametophyte development --> gametophyte development (sensu Magnoliophyta) New definitions for biological_process ontology terms (5 new definitions) GO:0048111, oocyte axis determination (sensu Insecta) GO:0048112, oocyte anterior/posterior axis determination (sensu Insecta) GO:0048123, oocyte dorsal/ventral axis determination (sensu Insecta) GO:0048124, maternal determination of dorsal/ventral axis, oocyte, germ-line encoded (sensu Insecta) GO:0048125, maternal determination of dorsal/ventral axis, oocyte, soma encoded (sensu Insecta) Term movements in biological_process ontology: Terms movements under GO Slim term 'reproduction ; GO:0000003' - GO:0030582, fruiting body formation - GO:0030583, fruiting body formation (sensu Bacteria) - GO:0030587, fruiting body formation (sensu Dictyosteliida) - GO:0031149, stalk cell differentiation - GO:0031150, stalk formation (sensu Dictyosteliida) - GO:0031152, aggregation during fruiting body formation - GO:0031153, slug formation during fruiting body formation - GO:0031154, culmination during fruiting body formation - GO:0031155, regulation of fruiting body formation - GO:0031156, regulation of fruiting body formation (sensu Dictyosteliida) - GO:0031157, regulation of aggregate size - GO:0031158, negative regulation of aggregate size - GO:0031159, positive regulation of aggregate size - GO:0031285, regulation of stalk cell differentiation - GO:0031286, negative regulation of stalk cell differentiation - GO:0031287, positive regulation of stalk cell differentiation - GO:0031288, fruiting body morphogenesis (sensu Dictyosteliida) Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996' + GO:0000045, autophagic vacuole formation Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010' - GO:0000282, bud site selection - GO:0001767, establishment of lymphocyte polarity - GO:0001768, establishment of T cell polarity - GO:0001769, establishment of B cell polarity - GO:0001770, establishment of natural killer cell polarity - GO:0007120, axial bud site selection - GO:0007121, bipolar bud site selection - GO:0007163, establishment and/or maintenance of cell polarity - GO:0007464, R3/R4 cell fate commitment - GO:0016318, ommatidial rotation - GO:0030010, establishment of cell polarity - GO:0030011, maintenance of cell polarity - GO:0030467, establishment and/or maintenance of cell polarity (sensu Fungi) - GO:0030468, establishment of cell polarity (sensu Fungi) - GO:0030469, maintenance of cell polarity (sensu Fungi) - GO:0035088, establishment and/or maintenance of apical/basal cell polarity - GO:0035089, establishment of apical/basal cell polarity - GO:0035090, maintenance of apical/basal cell polarity - GO:0042067, establishment of ommatidial polarity (sensu Endopterygota) - GO:0043339, establishment and/or maintenance of neuroblast polarity (sensu Nematoda and Protostomia) - GO:0043340, establishment of neuroblast polarity (sensu Nematoda and Protostomia) - GO:0043341, maintenance of neuroblast polarity (sensu Nematoda and Protostomia) - GO:0043342, establishment and/or maintenance of neuroblast polarity (sensu Vertebrata) - GO:0043343, establishment of neuroblast polarity (sensu Vertebrata) - GO:0043344, maintenance of neuroblast polarity (sensu Vertebrata) - GO:0045196, establishment and/or maintenance of neuroblast polarity - GO:0045197, establishment and/or maintenance of epithelial cell polarity - GO:0045198, establishment of epithelial cell polarity - GO:0045199, maintenance of epithelial cell polarity - GO:0045200, establishment of neuroblast polarity - GO:0045201, maintenance of neuroblast polarity - GO:0045317, equator specification Terms movements under GO Slim term 'development ; GO:0007275' + GO:0000750, pheromone-dependent signal transduction during conjugation with cellular fusion + GO:0006726, eye pigment biosynthesis + GO:0006727, ommochrome biosynthesis - GO:0009860, pollen tube growth + GO:0016063, rhodopsin biosynthesis Terms movements under GO Slim term 'physiological process ; GO:0007582' - GO:0000045, autophagic vacuole formation + GO:0001974, blood vessel remodeling - GO:0009860, pollen tube growth Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628' + GO:0043052, thermotaxis Terms movements under GO Slim term 'morphogenesis ; GO:0009653' - GO:0001837, epithelial to mesenchymal transition Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043' + GO:0000282, bud site selection + GO:0001767, establishment of lymphocyte polarity + GO:0001768, establishment of T cell polarity + GO:0001769, establishment of B cell polarity + GO:0001770, establishment of natural killer cell polarity + GO:0007120, axial bud site selection + GO:0007121, bipolar bud site selection + GO:0007163, establishment and/or maintenance of cell polarity + GO:0007464, R3/R4 cell fate commitment + GO:0016318, ommatidial rotation + GO:0030010, establishment of cell polarity + GO:0030011, maintenance of cell polarity + GO:0030467, establishment and/or maintenance of cell polarity (sensu Fungi) + GO:0030468, establishment of cell polarity (sensu Fungi) + GO:0030469, maintenance of cell polarity (sensu Fungi) + GO:0035088, establishment and/or maintenance of apical/basal cell polarity + GO:0035089, establishment of apical/basal cell polarity + GO:0035090, maintenance of apical/basal cell polarity + GO:0042067, establishment of ommatidial polarity (sensu Endopterygota) + GO:0043339, establishment and/or maintenance of neuroblast polarity (sensu Nematoda and Protostomia) + GO:0043340, establishment of neuroblast polarity (sensu Nematoda and Protostomia) + GO:0043341, maintenance of neuroblast polarity (sensu Nematoda and Protostomia) + GO:0043342, establishment and/or maintenance of neuroblast polarity (sensu Vertebrata) + GO:0043343, establishment of neuroblast polarity (sensu Vertebrata) + GO:0043344, maintenance of neuroblast polarity (sensu Vertebrata) + GO:0045196, establishment and/or maintenance of neuroblast polarity + GO:0045197, establishment and/or maintenance of epithelial cell polarity + GO:0045198, establishment of epithelial cell polarity + GO:0045199, maintenance of epithelial cell polarity + GO:0045200, establishment of neuroblast polarity + GO:0045201, maintenance of neuroblast polarity + GO:0045317, equator specification Terms movements under GO Slim term 'cell growth ; GO:0016049' + GO:0009860, pollen tube growth + GO:0009932, cell tip growth Terms movements under GO Slim term 'secondary metabolism ; GO:0019748' + GO:0006728, pteridine biosynthesis + GO:0009113, purine base biosynthesis + GO:0046084, adenine biosynthesis + GO:0046099, guanine biosynthesis + GO:0046101, hypoxanthine biosynthesis + GO:0046111, xanthine biosynthesis Terms movements under GO Slim term 'cell differentiation ; GO:0030154' + GO:0001755, neural crest cell migration - GO:0006583, melanin biosynthesis from tyrosine - GO:0006726, eye pigment biosynthesis - GO:0006727, ommochrome biosynthesis - GO:0006782, protoporphyrinogen IX biosynthesis - GO:0006783, heme biosynthesis - GO:0006784, heme a biosynthesis - GO:0006785, heme b biosynthesis - GO:0006786, heme c biosynthesis - GO:0008055, ocellus pigment biosynthesis - GO:0009718, anthocyanin biosynthesis - GO:0015995, chlorophyll biosynthesis - GO:0016063, rhodopsin biosynthesis - GO:0019352, protoporphyrinogen IX biosynthesis from glycine - GO:0019353, protoporphyrinogen IX biosynthesis from glutamate - GO:0019354, siroheme biosynthesis - GO:0030494, bacteriochlorophyll biosynthesis - GO:0031540, regulation of anthocyanin biosynthesis - GO:0031541, negative regulation of anthocyanin biosynthesis - GO:0031542, positive regulation of anthocyanin biosynthesis - GO:0042438, melanin biosynthesis - GO:0043477, pigment biosynthesis during pigment accumulation - GO:0043483, anthocyanin biosynthesis during anthocyanin accumulation in response to UV light - GO:0046148, pigment biosynthesis - GO:0048021, regulation of melanin biosynthesis - GO:0048022, negative regulation of melanin biosynthesis - GO:0048023, positive regulation of melanin biosynthesis - GO:0048034, heme o biosynthesis - GO:0048543, phytochrome chromophore biosynthesis - GO:0051551, aurone biosynthesis - GO:0051553, flavone biosynthesis - GO:0051555, flavonol biosynthesis - GO:0051559, phlobaphene biosynthesis Terms movements under GO Slim term 'growth ; GO:0040007' - GO:0009860, pollen tube growth - GO:0009932, cell tip growth Terms movements under GO Slim term 'regulation of biological process ; GO:0050789' + GO:0000750, pheromone-dependent signal transduction during conjugation with cellular fusion New terms in cellular_component ontology (6 new terms) GO:0032009 GO:0016023 MAH D 1429379 early phagosome GO:0032010 GO:0016023 MAH D 1429379 late phagosome GO:0048770 GO:0016023 JIC D 1431082 pigment granule GO:0048786 GO:0005622 JIC D 1334217 presynaptic active zone GO:0043226 GO:0048787 GO:0005623 JIC D 1334217 active zone presynaptic plasma membrane GO:0048788 GO:0005737 JIC D 1334217 presynaptic cytoskeletal matrix assembled at active zones GO:0005856 Term name changes in cellular_component ontology GO:0009275: cell wall (sensu Gram-positive Bacteria) --> cell wall (sensu Firmicutes) GO:0009276: cell wall (sensu Gram-negative Bacteria) --> cell wall (sensu Proteobacteria) GO:0009279: outer membrane (sensu Gram-negative Bacteria) --> outer membrane (sensu Proteobacteria) GO:0030288: periplasmic space (sensu Gram-negative Bacteria) --> periplasmic space (sensu Proteobacteria) GO:0031230: intrinsic to outer membrane (sensu Gram-negative Bacteria) --> intrinsic to outer membrane (sensu Proteobacteria) GO:0031238: extrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria) --> extrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria) GO:0031239: intrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria) --> intrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria) GO:0031244: extrinsic to outer membrane (sensu Gram-negative Bacteria) --> extrinsic to outer membrane (sensu Proteobacteria) GO:0045203: integral to outer membrane (sensu Gram-negative Bacteria) --> integral to outer membrane (sensu Proteobacteria) GO:0051077: secondary cell septum --> secondary cell septum (sensu Fungi) New definitions for cellular_component ontology terms (6 new definitions) GO:0005842, cytosolic large ribosomal subunit (sensu Eukaryota) GO:0042652, respiratory chain complex I, peripheral segment (sensu Eukaryota) GO:0042653, respiratory chain complex I, membrane segment (sensu Eukaryota) GO:0045256, hydrogen-translocating F-type ATPase complex (sensu Bacteria) GO:0045271, respiratory chain complex I GO:0045320, hydrogen-translocating F-type ATPase complex (sensu Viridiplantae) Term movements in cellular_component ontology: Terms movements under GO Slim term 'cellular_component ; GO:0005575' + GO:0031594, neuromuscular junction + GO:0043083, synaptic cleft + GO:0045202, synapse Terms movements under GO Slim term 'extracellular matrix (sensu Metazoa) ; GO:0005578' - GO:0031594, neuromuscular junction - GO:0042734, presynaptic membrane - GO:0043083, synaptic cleft - GO:0045202, synapse - GO:0045211, postsynaptic membrane Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0005952, cAMP-dependent protein kinase complex + GO:0005953, CAAX-protein geranylgeranyltransferase complex + GO:0005954, calcium- and calmodulin-dependent protein kinase complex Terms movements under GO Slim term 'cell ; GO:0005623' + GO:0009319, cytochrome o ubiquinol oxidase complex Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0005951, carbamoyl-phosphate synthase complex + GO:0009333, cysteine synthase complex Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' - GO:0005951, carbamoyl-phosphate synthase complex - GO:0005952, cAMP-dependent protein kinase complex - GO:0005953, CAAX-protein geranylgeranyltransferase complex - GO:0005954, calcium- and calmodulin-dependent protein kinase complex - GO:0009319, cytochrome o ubiquinol oxidase complex - GO:0009333, cysteine synthase complex Terms movements under GO Slim term 'protein complex ; GO:0043234' + GO:0005951, carbamoyl-phosphate synthase complex + GO:0005952, cAMP-dependent protein kinase complex + GO:0005953, CAAX-protein geranylgeranyltransferase complex + GO:0005954, calcium- and calmodulin-dependent protein kinase complex + GO:0009319, cytochrome o ubiquinol oxidase complex + GO:0009333, cysteine synthase complex New terms in molecular_function ontology (9 new terms) GO:0002039 GO:0005515 MGI D p53 binding GO:0043621 GO:0005515 JL D 1386976 protein self-association GO:0048763 GO:0005216 JIC D 1246020 calcium-induced calcium release activity GO:0051907 GO:0003824 AI D S-(hydroxymethyl)glutathione synthase activity GO:0051908 GO:0004518 AI D 1422607 double-stranded DNA specific 5'-3' exodeoxyribonuclease activity GO:0051909 GO:0003824 AI D 1397633 acetylenecarboxylate hydratase activity, producing 3-hydroxypropenoate GO:0051910 GO:0016740 AI D 1397633 heparitin sulfotransferase activity GO:0051911 GO:0003824 AI D 1397633 Methanosarcina-phenazine hydrogenase activity GO:0051912 GO:0003824 AI D 1397633 CoB--CoM heterodisulfide reductase activity New obsoletions in molecular_function ontology GO:0045331, coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity: represents two activities. Term name changes in molecular_function ontology GO:0000155: two-component sensor molecule activity --> two-component sensor activity GO:0004028: aldehyde dehydrogenase activity --> 3-chloroallyl aldehyde dehydrogenase activity GO:0004115: cAMP-specific phosphodiesterase activity --> 3',5'-cyclic-AMP phosphodiesterase activity GO:0004812: tRNA ligase activity --> aminoacyl-tRNA ligase activity GO:0017005: tyrosyl-DNA phosophodiesterase activity --> tyrosyl-DNA phosphodiesterase activity GO:0018497: 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrogenase activity --> 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrogenase activity GO:0018702: 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethene dehalogenase activity --> 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene dehalogenase activity GO:0018770: 6-oxo-2-hydroxy-7-(4'-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate hydrolase activity --> 6-oxo-2-hydroxy-7-(4-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate hydrolase activity GO:0018792: bis(4'-chlorophenyl)acetate decarboxylase activity --> bis(4-chlorophenyl)acetate decarboxylase activity GO:0018827: 1-chloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase activity --> 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrochlorinase activity GO:0018829: 1,1-dichloro-2,2-bis(4'-chlorophenyl)ethane dehydrochlorinase activity --> 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane dehydrochlorinase activity GO:0042802: protein self binding --> identical protein binding GO:0048101: calcium- and calmodulin-regulated cGMP-specific phosphodiesterase activity --> calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity GO:0050079: acetylenecarboxylate hydratase activity --> acetylenecarboxylate hydratase activity, producing 3-oxopropanoate New term merges in molecular_function ontology GO:0004116 has been merged into GO:0047555, 3',5'-cyclic-GMP phosphodiesterase activity GO:0008702 has been merged into GO:0004489, methylenetetrahydrofolate reductase (NADPH) activity GO:0042569 has been merged into GO:0031704, apelin receptor binding GO:0047318 has been merged into GO:0003992, acetylornithine transaminase activity GO:0047737 has been merged into GO:0047735, cellobiose dehydrogenase (acceptor) activity GO:0047767 has been merged into GO:0008805, carbon-monoxide oxygenase activity GO:0050375 has been merged into GO:0047262, polygalacturonate 4-alpha-galacturonosyltransferase activity Term movements in molecular_function ontology: Terms movements under GO Slim term 'catalytic activity ; GO:0003824' + GO:0019138, ribosylhomocysteinase activity Terms movements under GO Slim term 'hydrolase activity ; GO:0016787' - GO:0019138, ribosylhomocysteinase activity SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1012287 Accepted root hair related terms GO:0048629 GO:0048764 GO:0048765 GO:0048766 GO:0048767 1198273 Accepted Advice tissue remodelling GO:0048771 1219711 Accepted establishment and/or maintenance of cell polarity [none] 1228979 Accepted metamorphosis terms GO:0048716 GO:0048717 GO:0048718 GO:0048719 GO:0048720 GO:0048721 GO:0048722 GO:0048723 GO:0048724 GO:0048725 GO:0048726 GO:0048727 GO:0048728 GO:0048734 GO:0048735 GO:0048736 GO:0048737 1237567 Accepted GO:0030587 : fruiting body formation (sensu Dictyosteliida) [none] 1238765 Accepted sarcomerogenesis GO:0048769 1242580 None TAIR process terms_july 2005 GO:0010243 GO:0010244 GO:0010245 GO:0010246 GO:0010247 GO:0010248 GO:0010249 GO:0010250 GO:0010252 GO:0010253 GO:0010254 GO:0010255 GO:0010256 GO:0010257 GO:0010258 GO:0010259 GO:0010260 GO:0010261 GO:0043473 GO:0043474 GO:0043475 GO:0043476 GO:0043477 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0043482 GO:0043483 1245866 Accepted child of "regulation of neuronal synaptic plasticity" GO:0051913 GO:0051914 GO:0051915 1246020 Accepted CICR GO:0048763 1247046 Accepted trichome patterning [none] 1334217 Accepted 4 new terms proposed - Neuro components and process GO:0048786 GO:0048787 GO:0048788 GO:0048789 GO:0048790 GO:0048791 GO:0048792 1363922 Rejected child of neuroprotection [none] 1382483 Accepted plant cell differentiation terms missing GO:0014001 GO:0048756 GO:0048758 GO:0048759 GO:0048760 GO:0048761 GO:0048762 1409994 Fixed new par/tpv signal transduction during conjugation ... GO:0032005 1415524 Accepted Schwann cell proliferation GO:0014009 GO:0014010 GO:0014011 GO:0014012 1416285 Accepted neural tube formation GO:0014020 GO:0014021 GO:0014022 GO:0014023 GO:0014024 GO:0014025 GO:0014026 GO:0014027 GO:0014028 GO:0014029 GO:0014030 GO:0014031 GO:0014032 GO:0014033 GO:0014034 GO:0014035 GO:0014036 1416461 Accepted neuroblast specification GO:0014016 GO:0014017 GO:0014018 GO:0014019 1416626 Fixed protein complex metabolism GO:0043623 GO:0043624 1419010 Fixed ribonuclease III activity terms [none] 1420504 Accepted neuron survival GO:0014041 GO:0014042 GO:0014043 1421074 Accepted New term: Root hair tip growth GO:0048768 1421601 Accepted Addition of Synonym to GO:0007029 [none] 1421764 Fixed def edit for pilus biogenesis [none] 1422607 Accepted NTR: ds DNA specific 5'-3' exodeoxyribonuclease GO:0051908 1423011 Accepted cortical microtubule organization and biogenesis GO:0043622 1423107 Accepted space missing and typo in def of GO:0030133 [none] 1423543 Fixed chloroplast ATPase complex [none] 1423620 Fixed update pigment granule terms [none] 1423622 Accepted pigment granule GO:0048770 1426120 Accepted regulation of gliogenesis GO:0014013 GO:0014014 GO:0014015 1426125 Accepted NTR: regulation of TOR signaling GO:0032006 GO:0032007 GO:0032008 1427439 Accepted taxon IDs and names [none] 1428581 Accepted add pigment cell differentiation terms GO:0048772 GO:0048773 GO:0048774 GO:0048775 GO:0048776 GO:0048777 GO:0048778 GO:0048779 GO:0048780 GO:0048781 GO:0048782 GO:0048783 1428587 Accepted add children of pigment biosynthesis GO:0048784 1428602 Accepted add synonym to pigment cell diff [none] 1429280 Works For Me GO:0051606 : detection of stimulus parentage [none] 1429350 Accepted hatching gland development GO:0048785 1429379 Accepted early and late phagosome GO:0032009 GO:0032010 1429413 Fixed synonym scope for (GO:0000146 microfilament motor activity) [none] 1430861 Accepted update melanosome 1431311 Fixed GO:0048775 - GO:0048783 [none] 1431576 Wont Fix 3' RNA BINDING before GO:0008143 [none] 1431624 Accepted NTR: pronephros development GO:0048793 1431784 Accepted "regulation of ..." term relationship to parent [none] 1431818 Duplicate "regulation of ..." term relationship to parent [none] 1431919 Fixed GO:0000155 two-component sensor molecule activity [none] 1432357 Accepted mp: thermotaxis [none] 1432461 Accepted mp: autophagic vacuole formation [none] 1433201 Accepted synonym request for "cell separation during cytokinesis" [none] 1435968 Accepted cGMP-specific phosphodiesterase activity and related [none] 1436200 Accepted apelin and APJ receptor binding are the same activity [none] 1436548 Works For Me biosynthesis cathecolamines [none] 1436560 Fixed typo: in term name tyrosyl-DNA phosophodiesterase activity [none] 1437560 Duplicate neurotransmitter secretion [none] Statistics: biological_process: 10804 terms, 98.0% defined (10586 terms defined) cellular_component: 1812 terms, 96.2% defined (1743 terms defined) molecular_function: 7921 terms, 92.1% defined (7295 terms defined) Total: 20537 terms, 95.6% defined (19624 terms defined) Term errors none