GO Monthly Release Notes for July 2005 ======================== Generated on Mon Aug 8 15:19:55 2005 Files used: gene_ontology.obo OLD: version 3.955, 30:06:2005 16:48 NEW: version 3.1014, 28:07:2005 15:19 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (118 new terms) GO:0001956 GO:0006810 MGI D 1035336 positive regulation of neurotransmitter secretion GO:0007267 GO:0031524 GO:0006629 MAH D 1240755 menthol metabolism GO:0019748 GO:0031525 GO:0006629 MAH D 1240755 menthol biosynthesis GO:0009058 GO:0019748 GO:0031529 GO:0009653 MAH D 1241635 ruffle organization and biogenesis GO:0016043 GO:0031532 GO:0007010 MAH D 1035336 actin cytoskeleton reorganization GO:0031534 GO:0006810 MAH D 1236014 minus-end directed microtubule sliding GO:0007010 GO:0031535 GO:0006810 MAH D 1236014 plus-end directed microtubule sliding GO:0007010 GO:0031536 GO:0007049 MAH D 1243216 positive regulation of exit from mitosis GO:0031537 GO:0006519 MAH D 1244423 regulation of anthocyanin metabolism GO:0019748 GO:0031538 GO:0006519 MAH D 1244423 negative regulation of anthocyanin metabolism GO:0019748 GO:0031539 GO:0006519 MAH D 1244423 positive regulation of anthocyanin metabolism GO:0019748 GO:0031540 GO:0006519 MAH D 1244423 regulation of anthocyanin biosynthesis GO:0009058 GO:0019748 GO:0031541 GO:0006519 MAH D 1244423 negative regulation of anthocyanin biosynthesis GO:0009058 GO:0019748 GO:0031542 GO:0006519 MAH D 1244423 positive regulation of anthocyanin biosynthesis GO:0009058 GO:0019748 GO:0031547 GO:0007165 MAH D 1235954 brain-derived neurotrophic factor receptor signaling pathway GO:0031548 GO:0007165 MAH D 1235954 regulation of brain-derived neurotrophic factor receptor signaling pathway GO:0031549 GO:0007165 MAH D 1235954 negative regulation of brain-derived neurotrophic factor receptor signaling pathway GO:0031550 GO:0007165 MAH D 1235954 positive regulation of brain-derived neurotrophic factor receptor signaling pathway GO:0031551 GO:0007165 MAH D 1235954 regulation of brain-derived neurotrophic factor receptor activity GO:0031552 GO:0007165 MAH D 1235954 negative regulation of brain-derived neurotrophic factor receptor activity GO:0031553 GO:0007165 MAH D 1235954 positive regulation of brain-derived neurotrophic factor receptor activity GO:0031554 GO:0006350 MAH D 1240516 regulation of transcription termination GO:0031555 GO:0006350 MAH D 1240516 transcriptional attenuation GO:0031556 GO:0006350 MAH D 1240516 ribosome-mediated transcriptional attenuation GO:0043412 GO:0008152 JL D 1153592 biopolymer modification GO:0043413 GO:0008152 JL D 1153592 biopolymer glycosylation GO:0043414 GO:0008152 JL D 1232200 biopolymer methylation GO:0043415 GO:0006950 JL D 1234669 positive regulation of skeletal muscle regeneration GO:0009605 GO:0009653 GO:0040007 GO:0043416 GO:0006950 JL D 1234669 regulation of skeletal muscle regeneration GO:0009605 GO:0009653 GO:0040007 GO:0043417 GO:0006950 JL D 1234669 negative regulation of skeletal muscle regeneration GO:0009605 GO:0009653 GO:0040007 GO:0043418 GO:0006519 JL D 1035336 homocysteine catabolism GO:0009056 GO:0043419 GO:0008152 JL D 1035336 urea catabolism GO:0043420 GO:0008152 JL D 1035336 anthranilate metabolism GO:0009628 GO:0043421 GO:0009056 JL D 1035336 anthranilate catabolism GO:0009628 GO:0043427 GO:0008152 JL D 1035336 carbon fixation by 3-hydroxypropionate cycle GO:0043432 GO:0006464 JL D 1238270 myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism GO:0009056 GO:0043433 GO:0006350 JL D 1236959 negative regulation of transcription factor activity GO:0043434 GO:0009719 JL D 1237434 response to peptide hormone stimulus GO:0043435 GO:0009719 JL D 1237434 response to corticotropin-releasing hormone stimulus GO:0048608 GO:0000003 JIC D 1224241 reproductive structure development GO:0007275 GO:0048609 GO:0000003 JIC D 1224241 reproductive organismal physiological process GO:0007582 GO:0048610 GO:0000003 JIC D 1224241 reproductive cellular physiological process GO:0007582 GO:0048611 GO:0007275 JIC D 1185976 embryonic ectodermal gut development GO:0048612 GO:0007275 JIC D 1185976 post-embryonic ectodermal gut development GO:0048613 GO:0009653 JIC D 1185976 embryonic ectodermal gut morphogenesis GO:0009790 GO:0048614 GO:0009653 JIC D 1185976 post-embryonic ectodermal gut morphogenesis GO:0048615 GO:0009653 JIC D 1185976 embryonic anterior midgut (ectodermal) morphogenesis GO:0009790 GO:0048616 GO:0009653 JIC D 1185976 post-embryonic anterior midgut (ectodermal) morphogenesis GO:0048617 GO:0009653 JIC D 1185976 embryonic foregut morphogenesis GO:0009790 GO:0048618 GO:0009653 JIC D 1185976 post-embryonic foregut morphogenesis GO:0048619 GO:0009653 JIC D 1185976 embryonic hindgut morphogenesis GO:0009790 GO:0048620 GO:0009653 JIC D 1185976 post-embryonic hindgut morphogenesis GO:0048621 GO:0009653 JIC D 1185976 post-embryonic gut morphogenesis GO:0048622 GO:0000003 JIC D 1234188 reproductive sporulation GO:0007582 GO:0030154 GO:0048623 GO:0007275 JIC D 1035336 seed germination on parent plant GO:0007582 GO:0048624 GO:0000003 JIC D 1035336 plantlet formation on parent plant GO:0007275 GO:0048625 GO:0009653 JIC D 1229575 myoblast cell fate commitment GO:0030154 GO:0048626 GO:0009653 JIC D 1229575 myoblast cell fate specification GO:0030154 GO:0048627 GO:0009653 JIC D 1229575 myoblast development GO:0030154 GO:0048628 GO:0009653 JIC D 1229575 myoblast maturation GO:0030154 GO:0048629 GO:0007275 JIC D 1035336 trichome patterning GO:0051457 GO:0007582 AI D 1214247 maintenance of protein localization in nucleus GO:0051458 GO:0007267 AI D 1230356 adrenocorticotropin hormone secretion GO:0007582 GO:0051459 GO:0007267 AI D 1230356 regulation of adrenocorticotropin hormone secretion GO:0007582 GO:0051460 GO:0007267 AI D 1230356 negative regulation of adrenocorticotropin hormone secretion GO:0007582 GO:0051461 GO:0007267 AI D 1230356 positive regulation of adrenocorticotropin hormone secretion GO:0007582 GO:0051462 GO:0007267 AI D 1230331 regulation of cortisol secretion GO:0007582 GO:0051463 GO:0007267 AI D 1230331 negative regulation of cortisol secretion GO:0007582 GO:0051464 GO:0007267 AI D 1230331 positive regulation of cortisol secretion GO:0007582 GO:0051465 GO:0007267 AI D 1230331 negative regulation of corticotropin-releasing hormone secretion GO:0007582 GO:0051466 GO:0007267 AI D 1230331 positive regulation of corticotropin-releasing hormone secretion GO:0007582 GO:0051467 GO:0009719 AI D 1230325 detection of steroid hormone stimulus GO:0051468 GO:0009719 AI D 1230325 detection of glucocorticoid hormone stimulus GO:0051469 GO:0006810 AI D vesicle fusion with vacuole GO:0006996 GO:0051470 GO:0006810 AI D 1124304 ectoine transport GO:0051472 GO:0005975 AI D 1124304 glucosylglycerol metabolism GO:0051473 GO:0005975 AI D 1124304 glucosylglycerol biosynthesis GO:0009058 GO:0051475 GO:0006810 AI D 1124304 glucosylglycerol transport GO:0051476 GO:0006810 AI D 1124304 mannosylglycerate transport GO:0051478 GO:0005975 AI D 1124304 mannosylglycerate metabolism GO:0051479 GO:0005975 AI D 1124304 mannosylglycerate biosynthesis GO:0009058 GO:0051480 GO:0019725 AI D 1231161 cytoplasmic calcium ion homeostasis GO:0051481 GO:0019725 AI D 1231161 reduction of cytoplasmic calcium ion concentration GO:0051482 GO:0007165 AI D 1231161 elevation of cytoplasmic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) GO:0019725 GO:0051483 GO:0006629 AI D 1232667 terpenoid biosynthesis, mevalonate-independent GO:0009058 GO:0019748 GO:0051484 GO:0006629 AI D 1232667 isopentenyl diphosphate biosynthesis, mevalonate-independent pathway, during terpenoid biosynthesis GO:0009058 GO:0019748 GO:0051485 GO:0006629 AI D 1232667 terpenoid biosynthesis, mevalonate-dependent GO:0009058 GO:0019748 GO:0051486 GO:0006629 AI D 1232667 isopentenyl diphosphate biosynthesis, mevalonate pathway, during terpenoid biosynthesis GO:0009058 GO:0019748 GO:0051487 GO:0007049 AI D 1187523 anaphase-promoting complex activation during meiotic cell cycle GO:0051488 GO:0008150 AI D 1187523 anaphase-promoting complex activation GO:0051489 GO:0009653 AI D 1241676 regulation of filopodium formation GO:0016043 GO:0051490 GO:0009653 AI D 1241676 negative regulation of filopodium formation GO:0016043 GO:0051491 GO:0009653 AI D 1241676 positive regulation of filopodium formation GO:0016043 GO:0051492 GO:0007010 AI D 1241554 regulation of stress fiber formation GO:0051493 GO:0007010 AI D 1241554 regulation of cytoskeleton organization and biogenesis GO:0051494 GO:0007010 AI D 1241554 negative regulation of cytoskeleton organization and biogenesis GO:0051495 GO:0007010 AI D 1241554 positive regulation of cytoskeleton organization and biogenesis GO:0051496 GO:0007010 AI D 1241554 positive regulation of stress fiber formation GO:0051497 GO:0007010 AI D 1241554 negative regulation of stress fiber formation GO:0051501 GO:0006629 AI D 1240760 diterpene phytoalexin metabolism GO:0019748 GO:0051502 GO:0006629 AI D 1240760 diterpene phytoalexin biosynthesis GO:0019748 GO:0051503 GO:0006810 AI D 1238967 adenine nucleotide transport GO:0051504 GO:0006629 AI D 1240760 diterpene phytoalexin precursor biosynthesis pathway GO:0019748 GO:0051510 GO:0016049 AI D 1240136 regulation of unidimensional cell growth GO:0051511 GO:0016049 AI D 1240136 negative regulation of unidimensional cell growth GO:0051512 GO:0016049 AI D 1240136 positive regulation of unidimensional cell growth GO:0051513 GO:0016049 AI D 1240136 regulation of monopolar cell growth GO:0051514 GO:0016049 AI D 1240136 negative regulation of monopolar cell growth GO:0051515 GO:0016049 AI D 1240136 positive regulation of monopolar cell growth GO:0051516 GO:0016049 AI D 1240136 regulation of bipolar cell growth GO:0051517 GO:0016049 AI D 1240136 negative regulation of bipolar cell growth GO:0051518 GO:0016049 AI D 1240136 positive regulation of bipolar cell growth GO:0051519 GO:0016049 AI D 1240136 activation of bipolar cell growth GO:0051520 GO:0016049 AI D 1240136 termination of bipolar cell growth GO:0051521 GO:0016049 AI D 1240136 termination of monopolar cell growth GO:0051522 GO:0016049 AI D 1240136 activation of monopolar cell growth GO:0051523 GO:0016049 AI D 1240136 cell growth mode switching, monopolar to bipolar GO:0051524 GO:0016049 AI D 1240136 cell growth mode switch, bipolar to monopolar New obsoletions in biological_process ontology GO:0006698, ecdysone modification: was created to cover the conversion of ecdysone to its active form ecdysterone (20-hydroxyecdysone), but this reaction is carried out in a single step by ecdysone 20-monooxygenase (EC 1.14.99.22) and so is a function rather than a process. Term name changes in biological_process ontology GO:0000074: regulation of cell cycle --> regulation of progression through cell cycle GO:0006487: N-linked glycosylation --> protein amino acid N-linked glycosylation GO:0006493: O-linked glycosylation --> protein amino acid O-linked glycosylation GO:0006494: terminal glycosylation --> protein amino acid terminal glycosylation GO:0006496: terminal N-glycosylation --> protein amino acid terminal N-glycosylation GO:0006621: protein-ER retention --> protein retention in ER GO:0007204: positive regulation of cytosolic calcium ion concentration --> elevation of cytoplasmic calcium ion concentration GO:0007346: regulation of mitotic cell cycle --> regulation of progression through mitotic cell cycle GO:0007347: regulation of preblastoderm mitotic cell cycle --> regulation of progression through preblastoderm mitotic cell cycle GO:0007348: regulation of syncytial blastoderm mitotic cell cycle --> regulation of progression through syncytial blastoderm mitotic cell cycle GO:0009442: allantoin assimilation --> allantoin assimilation pathway GO:0009794: regulation of mitotic cell cycle, embryonic --> regulation of progression through embryonic mitotic cell cycle GO:0010142: mevalonate pathway --> farnesyl diphosphate biosynthesis, mevalonate pathway GO:0018103: C-linked glycosylation --> protein amino acid C-linked glycosylation GO:0018240: S-linked glycosylation via cysteine --> protein amino acid S-linked glycosylation via cysteine GO:0018241: O-linked glycosylation via hydroxylysine --> protein amino acid O-linked glycosylation via hydroxylysine GO:0018242: O-linked glycosylation via serine --> protein amino acid O-linked glycosylation via serine GO:0018243: O-linked glycosylation via threonine --> protein amino acid O-linked glycosylation via threonine GO:0018244: N-linked glycosylation via tryptophan --> protein amino acid N-linked glycosylation via tryptophan GO:0018245: O-linked glycosylation via tyrosine --> protein amino acid O-linked glycosylation via tyrosine GO:0018258: O-linked glycosylation via hydroxyproline --> protein amino acid O-linked glycosylation via hydroxyproline GO:0018279: N-linked glycosylation via asparagine --> protein amino acid N-linked glycosylation via asparagine GO:0018280: S-linked glycosylation --> protein amino acid S-linked glycosylation GO:0018317: C-linked glycosylation via tryptophan --> protein amino acid C-linked glycosylation via tryptophan GO:0018406: C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan --> protein amino acid C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan GO:0019287: isopentenyl diphosphate biosynthesis via mevalonate --> isopentenyl diphosphate biosynthesis, mevalonate pathway GO:0019288: mevalonate-independent isopentenyl diphosphate biosynthesis --> isopentenyl diphosphate biosynthesis, mevalonate-independent pathway GO:0019565: aerobic glycerol fermentation --> aerobic glycerol degradation GO:0019647: formaldehyde assimilation via ribulose-monophosphate cycle --> formaldehyde assimilation via ribulose monophosphate cycle GO:0019648: formaldehyde assimilation via xylulose-monophosphate cycle --> formaldehyde assimilation via xylulose monophosphate cycle GO:0019651: diacetyl fermentation --> citrate fermentation to diacetyl GO:0019681: acetyl-CoA assimilation --> acetyl-CoA assimilation pathway GO:0019878: lysine biosynthesis, aminoadipic pathway --> lysine biosynthesis via aminoadipic acid GO:0042076: phosphate-linked glycosylation --> protein amino acid phosphate-linked glycosylation GO:0042077: phosphate-linked glycosylation via serine --> protein amino acid phosphate-linked glycosylation via serine GO:0042543: N-linked glycosylation via arginine --> protein amino acid N-linked glycosylation via arginine GO:0045053: protein-Golgi retention --> protein retention in Golgi GO:0045786: negative regulation of cell cycle --> negative regulation of progression through cell cycle GO:0045787: positive regulation of cell cycle --> positive regulation of progression through cell cycle GO:0045930: negative regulation of mitotic cell cycle --> negative regulation of progression through mitotic cell cycle GO:0045976: negative regulation of mitotic cell cycle, embryonic --> negative regulation of progression through embryonic mitotic cell cycle GO:0046001: negative regulation of preblastoderm mitotic cell cycle --> negative regulation of progression through preblastoderm mitotic cell cycle GO:0046002: positive regulation of preblastoderm mitotic cell cycle --> positive regulation of progression through preblastoderm mitotic cell cycle GO:0046003: negative regulation of syncytial blastoderm mitotic cell cycle --> negative regulation of progression through syncytial blastoderm mitotic cell cycle GO:0046004: positive regulation of syncytial blastoderm mitotic cell cycle --> positive regulation of progression through syncytial blastoderm mitotic cell cycle GO:0051445: regulation of meiotic cell cycle --> regulation of progression through meiotic cell cycle GO:0051446: positive regulation of meiotic cell cycle --> positive regulation of progression through meiotic cell cycle GO:0051447: negative regulation of meiotic cell cycle --> negative regulation of progression through meiotic cell cycle New definitions for biological_process ontology terms (32 new definitions) GO:0000135, septin checkpoint GO:0006393, RNA transcription termination from mitochondrial promoter GO:0006698, ecdysone modification GO:0009386, translational attenuation GO:0009442, allantoin assimilation pathway GO:0009759, indole glucosinolate biosynthesis GO:0015977, carbon utilization by fixation of carbon dioxide GO:0019417, sulfur oxidation GO:0019420, dissimilatory sulfate reduction GO:0019421, sulfate reduction, APS pathway GO:0019422, disproportionation of elemental sulfur GO:0019552, glutamate fermentation via 2-hydroxyglutarate GO:0019565, aerobic glycerol degradation GO:0019588, glycerol fermentation GO:0019643, reductive tricarboxylic acid cycle GO:0019647, formaldehyde assimilation via ribulose monophosphate cycle GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle GO:0019649, formaldehyde assimilation GO:0019651, citrate fermentation to diacetyl GO:0019653, purine fermentation GO:0019657, succinate-propionate fermentation GO:0019658, glucose fermentation to lactate and acetate GO:0019664, mixed acid fermentation GO:0019666, nitrogenous compound fermentation GO:0019668, cofermentation of pairs of amino acids GO:0019671, glutamate fermentation via mesaconate and citramalate GO:0019672, ethanol-acetate fermentation to butyrate and caproate GO:0019676, ammonia assimilation cycle GO:0019681, acetyl-CoA assimilation pathway GO:0031393, negative regulation of prostaglandin biosynthesis GO:0042343, indole glucosinolate metabolism GO:0042344, indole glucosinolate catabolism New term merges in biological_process ontology GO:0019644 has been merged into GO:0019643, reductive tricarboxylic acid cycle Term movements in biological_process ontology: Terms movements under GO Slim term 'reproduction ; GO:0000003' + GO:0001541, ovarian follicle development + GO:0001544, initiation of primordial ovarian follicle growth + GO:0001547, antral ovarian follicle growth + GO:0001551, ovarian follicle endowment + GO:0001553, luteinization + GO:0001554, luteolysis + GO:0007320, insemination + GO:0007321, sperm displacement + GO:0007565, pregnancy + GO:0007566, embryo implantation + GO:0007567, parturition + GO:0007595, lactation + GO:0007617, mating behavior + GO:0007618, mating + GO:0007619, courtship behavior + GO:0007620, copulation + GO:0007621, negative regulation of female receptivity + GO:0008049, male courtship behavior + GO:0008050, female courtship behavior + GO:0009793, embryonic development (sensu Magnoliophyta) + GO:0009829, cell wall modification during ripening + GO:0009835, ripening + GO:0009836, ripening, climacteric + GO:0009837, ripening, non-climacteric + GO:0009846, pollen germination + GO:0009856, pollination + GO:0009859, pollen hydration + GO:0009860, pollen tube growth + GO:0009865, pollen tube adhesion + GO:0009876, pollen adhesion + GO:0009900, dehiscence + GO:0009901, anther dehiscence + GO:0009942, longitudinal axis specification + GO:0009945, radial axis specification + GO:0009960, endosperm development + GO:0010047, fruit dehiscence + GO:0010064, embryonic shoot morphogenesis + GO:0010065, primary meristem histogenesis + GO:0010066, ground meristem histogenesis + GO:0010067, procambium histogenesis + GO:0010068, protoderm histogenesis + GO:0010069, zygote asymmetric cytokinesis (sensu Magnoliophyta) + GO:0010071, root meristem specification + GO:0010072, primary shoot apical meristem specification + GO:0010086, embryonic root morphogenesis + GO:0010162, seed dormancy + GO:0010183, pollen tube guidance + GO:0010214, seed coat development + GO:0010231, maintenance of dormancy + GO:0016542, male courtship behavior (sensu Insecta) + GO:0016543, male courtship behavior (sensu Insecta), orientation + GO:0016544, male courtship behavior (sensu Insecta), tapping + GO:0016545, male courtship behavior (sensu Insecta), wing vibration + GO:0016546, male courtship behavior (sensu Insecta), licking + GO:0018991, oviposition + GO:0019098, reproductive behavior + GO:0030437, sporulation (sensu Fungi) + GO:0030476, spore wall assembly (sensu Fungi) + GO:0030582, fruiting body formation + GO:0030583, fruiting body formation (sensu Bacteria) + GO:0030587, fruiting body formation (sensu Dictyosteliida) + GO:0031149, stalk cell differentiation + GO:0031150, stalk formation (sensu Dictyosteliida) + GO:0031152, aggregation during fruiting body formation + GO:0031153, slug formation during fruiting body formation + GO:0031154, culmination during fruiting body formation + GO:0031155, regulation of fruiting body formation + GO:0031156, regulation of fruiting body formation (sensu Dictyosteliida) + GO:0031157, regulation of aggregate size + GO:0031158, negative regulation of aggregate size + GO:0031159, positive regulation of aggregate size + GO:0031285, regulation of stalk cell differentiation + GO:0031286, negative regulation of stalk cell differentiation + GO:0031287, positive regulation of stalk cell differentiation + GO:0031288, fruiting body morphogenesis (sensu Dictyosteliida) + GO:0031321, prospore formation + GO:0031322, forespore-specific spindle pole body modification + GO:0042628, mating plug formation + GO:0042696, menarche + GO:0042697, menopause + GO:0042698, menstrual cycle + GO:0042699, follicle stimulating hormone signaling pathway + GO:0042700, luteinizing hormone signaling pathway + GO:0042701, progesterone secretion + GO:0042702, uterine wall growth + GO:0042703, menstruation + GO:0042704, uterine wall breakdown + GO:0042711, maternal behavior + GO:0042712, paternal behavior + GO:0042713, sperm ejaculation + GO:0043084, penile erection + GO:0045297, post-mating behavior + GO:0045433, male courtship behavior (sensu Insecta), song production + GO:0045434, negative regulation of female receptivity, post-mating + GO:0045924, regulation of female receptivity + GO:0045925, positive regulation of female receptivity + GO:0046008, regulation of female receptivity, post-mating + GO:0046009, positive regulation of female receptivity, post-mating + GO:0046662, regulation of oviposition + GO:0046692, sperm competition + GO:0046693, sperm storage + GO:0046694, sperm incapacitation + GO:0046697, decidualization + GO:0048042, regulation of oviposition, post-mating + GO:0048047, mating behavior, sex discrimination + GO:0048065, male courtship behavior (sensu Insecta), wing extension + GO:0048315, conidium formation + GO:0048316, seed development + GO:0048317, seed morphogenesis + GO:0048354, mucilage biosynthesis during seed coat development + GO:0048359, mucilage metabolism during seed coat development + GO:0048470, synergid degeneration + GO:0048508, embryonic meristem development + GO:0048544, recognition or rejection of self pollen + GO:0050876, reproductive physiological process Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975' + GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle + GO:0019681, acetyl-CoA assimilation pathway Terms movements under GO Slim term 'generation of precursor metabolites and energy ; GO:0006091' - GO:0019565, aerobic glycerol degradation + GO:0019681, acetyl-CoA assimilation pathway Terms movements under GO Slim term 'DNA metabolism ; GO:0006259' + GO:0007307, chorion gene amplification Terms movements under GO Slim term 'transcription ; GO:0006350' - GO:0000160, two-component signal transduction system (phosphorelay) - GO:0000161, MAPKKK cascade during osmolarity sensing - GO:0000167, activation of MAPKKK activity during osmolarity sensing - GO:0000168, activation of MAPKK activity during osmolarity sensing - GO:0000169, activation of MAPK activity during osmolarity sensing - GO:0000173, inactivation of MAPK activity during osmolarity sensing - GO:0000208, nuclear translocation of MAPK during osmolarity sensing - GO:0007234, osmosensory signaling pathway via two-component system - GO:0009866, induced systemic resistance, ethylene mediated signaling pathway - GO:0009871, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway - GO:0009873, ethylene mediated signaling pathway - GO:0010104, regulation of ethylene mediated signaling pathway - GO:0010105, negative regulation of ethylene mediated signaling pathway Terms movements under GO Slim term 'transport ; GO:0006810' + GO:0006118, electron transport Terms movements under GO Slim term 'signal transduction ; GO:0007165' - GO:0007204, elevation of cytoplasmic calcium ion concentration Terms movements under GO Slim term 'development ; GO:0007275' - GO:0000003, reproduction + GO:0000762, pheromone-induced unidirectional conjugation + GO:0000765, response to pheromone during pheromone-induced unidirectional conjugation + GO:0000766, adaptation to pheromone during pheromone-induced unidirectional conjugation + GO:0000905, fruiting body formation during asexual reproduction (sensu Fungi) + GO:0000909, fruiting body formation during sexual reproduction (sensu Fungi) + GO:0007116, regulation of cell budding - GO:0007320, insemination - GO:0007321, sperm displacement + GO:0007439, ectodermal gut development + GO:0009291, unidirectional conjugation + GO:0009558, cellularization of megagametophyte + GO:0030381, eggshell pattern formation (sensu Insecta) + GO:0030584, fruiting body formation (sensu Fungi) + GO:0031135, negative regulation of conjugation + GO:0031136, positive regulation of conjugation + GO:0031137, regulation of conjugation with cellular fusion + GO:0031138, negative regulation of conjugation with cellular fusion + GO:0031139, positive regulation of conjugation with cellular fusion + GO:0031140, induction of conjugation upon nutrient starvation + GO:0031141, induction of conjugation upon carbon starvation + GO:0031142, induction of conjugation upon nitrogen starvation - GO:0042628, mating plug formation - GO:0042713, sperm ejaculation + GO:0045781, negative regulation of cell budding + GO:0045782, positive regulation of cell budding - GO:0046692, sperm competition - GO:0046693, sperm storage - GO:0046694, sperm incapacitation + GO:0046999, regulation of conjugation Terms movements under GO Slim term 'physiological process ; GO:0007582' + GO:0007320, insemination + GO:0007321, sperm displacement + GO:0042628, mating plug formation + GO:0042713, sperm ejaculation + GO:0046692, sperm competition + GO:0046693, sperm storage + GO:0046694, sperm incapacitation Terms movements under GO Slim term 'behavior ; GO:0007610' + GO:0007320, insemination + GO:0007321, sperm displacement + GO:0046692, sperm competition + GO:0046693, sperm storage + GO:0046694, sperm incapacitation Terms movements under GO Slim term 'biological_process ; GO:0008150' + GO:0000003, reproduction Terms movements under GO Slim term 'metabolism ; GO:0008152' - GO:0009442, allantoin assimilation pathway - GO:0019648, formaldehyde assimilation via xylulose monophosphate cycle - GO:0019681, acetyl-CoA assimilation pathway Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0009442, allantoin assimilation pathway + GO:0019681, acetyl-CoA assimilation pathway Terms movements under GO Slim term 'biosynthesis ; GO:0009058' - GO:0006561, proline biosynthesis Terms movements under GO Slim term 'morphogenesis ; GO:0009653' + GO:0045445, myoblast differentiation + GO:0045661, regulation of myoblast differentiation + GO:0045662, negative regulation of myoblast differentiation + GO:0045663, positive regulation of myoblast differentiation Terms movements under GO Slim term 'embryonic development ; GO:0009790' - GO:0007439, ectodermal gut development - GO:0007440, foregut morphogenesis - GO:0007441, anterior midgut (ectodermal) morphogenesis - GO:0007442, hindgut morphogenesis - GO:0048567, ectodermal gut morphogenesis Terms movements under GO Slim term 'cell homeostasis ; GO:0019725' + GO:0007204, elevation of cytoplasmic calcium ion concentration Terms movements under GO Slim term 'cell differentiation ; GO:0030154' + GO:0007520, myoblast fusion + GO:0030239, myofibril assembly + GO:0030240, muscle thin filament assembly + GO:0030241, muscle thick filament assembly + GO:0045214, sarcomere organization New terms in cellular_component ontology (15 new terms) GO:0031511 GO:0005694 MAH D 1220237 Mis6 centromere subcomplex GO:0031512 GO:0005929 MAH D 1220646 motile primary cilium GO:0031513 GO:0005929 MAH D 1035336 nonmotile primary cilium GO:0031514 GO:0005929 MAH D 1035336 motile secondary cilium GO:0031515 GO:0005634 MAH D 1231152 tRNA (m1A) methyltransferase complex GO:0031518 GO:0005694 MAH D 1234901 CBF3 complex GO:0031519 GO:0005634 MAH D 1235960 PcG protein complex GO:0031520 GO:0005886 MAH D 1237426 plasma membrane of cell tip GO:0031521 GO:0005623 MAH D 1238360 spitzenkorper GO:0031522 GO:0005886 MAH D 1238462 Sec complex (sensu Bacteria) GO:0031523 GO:0005694 MAH D 1238923 Myb complex GO:0031526 GO:0005886 MAH D 1241629 brush border membrane GO:0031527 GO:0005886 MAH D 1241629 filopodium membrane GO:0031528 GO:0005886 MAH D 1241629 microvillus membrane GO:0031533 GO:0005634 MAH D 1234838 mRNA capping enzyme complex Term name changes in cellular_component ontology GO:0031205: Sec complex --> Sec complex (sensu Eukaryota) New definitions for cellular_component ontology terms (2 new definitions) GO:0005728, extrachromosomal rDNA circle GO:0005729, 2-micrometer circle DNA Term movements in cellular_component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' - GO:0031500, Tea1 cell-end complex Terms movements under GO Slim term 'cell ; GO:0005623' + GO:0005902, microvillus + GO:0005903, brush border + GO:0030175, filopodium Terms movements under GO Slim term 'nucleus ; GO:0005634' + GO:0005659, delta DNA polymerase complex + GO:0005660, delta-DNA polymerase cofactor complex Terms movements under GO Slim term 'cytoskeleton ; GO:0005856' + GO:0031500, Tea1 cell-end complex Terms movements under GO Slim term 'plasma membrane ; GO:0005886' - GO:0005902, microvillus - GO:0005903, brush border - GO:0030175, filopodium New terms in molecular_function ontology (34 new terms) GO:0031516 GO:0004872 MAH D 1234807 far-red light photoreceptor activity GO:0031517 GO:0004872 MAH D 1234810 red light photoreceptor activity GO:0031530 GO:0005102 MAH D 1229722 gonadotropin-releasing hormone receptor binding GO:0031531 GO:0005102 MAH D 1229722 thyrotropin-releasing hormone receptor binding GO:0031543 GO:0003824 MAH D 1243153 peptidyl-proline dioxygenase activity GO:0031544 GO:0003824 MAH D 1243153 peptidyl-proline 3-dioxygenase activity GO:0031545 GO:0003824 MAH D 1243153 peptidyl-proline 4-dioxygenase activity GO:0031546 GO:0005102 MAH D 1235954 brain-derived neurotrophic factor receptor binding GO:0043422 GO:0005515 JL D 1234852 protein kinase B binding GO:0043423 GO:0005515 JL D 1234852 3-phosphoinositide-dependent protein kinase binding GO:0043424 GO:0005515 JL D 1234852 protein histidine kinase binding GO:0043425 GO:0005515 JL D 1230800 bHLH transcription factor binding GO:0043426 GO:0005515 JL D 1230800 MRF binding GO:0043428 GO:0016740 JL D 1161532 2-heptaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO:0043429 GO:0016740 JL D 1161532 2-nonaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO:0043430 GO:0016740 JL D 1161532 2-decaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity GO:0043431 GO:0016740 JL D 1161532 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone methyltransferase activity GO:0048602 GO:0005515 JIC D 1230965 fibroblast growth factor 1 binding GO:0048603 GO:0005515 JIC D 1230965 fibroblast growth factor 2 binding GO:0048604 GO:0005515 JIC D 1230965 fibroblast growth factor 3 binding GO:0048605 GO:0005515 JIC D 1230965 fibroblast growth factor 4 binding GO:0048606 GO:0005515 JIC D 1230965 fibroblast growth factor 5 binding GO:0048607 GO:0005515 JIC D 1230965 fibroblast growth factor 6 binding GO:0051471 GO:0005215 AI D 1124304 ectoine transporter activity GO:0051474 GO:0005215 AI D 1124304 glucosylglycerol transporter activity GO:0051477 GO:0005215 AI D 1124304 mannosylglycerate transporter activity GO:0051498 GO:0003824 AI D 1240879 syn-copalyl diphosphate synthase activity GO:0051499 GO:0016787 AI D 1240854 D-aminoacyl-tRNA deacylase activity GO:0051500 GO:0016787 AI D 1240854 D-tyrosyl-tRNA(Tyr) deacylase activity GO:0051505 GO:0016740 AI D 1238299 cholesterol UDP-glucosyltransferase activity GO:0051506 GO:0016740 AI D 1238299 ergosterol UDP-glucosyltransferase activity GO:0051507 GO:0016740 AI D 1238299 beta-sitosterol UDP-glucosyltransferase activity GO:0051508 GO:0016740 AI D 1238299 stigmasterol UDP-glucosyltransferase activity GO:0051509 GO:0016740 AI D 1238299 tomatidine UDP-glucosyltransferase activity New obsoletions in molecular_function ontology GO:0004050, apyrase activity: represents a gene product which can catalyze two reactions. Term name changes in molecular_function ontology GO:0004020: adenylyl-sulfate kinase activity --> adenylylsulfate kinase activity GO:0004550: nucleoside-diphosphate kinase activity --> nucleoside diphosphate kinase activity GO:0004673: protein-histidine kinase activity --> protein histidine kinase activity GO:0004687: myosin-light-chain kinase activity --> myosin light chain kinase activity GO:0004749: ribose-phosphate diphosphokinase activity --> ribose phosphate diphosphokinase activity GO:0005403: hydrogen:sugar symporter-transporter activity --> hydrogen:sugar symporter activity GO:0008256: protein-histidine pros-kinase activity --> protein histidine pros-kinase activity GO:0008257: protein-histidine tele-kinase activity --> protein histidine tele-kinase activity GO:0008353: [RNA-polymerase]-subunit kinase activity --> RNA polymerase subunit kinase activity GO:0008440: inositol-trisphosphate 3-kinase activity --> inositol trisphosphate 3-kinase activity GO:0008904: hygromycin-B kinase activity --> hygromycin B kinase activity GO:0009030: thiamin-phosphate kinase activity --> thiamin phosphate kinase activity GO:0015306: sialate transporter activity --> sialate:cation symporter activity GO:0016905: myosin-heavy-chain kinase activity --> myosin heavy chain kinase activity GO:0017046: polypeptide hormone binding --> peptide hormone binding GO:0018110: histone-arginine kinase activity --> histone arginine kinase activity GO:0035174: histone-serine kinase activity --> histone serine kinase activity GO:0035175: histone-serine kinase activity (H3-S10 specific) --> histone serine kinase activity (H3-S10 specific) GO:0035184: histone-threonine kinase activity --> histone threonine kinase activity GO:0043364: catalysis of free-radical formation --> catalysis of free radical formation GO:0046899: nucleoside-triphosphate-adenylate kinase activity --> nucleoside triphosphate adenylate kinase activity GO:0047325: inositol-tetrakisphosphate 1-kinase activity --> inositol tetrakisphosphate 1-kinase activity GO:0047326: inositol-tetrakisphosphate 5-kinase activity --> inositol tetrakisphosphate 5-kinase activity GO:0047696: beta-adrenergic-receptor kinase activity --> beta-adrenergic receptor kinase activity GO:0047758: branched-chain-fatty-acid kinase activity --> branched-chain fatty acid kinase activity GO:0047887: farnesyl-diphosphate kinase activity --> farnesyl diphosphate kinase activity GO:0050063: low-density-lipoprotein kinase activity --> low-density lipoprotein kinase activity GO:0050145: nucleoside-phosphate kinase activity --> nucleoside phosphate kinase activity GO:0050331: thiamin-diphosphate kinase activity --> thiamin diphosphate kinase activity GO:0050516: inositol-polyphosphate multikinase activity --> inositol polyphosphate multikinase activity GO:0050517: inositol-hexakisphosphate kinase activity --> inositol hexakisphosphate kinase activity GO:0051428: polypeptide hormone receptor binding --> peptide hormone receptor binding New definitions for molecular_function ontology terms (9 new definitions) GO:0004659, prenyltransferase activity GO:0016722, oxidoreductase activity, oxidizing metal ions GO:0016723, oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor GO:0016724, oxidoreductase activity, oxidizing metal ions, oxygen as acceptor GO:0019784, NEDD8-specific protease activity GO:0019785, ISG15-specific protease activity GO:0019786, APG8-specific protease activity GO:0019798, procollagen-proline dioxygenase activity GO:0030946, protein tyrosine phosphatase activity, metal-dependent SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1028453 Fixed cofactors, coenzymes, vitamins and prosthetic groups GO:0051180-51202 1106622 Fixed Transporter activity: new is-a links from GONG [none] 1153592 Fixed inconsistencies? N-O linked glycosylation GO:0043412-43413 1161532 Accepted ntr: ubiquinone biosynthesis methyltransferases GO:0043428-43431 1163973 Accepted transport & electron transport [none] 1170007 Accepted relationship of growth to development [none] 1181393 Fixed assimiltion common def and parent [none] 1185976 Accepted embryonic morphogenesis GO:0048565-48570 GO:0048598 GO:0048611-48621 1190985 Fixed missing parent?: apyrase activity [none] 1220237 Accepted ntr: Mis6 centromere subcomplex GO:0031511 1220646 Accepted Cilium terms GO:0031512-31512 1224241 Accepted reproductive developmental process GO:0048608-48610 1226061 Fixed unconventional myosin, GO:0016461, comment [none] 1227102 Accepted aimed at [none] 1229575 Accepted myoblast cell fate determination GO:0048625-48628 1229722 Accepted new child of "polypeptide hormone receptor bindng" GO:0031530-31531 1230325 Accepted detection of hormone stimulus GO:0051467 GO:0051468 1230800 Accepted bHLH transcription factor binding GO:0043425-43426 1230895 Fixed Transporter activity: new is-a links from GONG (last chunk) [none] 1230965 Accepted children of fibroblast growth factor binding GO:0048602-48607 1231152 Accepted tRNA (m1A) methyltransferase complex GO:0031515 1231161 Fixed positive regulation of cytosolic calcium ion concentration GO:0051480-51482 1232191 Works For Me update def: protein neddylation [none] 1232200 Accepted ntr: general "methylation" term GO:0043414 1232212 Accepted missing parent: calcium transporting ATPase activity [none] 1232667 Accepted non-mevalonate pathway GO:0051483-51486 1232819 Duplicate protein processing [none] 1233313 Accepted insemination [none] 1233456 Fixed mp: signal recognition particle (sensu Eukaryota) [none] 1233503 Accepted mp: nuclear pore [none] 1233827 Accepted synonym request: GO:0009051 [none] 1234188 Accepted sporulation GO:0048622 1234238 Duplicate Addition of existing terms to existing branches [none] 1234454 Accepted synonym request: GO:0003987 [none] 1234669 Accepted regulation of skeletal muscle regeneration GO:0043415-43417 1234700 Accepted mp: delta DNA polymerase complex [none] 1234744 Works For Me mp: ubiqutin dependent protein catabolism [none] 1234803 Accepted GO:0000160 : two-component signal transduction system (phosp [none] 1234807 Accepted far red light photoreceptor activity GO:0031516 1234810 Accepted red light photoreceptor activity GO:0031517 1234838 Accepted ntr: mRNA capping enzyme complex GO:0031533 1234852 Accepted ntr: protein kinase binding GO:0043422-43424 1234901 Accepted CBF3 complex GO:0031518 1235954 Accepted BDNF related terms GO:0031546-31553 1235960 Accepted PcG protein complex ; GO:NEW GO:0031519 1236014 Accepted new children: microtubule sliding GO:0031534-31535 1236064 Duplicate BDNF related terms [none] 1236086 Works For Me difference between?G-protein signaling types [none] 1236129 Fixed mp: myosin [none] 1236178 Fixed tpv: egulation of cyclin dependent protein kinase activity [none] 1236959 Accepted negative regulation of transcriopton factor activity GO:0043433 1237426 Accepted ntr: plasma membrane of cell tip GO:0031520 1237434 Accepted response to peptide hormone stimulus GO:0043434-43435 1238270 Accepted ubiquitination GO:0043432 1238289 Fixed typo in definition of GO:7396? [none] 1238360 Accepted Spitzenkörper GO:0031521 1238462 Accepted Sec complex (sensu Bacteria) GO:0031522 1238923 Accepted ntr: Myb complex GO:0031523 1238949 Fixed reductive tricarboxylic acid cycle ; GO:0019643 merge [none] 1238967 Accepted new process term request - adenine nucleotide transport GO:0051503 1240136 Accepted move NETO GO:0051510-51524 1240167 Fixed add parent to Tea1 cell-end complex [none] 1240229 Accepted organize vs organise [none] 1240516 Accepted ntr: transcriptional attenuation GO:0031554-31556 1240755 Accepted menthol biosynthesis GO:0031524-31525 1240760 Accepted diterpene phytoalexins biosynthesis GO:0051501-51502 GO:0051504 1240854 Accepted ntr: D-tyrosyl-tRNA(Tyr) deacylase GO:0051499-51500 1240879 Accepted diterpene cyclase activity GO:0051498 1241554 Accepted negative/positive regulation of stress fiber formation GO:0051492-51497 1241629 Fixed synonym for ruffle and more children for cell projection? GO:0031526-31528 1241635 Accepted process term: ruffle organisation and biogenesis GO:0031529 1241676 Accepted positive/negative regulation of filopodium formation GO:0051489-51491 1241686 Accepted actin cytoskeleton remodeling [none] 1242927 Duplicate child of "regulation of neuronal synaptic plasticity" [none] 1242939 Duplicate child of "regulation of neuronal synaptic plasticity" [none] 1243107 Accepted peripheral cytoplasm [none] 1243153 Accepted ntr: HIF-type prolyl 4-hydroxylase GO:0031543-31545 1243216 Accepted ntr: postive regulation of exit from mitosis GO:0031536 1244423 Accepted regulation of anthocyanin biosynthesis GO:0031537-31542 Statistics: biological_process: 9960 terms, 97.6% defined (9718 terms defined) cellular_component: 1694 terms, 94.9% defined (1607 terms defined) molecular_function: 7593 terms, 91.3% defined (6932 terms defined) Total: 19247 terms, 94.9% defined (18257 terms defined) Term errors GO:0005842, cytosolic large ribosomal subunit (sensu Eukaryota) - definition removed