GO Monthly Release Notes for March 2002
========================
Generated on Mon Oct 27 12:27:33 2003

Files used:
component	old: 2.141	new: 2.154
function 	old: 2.244	new: 2.278
process  	old: 2.261	new: 2.296
definitions	old: 2.313	new: 2.374
GO Slim: 	Generic.0208

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
               (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in component ontology (14 new terms)
GO:0000311	GO:0005840	SGD	D	      	plastid large ribosomal subunit
          	GO:0009536
GO:0000312	GO:0005840	SGD	D	      	plastid small ribosomal subunit
          	GO:0009536
GO:0000313	GO:0005840	SGD	D	      	organellar ribosome
GO:0000314	GO:0005840	SGD	D	      	organellar small ribosomal subunit
GO:0000315	GO:0005840	SGD	D	      	organellar large ribosomal subunit
GO:0001673	GO:0005634	MGI	D	      	male germ cell nucleus
GO:0001674	GO:0005634	MGI	D	      	female germ cell nucleus
GO:0009530	GO:0005576	TAIR	D	      	primary cell wall
          	GO:0005618
GO:0009531	GO:0005576	TAIR	D	      	secondary cell wall
          	GO:0005618
GO:0009547	GO:0005840	TAIR	D	      	plastid ribosome
          	GO:0009536
GO:0042170	GO:0009536	JL	D	      	plastid membrane
GO:0042175	GO:0005623	JL	D	      	nuclear envelope-endoplasmic reticulum network
GO:0045009	GO:0016023	AI	D	      	chitosome (sensu Fungi)
GO:0045025	GO:0005739	AI	D	      	mitochondrial degradosome


Term name changes in component ontology
GO:0005830: cytosolic ribosome --> cytosolic ribosome (sensu Eukarya)
GO:0005842: 60S ribosomal subunit --> cytosolic large ribosomal subunit (sensu Eukarya)
GO:0005843: 40S ribosomal subunit --> cytosolic small ribosomal subunit (sensu Eukarya)
GO:0008280: 9S cohesin --> cohesin core heterodimer
GO:0008621: 8S condensin --> condensin core heterodimer
GO:0009281: prokaryotic ribosome --> cytosolic ribosome (sensu Bacteria)
GO:0009282: prokaryotic 50S ribosomal subunit --> cytosolic large ribosomal subunit (sensu Bacteria)
GO:0009283: prokaryotic 30S ribosomal subunit --> cytosolic small ribosomal subunit (sensu Bacteria)


New definitions for component ontology terms (3 new definitions)
GO:0005837, 26S proteasome
GO:0005839, 20S core proteasome
GO:0005842, cytosolic large ribosomal subunit (sensu Eukarya)


New term merges in component ontology
GO:0008279 has been merged into GO:0008278, cohesin
GO:0008620 has been merged into GO:0005676, condensin
GO:0009520 has been merged into GO:0012511, lipid storage body (sensu Viridiplantae)
GO:0030498 has been merged into GO:0009282, cytosolic large ribosomal subunit (sensu Bacteria)
GO:0030499 has been merged into GO:0009283, cytosolic small ribosomal subunit (sensu Bacteria)


Term movements in component ontology:
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0005637, nuclear inner membrane
+ GO:0005638, lamin
- GO:0005778, peroxisomal membrane
- GO:0005779, integral peroxisomal membrane
- GO:0005780, intra-peroxisomal peripheral membrane

Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
+ GO:0005778, peroxisomal membrane
+ GO:0005779, integral peroxisomal membrane
+ GO:0005780, intra-peroxisomal peripheral membrane



New terms in function ontology (32 new terms)
GO:0000293	GO:0003824	SGD	D	      	ferric-chelate reductase
GO:0000309	GO:0003824	SGD	D	      	nicotinamide-nucleotide adenylyltransferase
GO:0000310	GO:0003824	SGD	D	      	xanthine phosphoribosyltransferase
GO:0001670	GO:0004872	MGI	D	      	dopamine D2 receptor
GO:0001671	GO:0030234	MGI	D	      	ATPase stimulator
GO:0004166	GO:0003824	OS	D	      	dolichyl-phosphate alpha-N-acetylglucosaminyltransferase
GO:0008968	GO:0003824	FB	D	      	phosphoheptose isomerase
GO:0009540	GO:0003824	TAIR	D	      	zeaxanthin epoxidase
GO:0030570	GO:0003824	MAH	D	      	pectate lyase
GO:0030572	GO:0003824	MAH	D	525530	phosphatidyltransferase
GO:0030580	GO:0003824	MAH	D	528932	quinone cofactor methyltransferase
GO:0030585	GO:0003824	MAH	D	529396	phosphoenolpyruvate carboxykinase (diphosphate)
GO:0030586	GO:0003824	MAH	D	529029	[methionine synthase]-cobalamin methyltransferase (cob(II)alamin reducing)
          	GO:0005489
GO:0030591	GO:0003824	MAH	D	531922	NAD DNA ADP-ribosyltransferase
GO:0030594	GO:0004872	MAH	D	526506	neurotransmitter receptor
          	GO:0005488
GO:0042162	GO:0003677	JL	D	      	telomeric DNA binding
GO:0042163	GO:0005515	JL	D	526459	interleukin-12 beta subunit binding
GO:0042164	GO:0005515	JL	D	526459	interleukin-12 alpha subunit binding
GO:0042165	GO:0005488	JL	D	526961	neurotransmitter binding
GO:0042166	GO:0005488	JL	D	526961	acetylcholine binding
GO:0042169	GO:0005515	JL	D	      	SH2-domain binding
GO:0042171	GO:0003824	JL	D	      	lysophosphatidic acid acyltransferase
GO:0042172	GO:0003824	JL	D	      	arginyl-tRNA-protein transferase
GO:0045012	GO:0004872	AI	D	      	MHC class II receptor
GO:0045015	GO:0004872	AI	D	      	HDEL receptor
GO:0045024	GO:0008233	AI	D	      	peptidylglutamyl-peptide hydrolyzing enzyme
GO:0045027	GO:0003677	AI	D	      	DNA end binding
GO:0045028	GO:0004872	AI	D	      	purinergic nucleotide receptor, G-protein coupled
GO:0045029	GO:0004872	AI	D	598254	UDP-activated nucleotide receptor
GO:0045030	GO:0004872	AI	D	      	UTP-activated nucleotide receptor
GO:0045031	GO:0004872	AI	D	      	ATP-activated nucleotide receptor
GO:0045032	GO:0004872	AI	D	      	ADP-activated nucleotide receptor


New obsoletions in function ontology
GO:0001608, nucleotide receptor, G-protein coupled: No reason given.
GO:0008337, selectin: No reason given.


Term name changes in function ontology
GO:0001614: purinoceptor --> purinergic nucleotide receptor
GO:0003954: NADH dehydrogenase --> NADH2 dehydrogenase
GO:0003955: NAD(P)H dehydrogenase (quinone) --> NAD(P)H2 dehydrogenase (quinone)
GO:0003959: NADPH dehydrogenase --> NADPH2 dehydrogenase
GO:0004379: glycylpeptide N-tetradecanoylytansferase --> glycylpeptide N-tetradecanoyltransferase
GO:0004613: phosphoenolpyruvate carboxylase (GTP) --> phosphoenolpyruvate carboxykinase (GTP)
GO:0008137: NADH dehydrogenase (ubiquinone) --> NADH2 dehydrogenase (ubiquinone)
GO:0008501: adenosine receptor --> adenosine nucleotide receptor
GO:0008751: NAD(P)H dehydrogenase --> NAD(P)H2 dehydrogenase
GO:0008752: NAD(P)H dehydrogenase (FMN) --> NAD(P)H2 dehydrogenase (FMN)
GO:0008753: NADPH dehydrogenase (quinone) --> NADPH2 dehydrogenase (quinone)
GO:0008942: nitrite reductase (NAD(P)H) --> nitrite reductase [NAD(P)H2]
GO:0015126: canicular bile acid transporter --> canalicular bile acid transporter
GO:0016656: monodehydroascorbate reductase (NADH) --> monodehydroascorbate reductase (NADH2)
GO:0018537: methylenetetrahydromethanopterin reductase --> coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase
GO:0018541: p-benzoquinone reductase --> p-benzoquinone reductase (NADPH)
GO:0018836: organomercurial lyase --> alkylmercury lyase


New definitions for function ontology terms (25 new definitions)
GO:0001588, dopamine D1 receptor-like receptor
GO:0001589, dopamine D5 receptor
GO:0001590, dopamine D1 receptor
GO:0001591, dopamine D2 receptor-like receptor
GO:0001592, dopamine D3 receptor
GO:0001593, dopamine D4 receptor
GO:0004263, chymotrypsin
GO:0004515, nicotinate-nucleotide adenylyltransferase
GO:0004612, phosphoenolpyruvate carboxykinase (ATP)
GO:0004613, phosphoenolpyruvate carboxykinase (GTP)
GO:0004620, phospholipase
GO:0004622, lysophospholipase
GO:0004623, phospholipase A2
GO:0004629, phospholipase C
GO:0004630, phospholipase D
GO:0004952, dopamine receptor
GO:0008143, poly(A) binding
GO:0008408, 3'-5' exonuclease
GO:0008409, 5'-3' exonuclease
GO:0008808, cardiolipin synthase
GO:0008964, phosphoenolpyruvate carboxylase
GO:0008970, phospholipase A1
GO:0016298, lipase
GO:0018537, coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase
GO:0018836, alkylmercury lyase


Term movements in function ontology:
Terms movements under GO Slim term 'receptor ; GO:0004872'
- GO:0001608, nucleotide receptor, G-protein coupled

Terms movements under GO Slim term 'cell adhesion molecule ; GO:0005194'
- GO:0008337, selectin

Terms movements under GO Slim term 'ligand binding or carrier ; GO:0005488'
+ GO:0004889, nicotinic acetylcholine-activated cation-selective channel
+ GO:0004890, gamma-aminobutyric acid-inhibited chloride channel
+ GO:0004965, GABA-B receptor
+ GO:0004981, muscarinic acetylcholine receptor
+ GO:0008503, benzodiazepine receptor
+ GO:0015464, acetylcholine receptor
+ GO:0016907, G-protein coupled acetylcholine receptor
+ GO:0016917, GABA receptor
+ GO:0017164, nicotinic acetylcholine receptor-associated protein

Terms movements under GO Slim term 'carbohydrate binding ; GO:0030246'
- GO:0008337, selectin



New terms in process ontology (93 new terms)
GO:0001672	GO:0006259	MGI	D	      	regulation of chromatin metabolism
          	GO:0016043
GO:0001675	GO:0000003	MGI	D	      	acrosome formation
GO:0030571	GO:0007049	MAH	D	      	cell cycle arrest (sensu Saccharomyces)
          	GO:0007275
          	GO:0008151
          	GO:0009605
          	GO:0009628
GO:0030573	GO:0006629	MAH	D	526335	bile acid catabolism
GO:0030574	GO:0008152	MAH	D	526022	collagen degradation
          	GO:0009056
GO:0030575	GO:0016043	MAH	D	      	nuclear body organization and biogenesis
GO:0030576	GO:0016043	MAH	D	      	Cajal body organization and biogenesis
GO:0030577	GO:0016043	MAH	D	      	Lands organization and biogenesis
GO:0030578	GO:0016043	MAH	D	      	PML body organization and biogenesis
GO:0030579	GO:0007165	MAH	D	      	SMAD protein degradation
          	GO:0008152
          	GO:0009056
GO:0030581	GO:0015031	MAH	D	528457	host cell protein traffic
GO:0030582	GO:0007275	MAH	D	      	fruiting body formation
GO:0030583	GO:0006950	MAH	D	526350	fruiting body formation (sensu Bacteria)
          	GO:0007275
          	GO:0009607
GO:0030584	GO:0007275	MAH	D	526350	fruiting body formation (sensu Fungi)
GO:0030587	GO:0006950	MAH	D	526350	fruiting body formation (sensu Dictyostelium)
          	GO:0007275
          	GO:0009607
GO:0030588	GO:0007275	MAH	D	531535	pseudocleavage
GO:0030589	GO:0007275	MAH	D	531535	pseudocleavage (sensu Insecta)
GO:0030590	GO:0007275	MAH	D	531535	pseudocleavage (sensu Nematoda)
GO:0030592	GO:0006259	MAH	D	531922	DNA ADP-ribosylation
GO:0030593	GO:0008151	MAH	D	526986	neutrophil chemotaxis
GO:0030595	GO:0008151	MAH	D	532036	immune cell chemotaxis
GO:0042157	GO:0006629	JL	D	      	lipoprotein metabolism
          	GO:0019538
GO:0042158	GO:0006412	JL	D	      	lipoprotein biosynthesis
          	GO:0006629
          	GO:0009058
          	GO:0019538
GO:0042159	GO:0006629	JL	D	      	lipoprotein catabolism
          	GO:0009056
          	GO:0019538
GO:0042160	GO:0006629	JL	D	      	lipoprotein modification
          	GO:0019538
GO:0042161	GO:0006464	JL	D	      	lipoprotein oxidation
          	GO:0006629
          	GO:0019538
GO:0042167	GO:0006731	JL	D	      	heme catabolism
          	GO:0009056
GO:0042168	GO:0006731	JL	D	      	heme metabolism
GO:0042173	GO:0008151	JL	D	      	regulation of sporulation
GO:0042174	GO:0008151	JL	D	      	inhibition of sporulation
GO:0042176	GO:0008152	JL	D	      	regulation of protein degradation
          	GO:0009056
GO:0042177	GO:0008152	JL	D	      	inhibition of protein degradation
          	GO:0009056
GO:0042178	GO:0008152	JL	D	      	xenobiotic catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042179	GO:0008152	JL	D	      	nicotine biosynthesis
          	GO:0009058
          	GO:0019748
GO:0042180	GO:0008152	JL	D	      	ketone metabolism
GO:0042181	GO:0008152	JL	D	      	ketone biosynthesis
          	GO:0009058
GO:0042182	GO:0008152	JL	D	      	ketone catabolism
          	GO:0009056
GO:0042183	GO:0008152	JL	D	      	formate catabolism
          	GO:0009056
GO:0042184	GO:0008152	JL	D	      	xylene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042185	GO:0008152	JL	D	      	m-xylene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042186	GO:0008152	JL	D	      	o-xylene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042187	GO:0008152	JL	D	      	p-xylene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042188	GO:0008152	JL	D	      	1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane catabolism
          	GO:0009605
          	GO:0009628
GO:0042189	GO:0008152	JL	D	      	vanillin biosynthesis
GO:0042190	GO:0008152	JL	D	      	vanillin catabolism
GO:0042191	GO:0008152	JL	D	      	methylmercury metabolism
GO:0042192	GO:0008152	JL	D	      	methylmercury biosynthesis
GO:0042193	GO:0008152	JL	D	      	methylmercury catabolism
GO:0042194	GO:0008152	JL	D	      	quinate biosynthesis
          	GO:0009058
GO:0042195	GO:0008152	JL	D	      	aerobic gallate catabolism
          	GO:0009056
GO:0042196	GO:0008152	JL	D	      	chlorinated hydrocarbon metabolism
          	GO:0009605
          	GO:0009628
GO:0042197	GO:0008152	JL	D	      	halogenated hydrocarbon metabolism
          	GO:0009605
          	GO:0009628
GO:0042198	GO:0008152	JL	D	      	nylon metabolism
          	GO:0009605
          	GO:0009628
GO:0042199	GO:0008152	JL	D	      	cyanuric acid metabolism
          	GO:0009605
          	GO:0009628
GO:0042200	GO:0008152	JL	D	      	cyanuric acid catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042201	GO:0008152	JL	D	      	N-cyclopropylmelamine metabolism
          	GO:0009605
          	GO:0009628
GO:0042202	GO:0008152	JL	D	      	N-cyclopropylmelamine catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042203	GO:0008152	JL	D	      	toluene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042204	GO:0008152	JL	D	      	s-triazine compound catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042205	GO:0008152	JL	D	      	chlorinated hydrocarbon catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042206	GO:0008152	JL	D	      	halogenated hydrocarbon catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042207	GO:0008152	JL	D	      	styrene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042208	GO:0008152	JL	D	      	propylene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042209	GO:0008152	JL	D	      	orcinol catabolism
          	GO:0009056
GO:0042210	GO:0008152	JL	D	      	catabolism of octamethylcyclotetrasiloxane to dimethylsilanediol
          	GO:0009605
          	GO:0009628
GO:0042211	GO:0008152	JL	D	      	catabolism of dimethylsilanediol
          	GO:0009605
          	GO:0009628
GO:0042212	GO:0008152	JL	D	      	cresol metabolim
          	GO:0009605
          	GO:0009628
GO:0042213	GO:0008152	JL	D	      	m-cresol catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0042214	GO:0008152	JL	D	      	terpene metabolism
GO:0042215	GO:0008152	JL	D	      	anaerobic phenol metabolism
GO:0042216	GO:0008152	JL	D	      	phenanthrene catabolism
          	GO:0009056
          	GO:0009605
          	GO:0009628
GO:0045001	GO:0006259	AI	D	      	intrastrand crosslink repair
GO:0045002	GO:0006259	AI	D	      	double-strand break repair via single-strand annealing
GO:0045003	GO:0006259	AI	D	      	double-strand break repair via synthesis-dependent strand annealing
GO:0045004	GO:0006259	AI	D	      	DNA replication proofreading
          	GO:0007049
GO:0045005	GO:0006259	AI	D	      	maintenance of fidelity during DNA dependent DNA replication
          	GO:0007049
GO:0045006	GO:0006259	AI	D	      	DNA deamination
GO:0045007	GO:0006259	AI	D	      	depurination
GO:0045008	GO:0006259	AI	D	      	depyrimidination
GO:0045010	GO:0007010	AI	D	      	actin nucleation
GO:0045011	GO:0007010	AI	D	      	actin cable assembly
GO:0045013	GO:0006350	AI	D	      	carbon catabolite repression (sensu Bacillus)
GO:0045014	GO:0006350	AI	D	      	glucose repression (sensu Bacillus)
GO:0045016	GO:0006810	AI	D	      	mitochondrial magnesium ion transport
GO:0045017	GO:0009058	AI	D	      	glycerolipid biosynthesis
GO:0045018	GO:0006996	AI	D	      	retrograde transport from the vacuole
GO:0045019	GO:0008152	AI	D	      	inhibition of nitric oxide biosynthesis
          	GO:0009058
GO:0045020	GO:0006259	AI	D	      	error-prone DNA repair
GO:0045021	GO:0006259	AI	D	      	error-free DNA repair
GO:0045022	GO:0006996	AI	D	533087	early endosome to late endosome transport
          	GO:0015031
GO:0045023	GO:0007049	AI	D	      	G0 to G1 transition
GO:0045026	GO:0008151	AI	D	533253	plasma membrane fusion
GO:0045033	GO:0006996	AI	D	535198	peroxisome inheritance


Term name changes in process ontology
GO:0007001: chromosome organization and biogenesis --> chromosome organization and biogenesis (sensu Eukarya)
GO:0015722: canicular bile acid transport --> canalicular bile acid transport
GO:0018907: dimethyl sulfoxide --> dimethyl sulfoxide metabolism
GO:0018956: phenanthrene (9R,10R) metabolism --> phenanthrene catabolism via trans-9(R),10(R)-dihydrodiolphenanthrene
GO:0018957: phenanthrene (9S,10S) metabolism --> phenanthrene catabolism via trans-9(S),10(S)-dihydrodiolphenanthrene
GO:0018965: S-triazine metabolism --> s-triazine compound metabolism


New definitions for process ontology terms (101 new definitions)
GO:0000012, single-strand break repair
GO:0006266, DNA ligation
GO:0006281, DNA repair
GO:0006283, transcription-coupled repair
GO:0006284, base-excision repair
GO:0006285, base-excision repair, AP site formation
GO:0006286, base-excision repair, base-free sugar-phosphate removal
GO:0006287, base-excision repair, gap-filling
GO:0006288, base-excision repair, DNA ligation
GO:0006289, nucleotide-excision repair
GO:0006290, pyrimidine-dimer repair
GO:0006291, pyrimidine-dimer repair, DNA damage excision
GO:0006292, pyrimidine-dimer repair, DNA damage recognition
GO:0006297, pyrimidine-dimer repair, DNA gap filling
GO:0006298, mismatch repair
GO:0006299, short patch mismatch repair system
GO:0006300, long patch mismatch repair system
GO:0006301, post-replication repair
GO:0006302, double-strand break repair
GO:0006303, double-strand break repair via nonhomologous end-joining
GO:0006305, DNA alkylation
GO:0006307, DNA de-alkylation
GO:0006310, DNA recombination
GO:0006311, gene conversion
GO:0006313, DNA transposition
GO:0006628, mitochondrial translocation
GO:0006778, porphyrin metabolism
GO:0006779, porphyrin biosynthesis
GO:0006783, heme biosynthesis
GO:0006787, porphyrin catabolism
GO:0006807, nitrogen metabolism
GO:0006945, nuclear fusion during karogamy
GO:0007050, cell cycle arrest
GO:0007335, karyogamy
GO:0009307, DNA restriction
GO:0015994, chlorophyll metabolism
GO:0015995, chlorophyll biosynthesis
GO:0015996, chlorophyll catabolism
GO:0016924, double-strand break repair via homologous recombination
GO:0018867, alpha-pinene metabolism
GO:0018868, 2-aminobenzenesulfonate metabolism
GO:0018871, 1-aminocyclopropane-1-carboxylate metabolism
GO:0018873, atrazine metabolism
GO:0018882, (+)-camphor metabolism
GO:0018885, carbon tetrachloride metabolism
GO:0018889, 2-chloro-N-isopropylacetanilide metabolism
GO:0018899, 1,2-dichloroethane metabolism
GO:0018901, 2,4-dichlorophenoxyacetic acid metabolism
GO:0018902, 1,3-dichloro-2-propanol metabolism
GO:0018903, 1,3-dichloropropene metabolism
GO:0018917, fluorene metabolism
GO:0018918, gallate metabolism
GO:0018920, glyphosate metabolism
GO:0018922, iprodione metabolism
GO:0018923, limonene metabolism
GO:0018924, mandelate metabolism
GO:0018925, m-cresol metabolism
GO:0018928, methyl ethyl ketone metabolism
GO:0018937, nitroglycerin metabolism
GO:0018940, orcinol metabolism
GO:0018945, organosilicone metabolism
GO:0018946, aerobic organosilicone metabolism
GO:0018947, anaerobic organosilicone metabolism
GO:0018948, xylene metabolism
GO:0018949, m-xylene metabolism
GO:0018950, o-xylene metabolism
GO:0018951, p-xylene metabolism
GO:0018952, parathion metabolism
GO:0018955, phenanthrene metabolism
GO:0018956, phenanthrene catabolism via trans-9(R),10(R)-dihydrodiolphenanthrene
GO:0018957, phenanthrene catabolism via trans-9(S),10(S)-dihydrodiolphenanthrene
GO:0018958, phenol metabolism
GO:0018959, aerobic phenol metabolism
GO:0018960, 4-nitrophenol metabolism
GO:0018961, pentachlorophenol metabolism
GO:0018963, phthalate metabolism
GO:0018964, propylene metabolism
GO:0018965, s-triazine compound metabolism
GO:0018966, styrene metabolism
GO:0018969, thiocyanate metabolism
GO:0018970, toluene metabolism
GO:0018976, 1,2,3-tribromopropane metabolism
GO:0018977, 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
GO:0018979, trichloroethylene metabolism
GO:0018981, triethanolamine metabolism
GO:0018982, vanillin metabolism
GO:0019328, anaerobic gallate catabolism
GO:0019336, phenol catabolism
GO:0019339, parathion catabolism
GO:0019381, atrazine catabolism
GO:0019383, (+)-camphor catabolism
GO:0019396, gallate catabolism
GO:0019397, gallate catabolism, via 2-pyrone-4,6-dicarboxylate
GO:0019398, gallate catabolism, via 4-carboxy-2-hydroxhexa-2,3-dienedioate
GO:0019490, 2-aminobenzenesulfonate desulfonation
GO:0019623, atrazine catabolism to urea
GO:0019624, atrazine catabolism to isopropylamine
GO:0019625, atrazine catabolism to cyanuric acid
GO:0019630, quinate metabolism
GO:0019631, quinate catabolism
GO:0019637, organophosphate metabolism


Term movements in process ontology:
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
+ GO:0006298, mismatch repair
+ GO:0006299, short patch mismatch repair system
+ GO:0006300, long patch mismatch repair system

Terms movements under GO Slim term 'developmental processes ; GO:0007275'
- GO:0007050, cell cycle arrest

Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151'
- GO:0007050, cell cycle arrest

Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0006555, methionine metabolism
- GO:0006566, threonine metabolism
- GO:0006567, threonine catabolism
- GO:0006570, tyrosine metabolism
- GO:0006572, tyrosine catabolism
- GO:0009086, methionine biosynthesis
- GO:0009087, methionine catabolism
- GO:0009088, threonine biosynthesis
- GO:0009693, ethylene biosynthesis
- GO:0018927, methionine and threonine metabolism
- GO:0019279, methionine biosynthesis, from L-homoserine via cystathione
- GO:0019280, methionine biosynthesis, from homoserine via O-acetyl-L-homoserine and cystathione
- GO:0019281, methionine biosynthesis, from homoserine via O-succinyl-L-homoserine and cystathione
- GO:0019282, methionine biosynthesis, direct, from O-acetyl-L-homoserine
- GO:0019283, methionine biosynthesis, from O-phospho-L-homoserine and cystathione
- GO:0019284, methionine biosynthesis, from S-adenosylmethionine
- GO:0019445, tyrosine catabolism to fumarate
- GO:0019446, tyrosine catabolism to phosphoenolpyruvate
- GO:0019457, methionine catabolism to succinyl-CoA
- GO:0019458, methionine catabolism via 2-oxobutanoate
- GO:0019509, methionine recycling
- GO:0019517, threonine catabolism to D-lactate
- GO:0019518, threonine catabolism to pyruvate

Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0018956, phenanthrene catabolism via trans-9(R),10(R)-dihydrodiolphenanthrene
+ GO:0018957, phenanthrene catabolism via trans-9(S),10(S)-dihydrodiolphenanthrene
- GO:0019339, parathion catabolism
- GO:0019489, methylgallate metabolism
- GO:0019505, resorcinol metabolism

Terms movements under GO Slim term 'biosynthesis ; GO:0009058'
+ GO:0015948, methanogenesis
+ GO:0019385, methanogenesis, from acetate
+ GO:0019386, methanogenesis, from carbon dioxide
+ GO:0019387, methanogenesis, from methanol
- GO:0019630, quinate metabolism
- GO:0019631, quinate catabolism

Terms movements under GO Slim term 'response to external stimulus ; GO:0009605'
+ GO:0006805, xenobiotic metabolism
- GO:0007050, cell cycle arrest
+ GO:0009402, toxin resistance
+ GO:0009403, toxin biosynthesis
+ GO:0009404, toxin metabolism
+ GO:0009407, toxin catabolism
+ GO:0009412, heavy metal response
+ GO:0009634, heavy metal sensitivity/resistance
+ GO:0009635, herbicide response
+ GO:0009636, detoxification response
+ GO:0016351, drug susceptibility/resistance
+ GO:0016352, insecticide susceptibility/resistance
+ GO:0016353, carbamate susceptibility/resistance
+ GO:0016354, cyclodiene susceptibility/resistance
+ GO:0016355, DDT susceptibility/resistance
+ GO:0016356, organophosphosphorous susceptibility/resistance
+ GO:0016357, pyrethroid susceptibility/resistance
+ GO:0017085, insecticide response
+ GO:0017139, arsenate sensitivity/resistance
+ GO:0017142, toxin susceptibility/resistance
+ GO:0017143, insecticide metabolism
+ GO:0017144, drug metabolism
+ GO:0018864, acetylene metabolism
+ GO:0018865, acrylonitrile metabolism
+ GO:0018866, adamantanone metabolism
+ GO:0018868, 2-aminobenzenesulfonate metabolism
+ GO:0018869, 2-aminobenzoate metabolism
+ GO:0018870, anaerobic 2-aminobenzoate metabolism
+ GO:0018871, 1-aminocyclopropane-1-carboxylate metabolism
+ GO:0018872, arsonoacetate metabolism
+ GO:0018873, atrazine metabolism
+ GO:0018874, benzoate metabolism
+ GO:0018875, anaerobic benzoate metabolism
+ GO:0018876, benzonitrile metabolism
+ GO:0018877, beta-1,2,3,4,5,6-hexachlorocyclohexane metabolism
+ GO:0018878, aerobic beta-1,2,3,4,5,6-hexachlorocyclohexane metabolism
+ GO:0018879, biphenyl metabolism
+ GO:0018880, 4-chlorobiphenyl metabolism
+ GO:0018881, bromoxynil metabolism
+ GO:0018883, caprolactam metabolism
+ GO:0018884, carbazole metabolism
+ GO:0018885, carbon tetrachloride metabolism
+ GO:0018886, anaerobic carbon tetrachloride metabolism
+ GO:0018887, 4-carboxy-4'-sulfoazobenzene metabolism
+ GO:0018888, 3-chloroacrylic acid metabolism
+ GO:0018889, 2-chloro-N-isopropylacetanilide metabolism
+ GO:0018890, cyanamide metabolism
+ GO:0018891, cyclohexanol metabolism
+ GO:0018892, cyclohexylsulfamate metabolism
+ GO:0018893, dibenzofuran metabolism
+ GO:0018894, dibenzo-p-dioxin metabolism
+ GO:0018895, dibenzothiophene metabolism
+ GO:0018896, dibenzothiophene catabolism
+ GO:0018897, dibenzothiophene desulfurization
+ GO:0018898, 2,4-dichlorobenzoate metabolism
+ GO:0018899, 1,2-dichloroethane metabolism
+ GO:0018900, dichloromethane metabolism
+ GO:0018901, 2,4-dichlorophenoxyacetic acid metabolism
+ GO:0018902, 1,3-dichloro-2-propanol metabolism
+ GO:0018903, 1,3-dichloropropene metabolism
+ GO:0018904, organic ether metabolism
+ GO:0018905, dimethyl ether metabolism
+ GO:0018906, methyl tert-butyl ether metabolism
+ GO:0018909, dodecyl sulfate metabolism
+ GO:0018910, benzene metabolism
+ GO:0018911, 1,2,4-trichlorobenzene metabolism
+ GO:0018912, 1,4-dichlorobenzene metabolism
+ GO:0018913, anaerobic ethylbenzene metabolism
+ GO:0018914, chlorobenzene metabolism
+ GO:0018915, ethylbenzene metabolism
+ GO:0018916, nitrobenzene metabolism
+ GO:0018917, fluorene metabolism
+ GO:0018919, gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolism
+ GO:0018920, glyphosate metabolism
+ GO:0018921, 3-hydroxybenzyl alcohol metabolism
+ GO:0018922, iprodione metabolism
+ GO:0018925, m-cresol metabolism
+ GO:0018926, methanesulfonic acid metabolism
+ GO:0018928, methyl ethyl ketone metabolism
+ GO:0018929, methyl fluoride metabolism
+ GO:0018930, 3-methylquinoline metabolism
+ GO:0018931, naphthalene metabolism
+ GO:0018934, nitrilotriacetate metabolism
+ GO:0018935, aerobic nitrilotriacetate metabolism
+ GO:0018936, anaerobic nitrilotriacetate metabolism
+ GO:0018937, nitroglycerin metabolism
+ GO:0018938, 2-nitropropane metabolism
+ GO:0018939, n-octane metabolism
+ GO:0018945, organosilicone metabolism
+ GO:0018946, aerobic organosilicone metabolism
+ GO:0018947, anaerobic organosilicone metabolism
+ GO:0018948, xylene metabolism
+ GO:0018949, m-xylene metabolism
+ GO:0018950, o-xylene metabolism
+ GO:0018951, p-xylene metabolism
+ GO:0018952, parathion metabolism
+ GO:0018953, p-cymene metabolism
+ GO:0018954, pentaerythritol tetranitrate metabolism
+ GO:0018955, phenanthrene metabolism
+ GO:0018956, phenanthrene catabolism via trans-9(R),10(R)-dihydrodiolphenanthrene
+ GO:0018957, phenanthrene catabolism via trans-9(S),10(S)-dihydrodiolphenanthrene
+ GO:0018960, 4-nitrophenol metabolism
+ GO:0018961, pentachlorophenol metabolism
+ GO:0018962, 3-phenylpropionate metabolism
+ GO:0018963, phthalate metabolism
+ GO:0018964, propylene metabolism
+ GO:0018965, s-triazine compound metabolism
+ GO:0018966, styrene metabolism
+ GO:0018967, tetrachloroethene metabolism
+ GO:0018968, tetrahydrofuran metabolism
+ GO:0018969, thiocyanate metabolism
+ GO:0018970, toluene metabolism
+ GO:0018971, anaerobic toluene metabolism
+ GO:0018972, toluene-4-sulfonate metabolism
+ GO:0018973, trinitrotoluene metabolism
+ GO:0018974, 2,4,6-trinitrotoluene metabolism
+ GO:0018975, anaerobic 2,4,6-trinitrotoluene metabolism
+ GO:0018976, 1,2,3-tribromopropane metabolism
+ GO:0018977, 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
+ GO:0018979, trichloroethylene metabolism
+ GO:0018980, 2,4,5-trichlorophenoxyacetic acid metabolism
+ GO:0018981, triethanolamine metabolism
+ GO:0018983, Z-phenylacetaldoxime metabolism
+ GO:0018984, naphthalenesulfonate metabolism
+ GO:0019256, acrylonitrile catabolism
+ GO:0019257, 4-nitrotoluene metabolism
+ GO:0019258, 4-nitrotoluene catabolism
+ GO:0019259, 2-aminobenzoate catabolism
+ GO:0019260, 1,2-dichloroethane catabolism
+ GO:0019261, 1,4-dichlorobenzene catabolism
+ GO:0019263, adamantanone catabolism
+ GO:0019326, nitrotoluene metabolism
+ GO:0019334, p-cymene catabolism
+ GO:0019335, 3-methylquinoline catabolism
+ GO:0019337, tetrachloroethene catabolism
+ GO:0019338, pentachlorophenol catabolism
+ GO:0019339, parathion catabolism
+ GO:0019340, dibenzofuran catabolism
+ GO:0019341, dibenzo-p-dioxin catabolism
+ GO:0019380, 3-phenylpropionate catabolism
+ GO:0019381, atrazine catabolism
+ GO:0019382, carbon tetrachloride catabolism
+ GO:0019384, caprolactam catabolism
+ GO:0019399, cyclohexanol oxidation
+ GO:0019429, fluorene catabolism
+ GO:0019487, anaerobic acetylene catabolism
+ GO:0019490, 2-aminobenzenesulfonate desulfonation
+ GO:0019497, hexachlorocyclohexane metabolism
+ GO:0019498, n-octane oxidation
+ GO:0019501, arsonoacetate catabolism
+ GO:0019505, resorcinol metabolism
+ GO:0019506, phenylmercury acetate catabolism
+ GO:0019600, toluene oxidation
+ GO:0019601, toluene oxidation, via 2-hydroxytoluene
+ GO:0019602, toluene oxidation, via 3-hydroxytoluene
+ GO:0019603, toluene oxidation, via 4-hydroxytoluene
+ GO:0019604, toluene oxidation to catechol
+ GO:0019609, 3-hydroxyphenylacetate metabolism
+ GO:0019610, 3-hydroxyphenylacetate catabolism
+ GO:0019611, 4-toluenecarboxylate metabolism
+ GO:0019612, 4-toluenecarboxylate catabolism
+ GO:0019620, aerobic benzoate metabolism
+ GO:0019622, 3-(3-hydroxy)phenylpropionate catabolism
+ GO:0019623, atrazine catabolism to urea
+ GO:0019624, atrazine catabolism to isopropylamine
+ GO:0019625, atrazine catabolism to cyanuric acid
+ GO:0019634, phosphonate metabolism
+ GO:0019635, 2-aminoethylphosphonate catabolism
+ GO:0019636, phosphonoacetate metabolism
+ GO:0019637, organophosphate metabolism
+ GO:0019638, 6-hydroxycineole metabolism
+ GO:0019639, 6-hydroxycineole catabolism
+ GO:0019696, toluene oxidation, via toluene-cis-1,2-dihydrodiol
+ GO:0019700, phosphonate catabolism
+ GO:0019830, cadmium sensitivity/resistance
+ GO:0019831, chromate sensitivity/resistance
+ GO:0019832, mercuric sensitivity/resistance
+ GO:0019837, herbicide susceptibility/resistance
+ GO:0019873, tellurium sensitivity/resistance
+ GO:0019876, nylon degradation
+ GO:0019881, streptomycin susceptibility/resistance
+ GO:0030152, bacteriocin biosynthesis
+ GO:0030153, bacteriocin immunity
+ GO:0042142, heavy metal chelation

Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628'
- GO:0006555, methionine metabolism
- GO:0006556, S-adenosylmethionine biosynthesis
- GO:0006566, threonine metabolism
- GO:0006567, threonine catabolism
- GO:0006570, tyrosine metabolism
- GO:0006571, tyrosine biosynthesis
- GO:0006572, tyrosine catabolism
- GO:0006730, one-carbon compound metabolism
- GO:0007050, cell cycle arrest
- GO:0009086, methionine biosynthesis
- GO:0009087, methionine catabolism
- GO:0009088, threonine biosynthesis
- GO:0009256, 10-formyltetrahydrofolate metabolism
- GO:0009257, 10-formyltetrahydrofolate biosynthesis
- GO:0009258, 10-formyltetrahydrofolate catabolism
- GO:0009693, ethylene biosynthesis
- GO:0009853, photorespiration
- GO:0009854, oxidative photosynthetic carbon pathway
- GO:0015942, formate metabolism
- GO:0015943, formate biosynthesis
- GO:0015944, formate oxidation
- GO:0015945, methanol metabolism
- GO:0015946, methanol oxidation
- GO:0015947, methane metabolism
- GO:0015948, methanogenesis
- GO:0018867, alpha-pinene metabolism
- GO:0018882, (+)-camphor metabolism
- GO:0018907, dimethyl sulfoxide metabolism
- GO:0018908, organosulfide cycle
- GO:0018918, gallate metabolism
- GO:0018923, limonene metabolism
- GO:0018924, mandelate metabolism
- GO:0018927, methionine and threonine metabolism
- GO:0018933, nicotine metabolism
- GO:0018940, orcinol metabolism
- GO:0018941, organomercury metabolism
- GO:0018942, organometal metabolism
- GO:0018943, organotin metabolism
- GO:0018944, tri-n-butyltin metabolism
- GO:0018958, phenol metabolism
- GO:0018959, aerobic phenol metabolism
- GO:0018982, vanillin metabolism
- GO:0019279, methionine biosynthesis, from L-homoserine via cystathione
- GO:0019280, methionine biosynthesis, from homoserine via O-acetyl-L-homoserine and cystathione
- GO:0019281, methionine biosynthesis, from homoserine via O-succinyl-L-homoserine and cystathione
- GO:0019282, methionine biosynthesis, direct, from O-acetyl-L-homoserine
- GO:0019283, methionine biosynthesis, from O-phospho-L-homoserine and cystathione
- GO:0019284, methionine biosynthesis, from S-adenosylmethionine
- GO:0019291, tyrosine biosynthesis, from chorismate via phenylalanine
- GO:0019292, tyrosine biosynthesis, from chorismate via 4-hydroxyphenylpyruvate
- GO:0019293, tyrosine biosynthesis, by oxidation of phenylalanine
- GO:0019328, anaerobic gallate catabolism
- GO:0019336, phenol catabolism
- GO:0019383, (+)-camphor catabolism
- GO:0019385, methanogenesis, from acetate
- GO:0019386, methanogenesis, from carbon dioxide
- GO:0019387, methanogenesis, from methanol
- GO:0019396, gallate catabolism
- GO:0019397, gallate catabolism, via 2-pyrone-4,6-dicarboxylate
- GO:0019398, gallate catabolism, via 4-carboxy-2-hydroxhexa-2,3-dienedioate
- GO:0019445, tyrosine catabolism to fumarate
- GO:0019446, tyrosine catabolism to phosphoenolpyruvate
- GO:0019457, methionine catabolism to succinyl-CoA
- GO:0019458, methionine catabolism via 2-oxobutanoate
- GO:0019489, methylgallate metabolism
- GO:0019496, serine-isocitrate lyase pathway
- GO:0019509, methionine recycling
- GO:0019517, threonine catabolism to D-lactate
- GO:0019518, threonine catabolism to pyruvate
- GO:0019608, nicotine catabolism
- GO:0019627, urea metabolism
- GO:0019628, urate catabolism
- GO:0019630, quinate metabolism
- GO:0019631, quinate catabolism
- GO:0019655, ethanol fermentation
- GO:0019753, one-carbon compound biosynthesis
- GO:0019754, one-carbon compound catabolism

Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
+ GO:0000183, chromatin silencing at ribosomal DNA (rDNA)
+ GO:0006324, S-phase regulated histone modification
+ GO:0006325, establishment and/or maintenance of chromatin architecture
+ GO:0006333, chromatin assembly/disassembly
+ GO:0006334, nucleosome assembly
+ GO:0006335, DNA replication dependent nucleosome assembly
+ GO:0006336, DNA replication independent nucleosome assembly
+ GO:0006337, nucleosome disassembly
+ GO:0006338, chromatin modeling
+ GO:0006339, positive regulation of homeotic gene (trithorax group)
+ GO:0006340, negative regulation of homeotic gene (Polycomb group)
+ GO:0006341, chromatin insulator sequence binding
+ GO:0006342, chromatin silencing
+ GO:0006343, establishment of chromatin silencing
+ GO:0006344, maintenance of chromatin silencing
+ GO:0006345, loss of chromatin silencing
+ GO:0006346, methylation-dependent chromatin silencing
+ GO:0006347, chromatin silencing at HML and HMR (sensu Saccharomyces)
+ GO:0006348, chromatin silencing at telomere
+ GO:0016568, chromatin modification
+ GO:0016569, covalent chromatin modification
+ GO:0016570, histone modification
+ GO:0016571, histone methylation
+ GO:0016572, histone phosphorylation
+ GO:0016573, histone acetylation
+ GO:0016574, histone ubiquitylation
+ GO:0016575, histone deacetylation
+ GO:0016576, histone dephosphorylation
+ GO:0016577, histone demethylation
+ GO:0016578, histone deubiquitylation
+ GO:0016582, non-covalent chromatin modification
+ GO:0016584, nucleosome spacing
+ GO:0030466, chromatin silencing at silent mating type cassettes (sensu Fungi)

Terms movements under GO Slim term 'secondary metabolism ; GO:0019748'
+ GO:0018933, nicotine metabolism
+ GO:0019608, nicotine catabolism

Terms movements under GO Slim term 'host-pathogen interaction ; GO:0030383'
+ GO:0020035, cytoadherence to microvasculature



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
516168	Works For Me	Incyte#29	[none]
523448	Fixed	redundant terms?	[none]
526459	None	IL-12 p40,p35 and receptors	GO:0042163-42164
526986	None	neutrophil chemoattractant	GO:0030593
529190	Fixed	homeless term? - GO:0008968	GO:0008958
531521	Works For Me	incipient bud site	[none]
531530	Rejected	regulator of gene exp.	[none]
531533	None	polyadenylate binding parent	[none]
532026	Fixed	phospholipase B	[none]
533087	None	endosome transport	GO:0045022
533252	Works For Me	vacuolar inheritance	[none]
533253	None	plasma membrane fusion	GO:0045026
535198	None	peroxisome inheritance	GO:0045033




Statistics:
Component: 987 terms, 48.7% defined (481 terms defined)
Function: 5021 terms, 13.2% defined (663 terms defined)
Process: 4803 terms, 30.4% defined (1459 terms defined)
Total: 10811 terms, 24.1% defined (2603 terms defined)


Term errors
GO:0006919, caspase activation
- definition removed

GO:0006921, disassembly of cell structures
- definition removed

GO:0006922, cleavage of lamin
- definition removed

GO:0006923, cleavage of cytoskeletal proteins
- definition removed

GO:0008624, induction of apoptosis by extracellular signals
- definition removed

GO:0008629, induction of apoptosis by intracellular signals
- definition removed

GO:0008633, induction of proapoptotic gene products
- definition removed

GO:0008634, repression of survival gene products
- definition removed

GO:0008637, apoptotic mitochondrial changes
- definition removed

GO:0012503, induction of non-apoptotic programmed cell death
- definition removed

GO:0016583, nucleosome modeling
- term lost

GO:0018978, anaerobic 1,1,1-trichloro-2,2-bis-(4'-chlorophenyl)ethane metabolism
- term lost

GO:0030262, apoptotic nuclear changes
- definition removed

GO:0030264, nuclear fragmentation
- definition removed

GO:0030559, rRNA pseudouridylation guide
- definition removed

GO:0030560, tRNA pseudouridylation guide
- definition removed

GO:0030562, rRNA 2'-O-ribose methylation guide
- definition removed

GO:0030564, tRNA 2'-O-ribose methylation guide
- definition removed

GO:0042003, masculinization of hermaphrodite soma (sensu Nematoda)
- definition removed

GO:0042004, feminization of hermaphrodite soma (sensu Nematoda)
- definition removed