GO Monthly Release Notes for April 2001 ======================== Generated on Mon Oct 27 12:26:22 2003 Files used: component old: 2.2 new: 2.13 function old: 2.6 new: 2.31 process old: 2.4 new: 2.21 definitions old: 2.4 new: 2.16 GO Slim: Generic.0208 Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (10 new terms) GO:0016327 GO:0005886 FB D apicolateral plasma membrane GO:0016328 GO:0005886 FB D lateral plasma membrane GO:0016341 GO:0005578 FB D other collagen GO:0016342 GO:0005886 FB D catenin GO:0017023 GO:0005941 FB D myosin phosphatase GO:0017052 GO:0005941 FB D insulin-like growth factor binding protein GO:0017053 GO:0005654 FB D transcriptional repressor complex GO:0017054 GO:0005654 FB D negative co-factor 2 complex GO:0017059 GO:0005575 FB D serine C-palmitoyltransferase GO:0005783 GO:0017071 GO:0005575 FB D intracellular cyclic nucleotide activated cation channel Term movements in component ontology: Terms movements under GO Slim term 'cellular_component ; GO:0005575' + GO:0005587, collagen type IV + GO:0009362, succinate dehydrogenase-(ubiquinone) Terms movements under GO Slim term 'mitochondrion ; GO:0005739' + GO:0009362, succinate dehydrogenase-(ubiquinone) Terms movements under GO Slim term 'unlocalized ; GO:0005941' - GO:0009362, succinate dehydrogenase-(ubiquinone) New terms in function ontology (76 new terms) GO:0000286 GO:0003824 SGD D alanine dehydrogenase GO:0000287 GO:0005488 SGD D magnesium binding GO:0016326 GO:0003774 FB D kinesin motor GO:0005515 GO:0016329 GO:0016329 FB D apoptosis regulator GO:0016343 GO:0008092 FB D cytoskeletal anchor protein GO:0016977 GO:0003824 FB D chitosanase GO:0016978 GO:0003824 FB D lipoate-protein ligase B GO:0016979 GO:0003824 FB D lipoate-protein ligase GO:0016980 GO:0003824 FB D creatinase GO:0016983 GO:0003824 FB D cytokine beta-glucosidase GO:0016984 GO:0003824 FB D ribulose-bisphosphate carboxylase GO:0016985 GO:0003824 FB D mannan endo-1,4-beta-mannosidase GO:0016986 GO:0003700 FB D transcription initiation factor GO:0016987 GO:0003700 FB D sigma factor GO:0016988 GO:0003700 FB D transcription initiation factor antagonist GO:0016989 GO:0003700 FB D sigma factor antagonist GO:0016990 GO:0003824 FB D arginine deiminase GO:0016991 GO:0003824 FB D gentamicin 3'-N-acetyltransferase GO:0016992 GO:0003824 FB D lipoate synthase GO:0016993 GO:0003824 FB D precorrin-8X methylmutase GO:0016994 GO:0003824 FB D precorrin-6X reductase GO:0016995 GO:0003824 FB D cholesterol oxidase GO:0016996 GO:0003824 FB D endo-alpha-sialidase GO:0016997 GO:0003824 FB D alpha-sialidase GO:0017002 GO:0004672 FB D activin receptor GO:0004872 GO:0017005 GO:0003824 FB D tyrosyl-DNA phosophodiesterase GO:0017016 GO:0004871 FB D RAS interactor GO:0017017 GO:0004721 FB D MAP kinase phosphatase GO:0017018 GO:0004721 FB D myosin phosphatase GO:0017019 GO:0003824 FB D myosin phosphatase catalyst GO:0004721 GO:0017020 GO:0003824 FB D myosin phosphatase regulator GO:0004721 GO:0017021 GO:0003824 FB D myosin phosphatase myosin binding GO:0004721 GO:0005515 GO:0017022 GO:0005515 FB D myosin binding GO:0017024 GO:0005515 FB D myosin I binding GO:0017025 GO:0005515 FB D TATA-binding protein binding GO:0017026 GO:0008233 FB D procollagen C-endopeptidase GO:0017027 GO:0004871 FB D transmembrane receptor protein serine/threonine kinase receptor-associated protein GO:0017028 GO:0017028 FB D protein stabilization GO:0017029 GO:0017028 FB D lysosomal protein stabilization GO:0017030 GO:0017028 FB D beta-galactosidase stabilization GO:0017031 GO:0004871 FB D RHO interactor GO:0017032 GO:0005215 FB D potassium:amino acid transporter GO:0017033 GO:0005515 FB D DNA topoisomerase I binding GO:0017034 GO:0004871 FB D RAP guanyl-nucleotide exchange factor GO:0017039 GO:0008233 FB D dipeptidyl-peptidase III GO:0017040 GO:0003824 FB D ceramidase GO:0017041 GO:0003824 FB D galactosylgalactosylglucosylceramidase GO:0017042 GO:0003824 FB D glycosylceramidase GO:0017043 GO:0005102 FB D adrenocorticotropin GO:0017044 GO:0005102 FB D alpha-melanocyte stimulating hormone GO:0017045 GO:0005102 FB D adrenocorticotropin-releasing hormone GO:0017046 GO:0005515 FB D polypeptide hormone binding GO:0017047 GO:0005515 FB D adrenocorticotropin-releasing hormone binding GO:0017048 GO:0005515 FB D RHO binding GO:0017049 GO:0005515 FB D GTP-RHO binding GO:0017050 GO:0003824 FB D D-erythro-sphingosine kinase GO:0017051 GO:0003824 FB D retinol dehydratase GO:0017056 GO:0005198 FB D structural protein of nuclear pore GO:0017057 GO:0003824 FB D 6-phosphogluconolactonase GO:0017058 GO:0005515 FB D FH1-domain binding GO:0017060 GO:0003824 FB D galactoside 3(4)-L-fucosyltransferase GO:0017061 GO:0003824 FB D 5'-methylthioadenosine phosphorylase GO:0017063 GO:0003824 FB D phosphatidylserine-specific phospholipase A1 GO:0017064 GO:0003824 FB D fatty acid amide hydrolase GO:0017065 GO:0003685 FB D single-strand selective monofunctional uracil-DNA glycosylase GO:0003824 GO:0017066 GO:0003824 FB D cholesterol O-acyltransferase GO:0017067 GO:0003824 FB D tyrosine-ester sulfotransferase GO:0017068 GO:0003824 FB D glutamyl-tRNA(Gln) amidotransferase GO:0017069 GO:0003723 FB D snRNA binding GO:0017070 GO:0003723 FB D U6 snRNA binding GO:0017072 GO:0003754 FB D tubulin folding GO:0017074 GO:0008233 FB D procollagen N-endopeptidase GO:0017075 GO:0005515 FB D syntaxin-1 binding GO:0017076 GO:0000166 FB D purine nucleotide binding GO:0017077 GO:0008135 FB D oxidative phosphorylation uncoupler GO:0017078 GO:0003754 FB D HSC70-interacting Term name changes in function ontology GO:0004161: dimethylallyltranstransferase --> dimethylallyltransferase GO:0005039: death receptor associated factor --> death receptor-associated factor GO:0005200: cytoskeletal structural protein --> structural protein of cytoskeleton GO:0005240: glycine receptor associated protein --> glycine receptor-associated protein GO:0016722: oxidoreductase, oxidising metal ions --> oxidoreductase, oxidizing metal ions GO:0016723: oxidoreductase, oxidising metal ions, NAD or NADP as acceptor --> oxidoreductase, oxidizing metal ions, NAD or NADP as acceptor GO:0016724: oxidoreductase, oxidising metal ions, oxygen as acceptor --> oxidoreductase, oxidizing metal ions, oxygen as acceptor GO:0016962: receptor associated protein --> receptor-associated protein GO:0016963: alpha-2 macroglobulin receptor associated protein --> alpha-2 macroglobulin receptor-associated protein New definitions for function ontology terms (5 new definitions) GO:0004199, caspase GO:0004201, caspase-1 GO:0004208, caspase-3 GO:0008189, apoptosis inhibitor GO:0016506, apoptosis activator New term merges in function ontology GO:0004480 has been merged into GO:0008168, methyltransferase Term movements in function ontology: Terms movements under GO Slim term 'motor ; GO:0003774' + GO:0008569, minus-end-directed kinesin ATPase + GO:0008574, plus-end-directed kinesin ATPase Terms movements under GO Slim term 'enzyme ; GO:0003824' + GO:0016537, cyclin-dependent protein kinase catalyst + GO:0016538, cyclin-dependent protein kinase regulator Terms movements under GO Slim term 'signal transducer ; GO:0004871' + GO:0005039, death receptor-associated factor Terms movements under GO Slim term 'structural protein ; GO:0005198' - GO:0003712, transcription co-factor - GO:0003713, transcription co-activator - GO:0003714, transcription co-repressor - GO:0003719, transcription factor, cytoplasmic sequestering - GO:0008134, transcription factor binding - GO:0008140, cAMP response element binding protein binding Terms movements under GO Slim term 'protein binding ; GO:0005515' + GO:0003712, transcription co-factor + GO:0003713, transcription co-activator + GO:0003714, transcription co-repressor + GO:0003719, transcription factor, cytoplasmic sequestering + GO:0008134, transcription factor binding + GO:0008569, minus-end-directed kinesin ATPase + GO:0008574, plus-end-directed kinesin ATPase Terms movements under GO Slim term 'antioxidant ; GO:0016209' - GO:0008189, apoptosis inhibitor - GO:0016505, apoptotic protease activator - GO:0016506, apoptosis activator Terms movements under GO Slim term 'apoptosis regulator ; GO:0016329' + GO:0008189, apoptosis inhibitor + GO:0016505, apoptotic protease activator + GO:0016506, apoptosis activator New terms in process ontology (53 new terms) GO:0002009 GO:0007275 MGI D morphogenesis of an epithelium GO:0002011 GO:0007275 MGI D morphogenesis of an epithelial sheet GO:0009680 GO:0009607 TAIR D response to non-pathogenic bacteria GO:0009681 GO:0006950 TAIR D perception of non-pathogenic bacteria GO:0008150 GO:0009605 GO:0009607 GO:0009682 GO:0009607 TAIR D induced systemic resistance GO:0009683 GO:0006519 TAIR D indole acetic acid metabolism GO:0009684 GO:0006519 TAIR D indole acetic acid biosynthesis GO:0009058 GO:0009685 GO:0006629 TAIR D gibberellic acid metabolism GO:0009686 GO:0006629 TAIR D gibberellic acid biosynthesis GO:0009058 GO:0009687 GO:0006629 TAIR D abscisic acid metabolism GO:0009688 GO:0006629 TAIR D abscisic acid biosynthesis GO:0009058 GO:0009690 GO:0008152 TAIR D cytokinin metabolism GO:0009056 GO:0009691 GO:0008152 TAIR D cytokinin biosynthesis GO:0009056 GO:0009058 GO:0009692 GO:0006519 TAIR D ethylene metabolism GO:0009693 GO:0006519 TAIR D ethylene biosynthesis GO:0009058 GO:0009694 GO:0006629 TAIR D jasmonic acid metabolism GO:0009695 GO:0006629 TAIR D jasmonic acid biosynthesis GO:0009058 GO:0009696 GO:0008152 TAIR D salicylic acid metabolism GO:0009697 GO:0009058 TAIR D salicylic acid biosynthesis GO:0016322 GO:0007275 FB D neuronal remodeling GO:0016325 GO:0007010 FB D organization of the oocyte microtubule cytoskeleton GO:0007275 GO:0016330 GO:0007049 FB D second mitotic wave GO:0007275 GO:0016331 GO:0007275 FB D morphogenesis of embryonic epithelium GO:0016332 GO:0007275 FB D polarity of embryonic epithelium GO:0016333 GO:0007275 FB D morphogenesis of follicular epithelium GO:0016334 GO:0007275 FB D polarity of follicular epithelium GO:0016335 GO:0007275 FB D morphogenesis of larval imaginal disc epithelium GO:0016336 GO:0007275 FB D polarity of larval imaginal disc epithelium GO:0016337 GO:0007154 FB D cell-cell adhesion GO:0016338 GO:0007154 FB D calcium-independent cell-cell adhesion GO:0016339 GO:0007154 FB D calcium-dependent cell-cell adhesion GO:0016340 GO:0007154 FB D calcium-dependent cell-matrix adhesion GO:0016344 GO:0007049 FB D meiotic chromosome movement GO:0016345 GO:0007049 FB D female meiotic chromosome movement GO:0016346 GO:0007049 FB D male meiotic chromosome movement GO:0016998 GO:0016043 FB D cell wall degradation GO:0016999 GO:0008152 FB D antibiotic metabolism GO:0017000 GO:0008152 FB D antibiotic biosynthesis GO:0009058 GO:0017001 GO:0008152 FB D antibiotic catabolism GO:0009056 GO:0017003 GO:0006464 FB D protein-heme linkage GO:0008152 GO:0017004 GO:0008152 FB D cytochrome biogenesis GO:0017006 GO:0006464 FB D protein-tetrapyrrole linkage GO:0017007 GO:0006464 FB D protein-bilin linkage GO:0017008 GO:0006464 FB D protein-phycobiliviolin linkage GO:0017009 GO:0006464 FB D protein-phycocyanobilin linkage GO:0017010 GO:0006464 FB D protein-phycourobilin linkage GO:0017011 GO:0006464 FB D protein-phycoerythrobilin linkage GO:0017012 GO:0006464 FB D protein-phytochromobilin linkage GO:0017013 GO:0006464 FB D protein flavinylation GO:0017014 GO:0006464 FB D protein nitrosylation GO:0017015 GO:0007165 FB D regulation of TGFbeta receptor signaling pathway GO:0008150 GO:0009605 GO:0009628 GO:0017055 GO:0006350 FB D inhibition of transcriptional pre-initiation complex formation GO:0017062 GO:0008152 FB D cytochrome bc(1) complex biogenesis Term name changes in process ontology GO:0007160: cell-cell matrix adhesion --> cell-matrix adhesion GO:0007161: calcium-independent cell-cell matrix adhesion --> calcium-independent cell-matrix adhesion GO:0016255: attachement of GPI anchor to protein --> attachment of GPI anchor to protein New definitions for process ontology terms (21 new definitions) GO:0000050, urea cycle GO:0006309, DNA fragmentation GO:0006915, apoptosis GO:0006916, anti-apoptosis GO:0006917, induction of apoptosis GO:0006919, caspase activation GO:0006921, disassembly of cell structures GO:0006922, cleavage of lamin GO:0006923, cleavage of cytoskeletal proteins GO:0007016, cytoskeletal anchoring GO:0007155, cell adhesion GO:0007156, homophilic cell adhesion GO:0007157, heterophilic cell adhesion GO:0007160, cell-matrix adhesion GO:0007161, calcium-independent cell-matrix adhesion GO:0008624, induction of apoptosis by extracellular signals GO:0008629, induction of apoptosis by intracellular signals GO:0008632, apoptotic program GO:0008633, induction of proapoptotic gene products GO:0008634, repression of survival gene products GO:0008637, apoptotic mitochondrial changes Term movements in process ontology: Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010' + GO:0008103, polarization of the oocyte microtubule cytoskeleton SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any none Statistics: Component: 732 terms, 30.9% defined (226 terms defined) Function: 3943 terms, 8.1% defined (321 terms defined) Process: 2936 terms, 12.5% defined (368 terms defined) Total: 7611 terms, 12.0% defined (915 terms defined) Term errors none