PROJECT	LEAD/PERSONNEL	Groups	10-Jul	10-Aug	10-Sep	10-Oct	10-Nov	10-Dec	11-Jan	11-Feb	11-Mar	11-Apr	11-May	11-Jun	11-Jul	11-Aug	11-Sep	11-Oct	11-Nov	11-Dec

Compositional Term Submission Tool	Chris	[[Ontology Development]]	"#v1 beta, #curator_testing DONE"	"#v1 release, regulation rollout  DONE; #v1_report  DONE"	#integrate_autocomplete (dep: [[Full Text Indexing]]	rollout #additional_templates as required	rollout #additional_templates as required	rollout #additional_templates as required	rollout #additional_templates as required; plan #v2 in java/OWL	OWL #Reasoner_Benchmarks	Complete feasibility study - java/OWLAPI port (dep: [[Transition to OWL]])	Prototype java/OWLAPI version (TBD: assign developer)		Junit test suite	beta java/OWLAPI version {TBD: assign developer}				production java/OWLAPI version {TBD: assign developer}	
OBO-Edit MIREOT support	Amina	[[Ontology Development]]	beta with isa closure support DONE		"release of 2.1, with isa closure support"		evaluate future requirements				Release Manager Beta									
Transition to OWL	Chris	[[Ontology Development]]		#obof1.4_guide DRAFT release DONE	#obof1.4_guide DRAFT collect comments	#obof1.4_syntax spec DRAFT release	obof1.4 feature freeze	"obo abstract syntax to #OWL2_mapping, incl IAO"	obof1.4 formal spec  release	#Java_OBO_Parser spec	Roundtripping for GO	#Java_OBO_Parser impl (TBD: assign developer)	#JUnit_Test_Suite	OBO Parser to #OWLAPI_Bridge	#Integration - add bridge to P4					

Full Text Indexing	Seth	[[Category:AmiGO_Hub]]	Evaulate Solr DONE	Install Solr on labs DONE	GO-Solr Index engine	GO-Solr Index engine optimizations	Integrate into labs: queries	Integrate into labs: autocomplete	Public version using Solr for queries	Public version with autocomplete	Advanced queries via solr (labs)									
AmiGO Col16 Display	"Amelia, Seth"	[[Annotation_Advocacy_and_Coordination]] [[Category:AmiGO_Hub]]		db storage plan	"load c16 into db, labs"	"load c16 into db, public"	"display c16, labs"		"query on c16, labs"	"display c16, public"										
AmiGO Col17 Display	"Amelia, Seth"	[[Annotation_Advocacy_and_Coordination]] [[Category:AmiGO_Hub]]		db storage plan	"load c17 into db, labs"	"load c17 into db, public"	"display c17, labs"		"query on c17, labs"	"display c17, public"										
Relation Filtering in AmiGO	Seth	[[Category:AmiGO_Hub]]	Release #database_reasoner DONE		Relation Filtering in #map2slim		Relation Filtering in #Term_Enrichment			Relation Filtering in main display										
AmiGO and QuickGO Integration	Seth; Tony	[[Category:AmiGO_Hub]]			QuickGO #graph views in AmiGO (labs)		Feasibility study of deeper integration	TBD												
AmiGO Phylotrees	Seth	[[Category:AmiGO_Hub]] [[Reference Geome]]		basic js Phylo viewer in AmiGO labs DONE							phylotree + annot table demo	Grid view integrated with js phylo view								
Reference Genome Data Management and Reporting	"Sven; Mary, Seth"	[[Category:AmiGO_Hub]] [[Reference Geome]]	#load_gp2pthr family info DONE	#basic_reports - v1 in in labs	gp2family in pulic release	#load_nhx	#GOOSE_queries	#advanced_query_interface			load panther families to gold									
IndiGO Annotation Editor	Seth; Tony	[[Annotation_Advocacy_and_Coordination]]	Evaluation of protein2go architecture DONE			Feasibility study		specification of REST API for ontology info	specification of REST API for annotation create/update											
GO Galaxy Environment	Seth; Amelia	[[Category:AmiGO_Hub]]	alpha on labs DONE		map2slim	GAF fetching	enrichment	AmiGO integration (labs)	obo2owl	visualization	move to mercurial		AmiGO integration (public)							
Taxon Constraint Check Engine	"Chris, Amelia"	[[Annotation_Advocacy_and_Coordination]] [[Ontology Development]]	v1 running weekly DONE	#v1 maintenance	#v1 maintenance	#v1 maintenance		feasibility: web editing of taxon constraints	plan v2 in java/OWL  (dep: [[Transition to OWL]])		prototype java/OWL version		production java/OWL version	web interface and editing of constraints						
Function to Process Inference Engine	Chris	[[Annotation_Advocacy_and_Coordination]] [[Ontology Development]]	v1 running weekly DONE	#v1 maintenance	#v1 maintenance	#v1 maintenance			plan v2 in java/OWL (dep: [[Transition to OWL]])		Demo	prototype java/OWL version			production java/OWL version			
Increasing Expressivity in GO Annotations	Amelia	[[Annotation_Advocacy_and_Coordination]] [[Ontology Development]]	GAF2 publishing DONE	feasibility: integrating pathway/GO data	LEGO feasibility						Plan for pathway db integration							
Annotation Rule Engine	Amelia	[[Annotation_Advocacy_and_Coordination]] [[Ontology Development]]	Collect rules on wiki DONE	Specify XML format	Collect rules into XML		alpha version of rule engine	integrate SQL rules into engine	integrate scripting rules into engine	"evaluate OWLAPI, SPARQL, RIF for use in rules engine"	OWL inferences							
Incremental Database Loading	Ben	[[Annotation_Advocacy_and_Coordination]]	#benchmarks		java parsers implemented	java bulkload dumpers	sql loader											
Virtualization	Seth+Ben	[[Category:AmiGO_Hub]]			#feasibility_study			create test VM			Distribute VM							
Advanced AmiGO Displays	Seth	[[Category:AmiGO_Hub]]	N-matrix alpha on labs DONE				Ontology-annotation grid view (labs)	integration with N-matrix amigo environment			goose-gold v0							
Schema Overhaul	Chris					plan					GAF Submission Demo							
AmiGO overhaul	Seth	[[Category:AmiGO_Hub]]																

ONGOING																		
OBO-Edit 2 Development	Amina	[[Ontology Development]]	2.1 betas DONE	2.1 stable beta testing	2.1 public	determine 2.2 requirements	evaluate P4 architecture	implement simultaneous obo/owl save in P4	autodetect of file changes in OE	feasibility study of OE as P4 plugin								
AmiGO Development	Seth	[[Category:AmiGO_Hub]]	#1_8 labs DONE	#1_8 public														
PAINT Development	Suzi	[[Reference Geome]]																
Production	Ben	[[Category:AmiGO_Hub]]	ONGOING	ONGOING	ONGOING	svn support	ONGOING	ONGOING	ONGOING	ONGOING	Test deploy gold	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	
Website Maintenance	Amela	[[:Category:Web_Presence_Working_Group]]	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING	ONGOING