!! file created 2009-06-23 to contain xps not ready to include in live file
!!   protein complexes with peptidase activity will probably eventually have differentiae that refer to PRO terms
!!   text definitions reviewed to ensure they contain enough info to find differentiae

[Term]
id: GO:0000120 ! RNA polymerase I transcription factor complex
intersection_of: GO:0043234 ! protein complex
intersection_of: OBO_REL:has_function GO:0003701 ! RNA polymerase I transcription factor activity
!! will have to see whether transcription overhaul changes this, but fine for now

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0005601 ! classical-complement-pathway C3/C5 convertase complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004252 ! serine-type endopeptidase activity

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0005956 ! protein kinase CK2 complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004674 ! protein serine/threonine kinase activity

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0008303 ! caspase complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004197 ! cysteine-type endopeptidase activity

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0009367 ! prepilin peptidase complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004190 ! aspartic-type endopeptidase activity
!! note 2009-06-23: 
!!   also must check whether there even are any prepilin peptidase complexes - so far I've only found references to monomers!
!!   if we keep the term, the def still needs work

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0009368 ! endopeptidase Clp complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004252 ! serine-type endopeptidase activity

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0009376 ! HslUV protease complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0070011 ! peptidase activity, acting on L-amino acid peptides

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0017087 ! mitochondrial processing peptidase complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004222 ! metalloendopeptidase activity

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0017090 ! meprin A complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004222 ! metalloendopeptidase activity

![Term]
!id: GO:0030133 ! transport vesicle
!intersection_of: GO:0031982 ! vesicle
!intersection_of: OBO_REL:participates_in GO:0045054 ! constitutive secretory pathway
!! 1) not quite sure all transport vesicles are involved in constitutive secretory p'way (the clathrin-sculpted vesicles might participate only in regulated secretion); might be safer to rephrase GO:0030133 def
!! 2) not sure whether retrograde transport should count as constitutive secretory p'way
!! so might be better to use differentia OBO_REL:participates_in GO:0016192 ! vesicle-mediated transport

![Term]
!id: GO:0031021 ! interphase microtubule organizing center
!intersection_of: GO:0005815 ! microtubule organizing center
!intersection_of: OBO_REL:realizes GO:0051325 ! interphase
!! no, GO:0031021 is an MTOC that exists during interphase

!! updated differentia; do we want to include these, where the function does not provide sufficient differentiae?
![Term]
!id: GO:0042720 ! mitochondrial inner membrane peptidase complex
!intersection_of: GO:0043234 ! protein complex
!intersection_of: OBO_REL:has_function GO:0004175 ! endopeptidase activity

![Term]
!id: GO:0005764 ! lysosome
!intersection_of: GO:0000323 ! lytic vacuole
!intersection_of: OBO_REL:has_function GO:0016787 ! hydrolase activity
!! I think GO:0000323 ! lytic vacuole has hydrolase activity;
!!   unfortunately, the distinction between lytic vacuole and lysosome
!!   is not positivity-friendly (a lysosome is lytic AND NOT also a
!!   storage vacuole; cf. fungal-type vacuole), and we keep separate
!!   terms mainly to keep biologists from freaking out  -mah