Ontology Comparison Report ========================== Files used: file 1 (old): gene_ontology_edit.obo.2006-11-01; date: 31:10:2006 17:16; CVS revision: 5.22 file 2 (new): gene_ontology_edit.obo.2006-12-01; date: 30:11:2006 16:32; CVS revision: 5.54 subset: goslim_generic New terms ========= KEY:columns are separated by tabs ID name namespace nearest GO slim parent terms GO:0000418 DNA-directed RNA polymerase IV complex cellular_component GO:0005654, GO:0043234 GO:0000419 DNA-directed RNA polymerase IVb complex cellular_component GO:0005654, GO:0043234 GO:0000420 DNA-directed RNA polymerase IVa complex cellular_component GO:0005654, GO:0043234 GO:0010286 heat acclimation biological_process GO:0006950, GO:0009628 GO:0010287 plastoglobule cellular_component GO:0005575, GO:0009536 GO:0010288 response to lead ion biological_process GO:0008150 GO:0010289 homogalacturonan biosynthesis biological_process GO:0005975, GO:0009058 GO:0010290 chlorophyll catabolite transporter activity molecular_function GO:0005215 GO:0010291 carotene beta-ring hydroxylase activity molecular_function GO:0003824 GO:0010292 GTP:GDP antiporter activity molecular_function GO:0005215 GO:0010293 abscisic aldehyde oxidase activity molecular_function GO:0003824 GO:0010294 abscisic acid glucosyltransferase activity molecular_function GO:0016740 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity molecular_function GO:0003824 GO:0010296 prenylcysteine methylesterase activity molecular_function GO:0016787 GO:0010297 heteroglycan binding molecular_function GO:0030246 GO:0010298 dihydrocamalexic acid decarboxylase activity molecular_function GO:0003824 GO:0010299 detoxification of cobalt ion biological_process GO:0008150 GO:0010300 acyl-ACP synthetase activity molecular_function GO:0003824 GO:0010301 xanthoxin dehydrogenase activity molecular_function GO:0003824 GO:0010302 2-oxoglutarate-dependent dioxygenase activity molecular_function GO:0003824 GO:0010303 limit dextrinase activity molecular_function GO:0016787 GO:0010304 PSII associated light-harvesting complex II catabolism biological_process GO:0009056, GO:0019538 GO:0010305 leaf vascular tissue pattern formation biological_process GO:0007275 GO:0010306 rhamnogalacturonan II biosynthesis biological_process GO:0005975, GO:0009058 GO:0010307 acetylglutamate kinase regulator activity molecular_function GO:0030234 GO:0010308 acireductone dioxygenase (Ni2+-requiring) activity molecular_function GO:0003824 GO:0010309 acireductone dioxygenase (Fe2+-requiring) activity molecular_function GO:0003824 GO:0010310 regulation of hydrogen peroxide metabolism biological_process GO:0008152, GO:0050789 GO:0010311 lateral root formation biological_process GO:0009653 GO:0010312 detoxification of zinc ion biological_process GO:0008150 GO:0032393 MHC class I receptor activity molecular_function GO:0004872 GO:0032394 MHC class Ib receptor activity molecular_function GO:0004872 GO:0032395 MHC class II receptor activity molecular_function GO:0004872 GO:0032396 inhibitory MHC class I receptor activity molecular_function GO:0004872 GO:0032397 activating MHC class I receptor activity molecular_function GO:0004872 GO:0032398 MHC class Ib protein complex cellular_component GO:0005886, GO:0043234 GO:0032399 HECT domain binding molecular_function GO:0005515 GO:0032400 melanosome localization biological_process GO:0016043 GO:0032401 establishment of melanosome localization biological_process GO:0016043 GO:0032402 melanosome transport biological_process GO:0016043 GO:0032403 protein complex binding molecular_function GO:0005515 GO:0032404 mismatch repair complex binding molecular_function GO:0005515 GO:0032405 MutLalpha complex binding molecular_function GO:0005515 GO:0032406 MutLbeta complex binding molecular_function GO:0005515 GO:0032407 MutSalpha complex binding molecular_function GO:0005515 GO:0032408 MutSbeta complex binding molecular_function GO:0005515 GO:0032409 regulation of transporter activity biological_process GO:0050789 GO:0032410 negative regulation of transporter activity biological_process GO:0050789 GO:0032411 positive regulation of transporter activity biological_process GO:0050789 GO:0032412 regulation of ion transporter activity biological_process GO:0050789 GO:0032413 negative regulation of ion transporter activity biological_process GO:0050789 GO:0032414 positive regulation of ion transporter activity biological_process GO:0050789 GO:0032415 regulation of sodium:hydrogen antiporter activity biological_process GO:0050789 GO:0032416 negative regulation of sodium:hydrogen antiporter activity biological_process GO:0050789 GO:0032417 positive regulation of sodium:hydrogen antiporter activity biological_process GO:0050789 GO:0032418 lysosome localization biological_process GO:0007582 GO:0032419 extrinsic to lysosome membrane cellular_component GO:0005575, GO:0005764 GO:0032420 stereocilium cellular_component GO:0005575, GO:0005623 GO:0032421 stereocilium bundle cellular_component GO:0005622, GO:0043226 GO:0032422 purine-rich negative regulatory element binding molecular_function GO:0003677 GO:0032423 regulation of mismatch repair biological_process GO:0006259, GO:0006950, GO:0009719, GO:0050789 GO:0032424 negative regulation of mismatch repair biological_process GO:0006259, GO:0006950, GO:0009719, GO:0050789 GO:0032425 positive regulation of mismatch repair biological_process GO:0006259, GO:0006950, GO:0009719, GO:0050789 GO:0032426 stereocilium bundle tip cellular_component GO:0005575, GO:0005622, GO:0043226 GO:0032427 GBD domain binding molecular_function GO:0005515 GO:0032428 beta-N-acetylgalactosaminidase activity molecular_function GO:0016787 GO:0032429 regulation of phospholipase A2 activity biological_process GO:0050789 GO:0032430 positive regulation of phospholipase A2 activity biological_process GO:0050789 GO:0032431 activation of phospholipase A2 biological_process GO:0050789 GO:0032432 actin filament bundle cellular_component GO:0005575, GO:0005856 GO:0032433 filopodium tip cellular_component GO:0005575, GO:0005623 GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolism biological_process GO:0009056, GO:0019538, GO:0050789 GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolism biological_process GO:0009056, GO:0019538, GO:0050789 GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolism biological_process GO:0009056, GO:0019538, GO:0050789 GO:0032437 cuticular plate cellular_component GO:0005575, GO:0005737, GO:0005856 GO:0032438 melanosome organization and biogenesis biological_process GO:0006996 GO:0032439 endosome localization biological_process GO:0007582 GO:0032440 2-alkenal reductase activity molecular_function GO:0003824 GO:0032441 pheophorbide a oxygenase activity molecular_function GO:0003824 GO:0032442 phenylcoumaran benzylic ether reductase activity molecular_function GO:0003824 GO:0032443 regulation of ergosterol biosynthesis biological_process GO:0006629, GO:0009058, GO:0050789 GO:0032444 activin responsive factor complex cellular_component GO:0043234 GO:0032445 fructose import biological_process GO:0006810, GO:0007582 GO:0032446 protein modification by small protein conjugation biological_process GO:0006464 GO:0032447 protein urmylation biological_process GO:0006464 GO:0032448 DNA hairpin binding molecular_function GO:0003677 GO:0032449 CBM complex cellular_component GO:0043234 GO:0032450 maltase activity molecular_function GO:0016787 GO:0032451 demethylase activity molecular_function GO:0003824 GO:0032452 histone demethylase activity molecular_function GO:0003824 GO:0032453 histone demethylase activity (H3-K4 specific) molecular_function GO:0003824 GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function GO:0003824 GO:0032455 nerve growth factor processing biological_process GO:0006464 GO:0032456 endocytic recycling biological_process GO:0006810, GO:0016043 GO:0032457 fast endocytic recycling biological_process GO:0006810, GO:0016043 GO:0032458 slow endocytic recycling biological_process GO:0006810, GO:0016043 GO:0032459 regulation of protein oligomerization biological_process GO:0019538, GO:0050789 GO:0032460 negative regulation of protein oligomerization biological_process GO:0019538, GO:0050789 GO:0032461 positive regulation of protein oligomerization biological_process GO:0019538, GO:0050789 GO:0032462 regulation of protein homooligomerization biological_process GO:0019538, GO:0050789 GO:0032463 negative regulation of protein homooligomerization biological_process GO:0019538, GO:0050789 GO:0032464 positive regulation of protein homooligomerization biological_process GO:0019538, GO:0050789 GO:0032465 regulation of cytokinesis biological_process GO:0007582, GO:0050789 GO:0032466 negative regulation of cytokinesis biological_process GO:0007582, GO:0050789 GO:0032467 positive regulation of cytokinesis biological_process GO:0007582, GO:0050789 GO:0032468 Golgi calcium ion homeostasis biological_process GO:0019725 GO:0032469 endoplasmic reticulum calcium ion homeostasis biological_process GO:0019725 GO:0032470 elevation of endoplasmic reticulum calcium ion concentration biological_process GO:0019725 GO:0032471 reduction of endoplasmic reticulum calcium ion concentration biological_process GO:0019725 GO:0032472 Golgi calcium ion transport biological_process GO:0006811, GO:0016043 GO:0032473 external side of mitochondrial outer membrane cellular_component GO:0005575, GO:0005739 GO:0032474 otolith morphogenesis biological_process GO:0007275 GO:0032475 otolith formation biological_process GO:0007275 GO:0032476 decaprenyl diphosphate synthase complex cellular_component GO:0043234 GO:0032477 homodimeric decaprenyl diphosphate synthase complex cellular_component GO:0005737, GO:0043234 GO:0032478 heterotetrameric decaprenyl diphosphate synthase complex cellular_component GO:0005739, GO:0043234 GO:0043682 copper-transporting ATPase activity molecular_function GO:0005215, GO:0016787 GO:0055018 regulation of cardiac muscle fiber development biological_process GO:0007275, GO:0050789 GO:0055019 negative regulation of cardiac muscle fiber development biological_process GO:0007275, GO:0050789 GO:0055020 positive regulation of cardiac muscle fiber development biological_process GO:0007275, GO:0050789 GO:0055021 regulation of cardiac muscle growth biological_process GO:0007275, GO:0040007, GO:0050789 GO:0055022 negative regulation of cardiac muscle growth biological_process GO:0007275, GO:0040007, GO:0050789 GO:0055023 positive regulation of cardiac muscle growth biological_process GO:0007275, GO:0040007, GO:0050789 GO:0055024 regulation of cardiac muscle development biological_process GO:0007275, GO:0050789 GO:0055025 positive regulation of cardiac muscle development biological_process GO:0007275, GO:0050789 GO:0055026 negative regulation of cardiac muscle development biological_process GO:0007275, GO:0050789 GO:0060001 minus-end directed actin-filament motor activity molecular_function GO:0003774 GO:0060002 plus-end directed actin-filament motor activity molecular_function GO:0003774 GO:0060003 copper ion export biological_process GO:0006811, GO:0007582 GO:0060004 reflex process biological_process GO:0009605 GO:0060005 vestibular reflex biological_process GO:0009605 GO:0060006 angular vestibuloocular reflex biological_process GO:0009605 GO:0060007 linear vestibuloocular reflex biological_process GO:0009605 GO:0060008 Sertoli cell differentiation biological_process GO:0009653, GO:0030154 GO:0060009 Sertoli cell development biological_process GO:0009653, GO:0030154 GO:0060010 Sertoli cell fate commitment biological_process GO:0009653, GO:0030154 GO:0060011 Sertoli cell proliferation biological_process GO:0008283, GO:0009653 GO:0060012 synaptic transmission, glycinergic biological_process GO:0007267, GO:0007582 Obsoletions =========== GO:0030106, MHC class I receptor activity: the definition is ambiguous and contains incorrect information. To update annotations of gene products that act as receptors for MHC class I protein complexes, use the molecular function term 'MHC class I receptor activity ; GO:0032393'; to update annotations of gene products which are components of MHC class I protein complexes, use the cellular component term 'MHC class I protein complex ; GO:0042612'. GO:0045012, MHC class II receptor activity: it was defined ambiguously, and has therefore been used incorrectly in annotations. To update annotations of gene products that act as receptors for MHC class II protein complexes, use the molecular function term 'MHC class II receptor activity ; GO:0032395'; to update annotations of gene products which are components of MHC class II protein complexes, use the cellular component term 'MHC class II protein complex ; GO:0042613'. Term merges =========== GO:0019009 was merged into GO:0019008, molybdopterin synthase complex Term name changes ================= GO:0004313: [acyl-carrier protein] S-acetyltransferase activity --> [acyl-carrier-protein] S-acetyltransferase activity GO:0004314: [acyl-carrier protein] S-malonyltransferase activity --> [acyl-carrier-protein] S-malonyltransferase activity GO:0004315: 3-oxoacyl-[acyl-carrier protein] synthase activity --> 3-oxoacyl-[acyl-carrier-protein] synthase activity GO:0004316: 3-oxoacyl-[acyl-carrier protein] reductase activity --> 3-oxoacyl-[acyl-carrier-protein] reductase activity GO:0004317: 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase activity --> 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity GO:0004318: enoyl-[acyl-carrier protein] reductase (NADH) activity --> enoyl-[acyl-carrier-protein] reductase (NADH) activity GO:0004319: enoyl-[acyl-carrier protein] reductase (NADPH, B-specific) activity --> enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity GO:0004320: oleoyl-[acyl-carrier protein] hydrolase activity --> oleoyl-[acyl-carrier-protein] hydrolase activity GO:0005606: laminin-1 --> laminin-1 complex GO:0005607: laminin-2 --> laminin-2 complex GO:0005608: laminin-3 --> laminin-3 complex GO:0005609: laminin-4 --> laminin-4 complex GO:0005610: laminin-5 --> laminin-5 complex GO:0005611: laminin-6 --> laminin-6 complex GO:0005612: laminin-7 --> laminin-7 complex GO:0005859: muscle myosin --> muscle myosin complex GO:0005931: nexin --> nexin complex GO:0006898: receptor mediated endocytosis --> receptor-mediated endocytosis GO:0008352: katanin --> katanin complex GO:0008659: (3R)-hydroxymyristoyl-[acyl-carrier protein] dehydratase activity --> (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity GO:0008693: 3-hydroxydecanoyl-[acyl-carrier protein] dehydratase activity --> 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity GO:0008770: [acyl-carrier protein] phosphodiesterase activity --> [acyl-carrier-protein] phosphodiesterase activity GO:0008779: acyl-[acyl-carrier protein]-phospholipid O-acyltransferase activity --> acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity GO:0008780: acyl-[acyl-carrier protein]-UDP-N-acetylglucosamine O-acyltransferase activity --> acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO:0008922: long-chain-fatty-acid-[acyl-carrier protein] ligase activity --> long-chain-fatty-acid-[acyl-carrier-protein] ligase activity GO:0008951: palmitoleoyl [acyl-carrier protein]-dependent acyltransferase activity --> palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity GO:0016295: myristoyl-[acyl-carrier protein] hydrolase activity --> myristoyl-[acyl-carrier-protein] hydrolase activity GO:0016296: palmitoyl-[acyl-carrier protein] hydrolase activity --> palmitoyl-[acyl-carrier-protein] hydrolase activity GO:0016297: acyl-[acyl-carrier protein] hydrolase activity --> acyl-[acyl-carrier-protein] hydrolase activity GO:0016459: myosin --> myosin complex GO:0016460: myosin II --> myosin II complex GO:0016461: unconventional myosin --> unconventional myosin complex GO:0016631: enoyl-[acyl-carrier protein] reductase activity --> enoyl-[acyl-carrier-protein] reductase activity GO:0016708: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of two atoms of oxygen into one donor --> oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen --> oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen GO:0019171: 3-hydroxyacyl-[acyl-carrier protein] dehydratase activity --> 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity GO:0031108: holo-[acyl-carrier protein] biosynthesis --> holo-[acyl-carrier-protein] biosynthesis GO:0031474: myosin IV --> myosin IV complex GO:0031475: myosin V --> myosin V complex GO:0031476: myosin VI --> myosin VI complex GO:0031477: myosin VII --> myosin VII complex GO:0031478: myosin VIII --> myosin VIII complex GO:0031479: myosin IX --> myosin IX complex GO:0031480: myosin X --> myosin X complex GO:0031481: myosin XI --> myosin XI complex GO:0031482: myosin XII --> myosin XII complex GO:0031483: myosin XIII --> myosin XIII complex GO:0031484: myosin XIV --> myosin XIV complex GO:0031485: myosin XV --> myosin XV complex GO:0031486: myosin XVI --> myosin XVI complex GO:0031487: myosin XVII --> myosin XVII complex GO:0031488: myosin XVIII --> myosin XVIII complex GO:0042385: myosin III --> myosin III complex GO:0042642: actomyosin, myosin part --> actomyosin, myosin complex part GO:0042967: acyl-carrier protein biosynthesis --> acyl-carrier-protein biosynthesis GO:0043257: laminin-8 --> laminin-8 complex GO:0043258: laminin-9 --> laminin-9 complex GO:0043259: laminin-10 --> laminin-10 complex GO:0043260: laminin-11 --> laminin-11 complex GO:0043261: laminin-12 --> laminin-12 complex GO:0045160: myosin I --> myosin I complex GO:0045298: tubulin --> tubulin complex GO:0045300: acyl-[acyl-carrier protein] desaturase activity --> acyl-[acyl-carrier-protein] desaturase activity GO:0047025: 3-oxoacyl-[acyl-carrier protein] reductase (NADH) activity --> 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity GO:0047117: enoyl-[acyl-carrier protein] reductase (NADPH, A-specific) activity --> enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity GO:0047381: dodecanoyl-[acyl-carrier protein] hydrolase activity --> dodecanoyl-[acyl-carrier-protein] hydrolase activity GO:0047450: crotonoyl-[acyl-carrier protein] hydratase activity --> crotonoyl-[acyl-carrier-protein] hydratase activity GO:0047451: 3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase activity --> 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity GO:0050519: holo-[acyl-carrier protein] synthase activity --> holo-[acyl-carrier-protein] synthase activity Subset Changes ============== Subset term alterations None Term movement between subsets Term movements under GO:0003674, molecular_function + GO:0015460, transport accessory protein activity + GO:0008200, ion channel inhibitor activity + GO:0019871, sodium channel inhibitor activity + GO:0015457, auxiliary transport protein activity + GO:0019870, potassium channel inhibitor activity + GO:0019869, chloride channel inhibitor activity + GO:0017080, sodium channel regulator activity + GO:0005246, calcium channel regulator activity + GO:0016248, channel inhibitor activity + GO:0015458, low voltage-gated potassium channel auxiliary protein activity + GO:0015459, potassium channel regulator activity + GO:0019855, calcium channel inhibitor activity + GO:0016247, channel regulator activity + GO:0016249, channel localizer activity + GO:0016974, sodium channel auxiliary protein activity + GO:0017081, chloride channel regulator activity Term movements under GO:0003677, DNA binding + GO:0032448, DNA hairpin binding + GO:0032422, purine-rich negative regulatory element binding Term movements under GO:0003774, motor activity + GO:0060002, plus-end directed actin-filament motor activity + GO:0060001, minus-end directed actin-filament motor activity Term movements under GO:0003824, catalytic activity + GO:0032453, histone demethylase activity (H3-K4 specific) + GO:0010291, carotene beta-ring hydroxylase activity + GO:0010308, acireductone dioxygenase (Ni2+-requiring) activity + GO:0010295, (+)-abscisic acid 8'-hydroxylase activity + GO:0010298, dihydrocamalexic acid decarboxylase activity + GO:0010300, acyl-ACP synthetase activity + GO:0010309, acireductone dioxygenase (Fe2+-requiring) activity + GO:0010301, xanthoxin dehydrogenase activity + GO:0032441, pheophorbide a oxygenase activity + GO:0032451, demethylase activity + GO:0032440, 2-alkenal reductase activity + GO:0010302, 2-oxoglutarate-dependent dioxygenase activity + GO:0032452, histone demethylase activity + GO:0032454, histone demethylase activity (H3-K9 specific) + GO:0010293, abscisic aldehyde oxidase activity + GO:0032442, phenylcoumaran benzylic ether reductase activity Term movements under GO:0004872, receptor activity - GO:0030106, MHC class I receptor activity - GO:0045012, MHC class II receptor activity + GO:0032394, MHC class Ib receptor activity + GO:0032393, MHC class I receptor activity + GO:0032397, activating MHC class I receptor activity + GO:0032395, MHC class II receptor activity + GO:0032396, inhibitory MHC class I receptor activity Term movements under GO:0005215, transporter activity - GO:0008200, ion channel inhibitor activity - GO:0015460, transport accessory protein activity - GO:0019871, sodium channel inhibitor activity - GO:0015457, auxiliary transport protein activity - GO:0019870, potassium channel inhibitor activity - GO:0019869, chloride channel inhibitor activity - GO:0017080, sodium channel regulator activity - GO:0005246, calcium channel regulator activity - GO:0016248, channel inhibitor activity - GO:0015458, low voltage-gated potassium channel auxiliary protein activity - GO:0015459, potassium channel regulator activity - GO:0019855, calcium channel inhibitor activity - GO:0016247, channel regulator activity - GO:0016249, channel localizer activity - GO:0017081, chloride channel regulator activity - GO:0016974, sodium channel auxiliary protein activity + GO:0010292, GTP:GDP antiporter activity + GO:0043682, copper-transporting ATPase activity + GO:0010290, chlorophyll catabolite transporter activity Term movements under GO:0005515, protein binding + GO:0032427, GBD domain binding + GO:0032407, MutSalpha complex binding + GO:0032406, MutLbeta complex binding + GO:0032405, MutLalpha complex binding + GO:0032408, MutSbeta complex binding + GO:0032399, HECT domain binding + GO:0032404, mismatch repair complex binding + GO:0032403, protein complex binding Term movements under GO:0005575, cellular_component + GO:0032473, external side of mitochondrial outer membrane + GO:0010287, plastoglobule + GO:0032419, extrinsic to lysosome membrane + GO:0032426, stereocilium bundle tip + GO:0032420, stereocilium + GO:0032432, actin filament bundle + GO:0032437, cuticular plate + GO:0032433, filopodium tip Term movements under GO:0005622, intracellular + GO:0032421, stereocilium bundle + GO:0032426, stereocilium bundle tip Term movements under GO:0005623, cell + GO:0032420, stereocilium + GO:0032433, filopodium tip Term movements under GO:0005654, nucleoplasm + GO:0000418, DNA-directed RNA polymerase IV complex + GO:0000420, DNA-directed RNA polymerase IVa complex + GO:0000419, DNA-directed RNA polymerase IVb complex Term movements under GO:0005737, cytoplasm + GO:0032477, homodimeric decaprenyl diphosphate synthase complex + GO:0032437, cuticular plate Term movements under GO:0005739, mitochondrion + GO:0032473, external side of mitochondrial outer membrane + GO:0032478, heterotetrameric decaprenyl diphosphate synthase complex Term movements under GO:0005764, lysosome + GO:0032419, extrinsic to lysosome membrane Term movements under GO:0005856, cytoskeleton + GO:0032432, actin filament bundle + GO:0032437, cuticular plate Term movements under GO:0005886, plasma membrane + GO:0032398, MHC class Ib protein complex Term movements under GO:0005941, unlocalized protein complex - GO:0019009, alt id for GO:0019008, molybdopterin synthase complex Term movements under GO:0005975, carbohydrate metabolism + GO:0010306, rhamnogalacturonan II biosynthesis + GO:0010289, homogalacturonan biosynthesis Term movements under GO:0006259, DNA metabolism + GO:0032423, regulation of mismatch repair + GO:0032425, positive regulation of mismatch repair + GO:0032201, telomere maintenance via semi-conservative replication + GO:0032424, negative regulation of mismatch repair Term movements under GO:0006464, protein modification - GO:0043329, protein targeting to membrane during ubiquitin-dependent protein catabolism via the MVB pathway - GO:0043328, protein targeting to vacuole during ubiquitin-dependent protein catabolism via the MVB pathway - GO:0002497, proteosomal proteolysis associated with antigen processing and presentation - GO:0030433, ER-associated protein catabolism - GO:0031146, SCF-dependent proteasomal ubiquitin-dependent protein catabolism - GO:0030579, ubiquitin-dependent SMAD protein catabolism - GO:0007092, anaphase-promoting complex activation during mitotic cell cycle - GO:0006511, ubiquitin-dependent protein catabolism - GO:0043161, proteasomal ubiquitin-dependent protein catabolism - GO:0031145, anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism - GO:0008054, cyclin catabolism - GO:0043162, ubiquitin-dependent protein catabolism via the multivesicular body pathway + GO:0032447, protein urmylation + GO:0032446, protein modification by small protein conjugation + GO:0032455, nerve growth factor processing Term movements under GO:0006629, lipid metabolism + GO:0032443, regulation of ergosterol biosynthesis Term movements under GO:0006810, transport + GO:0032457, fast endocytic recycling + GO:0032456, endocytic recycling + GO:0032458, slow endocytic recycling + GO:0032445, fructose import Term movements under GO:0006811, ion transport + GO:0032472, Golgi calcium ion transport + GO:0060003, copper ion export Term movements under GO:0006950, response to stress + GO:0032423, regulation of mismatch repair + GO:0010286, heat acclimation + GO:0000169, activation of MAPK activity during osmolarity sensing + GO:0000208, nuclear translocation of MAPK during osmolarity sensing + GO:0007232, osmosensory signaling pathway via Sho1 osmosensor + GO:0000168, activation of MAPKK activity during osmolarity sensing + GO:0000167, activation of MAPKKK activity during osmolarity sensing + GO:0032424, negative regulation of mismatch repair + GO:0007233, activation of Pbs2 kinase + GO:0000161, MAPKKK cascade during osmolarity sensing + GO:0007231, osmosensory signaling pathway + GO:0032425, positive regulation of mismatch repair + GO:0000173, inactivation of MAPK activity during osmolarity sensing + GO:0007234, osmosensory signaling pathway via two-component system Term movements under GO:0006996, organelle organization and biogenesis + GO:0032438, melanosome organization and biogenesis Term movements under GO:0007267, cell-cell signaling + GO:0048914, myelination of anterior lateral line nerve axons + GO:0048897, myelination of lateral line nerve axons + GO:0048932, myelination of posterior lateral line nerve axons + GO:0060012, synaptic transmission, glycinergic Term movements under GO:0007275, development - GO:0000903, cellular morphogenesis during vegetative growth + GO:0055024, regulation of cardiac muscle development + GO:0055021, regulation of cardiac muscle growth + GO:0055019, negative regulation of cardiac muscle fiber development + GO:0055025, positive regulation of cardiac muscle development + GO:0032474, otolith morphogenesis + GO:0002089, lens morphogenesis (sensu Vertebrata) + GO:0010305, leaf vascular tissue pattern formation + GO:0032475, otolith formation + GO:0055023, positive regulation of cardiac muscle growth + GO:0055020, positive regulation of cardiac muscle fiber development + GO:0055022, negative regulation of cardiac muscle growth + GO:0055018, regulation of cardiac muscle fiber development + GO:0055026, negative regulation of cardiac muscle development Term movements under GO:0007582, physiological process + GO:0032467, positive regulation of cytokinesis + GO:0032439, endosome localization + GO:0002497, proteosomal proteolysis associated with antigen processing and presentation + GO:0060012, synaptic transmission, glycinergic + GO:0060003, copper ion export + GO:0032466, negative regulation of cytokinesis + GO:0032465, regulation of cytokinesis + GO:0032418, lysosome localization + GO:0032445, fructose import Term movements under GO:0008150, biological_process + GO:0010288, response to lead ion + GO:0010312, detoxification of zinc ion + GO:0010299, detoxification of cobalt ion Term movements under GO:0008152, metabolism + GO:0010310, regulation of hydrogen peroxide metabolism Term movements under GO:0008283, cell proliferation + GO:0060011, Sertoli cell proliferation Term movements under GO:0009056, catabolism + GO:0010304, PSII associated light-harvesting complex II catabolism + GO:0032434, regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0032435, negative regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0032436, positive regulation of proteasomal ubiquitin-dependent protein catabolism Term movements under GO:0009058, biosynthesis + GO:0032443, regulation of ergosterol biosynthesis + GO:0010306, rhamnogalacturonan II biosynthesis + GO:0010289, homogalacturonan biosynthesis Term movements under GO:0009536, plastid + GO:0010287, plastoglobule Term movements under GO:0009605, response to external stimulus + GO:0060005, vestibular reflex + GO:0060006, angular vestibuloocular reflex + GO:0060004, reflex process + GO:0050883, musculoskeletal movement, spinal reflex action + GO:0060007, linear vestibuloocular reflex Term movements under GO:0009628, response to abiotic stimulus + GO:0010286, heat acclimation + GO:0000169, activation of MAPK activity during osmolarity sensing + GO:0000208, nuclear translocation of MAPK during osmolarity sensing + GO:0007232, osmosensory signaling pathway via Sho1 osmosensor + GO:0000168, activation of MAPKK activity during osmolarity sensing + GO:0000167, activation of MAPKKK activity during osmolarity sensing + GO:0007233, activation of Pbs2 kinase + GO:0000161, MAPKKK cascade during osmolarity sensing + GO:0007231, osmosensory signaling pathway + GO:0000173, inactivation of MAPK activity during osmolarity sensing + GO:0007234, osmosensory signaling pathway via two-component system Term movements under GO:0009653, morphogenesis + GO:0060008, Sertoli cell differentiation + GO:0060011, Sertoli cell proliferation + GO:0010311, lateral root formation + GO:0060010, Sertoli cell fate commitment + GO:0060009, Sertoli cell development Term movements under GO:0009719, response to endogenous stimulus + GO:0032423, regulation of mismatch repair + GO:0032425, positive regulation of mismatch repair + GO:0032424, negative regulation of mismatch repair Term movements under GO:0016023, cytoplasmic membrane-bound vesicle + GO:0042470, melanosome Term movements under GO:0016043, cell organization and biogenesis + GO:0032401, establishment of melanosome localization + GO:0032402, melanosome transport + GO:0032457, fast endocytic recycling + GO:0032472, Golgi calcium ion transport + GO:0032456, endocytic recycling + GO:0032458, slow endocytic recycling + GO:0032400, melanosome localization Term movements under GO:0016049, cell growth + GO:0000903, cellular morphogenesis during vegetative growth Term movements under GO:0016740, transferase activity + GO:0010294, abscisic acid glucosyltransferase activity Term movements under GO:0016787, hydrolase activity + GO:0032450, maltase activity + GO:0010296, prenylcysteine methylesterase activity + GO:0010303, limit dextrinase activity + GO:0043682, copper-transporting ATPase activity + GO:0032428, beta-N-acetylgalactosaminidase activity Term movements under GO:0019538, protein metabolism + GO:0016598, protein arginylation + GO:0032434, regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0032464, positive regulation of protein homooligomerization + GO:0043329, protein targeting to membrane during ubiquitin-dependent protein catabolism via the MVB pathway + GO:0043328, protein targeting to vacuole during ubiquitin-dependent protein catabolism via the MVB pathway + GO:0032460, negative regulation of protein oligomerization + GO:0042787, protein ubiquitination during ubiquitin-dependent protein catabolism + GO:0032436, positive regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0032463, negative regulation of protein homooligomerization + GO:0032461, positive regulation of protein oligomerization + GO:0010304, PSII associated light-harvesting complex II catabolism + GO:0032462, regulation of protein homooligomerization + GO:0007092, anaphase-promoting complex activation during mitotic cell cycle + GO:0032459, regulation of protein oligomerization + GO:0032435, negative regulation of proteasomal ubiquitin-dependent protein catabolism Term movements under GO:0019725, cell homeostasis + GO:0032470, elevation of endoplasmic reticulum calcium ion concentration + GO:0032468, Golgi calcium ion homeostasis + GO:0032469, endoplasmic reticulum calcium ion homeostasis + GO:0032471, reduction of endoplasmic reticulum calcium ion concentration Term movements under GO:0030154, cell differentiation + GO:0060008, Sertoli cell differentiation + GO:0060010, Sertoli cell fate commitment + GO:0060009, Sertoli cell development Term movements under GO:0030234, enzyme regulator activity + GO:0010307, acetylglutamate kinase regulator activity Term movements under GO:0030246, carbohydrate binding + GO:0010297, heteroglycan binding Term movements under GO:0040007, growth + GO:0055021, regulation of cardiac muscle growth + GO:0055023, positive regulation of cardiac muscle growth + GO:0055022, negative regulation of cardiac muscle growth Term movements under GO:0043226, organelle - GO:0042470, melanosome + GO:0032421, stereocilium bundle + GO:0032426, stereocilium bundle tip Term movements under GO:0043234, protein complex - GO:0019009, alt id for GO:0019008, molybdopterin synthase complex + GO:0000418, DNA-directed RNA polymerase IV complex + GO:0032444, activin responsive factor complex + GO:0032398, MHC class Ib protein complex + GO:0032478, heterotetrameric decaprenyl diphosphate synthase complex + GO:0032476, decaprenyl diphosphate synthase complex + GO:0032477, homodimeric decaprenyl diphosphate synthase complex + GO:0000420, DNA-directed RNA polymerase IVa complex + GO:0000419, DNA-directed RNA polymerase IVb complex + GO:0032449, CBM complex Term movements under GO:0050789, regulation of biological process + GO:0032443, regulation of ergosterol biosynthesis + GO:0055021, regulation of cardiac muscle growth + GO:0032411, positive regulation of transporter activity + GO:0032431, activation of phospholipase A2 + GO:0032436, positive regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0055023, positive regulation of cardiac muscle growth + GO:0010310, regulation of hydrogen peroxide metabolism + GO:0055022, negative regulation of cardiac muscle growth + GO:0032465, regulation of cytokinesis + GO:0032429, regulation of phospholipase A2 activity + GO:0032459, regulation of protein oligomerization + GO:0032467, positive regulation of cytokinesis + GO:0032434, regulation of proteasomal ubiquitin-dependent protein catabolism + GO:0055019, negative regulation of cardiac muscle fiber development + GO:0043006, calcium-dependent phospholipase A2 activation + GO:0032410, negative regulation of transporter activity + GO:0032461, positive regulation of protein oligomerization + GO:0032414, positive regulation of ion transporter activity + GO:0032417, positive regulation of sodium:hydrogen antiporter activity + GO:0032425, positive regulation of mismatch repair + GO:0032413, negative regulation of ion transporter activity + GO:0032409, regulation of transporter activity + GO:0055026, negative regulation of cardiac muscle development + GO:0055024, regulation of cardiac muscle development + GO:0055025, positive regulation of cardiac muscle development + GO:0032460, negative regulation of protein oligomerization + GO:0032424, negative regulation of mismatch repair + GO:0032462, regulation of protein homooligomerization + GO:0055020, positive regulation of cardiac muscle fiber development + GO:0055018, regulation of cardiac muscle fiber development + GO:0032423, regulation of mismatch repair + GO:0032415, regulation of sodium:hydrogen antiporter activity + GO:0032464, positive regulation of protein homooligomerization + GO:0032430, positive regulation of phospholipase A2 activity + GO:0032416, negative regulation of sodium:hydrogen antiporter activity + GO:0032463, negative regulation of protein homooligomerization + GO:0032466, negative regulation of cytokinesis + GO:0032412, regulation of ion transporter activity + GO:0032435, negative regulation of proteasomal ubiquitin-dependent protein catabolism Term changes ============ KEY: '+' : added, '-' : removed, '*' : changed GO:0000146, microfilament motor activity +1 synonym(s) GO:0000903, cellular morphogenesis during vegetative growth +1 relationship(s) GO:0002291, T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell +1 synonym(s) GO:0003820, class I major histocompatibility complex antigen *comment GO:0003821, class II major histocompatibility complex antigen *comment GO:0004034, aldose 1-epimerase activity *def; +2 synonym(s) GO:0004313, [acyl-carrier-protein] S-acetyltransferase activity *name; +1 synonym(s) GO:0004314, [acyl-carrier-protein] S-malonyltransferase activity *name; +1 synonym(s) GO:0004315, 3-oxoacyl-[acyl-carrier-protein] synthase activity *name; +1 synonym(s) GO:0004316, 3-oxoacyl-[acyl-carrier-protein] reductase activity *name; +1 synonym(s) GO:0004317, 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity *name; +1 synonym(s) GO:0004318, enoyl-[acyl-carrier-protein] reductase (NADH) activity *name; +1 synonym(s) GO:0004319, enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity *name; +1 synonym(s) GO:0004320, oleoyl-[acyl-carrier-protein] hydrolase activity *name; +1 synonym(s) GO:0004503, monophenol monooxygenase activity +1 synonym(s) GO:0004558, alpha-glucosidase activity -1 synonym(s) GO:0004894, T cell receptor activity *comment GO:0005042, netrin receptor activity +def GO:0005043, repulsive netrin receptor activity +def GO:0005606, laminin-1 complex *name GO:0005607, laminin-2 complex *name GO:0005608, laminin-3 complex *name GO:0005609, laminin-4 complex *name GO:0005610, laminin-5 complex *name GO:0005611, laminin-6 complex *name GO:0005612, laminin-7 complex *name GO:0005633, ascus lipid droplet +def GO:0005665, DNA-directed RNA polymerase II, core complex *def GO:0005666, DNA-directed RNA polymerase III complex *def GO:0005736, DNA-directed RNA polymerase I complex *def GO:0005771, multivesicular body +2 synonym(s) GO:0005835, fatty acid synthase complex *1 synonym(s) GO:0005859, muscle myosin complex *name GO:0005872, minus-end kinesin complex +def GO:0005873, plus-end kinesin complex +def GO:0005931, nexin complex *name GO:0006189, 'de novo' IMP biosynthesis +def GO:0006207, 'de novo' pyrimidine base biosynthesis +def GO:0006874, calcium ion homeostasis -3 synonym(s) GO:0006898, receptor-mediated endocytosis *name; *1 synonym(s) GO:0007281, germ cell development +1 synonym(s) GO:0008267, poly-glutamine tract binding +def GO:0008352, katanin complex *name GO:0008659, (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity *name; +1 synonym(s) GO:0008693, 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity *name; +1 synonym(s) GO:0008770, [acyl-carrier-protein] phosphodiesterase activity *name; +1 synonym(s) GO:0008779, acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity *name; +1 synonym(s) GO:0008780, acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity *name; +1 synonym(s) GO:0008897, phosphopantetheinyltransferase activity *1 synonym(s) GO:0008922, long-chain-fatty-acid-[acyl-carrier-protein] ligase activity *name; +1 synonym(s) GO:0008951, palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity *name GO:0008953, penicillin amidase activity +1 synonym(s) GO:0009576, leucoplast stroma +def GO:0009577, elaioplast stroma +def GO:0015010, tetrahydrocorphin metabolism +def GO:0016295, myristoyl-[acyl-carrier-protein] hydrolase activity *name; *def GO:0016296, palmitoyl-[acyl-carrier-protein] hydrolase activity *name; +1 synonym(s) GO:0016297, acyl-[acyl-carrier-protein] hydrolase activity *name; +1 synonym(s) GO:0016459, myosin complex *name GO:0016460, myosin II complex *name GO:0016461, unconventional myosin complex *name GO:0016631, enoyl-[acyl-carrier-protein] reductase activity *name; +1 synonym(s) GO:0016701, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen +def GO:0016702, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen +def GO:0016703, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) +def GO:0016705, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen +def GO:0016706, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors +def GO:0016708, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor *name; +def GO:0016709, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen *name; +def GO:0016712, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen +def GO:0016713, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen +def GO:0016714, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen +def GO:0016715, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen +def GO:0016716, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen +def GO:0016717, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water +def GO:0019008, molybdopterin synthase complex +1 alt_id(s); +def; +1 synonym(s) GO:0019171, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity *name; +1 synonym(s) GO:0030106, MHC class I receptor activity +comment; +is_obsolete GO:0030107, HLA-A specific inhibitory MHC class I receptor activity *def GO:0030108, HLA-A specific activating MHC class I receptor activity *def GO:0030109, HLA-B specific inhibitory MHC class I receptor activity *def GO:0030110, HLA-C specific inhibitory MHC class I receptor activity *def GO:0031108, holo-[acyl-carrier-protein] biosynthesis *name GO:0031253, cell projection membrane +2 synonym(s) GO:0031474, myosin IV complex *name GO:0031475, myosin V complex *name GO:0031476, myosin VI complex *name GO:0031477, myosin VII complex *name GO:0031478, myosin VIII complex *name GO:0031479, myosin IX complex *name GO:0031480, myosin X complex *name GO:0031481, myosin XI complex *name GO:0031482, myosin XII complex *name GO:0031483, myosin XIII complex *name GO:0031484, myosin XIV complex *name GO:0031485, myosin XV complex *name GO:0031486, myosin XVI complex *name GO:0031487, myosin XVII complex *name GO:0031488, myosin XVIII complex *name GO:0031556, ribosome-mediated transcriptional attenuation *def GO:0042096, alpha-beta T cell receptor activity *comment GO:0042099, gamma-delta T cell receptor activity *comment GO:0042105, alpha-beta T cell receptor complex +1 synonym(s) GO:0042106, gamma-delta T cell receptor complex +1 synonym(s) GO:0042385, myosin III complex *name GO:0042608, T cell receptor binding +1 synonym(s) GO:0042611, MHC protein complex *def GO:0042612, MHC class I protein complex *def GO:0042613, MHC class II protein complex *def GO:0042642, actomyosin, myosin complex part *name GO:0042967, acyl-carrier-protein biosynthesis *name GO:0043010, eye development (sensu Vertebrata) +1 synonym(s) GO:0043257, laminin-8 complex *name GO:0043258, laminin-9 complex *name GO:0043259, laminin-10 complex *name GO:0043260, laminin-11 complex *name GO:0043261, laminin-12 complex *name GO:0043384, pre-T cell receptor complex +1 synonym(s) GO:0045012, MHC class II receptor activity *def; +comment; +is_obsolete GO:0045160, myosin I complex *name GO:0045298, tubulin complex *name GO:0045300, acyl-[acyl-carrier-protein] desaturase activity *name; +1 synonym(s) GO:0046536, dosage compensation complex *def GO:0046969, NAD-dependent histone deacetylase activity (H3-K9 specific) *def GO:0046996, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with NADH or NADPH as one donor, and the other dehydrogenated +def GO:0047025, 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity *name; +1 synonym(s) GO:0047117, enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity *name; +1 synonym(s) GO:0047381, dodecanoyl-[acyl-carrier-protein] hydrolase activity *name GO:0047450, crotonoyl-[acyl-carrier-protein] hydratase activity *name; +1 synonym(s) GO:0047451, 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity *name; +1 synonym(s) GO:0048593, eye morphogenesis (sensu Vertebrata) +1 synonym(s) GO:0048744, negative regulation of skeletal muscle fiber development +1 relationship(s) GO:0050498, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated +def GO:0050499, oxidoreductase activity, acting on phosphorus or arsenic in donors, with NAD(P)+ as acceptor +def GO:0050519, holo-[acyl-carrier-protein] synthase activity *name; +1 synonym(s) GO:0050852, T cell receptor signaling pathway +1 synonym(s) GO:0050856, regulation of T cell receptor signaling pathway +1 synonym(s) GO:0050860, negative regulation of T cell receptor signaling pathway +1 synonym(s) GO:0050862, positive regulation of T cell receptor signaling pathway +1 synonym(s) GO:0051010, microtubule plus-end binding -1 synonym(s) GO:0051011, microtubule minus-end binding -1 synonym(s) GO:0051864, histone demethylase activity (H3-K36 specific) +1 synonym(s); +1 xref(s) File Stats (for the new file) ========== biological_process: 12694 terms (12487 defined; 348 obsolete) cellular_component: 1967 terms (1912 defined; 128 obsolete) molecular_function: 8042 terms (7458 defined; 535 obsolete) totals: 22703 terms (21857/96.3% defined; 1011/4.5% obsolete)