! parsing: GO:0001508 ! parse: GO:0001508 using "regulation of action potential" => cdef(GO:0065007, [OBO_REL:regulates=PATO:0001463]) [-2] ! no existing xp def ! def: "Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination." ! PROPOSED: biological regulation that OBO_REL:regulates action potential [cdef(GO:0065007, [OBO_REL:regulates=PATO:0001463])] [Term] id: GO:0001508 ! regulation of action potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates PATO:0001463 ! action potential synonym: "biological regulation of action potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0001508: 3.57 ! parsing: GO:0001659 ! No parse for: GO:0001659 thermoregulation ! parsing: GO:0001660 ! No parse for: GO:0001660 fever ! parsing: GO:0001678 ! No parse for: GO:0001678 cell glucose homeostasis ! parsing: GO:0001776 ! Already have xp for: GO:0001776 leukocyte homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of leukocyte [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000738])] ! parsing: GO:0001780 ! Already have xp for: GO:0001780 neutrophil homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of neutrophil [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000775])] ! parsing: GO:0001782 ! Already have xp for: GO:0001782 B cell homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of B cell [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000236])] ! parsing: GO:0001894 ! No parse for: GO:0001894 tissue homeostasis ! parsing: GO:0001895 ! parse: GO:0001895 using "retinal homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17898]) [-2] ! no existing xp def ! def: "A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of retinal [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17898])] [Term] id: GO:0001895 ! retinal homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:17898 ! retinal synonym: "( 2 E, 4 E, 6 E, 8 E) -3, 7-dimethyl-9-( 2, 6, 6-trimethylcyclohex-1-en-1-yl) nona-2, 4, 6, 8-tetraenal chemical homeostasis" EXACT [OBOL:automatic] synonym: "( 2 E, 4 E, 6 E, 8 E) -3, 7-dimethyl-9-( 2, 6, 6-trimethylcyclohex-1-en-1-yl) nona-2, 4, 6, 8-tetraenal homeostasis" EXACT [OBOL:automatic] synonym: "Retinal chemical homeostasis" EXACT [OBOL:automatic] synonym: "Retinal homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0001895: 9.15 ! parsing: GO:0001922 ! Already have xp for: GO:0001922 B-1 B cell homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of B-1 B cell [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000819])] ! parsing: GO:0001984 ! No parse for: GO:0001984 vasodilation of artery during baroreceptor response to increased blood pressure ! parsing: GO:0001987 ! No parse for: GO:0001987 vasoconstriction of artery during baroreceptor response to lowering of blood pressure ! parsing: GO:0001994 ! No parse for: GO:0001994 norepinephrine-epinephrine vasoconstriction during regulation of blood pressure ! parsing: GO:0001998 ! No parse for: GO:0001998 angiotensin mediated vasoconstriction during regulation of blood pressure ! parsing: GO:0002006 ! No parse for: GO:0002006 vasopressin mediated vasoconstriction during blood pressure control ! parsing: GO:0002012 ! No parse for: GO:0002012 vasoconstriction of artery during chemoreceptor response to lowering of blood pressure ! parsing: GO:0002014 ! No parse for: GO:0002014 vasoconstriction of artery during ischemic response to lowering of blood pressure ! parsing: GO:0002025 ! No parse for: GO:0002025 norepinephrine-epinephrine vasodilation during regulation of blood pressure ! parsing: GO:0002033 ! No parse for: GO:0002033 angiotensin mediated vasodilation during regulation of blood pressure ! parsing: GO:0002034 ! No parse for: GO:0002034 renin-angiotensin regulation of blood vessel size ! parsing: GO:0002260 ! Already have xp for: GO:0002260 lymphocyte homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of lymphocyte [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000542])] ! parsing: GO:0002261 ! No parse for: GO:0002261 mucosal lymphocyte homeostasis ! parsing: GO:0002262 ! Already have xp for: GO:0002262 myeloid cell homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of myeloid cell [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000763])] ! parsing: GO:0002527 ! Already have xp for: GO:0002527 vasodilation during acute inflammatory response ! CURRENT : vasodilation that OBO_REL:part_of acute inflammatory response [cdef(GO:0042311, [OBO_REL:part_of=GO:0002526])] ! parsing: GO:0002528 ! Already have xp for: GO:0002528 regulation of vascular permeability during acute inflammatory response ! CURRENT : regulation of vascular permeability that OBO_REL:part_of acute inflammatory response [cdef(GO:0043114, [OBO_REL:part_of=GO:0002526])] ! parsing: GO:0006873 ! Already have xp for: GO:0006873 cellular ion homeostasis ! CURRENT : ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0050801, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006874 ! Already have xp for: GO:0006874 cellular calcium ion homeostasis ! CURRENT : calcium ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055074, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006875 ! Already have xp for: GO:0006875 cellular metal ion homeostasis ! CURRENT : metal ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055065, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006876 ! Already have xp for: GO:0006876 cellular cadmium ion homeostasis ! CURRENT : cadmium ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055073, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006877 ! Already have xp for: GO:0006877 cellular cobalt ion homeostasis ! CURRENT : cobalt ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055068, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006878 ! Already have xp for: GO:0006878 cellular copper ion homeostasis ! CURRENT : copper ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055070, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006879 ! Already have xp for: GO:0006879 cellular iron ion homeostasis ! CURRENT : iron ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055072, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006882 ! Already have xp for: GO:0006882 cellular zinc ion homeostasis ! CURRENT : zinc ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055069, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006883 ! Already have xp for: GO:0006883 cellular sodium ion homeostasis ! CURRENT : sodium ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055078, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0006884 ! parse: GO:0006884 using "regulation of cell volume" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000918, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! no existing xp def ! def: "Any process that modulates the volume of a cell." ! PROPOSED: biological regulation that OBO_REL:regulates cdef(PATO:0000918, [OBO_REL:inheres_in=CL:0000000]) [cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000918, [OBO_REL:inheres_in=CL:0000000])])] [Term] id: GO:0006884 ! regulation of cell volume intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates cell_volume synonym: "biological regulation of cell cell volume" EXACT [OBOL:automatic] synonym: "biological regulation of cell volume" EXACT [OBOL:automatic] synonym: "regulation of cell cell volume" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006884: 4.32 ! parsing: GO:0006885 ! parse: GO:0006885 using "regulation of pH" => cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]) [-2] ! no existing xp def ! def: "Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion." ! PROPOSED: biological regulation that OBO_REL:regulates acidity [cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842])] [Term] id: GO:0006885 ! regulation of pH intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates PATO:0001842 ! acidity synonym: "biological regulation of acidity" EXACT [OBOL:automatic] synonym: "biological regulation of pH" EXACT [OBOL:automatic] synonym: "regulation of acidity" EXACT [OBOL:automatic] ! seconds spent parsing GO:0006885: 3.62 ! parsing: GO:0006973 ! No parse for: GO:0006973 intracellular accumulation of glycerol ! parsing: GO:0007035 ! parse: GO:0007035 using "vacuolar acidification" => cdef(GO:0045851, [OBO_REL:unfolds_in=GO:0005773]) [-2] ! no existing xp def ! def: "Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion." ! PROPOSED: pH reduction that OBO_REL:unfolds_in vacuole [cdef(GO:0045851, [OBO_REL:unfolds_in=GO:0005773])] [Term] id: GO:0007035 ! vacuolar acidification intersection_of: GO:0045851 ! pH reduction intersection_of: OBO_REL:unfolds_in GO:0005773 ! vacuole synonym: "pH reduction in the vacuole" EXACT [OBOL:automatic] synonym: "pH reduction in vacuole" EXACT [OBOL:automatic] synonym: "pH reduction through the vacuole" EXACT [OBOL:automatic] synonym: "vacuolar pH reduction" EXACT [OBOL:automatic] ! seconds spent parsing GO:0007035: 21.83 ! parsing: GO:0007036 ! parse: GO:0007036 using "vacuolar calcium ion homeostasis" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005773]) [-2] ! parse: GO:0007036 using "vacuolar calcium ion homeostasis" => cdef(cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:29108]), [OBO_REL:unfolds_in=GO:0005773]) [-3] ! parse: GO:0007036 using "vacuolar calcium ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22984]), [OBO_REL:unfolds_in=GO:0005773]) [-3] ! parse: GO:0007036 using "vacuolar calcium ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320]), [OBO_REL:unfolds_in=GO:0005773]) [-3] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of calcium ions in the vacuole or between a vacuole and its surroundings." ! PROPOSED: calcium ion homeostasis that OBO_REL:unfolds_in vacuole [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005773])] [Term] id: GO:0007036 ! vacuolar calcium ion homeostasis intersection_of: GO:0055074 ! calcium ion homeostasis intersection_of: OBO_REL:unfolds_in GO:0005773 ! vacuole synonym: "regulation of calcium ion concentration in the vacuole" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration in vacuole" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration through the vacuole" EXACT [OBOL:automatic] synonym: "vacuolar regulation of calcium ion concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0007036: 27.58 ! parsing: GO:0007042 ! No parse for: GO:0007042 lysosomal lumen acidification ! parsing: GO:0007204 ! parse: GO:0007204 using "cytosolic calcium ion concentration elevation" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005829, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0007204 using "cytosolic calcium ion concentration elevation" => cdef(cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005829]) [-4] ! parse: GO:0007204 using "elevation of cytosolic calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005829, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "Any process that increases the concentration of calcium ions in the cytosol." ! PROPOSED: cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]) that OBO_REL:unfolds_in cytosol [cdef(cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005829])] [Term] id: GO:0007204 ! elevation of cytosolic calcium ion concentration intersection_of: elevation_of_calcium_ions_concentration intersection_of: OBO_REL:unfolds_in GO:0005829 ! cytosol synonym: "cytosolic calcium (2 +) concentration elevation" EXACT [OBOL:automatic] synonym: "cytosolic calcium (II) cation concentration elevation" EXACT [OBOL:automatic] synonym: "cytosolic calcium ions concentration elevation" EXACT [OBOL:automatic] synonym: "cytosolic elevation of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "cytosolic elevation of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "cytosolic elevation of calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0007204: 42.22 ! parsing: GO:0007639 ! No parse for: GO:0007639 homeostasis of number of meristem cells ! parsing: GO:0008361 ! parse: GO:0008361 using "regulation of cell size" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! no existing xp def ! def: "Any process that modulates the size of a cell." ! PROPOSED: biological regulation that OBO_REL:regulates cdef(PATO:0000117, [OBO_REL:inheres_in=CL:0000000]) [cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=CL:0000000])])] [Term] id: GO:0008361 ! regulation of cell size intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates cell_size synonym: "biological regulation of cell cell size" EXACT [OBOL:automatic] synonym: "biological regulation of cell size" EXACT [OBOL:automatic] synonym: "regulation of cell cell size" EXACT [OBOL:automatic] ! seconds spent parsing GO:0008361: 19.49 ! parsing: GO:0009992 ! Already have xp for: GO:0009992 cellular osmoregulation ! CURRENT : osmoregulation that OBO_REL:part_of cellularization [cdef(GO:0018987, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0010217 ! Already have xp for: GO:0010217 cellular aluminum ion homeostasis ! CURRENT : aluminum ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055079, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0010268 ! parse: GO:0010268 using "brassinosteroid homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:22921]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an internal equilibrium of brassinosteroids within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of brassinosteroid [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:22921])] [Term] id: GO:0010268 ! brassinosteroid homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:22921 ! brassinosteroid ! seconds spent parsing GO:0010268: 3.77 ! parsing: GO:0010336 ! No parse for: GO:0010336 gibberellic acid homeostasis ! parsing: GO:0016057 ! No parse for: GO:0016057 changes in polarization state of photoreceptor cell membrane ! parsing: GO:0016058 ! No parse for: GO:0016058 maintenance of rhodopsin mediated signaling ! parsing: GO:0016243 ! parse: GO:0016243 using "regulation of autophagic vacuole size" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=GO:0005776])]) [-3] ! no existing xp def ! def: "Any process that modulates the size of the autophagic vacuole." ! PROPOSED: biological regulation that OBO_REL:regulates cdef(PATO:0000117, [OBO_REL:inheres_in=GO:0005776]) [cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=GO:0005776])])] [Term] id: GO:0016243 ! regulation of autophagic vacuole size intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates autophagic_vacuole_size synonym: "biological regulation of autophagic vacuole size" EXACT [OBOL:automatic] synonym: "biological regulation of autophagosome size" EXACT [OBOL:automatic] synonym: "regulation of autophagosome size" EXACT [OBOL:automatic] ! seconds spent parsing GO:0016243: 3.76 ! parsing: GO:0018987 ! No parse for: GO:0018987 osmoregulation ! parsing: GO:0019228 ! No parse for: GO:0019228 generation of action potential ! parsing: GO:0019725 ! No parse for: GO:0019725 cellular homeostasis ! parsing: GO:0030002 ! Already have xp for: GO:0030002 cellular anion homeostasis ! CURRENT : anion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055081, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030003 ! Already have xp for: GO:0030003 cellular cation homeostasis ! CURRENT : cation homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055080, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030004 ! Already have xp for: GO:0030004 cellular monovalent inorganic cation homeostasis ! CURRENT : monovalent inorganic cation homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055067, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030005 ! Already have xp for: GO:0030005 cellular di-, tri-valent inorganic cation homeostasis ! CURRENT : di-, tri-valent inorganic cation homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055066, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030007 ! Already have xp for: GO:0030007 cellular potassium ion homeostasis ! CURRENT : potassium ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055075, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030026 ! Already have xp for: GO:0030026 cellular manganese ion homeostasis ! CURRENT : manganese ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055071, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030104 ! parse: GO:0030104 using "water homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:15377]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an internal equilibrium of water within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of water [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:15377])] [Term] id: GO:0030104 ! water homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:15377 ! water synonym: "WATER chemical homeostasis" EXACT [OBOL:automatic] synonym: "WATER homeostasis" EXACT [OBOL:automatic] synonym: "Water chemical homeostasis" EXACT [OBOL:automatic] synonym: "Water homeostasis" EXACT [OBOL:automatic] synonym: "oxidane chemical homeostasis" EXACT [OBOL:automatic] synonym: "oxidane homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030104: 3.87 ! parsing: GO:0030319 ! Already have xp for: GO:0030319 cellular di-, tri-valent inorganic anion homeostasis ! CURRENT : di-, tri-valent inorganic anion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055061, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030320 ! Already have xp for: GO:0030320 cellular monovalent inorganic anion homeostasis ! CURRENT : monovalent inorganic anion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055083, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030322 ! No parse for: GO:0030322 stabilization of membrane potential ! parsing: GO:0030641 ! parse: GO:0030641 using "cellular hydrogen ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:24634]), [OBO_REL:part_of=GO:0007349]) [-3] ! parse: GO:0030641 using "cellular hydrogen ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:24634]), [OBO_REL:unfolds_in=CL:0000000]) [-3] ! parse: GO:0030641 using "cellular hydrogen ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:24634]), [OBO_REL:unfolds_in=GO:0005623]) [-3] ! parse: GO:0030641 using "proton homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:24636]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of proton [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:24636])] [Term] id: GO:0030641 ! cellular hydrogen ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:24636 ! proton synonym: "protium (1 +) chemical homeostasis" EXACT [OBOL:automatic] synonym: "protium (1 +) homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0030641: 48.75 ! parsing: GO:0030642 ! Already have xp for: GO:0030642 cellular sulfate ion homeostasis ! CURRENT : sulfate ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055063, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030643 ! Already have xp for: GO:0030643 cellular phosphate ion homeostasis ! CURRENT : phosphate ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055062, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0030644 ! Already have xp for: GO:0030644 cellular chloride ion homeostasis ! CURRENT : chloride ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055064, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0031413 ! parse: GO:0031413 using "buoyancy regulation" => cdef(GO:0065007, [OBO_REL:regulates=PATO:0001420]) [-2] ! parse: GO:0031413 using "regulation of buoyancy" => cdef(GO:0065007, [OBO_REL:regulates=PATO:0001420]) [-2] ! no existing xp def ! def: "Any process that modulates an organism's tendency or ability to rise or float in a fluid medium such as water or air, often through the use of stored gases." ! PROPOSED: biological regulation that OBO_REL:regulates buoyancy [cdef(GO:0065007, [OBO_REL:regulates=PATO:0001420])] [Term] id: GO:0031413 ! regulation of buoyancy intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates PATO:0001420 ! buoyancy synonym: "biological regulation of buoyancy" EXACT [OBOL:automatic] ! seconds spent parsing GO:0031413: 10.39 ! parsing: GO:0031649 ! No parse for: GO:0031649 heat generation ! parsing: GO:0031653 ! No parse for: GO:0031653 heat dissipation ! parsing: GO:0032364 ! parse: GO:0032364 using "oxygen homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:25805]) [-2] ! no existing xp def ! def: "A homeostatic process involved in the maintenance of an internal equilibrium of oxygen within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of oxygen [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:25805])] [Term] id: GO:0032364 ! oxygen homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:25805 ! oxygen ! seconds spent parsing GO:0032364: 3.83 ! parsing: GO:0032468 ! Already have xp for: GO:0032468 Golgi calcium ion homeostasis ! CURRENT : calcium ion homeostasis that OBO_REL:unfolds_in Golgi apparatus [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005794])] ! parsing: GO:0032469 ! Already have xp for: GO:0032469 endoplasmic reticulum calcium ion homeostasis ! CURRENT : calcium ion homeostasis that OBO_REL:unfolds_in endoplasmic reticulum [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005783])] ! parsing: GO:0032470 ! parse: GO:0032470 using "elevation of endoplasmic reticulum calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0032470 using "endoplasmic reticulum calcium ion concentration elevation" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "Any process that increases the concentration of calcium ions in the endoplasmic reticulum." ! PROPOSED: homeostatic process that OBO_REL:results_in_increase_in cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108]) [cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])])] [Term] id: GO:0032470 ! elevation of endoplasmic reticulum calcium ion concentration intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_increase_in ER_calcium_ion_concentration synonym: "ER calcium (2 +) concentration elevation" EXACT [OBOL:automatic] synonym: "ER calcium (II) cation concentration elevation" EXACT [OBOL:automatic] synonym: "ER calcium ion concentration elevation" EXACT [OBOL:automatic] synonym: "ER calcium ions concentration elevation" EXACT [OBOL:automatic] synonym: "elevation of ER calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "elevation of ER calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "elevation of ER calcium ion concentration" EXACT [OBOL:automatic] synonym: "elevation of ER calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0032470: 21.09 ! parsing: GO:0032471 ! parse: GO:0032471 using "ER calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0032471 using "endoplasmic reticulum calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0032471 using "reduction of ER calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0032471 using "reduction of endoplasmic reticulum calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "Any process that decreases the concentration of calcium ions in the endoplasmic reticulum." ! PROPOSED: homeostatic process that OBO_REL:results_in_decrease_in cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108]) [cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])])] [Term] id: GO:0032471 ! reduction of endoplasmic reticulum calcium ion concentration intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_decrease_in ER_calcium_ion_concentration synonym: "reduction of ER calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "reduction of ER calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "reduction of ER calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0032471: 28.62 ! parsing: GO:0032847 ! Already have xp for: GO:0032847 regulation of cellular pH reduction ! CURRENT : regulation of biological process that regulates cellular pH reduction [cdef(GO:0050789, [regulates=GO:0051452])] ! parsing: GO:0032848 ! Already have xp for: GO:0032848 negative regulation of cellular pH reduction ! CURRENT : negative regulation of biological process that regulates cellular pH reduction [cdef(GO:0048519, [regulates=GO:0051452])] ! parsing: GO:0032849 ! Already have xp for: GO:0032849 positive regulation of cellular pH reduction ! CURRENT : positive regulation of biological process that regulates cellular pH reduction [cdef(GO:0048518, [regulates=GO:0051452])] ! parsing: GO:0033023 ! Already have xp for: GO:0033023 mast cell homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of mast cell [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000097])] ! parsing: GO:0033212 ! No relation defined: results_in_update_of ! parse: GO:0033212 using "iron assimilation" => cdef(GO:0008152, [results_in_update_of=CHEBI:18248]) [-2] ! no existing xp def ! def: "A process by which iron is solubilized and transported into a cell." ! PROPOSED: metabolic process that results_in_update_of iron [cdef(GO:0008152, [results_in_update_of=CHEBI:18248])] [Term] id: GO:0033212 ! iron assimilation intersection_of: GO:0008152 ! metabolic process intersection_of: results_in_update_of CHEBI:18248 ! iron synonym: "Iron assimilation" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033212: 3.75 ! parsing: GO:0033213 ! No parse for: GO:0033213 iron assimilation by capture and transport ! parsing: GO:0033214 ! No parse for: GO:0033214 iron assimilation by chelation and transport ! parsing: GO:0033215 ! No parse for: GO:0033215 iron assimilation by reduction and transport ! parsing: GO:0033483 ! No parse for: GO:0033483 gas homeostasis ! parsing: GO:0033484 ! No parse for: GO:0033484 nitric oxide homeostasis ! parsing: GO:0033500 ! parse: GO:0033500 using "carbohydrate homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:23008]) [-2] ! no existing xp def ! def: "A homeostatic process involved in the maintenance of an internal equilibrium of a carbohydrate within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of carbohydrate [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:23008])] [Term] id: GO:0033500 ! carbohydrate homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:23008 ! carbohydrate ! seconds spent parsing GO:0033500: 3.79 ! parsing: GO:0033501 ! parse: GO:0033501 using "galactose homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:28260]) [-2] ! no existing xp def ! def: "A homeostatic process involved in the maintenance of an internal equilibrium of galactose within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of galactose [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:28260])] [Term] id: GO:0033501 ! galactose homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:28260 ! galactose synonym: "Galactose chemical homeostasis" EXACT [OBOL:automatic] synonym: "Galactose homeostasis" EXACT [OBOL:automatic] synonym: "galacto-hexose chemical homeostasis" EXACT [OBOL:automatic] synonym: "galacto-hexose homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0033501: 3.7 ! parsing: GO:0033502 ! No parse for: GO:0033502 cell galactose homeostasis ! parsing: GO:0035149 ! No parse for: GO:0035149 lumen formation, open tracheal system ! parsing: GO:0035150 ! No parse for: GO:0035150 regulation of tube size ! parsing: GO:0035151 ! No parse for: GO:0035151 regulation of tube size, open tracheal system ! parsing: GO:0035152 ! No parse for: GO:0035152 regulation of tube architecture, open tracheal system ! parsing: GO:0035158 ! No parse for: GO:0035158 regulation of tube diameter, open tracheal system ! parsing: GO:0035159 ! No parse for: GO:0035159 regulation of tube length, open tracheal system ! parsing: GO:0035160 ! No parse for: GO:0035160 maintenance of epithelial integrity, open tracheal system ! parsing: GO:0035296 ! No parse for: GO:0035296 regulation of tube diameter ! parsing: GO:0035297 ! No parse for: GO:0035297 regulation of Malpighian tubule diameter ! parsing: GO:0035298 ! No parse for: GO:0035298 regulation of Malpighian tubule size ! parsing: GO:0042049 ! No parse for: GO:0042049 cell acyl-CoA homeostasis ! parsing: GO:0042309 ! No parse for: GO:0042309 homoiothermy ! parsing: GO:0042310 ! No parse for: GO:0042310 vasoconstriction ! parsing: GO:0042311 ! No parse for: GO:0042311 vasodilation ! parsing: GO:0042391 ! parse: GO:0042391 using "regulation of membrane potential" => cdef(GO:0065007, [OBO_REL:regulates=PATO:0001462]) [-2] ! no existing xp def ! def: "Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane." ! PROPOSED: biological regulation that OBO_REL:regulates membrane potential [cdef(GO:0065007, [OBO_REL:regulates=PATO:0001462])] [Term] id: GO:0042391 ! regulation of membrane potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates PATO:0001462 ! membrane potential synonym: "biological regulation of membrane potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042391: 3.57 ! parsing: GO:0042592 ! No parse for: GO:0042592 homeostatic process ! parsing: GO:0042593 ! parse: GO:0042593 using "glucose homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17234]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an internal equilibrium of glucose within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of glucose [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17234])] [Term] id: GO:0042593 ! glucose homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:17234 ! glucose synonym: "Glucose chemical homeostasis" EXACT [OBOL:automatic] synonym: "Glucose homeostasis" EXACT [OBOL:automatic] synonym: "gluco-hexose chemical homeostasis" EXACT [OBOL:automatic] synonym: "gluco-hexose homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042593: 3.54 ! parsing: GO:0042632 ! parse: GO:0042632 using "cholesterol homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:16113]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an internal equilibrium of cholesterol within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of cholesterol [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:16113])] [Term] id: GO:0042632 ! cholesterol homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:16113 ! cholesterol synonym: "CHOLESTEROL chemical homeostasis" EXACT [OBOL:automatic] synonym: "CHOLESTEROL homeostasis" EXACT [OBOL:automatic] synonym: "Cholesterol chemical homeostasis" EXACT [OBOL:automatic] synonym: "Cholesterol homeostasis" EXACT [OBOL:automatic] synonym: "cholest-5-en-3 beta-ol chemical homeostasis" EXACT [OBOL:automatic] synonym: "cholest-5-en-3 beta-ol homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0042632: 3.6 ! parsing: GO:0043029 ! Already have xp for: GO:0043029 T cell homeostasis ! CURRENT : homeostasis of number of cells that OBO_REL:regulates_population_size_of T cell [cdef(GO:0048872, [OBO_REL:regulates_population_size_of=CL:0000084])] ! parsing: GO:0043114 ! No parse for: GO:0043114 regulation of vascular permeability ! parsing: GO:0043116 ! parse: GO:0043116 using "down regulation of vascular permeability" => cdef(GO:0043114, [OBO_REL:regulates=PATO:0000365]) [-2] ! no existing xp def ! def: "Any process that reduces the extent to which blood vessels can be pervaded by fluid." ! PROPOSED: regulation of vascular permeability that OBO_REL:regulates down [cdef(GO:0043114, [OBO_REL:regulates=PATO:0000365])] [Term] id: GO:0043116 ! negative regulation of vascular permeability intersection_of: GO:0043114 ! regulation of vascular permeability intersection_of: OBO_REL:regulates PATO:0000365 ! down synonym: "regulation of vascular permeability of down" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043116: 16.65 ! parsing: GO:0043117 ! parse: GO:0043117 using "up regulation of vascular permeability" => cdef(GO:0043114, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that increases the extent to which blood vessels can be pervaded by fluid." ! PROPOSED: regulation of vascular permeability that OBO_REL:regulates up [cdef(GO:0043114, [OBO_REL:regulates=PATO:0000370])] [Term] id: GO:0043117 ! positive regulation of vascular permeability intersection_of: GO:0043114 ! regulation of vascular permeability intersection_of: OBO_REL:regulates PATO:0000370 ! up synonym: "regulation of vascular permeability of up" EXACT [OBOL:automatic] ! seconds spent parsing GO:0043117: 13.42 ! parsing: GO:0043129 ! parse: GO:0043129 using "surfactant homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:35195]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an equilibrium of the surface-active lipoprotein mixture which coats the alveoli." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of surfactant [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:35195])] [Term] id: GO:0043129 ! surfactant homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:35195 ! surfactant ! seconds spent parsing GO:0043129: 3.58 ! parsing: GO:0045453 ! No parse for: GO:0045453 bone resorption ! parsing: GO:0045454 ! No parse for: GO:0045454 cell redox homeostasis ! parsing: GO:0045494 ! parse: GO:0045494 using "photoreceptor cell maintenance" => cdef(GO:0032501, [OBO_REL:regulates=cdef(GO:0030154, [OBO_REL:results_in_acquisition_of_features_of=CL:0000210])]) [-3] ! no existing xp def ! def: "Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light." ! PROPOSED: multicellular organismal process that OBO_REL:regulates cdef(GO:0030154, [OBO_REL:results_in_acquisition_of_features_of=CL:0000210]) [cdef(GO:0032501, [OBO_REL:regulates=cdef(GO:0030154, [OBO_REL:results_in_acquisition_of_features_of=CL:0000210])])] [Term] id: GO:0045494 ! photoreceptor cell maintenance intersection_of: GO:0032501 ! multicellular organismal process intersection_of: OBO_REL:regulates photoreceptor_cell_cell_cell_differentiation synonym: "photoreceptor cell cell maintenance" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045494: 7.9 ! parsing: GO:0045759 ! parse: GO:0045759 using "down regulation of action potential" => cdef(GO:0001508, [OBO_REL:regulates=PATO:0000365]) [-2] ! parse: GO:0045759 using "negative regulation of action potential" => cdef(GO:0065007, [OBO_REL:negatively_regulates=PATO:0001463]) [-2] ! no existing xp def ! def: "Any process that stops, prevents or reduces the frequency, rate or extent of action potential creation, propagation or termination." ! PROPOSED: biological regulation that OBO_REL:negatively_regulates action potential [cdef(GO:0065007, [OBO_REL:negatively_regulates=PATO:0001463])] [Term] id: GO:0045759 ! negative regulation of action potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:negatively_regulates PATO:0001463 ! action potential synonym: "negative biological regulation of action potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045759: 16.65 ! parsing: GO:0045760 ! parse: GO:0045760 using "positive regulation of action potential" => cdef(GO:0065007, [OBO_REL:positively_regulates=PATO:0001463]) [-2] ! parse: GO:0045760 using "up regulation of action potential" => cdef(GO:0001508, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that activates or increases the frequency, rate or extent of action potential creation, propagation or termination." ! PROPOSED: biological regulation that OBO_REL:positively_regulates action potential [cdef(GO:0065007, [OBO_REL:positively_regulates=PATO:0001463])] [Term] id: GO:0045760 ! positive regulation of action potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:positively_regulates PATO:0001463 ! action potential synonym: "positive biological regulation of action potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045760: 13.44 ! parsing: GO:0045771 ! parse: GO:0045771 using "down regulation of autophagic vacuole size" => cdef(GO:0016243, [OBO_REL:regulates=PATO:0000365]) [-2] ! parse: GO:0045771 using "negative regulation of autophagic vacuole size" => cdef(GO:0065007, [OBO_REL:negatively_regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=GO:0005776])]) [-3] ! no existing xp def ! def: "Any process that reduces autophagic vacuole size." ! PROPOSED: regulation of autophagic vacuole size that OBO_REL:regulates down [cdef(GO:0016243, [OBO_REL:regulates=PATO:0000365])] [Term] id: GO:0045771 ! negative regulation of autophagic vacuole size intersection_of: GO:0016243 ! regulation of autophagic vacuole size intersection_of: OBO_REL:regulates PATO:0000365 ! down synonym: "regulation of autophagic vacuole size of down" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045771: 16.61 ! parsing: GO:0045772 ! parse: GO:0045772 using "positive regulation of autophagic vacuole size" => cdef(GO:0065007, [OBO_REL:positively_regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=GO:0005776])]) [-3] ! parse: GO:0045772 using "up regulation of autophagic vacuole size" => cdef(GO:0016243, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that increases autophagic vacuole size." ! PROPOSED: regulation of autophagic vacuole size that OBO_REL:regulates up [cdef(GO:0016243, [OBO_REL:regulates=PATO:0000370])] [Term] id: GO:0045772 ! positive regulation of autophagic vacuole size intersection_of: GO:0016243 ! regulation of autophagic vacuole size intersection_of: OBO_REL:regulates PATO:0000370 ! up synonym: "regulation of autophagic vacuole size of up" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045772: 13.43 ! parsing: GO:0045792 ! parse: GO:0045792 using "down regulation of cell size" => cdef(GO:0008361, [OBO_REL:regulates=PATO:0000365]) [-2] ! parse: GO:0045792 using "negative regulation of cell size" => cdef(GO:0065007, [OBO_REL:negatively_regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! no existing xp def ! def: "Any process that reduces cell size." ! PROPOSED: regulation of cell size that OBO_REL:regulates down [cdef(GO:0008361, [OBO_REL:regulates=PATO:0000365])] [Term] id: GO:0045792 ! negative regulation of cell size intersection_of: GO:0008361 ! regulation of cell size intersection_of: OBO_REL:regulates PATO:0000365 ! down synonym: "cell size control of down" EXACT [OBOL:automatic] synonym: "regulation of cell size of down" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045792: 17.3 ! parsing: GO:0045793 ! parse: GO:0045793 using "positive regulation of cell size" => cdef(GO:0065007, [OBO_REL:positively_regulates=cdef(PATO:0000117, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! parse: GO:0045793 using "up regulation of cell size" => cdef(GO:0008361, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that increases cell size." ! PROPOSED: regulation of cell size that OBO_REL:regulates up [cdef(GO:0008361, [OBO_REL:regulates=PATO:0000370])] [Term] id: GO:0045793 ! positive regulation of cell size intersection_of: GO:0008361 ! regulation of cell size intersection_of: OBO_REL:regulates PATO:0000370 ! up synonym: "cell size control of up" EXACT [OBOL:automatic] synonym: "regulation of cell size of up" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045793: 13.43 ! parsing: GO:0045794 ! parse: GO:0045794 using "down regulation of cell volume" => cdef(GO:0006884, [OBO_REL:regulates=PATO:0000365]) [-2] ! parse: GO:0045794 using "negative regulation of cell volume" => cdef(GO:0065007, [OBO_REL:negatively_regulates=cdef(PATO:0000918, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! no existing xp def ! def: "Any process that decreases cell volume." ! PROPOSED: regulation of cell volume that OBO_REL:regulates down [cdef(GO:0006884, [OBO_REL:regulates=PATO:0000365])] [Term] id: GO:0045794 ! negative regulation of cell volume intersection_of: GO:0006884 ! regulation of cell volume intersection_of: OBO_REL:regulates PATO:0000365 ! down synonym: "regulation of cell volume of down" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045794: 17.38 ! parsing: GO:0045795 ! parse: GO:0045795 using "positive regulation of cell volume" => cdef(GO:0065007, [OBO_REL:positively_regulates=cdef(PATO:0000918, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! parse: GO:0045795 using "up regulation of cell volume" => cdef(GO:0006884, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that increases cell volume." ! PROPOSED: regulation of cell volume that OBO_REL:regulates up [cdef(GO:0006884, [OBO_REL:regulates=PATO:0000370])] [Term] id: GO:0045795 ! positive regulation of cell volume intersection_of: GO:0006884 ! regulation of cell volume intersection_of: OBO_REL:regulates PATO:0000370 ! up synonym: "regulation of cell volume of up" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045795: 13.56 ! parsing: GO:0045837 ! parse: GO:0045837 using "down regulation of membrane potential" => cdef(GO:0042391, [OBO_REL:regulates=PATO:0000365]) [-2] ! parse: GO:0045837 using "negative regulation of membrane potential" => cdef(GO:0065007, [OBO_REL:negatively_regulates=PATO:0001462]) [-2] ! no existing xp def ! def: "Any process that stops, prevents or reduces the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane." ! PROPOSED: biological regulation that OBO_REL:negatively_regulates membrane potential [cdef(GO:0065007, [OBO_REL:negatively_regulates=PATO:0001462])] [Term] id: GO:0045837 ! negative regulation of membrane potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:negatively_regulates PATO:0001462 ! membrane potential synonym: "negative biological regulation of membrane potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045837: 16.64 ! parsing: GO:0045838 ! parse: GO:0045838 using "positive regulation of membrane potential" => cdef(GO:0065007, [OBO_REL:positively_regulates=PATO:0001462]) [-2] ! parse: GO:0045838 using "up regulation of membrane potential" => cdef(GO:0042391, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that activates or increases the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane." ! PROPOSED: biological regulation that OBO_REL:positively_regulates membrane potential [cdef(GO:0065007, [OBO_REL:positively_regulates=PATO:0001462])] [Term] id: GO:0045838 ! positive regulation of membrane potential intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:positively_regulates PATO:0001462 ! membrane potential synonym: "positive biological regulation of membrane potential" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045838: 13.47 ! parsing: GO:0045851 ! parse: GO:0045851 using "pH reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=PATO:0001842]) [-2] ! no existing xp def ! def: "Any process that reduces the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion." ! PROPOSED: homeostatic process that OBO_REL:results_in_decrease_in acidity [cdef(GO:0042592, [OBO_REL:results_in_decrease_in=PATO:0001842])] [Term] id: GO:0045851 ! pH reduction intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_decrease_in PATO:0001842 ! acidity synonym: "reduction of acidity" EXACT [OBOL:automatic] synonym: "reduction of pH" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045851: 6.17 ! parsing: GO:0045852 ! parse: GO:0045852 using "pH elevation" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=PATO:0001842]) [-2] ! no existing xp def ! def: "Any process that increases the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion." ! PROPOSED: homeostatic process that OBO_REL:results_in_increase_in acidity [cdef(GO:0042592, [OBO_REL:results_in_increase_in=PATO:0001842])] [Term] id: GO:0045852 ! pH elevation intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_increase_in PATO:0001842 ! acidity synonym: "elevation of acidity" EXACT [OBOL:automatic] synonym: "elevation of pH" EXACT [OBOL:automatic] ! seconds spent parsing GO:0045852: 9.13 ! parsing: GO:0046665 ! No parse for: GO:0046665 amnioserosa maintenance ! parsing: GO:0046716 ! No parse for: GO:0046716 muscle maintenance ! parsing: GO:0046916 ! Already have xp for: GO:0046916 cellular transition metal ion homeostasis ! CURRENT : transition metal ion homeostasis that OBO_REL:part_of cellularization [cdef(GO:0055076, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0048388 ! No parse for: GO:0048388 endosomal lumen acidification ! parsing: GO:0048871 ! No parse for: GO:0048871 multicellular organismal homeostasis ! parsing: GO:0048872 ! No parse for: GO:0048872 homeostasis of number of cells ! parsing: GO:0048873 ! No parse for: GO:0048873 homeostasis of number of cells within a tissue ! parsing: GO:0048874 ! No parse for: GO:0048874 homeostasis of number of cells in a free-living population ! parsing: GO:0048875 ! No parse for: GO:0048875 chemical homeostasis within a tissue ! parsing: GO:0048876 ! parse: GO:0048876 using "retinal chemical homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17898]) [-2] ! no existing xp def ! def: "The processes involved in the maintenance of the internal equilibrium of the amount of a chemical at the level of the retina." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of retinal [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:17898])] [Term] id: GO:0048876 ! retinal chemical homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:17898 ! retinal synonym: "( 2 E, 4 E, 6 E, 8 E) -3, 7-dimethyl-9-( 2, 6, 6-trimethylcyclohex-1-en-1-yl) nona-2, 4, 6, 8-tetraenal chemical homeostasis" EXACT [OBOL:automatic] synonym: "( 2 E, 4 E, 6 E, 8 E) -3, 7-dimethyl-9-( 2, 6, 6-trimethylcyclohex-1-en-1-yl) nona-2, 4, 6, 8-tetraenal homeostasis" EXACT [OBOL:automatic] synonym: "Retinal chemical homeostasis" EXACT [OBOL:automatic] synonym: "Retinal homeostasis" EXACT [OBOL:automatic] synonym: "retinal homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0048876: 9.6 ! parsing: GO:0048877 ! No parse for: GO:0048877 homeostasis of number of retinal cells ! parsing: GO:0048878 ! No parse for: GO:0048878 chemical homeostasis ! parsing: GO:0050801 ! parse: GO:0050801 using "ion homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:24870]) [-2] ! no existing xp def ! def: "Any of the processes involved in the maintenance of an internal equilibrium of ions within an organism or cell." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of ion [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:24870])] [Term] id: GO:0050801 ! ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:24870 ! ion ! seconds spent parsing GO:0050801: 3.57 ! parsing: GO:0050803 ! No parse for: GO:0050803 regulation of synapse structure and activity ! parsing: GO:0050807 ! parse: GO:0050807 using "regulation of synapse structure" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000141, [OBO_REL:inheres_in=GO:0045202])]) [-3] ! no existing xp def ! def: "Any process that modulates the physical form of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell)." ! PROPOSED: biological regulation that OBO_REL:regulates cdef(PATO:0000141, [OBO_REL:inheres_in=GO:0045202]) [cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000141, [OBO_REL:inheres_in=GO:0045202])])] [Term] id: GO:0050807 ! regulation of synapse structure intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates synaptic_junction_structure synonym: "biological regulation of synapse structure" EXACT [OBOL:automatic] synonym: "biological regulation of synaptic junction structure" EXACT [OBOL:automatic] synonym: "regulation of synaptic junction structure" EXACT [OBOL:automatic] ! seconds spent parsing GO:0050807: 3.59 ! parsing: GO:0050828 ! No parse for: GO:0050828 regulation of liquid surface tension ! parsing: GO:0050880 ! No parse for: GO:0050880 regulation of blood vessel size ! parsing: GO:0050891 ! No parse for: GO:0050891 body fluid osmoregulation ! parsing: GO:0051209 ! No parse for: GO:0051209 release of sequestered calcium ion into cytosol ! parsing: GO:0051452 ! Already have xp for: GO:0051452 cellular pH reduction ! CURRENT : pH reduction that OBO_REL:part_of cellularization [cdef(GO:0045851, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0051453 ! parse: GO:0051453 using "cell pH regulation" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0001842, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! parse: GO:0051453 using "cellular pH regulation" => cdef(cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]), [OBO_REL:part_of=GO:0007349]) [-3] ! parse: GO:0051453 using "cellular pH regulation" => cdef(cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]), [OBO_REL:unfolds_in=CL:0000000]) [-3] ! parse: GO:0051453 using "cellular pH regulation" => cdef(cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]), [OBO_REL:unfolds_in=GO:0005623]) [-3] ! parse: GO:0051453 using "regulation of cell pH" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0001842, [OBO_REL:inheres_in=CL:0000000])]) [-3] ! parse: GO:0051453 using "regulation of intracellular pH" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0001842, [OBO_REL:inheres_in=GO:0005622])]) [-3] ! no existing xp def ! def: "Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion." ! PROPOSED: cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]) that OBO_REL:unfolds_in cell [cdef(cdef(GO:0065007, [OBO_REL:regulates=PATO:0001842]), [OBO_REL:unfolds_in=GO:0005623])] [Term] id: GO:0051453 ! regulation of cellular pH intersection_of: regulation_of_pH intersection_of: OBO_REL:unfolds_in GO:0005623 ! cell synonym: "cellular biological regulation of acidity" EXACT [OBOL:automatic] synonym: "cellular biological regulation of pH" EXACT [OBOL:automatic] synonym: "cellular regulation of acidity" EXACT [OBOL:automatic] synonym: "cellular regulation of pH" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051453: 77.01 ! parsing: GO:0051454 ! Already have xp for: GO:0051454 cellular pH elevation ! CURRENT : pH elevation that OBO_REL:part_of cellularization [cdef(GO:0045852, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0051480 ! Already have xp for: GO:0051480 cytosolic calcium ion homeostasis ! CURRENT : calcium ion homeostasis that OBO_REL:unfolds_in cytosol [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005829])] ! parsing: GO:0051481 ! parse: GO:0051481 using "cytosolic calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005829, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051481 using "cytosolic calcium ion concentration reduction" => cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005829]) [-4] ! parse: GO:0051481 using "reduction of cytosolic calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005829, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "Any process that decreases the concentration of calcium ions in the cytodol." ! PROPOSED: cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]) that OBO_REL:unfolds_in cytosol [cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005829])] [Term] id: GO:0051481 ! reduction of cytosolic calcium ion concentration intersection_of: reduction_of_calcium_ions_concentration intersection_of: OBO_REL:unfolds_in GO:0005829 ! cytosol synonym: "cytosolic reduction of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "cytosolic reduction of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "cytosolic reduction of calcium ion concentration" EXACT [OBOL:automatic] synonym: "cytosolic reduction of calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051481: 30.71 ! parsing: GO:0051482 ! Already have xp for: GO:0051482 elevation of cytosolic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) ! CURRENT : elevation of cytosolic calcium ion concentration that OBO_REL:part_of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [cdef(GO:0007204, [OBO_REL:part_of=GO:0007200])] ! parsing: GO:0051560 ! parse: GO:0051560 using "calcium ion homeostasis in mitochondria" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondria" => cdef(cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:29108]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondria" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22984]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondria" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondrion" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondrion" => cdef(cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:29108]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondrion" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22984]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "calcium ion homeostasis in mitochondrion" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "mitochondrial calcium ion concentration regulation" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051560 using "mitochondrial calcium ion concentration regulation" => cdef(cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005739]) [-4] ! parse: GO:0051560 using "mitochondrial calcium ion homeostasis" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051560 using "mitochondrial calcium ion homeostasis" => cdef(cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:29108]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "mitochondrial calcium ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22984]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "mitochondrial calcium ion homeostasis" => cdef(cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320]), [OBO_REL:unfolds_in=GO:0005739]) [-3] ! parse: GO:0051560 using "regulation of calcium ion concentration in mitochondria" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051560 using "regulation of calcium ion concentration in mitochondrion" => cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051560 using "regulation of mitochondrial calcium ion concentration" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of calcium ions within the cytoplasm of a cell or between mitochondria and their surroundings." ! PROPOSED: calcium ion homeostasis that OBO_REL:unfolds_in mitochondrion [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005739])] [Term] id: GO:0051560 ! mitochondrial calcium ion homeostasis intersection_of: GO:0055074 ! calcium ion homeostasis intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion synonym: "mitochondrial regulation of calcium ion concentration" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration in the mitochondria" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration in the mitochondrion" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration through the mitochondria" EXACT [OBOL:automatic] synonym: "regulation of calcium ion concentration through the mitochondrion" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051560: 71.6 ! parsing: GO:0051561 ! parse: GO:0051561 using "elevation of mitochondrial calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051561 using "mitochondrial calcium ion concentration elevation" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051561 using "mitochondrial calcium ion concentration elevation" => cdef(cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005739]) [-4] ! no existing xp def ! def: "Any process that increases the concentration of calcium ions in mitochondria." ! PROPOSED: cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]) that OBO_REL:unfolds_in mitochondrion [cdef(cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005739])] [Term] id: GO:0051561 ! elevation of mitochondrial calcium ion concentration intersection_of: elevation_of_calcium_ions_concentration intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion synonym: "mitochondrial calcium (2 +) concentration elevation" EXACT [OBOL:automatic] synonym: "mitochondrial calcium (II) cation concentration elevation" EXACT [OBOL:automatic] synonym: "mitochondrial calcium ions concentration elevation" EXACT [OBOL:automatic] synonym: "mitochondrial elevation of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "mitochondrial elevation of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "mitochondrial elevation of calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051561: 37.06 ! parsing: GO:0051562 ! parse: GO:0051562 using "mitochondrial calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051562 using "mitochondrial calcium ion concentration reduction" => cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005739]) [-4] ! parse: GO:0051562 using "reduction of mitochondrial calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005739, OBOL:towards=CHEBI:29108])]) [-4] ! no existing xp def ! def: "Any process that decreases the concentration of calcium ions in mitochondria." ! PROPOSED: cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]) that OBO_REL:unfolds_in mitochondrion [cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]), [OBO_REL:unfolds_in=GO:0005739])] [Term] id: GO:0051562 ! reduction of mitochondrial calcium ion concentration intersection_of: reduction_of_calcium_ions_concentration intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion synonym: "mitochondrial reduction of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "mitochondrial reduction of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "mitochondrial reduction of calcium ion concentration" EXACT [OBOL:automatic] synonym: "mitochondrial reduction of calcium ions concentration" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051562: 27.96 ! parsing: GO:0051563 ! Already have xp for: GO:0051563 smooth endoplasmic reticulum calcium ion homeostasis ! CURRENT : calcium ion homeostasis that OBO_REL:unfolds_in smooth endoplasmic reticulum [cdef(GO:0055074, [OBO_REL:unfolds_in=GO:0005790])] ! parsing: GO:0051564 ! parse: GO:0051564 using "elevation of smooth endoplasmic reticulum calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051564 using "smooth endoplasmic reticulum calcium ion concentration elevation" => cdef(GO:0032470, [OBO_REL:has_quality=PATO:0000701]) [-2] ! parse: GO:0051564 using "smooth endoplasmic reticulum calcium ion concentration elevation" => cdef(GO:0032470, [OBO_REL:regulates=PATO:0000701]) [-2] ! parse: GO:0051564 using "smooth endoplasmic reticulum calcium ion concentration elevation" => cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051564 using "smooth endoplasmic reticulum calcium ion concentration elevation" => cdef(cdef(GO:0042592, [OBO_REL:results_in_increase_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]), [OBO_REL:has_quality=PATO:0000701]) [-5] ! no existing xp def ! def: "Any process that increases the concentration of calcium ions in the smooth endoplasmic reticulum." ! PROPOSED: elevation of endoplasmic reticulum calcium ion concentration that OBO_REL:regulates smooth [cdef(GO:0032470, [OBO_REL:regulates=PATO:0000701])] [Term] id: GO:0051564 ! elevation of smooth endoplasmic reticulum calcium ion concentration intersection_of: GO:0032470 ! elevation of endoplasmic reticulum calcium ion concentration intersection_of: OBO_REL:regulates PATO:0000701 ! smooth synonym: "elevation of calcium ion concentration in endoplasmic reticulum of smooth" EXACT [OBOL:automatic] synonym: "elevation of endoplasmic reticulum calcium ion concentration of smooth" EXACT [OBOL:automatic] synonym: "endoplasmic reticulum calcium ion concentration elevation of smooth" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051564: 20.8 ! parsing: GO:0051565 ! parse: GO:0051565 using "reduction of smooth ER calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051565 using "reduction of smooth endoplasmic reticulum calcium ion concentration" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051565 using "smooth ER calcium ion concentration reduction" => cdef(GO:0032471, [OBO_REL:has_quality=PATO:0000701]) [-2] ! parse: GO:0051565 using "smooth ER calcium ion concentration reduction" => cdef(GO:0032471, [OBO_REL:regulates=PATO:0000701]) [-2] ! parse: GO:0051565 using "smooth ER calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051565 using "smooth ER calcium ion concentration reduction" => cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]), [OBO_REL:has_quality=PATO:0000701]) [-5] ! parse: GO:0051565 using "smooth endoplasmic reticulum calcium ion concentration reduction" => cdef(GO:0032471, [OBO_REL:has_quality=PATO:0000701]) [-2] ! parse: GO:0051565 using "smooth endoplasmic reticulum calcium ion concentration reduction" => cdef(GO:0032471, [OBO_REL:regulates=PATO:0000701]) [-2] ! parse: GO:0051565 using "smooth endoplasmic reticulum calcium ion concentration reduction" => cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005790, OBOL:towards=CHEBI:29108])]) [-4] ! parse: GO:0051565 using "smooth endoplasmic reticulum calcium ion concentration reduction" => cdef(cdef(GO:0042592, [OBO_REL:results_in_decrease_in=cdef(PATO:0000033, [OBO_REL:inheres_in=GO:0005783, OBOL:towards=CHEBI:29108])]), [OBO_REL:has_quality=PATO:0000701]) [-5] ! no existing xp def ! def: "Any process that decreases the concentration of calcium ions in the smooth endoplasmic reticulum." ! PROPOSED: reduction of endoplasmic reticulum calcium ion concentration that OBO_REL:regulates smooth [cdef(GO:0032471, [OBO_REL:regulates=PATO:0000701])] [Term] id: GO:0051565 ! reduction of smooth endoplasmic reticulum calcium ion concentration intersection_of: GO:0032471 ! reduction of endoplasmic reticulum calcium ion concentration intersection_of: OBO_REL:regulates PATO:0000701 ! smooth synonym: "ER calcium ion concentration reduction of smooth" EXACT [OBOL:automatic] synonym: "endoplasmic reticulum calcium ion concentration reduction of smooth" EXACT [OBOL:automatic] synonym: "reduction of ER calcium ion concentration of smooth" EXACT [OBOL:automatic] synonym: "reduction of calcium ion concentration in ER of smooth" EXACT [OBOL:automatic] synonym: "reduction of calcium ion concentration in endoplasmic reticulum of smooth" EXACT [OBOL:automatic] synonym: "reduction of endoplasmic reticulum calcium ion concentration of smooth" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051565: 28.65 ! parsing: GO:0051823 ! No parse for: GO:0051823 regulation of synapse structural plasticity ! parsing: GO:0051826 ! parse: GO:0051826 using "down regulation of synapse structural plasticity" => cdef(GO:0051823, [OBO_REL:regulates=PATO:0000365]) [-2] ! no existing xp def ! def: "Any process that stops, prevents or reduces the frequency, rate or extent of synapse structural plasticity." ! PROPOSED: regulation of synapse structural plasticity that OBO_REL:regulates down [cdef(GO:0051823, [OBO_REL:regulates=PATO:0000365])] [Term] id: GO:0051826 ! negative regulation of synapse structural plasticity intersection_of: GO:0051823 ! regulation of synapse structural plasticity intersection_of: OBO_REL:regulates PATO:0000365 ! down synonym: "regulation of synapse structural plasticity of down" EXACT [OBOL:automatic] synonym: "regulation of synaptic structural plasticity of down" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051826: 16.63 ! parsing: GO:0051835 ! parse: GO:0051835 using "up regulation of synapse structural plasticity" => cdef(GO:0051823, [OBO_REL:regulates=PATO:0000370]) [-2] ! no existing xp def ! def: "Any process that activates, maintains or increases the frequency, rate or extent of synaptic structural plasticity." ! PROPOSED: regulation of synapse structural plasticity that OBO_REL:regulates up [cdef(GO:0051823, [OBO_REL:regulates=PATO:0000370])] [Term] id: GO:0051835 ! positive regulation of synapse structural plasticity intersection_of: GO:0051823 ! regulation of synapse structural plasticity intersection_of: OBO_REL:regulates PATO:0000370 ! up synonym: "regulation of synapse structural plasticity of up" EXACT [OBOL:automatic] synonym: "regulation of synaptic structural plasticity of up" EXACT [OBOL:automatic] ! seconds spent parsing GO:0051835: 13.44 ! parsing: GO:0051881 ! No parse for: GO:0051881 regulation of mitochondrial membrane potential ! parsing: GO:0051882 ! parse: GO:0051882 using "mitochondria depolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0005739])]) [-3] ! parse: GO:0051882 using "mitochondrial membrane depolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0031966])]) [-3] ! parse: GO:0051882 using "mitochondrial membrane depolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=cdef(GO:0016020, [OBO_REL:part_of=GO:0005739])])]) [-4] ! parse: GO:0051882 using "mitochondrial membrane depolarization" => cdef(GO:0051899, [OBO_REL:unfolds_in=GO:0005739]) [-2] ! parse: GO:0051882 using "mitochondrial membrane depolarization" => cdef(cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])]), [OBO_REL:unfolds_in=GO:0005739]) [-4] ! parse: GO:0051882 using "mitochondrion depolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0005739])]) [-3] ! no existing xp def ! def: "The process in which the membrane potential of the mitochondria changes in the depolarizing direction from the resting potential, from negative to positive." ! PROPOSED: membrane depolarization that OBO_REL:unfolds_in mitochondrion [cdef(GO:0051899, [OBO_REL:unfolds_in=GO:0005739])] [Term] id: GO:0051882 ! mitochondrial depolarization intersection_of: GO:0051899 ! membrane depolarization intersection_of: OBO_REL:unfolds_in GO:0005739 ! mitochondrion ! seconds spent parsing GO:0051882: 110.29 ! parsing: GO:0051899 ! parse: GO:0051899 using "membrane depolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])]) [-3] ! no existing xp def ! def: "The process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential." ! PROPOSED: biological_process that OBO_REL:results_in_change_to cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020]) [cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])])] [Term] id: GO:0051899 ! membrane depolarization intersection_of: GO:0008150 ! biological_process intersection_of: OBO_REL:results_in_change_to cdef('PATO:0001660', ['OBO_REL:inheres_in'='GO:0016020']) ! seconds spent parsing GO:0051899: 0.02 ! parsing: GO:0055061 ! No parse for: GO:0055061 di-, tri-valent inorganic anion homeostasis ! parsing: GO:0055062 ! parse: GO:0055062 using "phosphate ion homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:35780]) [-2] ! parse: GO:0055062 using "phosphate ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:18367]) [-2] ! parse: GO:0055062 using "phosphate ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26020]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of phosphate ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of phosphate [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26020])] [Term] id: GO:0055062 ! phosphate ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:26020 ! phosphate synonym: "phosphates ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055062: 6.37 ! parsing: GO:0055063 ! parse: GO:0055063 using "sulfate ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:16189]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of sulfate ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of sulfate [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:16189])] [Term] id: GO:0055063 ! sulfate ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:16189 ! sulfate synonym: "Sulfate ion homeostasis" EXACT [OBOL:automatic] synonym: "tetraoxidosulfate (2-) ion homeostasis" EXACT [OBOL:automatic] synonym: "tetraoxosulfate (2-) ion homeostasis" EXACT [OBOL:automatic] synonym: "tetraoxosulfate (VI) ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055063: 4.43 ! parsing: GO:0055064 ! parse: GO:0055064 using "chloride ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:17996]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of chloride ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of chloride [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:17996])] [Term] id: GO:0055064 ! chloride ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:17996 ! chloride synonym: "Chloride ion homeostasis" EXACT [OBOL:automatic] synonym: "chloride (1-) ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055064: 4.41 ! parsing: GO:0055065 ! parse: GO:0055065 using "metal ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:33521]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of metal ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of metal [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:33521])] [Term] id: GO:0055065 ! metal ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:33521 ! metal synonym: "metals ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055065: 4.77 ! parsing: GO:0055066 ! No parse for: GO:0055066 di-, tri-valent inorganic cation homeostasis ! parsing: GO:0055067 ! No parse for: GO:0055067 monovalent inorganic cation homeostasis ! parsing: GO:0055068 ! parse: GO:0055068 using "cobalt ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:27638]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of cobalt ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of cobalt [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:27638])] [Term] id: GO:0055068 ! cobalt ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:27638 ! cobalt synonym: "Cobalt ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055068: 4.7 ! parsing: GO:0055069 ! parse: GO:0055069 using "zinc ion homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:27365]) [-2] ! parse: GO:0055069 using "zinc ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:27363]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of zinc ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of zinc [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:27363])] [Term] id: GO:0055069 ! zinc ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:27363 ! zinc ! seconds spent parsing GO:0055069: 5.17 ! parsing: GO:0055070 ! parse: GO:0055070 using "copper ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:28694]) [-2] ! parse: GO:0055070 using "copper ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:30052]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of copper ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of copper(0) [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:30052])] [Term] id: GO:0055070 ! copper ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:30052 ! copper(0) synonym: "copper (0) ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055070: 6.21 ! parsing: GO:0055071 ! parse: GO:0055071 using "manganese ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:18291]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of manganese ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of manganese [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:18291])] [Term] id: GO:0055071 ! manganese ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:18291 ! manganese synonym: "Manganese ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055071: 4.78 ! parsing: GO:0055072 ! parse: GO:0055072 using "iron ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:18248]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of iron ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of iron [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:18248])] [Term] id: GO:0055072 ! iron ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:18248 ! iron synonym: "Iron ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055072: 4.77 ! parsing: GO:0055073 ! parse: GO:0055073 using "cadmium homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:22977]) [-2] ! parse: GO:0055073 using "cadmium ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22977]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of cadmium ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of cadmium [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22977])] [Term] id: GO:0055073 ! cadmium ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:22977 ! cadmium ! seconds spent parsing GO:0055073: 8.63 ! parsing: GO:0055074 ! parse: GO:0055074 using "calcium ion homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:29108]) [-2] ! parse: GO:0055074 using "calcium ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:22984]) [-2] ! parse: GO:0055074 using "calcium ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320]) [-2] ! parse: GO:0055074 using "regulation of calcium ion concentration" => cdef(GO:0065007, [OBO_REL:regulates=cdef(PATO:0000033, [OBOL:towards=CHEBI:29108])]) [-3] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of calcium ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of calcium(0) [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:29320])] [Term] id: GO:0055074 ! calcium ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:29320 ! calcium(0) synonym: "calcium (0) ion homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055074: 3.73 ! parsing: GO:0055075 ! parse: GO:0055075 using "potassium ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26216]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of potassium ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of potassium [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26216])] [Term] id: GO:0055075 ! potassium ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:26216 ! potassium ! seconds spent parsing GO:0055075: 4.77 ! parsing: GO:0055076 ! No parse for: GO:0055076 transition metal ion homeostasis ! parsing: GO:0055078 ! parse: GO:0055078 using "sodium ion homeostasis" => cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26708]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of sodium ions." ! PROPOSED: ion homeostasis that OBO_REL:regulates_levels_of sodium [cdef(GO:0050801, [OBO_REL:regulates_levels_of=CHEBI:26708])] [Term] id: GO:0055078 ! sodium ion homeostasis intersection_of: GO:0050801 ! ion homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:26708 ! sodium ! seconds spent parsing GO:0055078: 4.76 ! parsing: GO:0055079 ! No parse for: GO:0055079 aluminum ion homeostasis ! parsing: GO:0055080 ! parse: GO:0055080 using "cation homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:36916]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of cations." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of cation [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:36916])] [Term] id: GO:0055080 ! cation homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:36916 ! cation ! seconds spent parsing GO:0055080: 3.84 ! parsing: GO:0055081 ! parse: GO:0055081 using "anion homeostasis" => cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:22563]) [-2] ! no existing xp def ! def: "The regulation of the levels, transport, and metabolism of anions." ! PROPOSED: chemical homeostasis that OBO_REL:regulates_levels_of anion [cdef(GO:0048878, [OBO_REL:regulates_levels_of=CHEBI:22563])] [Term] id: GO:0055081 ! anion homeostasis intersection_of: GO:0048878 ! chemical homeostasis intersection_of: OBO_REL:regulates_levels_of CHEBI:22563 ! anion synonym: "anions chemical homeostasis" EXACT [OBOL:automatic] synonym: "anions homeostasis" EXACT [OBOL:automatic] ! seconds spent parsing GO:0055081: 3.82 ! parsing: GO:0055082 ! Already have xp for: GO:0055082 cellular chemical homeostasis ! CURRENT : chemical homeostasis that OBO_REL:part_of cellularization [cdef(GO:0048878, [OBO_REL:part_of=GO:0007349])] ! parsing: GO:0055083 ! No parse for: GO:0055083 monovalent inorganic anion homeostasis ! parsing: GO:0060025 ! No parse for: GO:0060025 regulation of synaptic activity ! parsing: GO:0060075 ! No parse for: GO:0060075 regulation of resting membrane potential ! parsing: GO:0060078 ! No parse for: GO:0060078 regulation of postsynaptic membrane potential ! parsing: GO:0060079 ! No parse for: GO:0060079 regulation of excitatory postsynaptic membrane potential ! parsing: GO:0060080 ! No parse for: GO:0060080 regulation of inhibitory postsynaptic membrane potential ! parsing: GO:0060081 ! parse: GO:0060081 using "membrane hyperpolarization" => cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])]) [-3] ! no existing xp def ! def: "The process in which membrane potential changes in the hyperpolarizing direction from the resting potential, usually from negative to more negative." ! PROPOSED: biological_process that OBO_REL:results_in_change_to cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020]) [cdef(GO:0008150, [OBO_REL:results_in_change_to=cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])])] [Term] id: GO:0060081 ! membrane hyperpolarization intersection_of: GO:0008150 ! biological_process intersection_of: OBO_REL:results_in_change_to cdef('PATO:0001660', ['OBO_REL:inheres_in'='GO:0016020']) synonym: "membrane depolarization" EXACT [OBOL:automatic] ! seconds spent parsing GO:0060081: 4.03 ! parsing: GO:0060086 ! No parse for: GO:0060086 circadian thermoregulation ! anonymous primitive or inner classes created as by-products: [Term] id: photoreceptor_cell_cell_cell_differentiation intersection_of: GO:0030154 ! cell differentiation intersection_of: OBO_REL:results_in_acquisition_of_features_of CL:0000210 ! photoreceptor cell synonym: "photoreceptor cell cell cell differentiation" EXACT [OBOL:automatic] synonym: "photoreceptor cell cell differentiation" EXACT [OBOL:automatic] [Term] id: reduction_of_calcium_ions_concentration intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_decrease_in calcium_ions_concentration synonym: "calcium ion concentration reduction" EXACT [OBOL:automatic] synonym: "reduction of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "reduction of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "reduction of calcium ion concentration" EXACT [OBOL:automatic] synonym: "reduction of calcium ions concentration" EXACT [OBOL:automatic] [Term] id: elevation_of_calcium_ions_concentration intersection_of: GO:0042592 ! homeostatic process intersection_of: OBO_REL:results_in_increase_in calcium_ions_concentration synonym: "calcium (2 +) concentration elevation" EXACT [OBOL:automatic] synonym: "calcium (II) cation concentration elevation" EXACT [OBOL:automatic] synonym: "calcium ion concentration elevation" EXACT [OBOL:automatic] synonym: "calcium ions concentration elevation" EXACT [OBOL:automatic] synonym: "elevation of calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "elevation of calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "elevation of calcium ions concentration" EXACT [OBOL:automatic] [Term] id: regulation_of_pH intersection_of: GO:0065007 ! biological regulation intersection_of: OBO_REL:regulates PATO:0001842 ! acidity synonym: "biological regulation of acidity" EXACT [OBOL:automatic] synonym: "biological regulation of pH" EXACT [OBOL:automatic] synonym: "pH regulation" EXACT [OBOL:automatic] synonym: "regulation of acidity" EXACT [OBOL:automatic] synonym: "regulation of pH" EXACT [OBOL:automatic] [Term] id: calcium_ions_concentration intersection_of: PATO:0000033 ! concentration intersection_of: OBOL:towards CHEBI:29108 ! calcium(2+) synonym: "calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "calcium ion concentration" EXACT [OBOL:automatic] synonym: "calcium ions concentration" EXACT [OBOL:automatic] [Term] id: ER_calcium_ion_concentration intersection_of: PATO:0000033 ! concentration intersection_of: OBO_REL:inheres_in GO:0005783 ! endoplasmic reticulum intersection_of: OBOL:towards CHEBI:29108 ! calcium(2+) synonym: "ER calcium (2 +) concentration" EXACT [OBOL:automatic] synonym: "ER calcium (II) cation concentration" EXACT [OBOL:automatic] synonym: "ER calcium ion concentration" EXACT [OBOL:automatic] synonym: "ER calcium ions concentration" EXACT [OBOL:automatic] synonym: "endoplasmic reticulum calcium ion concentration" EXACT [OBOL:automatic] [Term] id: cell_size intersection_of: PATO:0000117 ! size intersection_of: OBO_REL:inheres_in CL:0000000 ! cell synonym: "cell cell size" EXACT [OBOL:automatic] synonym: "cell size" EXACT [OBOL:automatic] [Term] id: autophagic_vacuole_size intersection_of: PATO:0000117 ! size intersection_of: OBO_REL:inheres_in GO:0005776 ! autophagic vacuole synonym: "autophagic vacuole size" EXACT [OBOL:automatic] synonym: "autophagosome size" EXACT [OBOL:automatic] [Term] id: synaptic_junction_structure intersection_of: PATO:0000141 ! structure intersection_of: OBO_REL:inheres_in GO:0045202 ! synapse synonym: "synapse structure" EXACT [OBOL:automatic] synonym: "synaptic junction structure" EXACT [OBOL:automatic] [Term] id: cell_volume intersection_of: PATO:0000918 ! volume intersection_of: OBO_REL:inheres_in CL:0000000 ! cell synonym: "cell cell volume" EXACT [OBOL:automatic] synonym: "cell volume" EXACT [OBOL:automatic] ! Could not write anon class: cdef(PATO:0001660, [OBO_REL:inheres_in=GO:0016020])