GO Monthly Release Notes for June 2007
========================
Generated on Thu Jul 19 07:04:58 2007
Files used:
gene_ontology.obo
OLD: version 4.247, 30:05:2007 19:30
NEW: version 4.268, 29:06:2007 19:30
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (83 new terms)
GO:0014073 GO:0008150 EF D response to tropane
GO:0014074 GO:0008150 EF D response to purine
GO:0033223 GO:0006810 MAH D 2-aminoethylphosphonate transport
GO:0033227 GO:0006810 MAH D dsRNA transport
GO:0033228 GO:0006810 MAH D 1723526 cysteine export
GO:0033231 GO:0006810 MAH D carbohydrate export
GO:0033233 GO:0006464 MAH D regulation of protein sumoylation
GO:0050789
GO:0033234 GO:0006464 MAH D negative regulation of protein sumoylation
GO:0050789
GO:0033235 GO:0006464 MAH D positive regulation of protein sumoylation
GO:0050789
GO:0033238 GO:0008152 MAH D regulation of amine metabolic process
GO:0050789
GO:0033239 GO:0008152 MAH D negative regulation of amine metabolic process
GO:0050789
GO:0033240 GO:0008152 MAH D positive regulation of amine metabolic process
GO:0050789
GO:0033241 GO:0009056 MAH D regulation of amine catabolic process
GO:0050789
GO:0033242 GO:0009056 MAH D negative regulation of amine catabolic process
GO:0050789
GO:0033243 GO:0009056 MAH D positive regulation of amine catabolic process
GO:0050789
GO:0033244 GO:0008152 MAH D regulation of penicillin metabolic process
GO:0050789
GO:0033245 GO:0008152 MAH D negative regulation of penicillin metabolic process
GO:0050789
GO:0033246 GO:0008152 MAH D positive regulation of penicillin metabolic process
GO:0050789
GO:0033247 GO:0009056 MAH D regulation of penicillin catabolic process
GO:0050789
GO:0033248 GO:0009056 MAH D negative regulation of penicillin catabolic process
GO:0050789
GO:0033249 GO:0009056 MAH D positive regulation of penicillin catabolic process
GO:0050789
GO:0033252 GO:0008150 MAH D regulation of beta-lactamase activity
GO:0033253 GO:0008150 MAH D regulation of penicillinase activity
GO:0033258 GO:0006259 MAH D plastid DNA metabolic process
GO:0006996
GO:0033259 GO:0006259 MAH D plastid DNA replication
GO:0006996
GO:0033260 GO:0006259 MAH D DNA replication during S phase
GO:0007049
GO:0033261 GO:0007049 MAH D regulation of progression through S phase
GO:0050789
GO:0033262 GO:0006259 MAH D regulation of DNA replication during S phase
GO:0007049
GO:0050789
GO:0033271 GO:0006810 MAH D myo-inositol phosphate transport
GO:0033272 GO:0006810 MAH D myo-inositol hexakisphosphate transport
GO:0033273 GO:0007154 MAH D response to vitamin
GO:0009605
GO:0033274 GO:0007154 MAH D response to vitamin B2
GO:0009605
GO:0033275 GO:0006810 MAH D actin-myosin filament sliding
GO:0007010
GO:0033277 GO:0007049 MAH D abortive mitotic cell cycle
GO:0033278 GO:0007275 MAH D cell proliferation in midbrain
GO:0008283
GO:0033280 GO:0007154 MAH D response to vitamin D
GO:0009605
GO:0033292 GO:0016043 MAH D T-tubule organization and biogenesis
GO:0030154
GO:0033298 GO:0006996 MAH D contractile vacuole organization and biogenesis
GO:0033299 GO:0016043 MAH D secretion of lysosomal enzymes
GO:0033301 GO:0007049 MAH D cell cycle comprising mitosis without cytokinesis
GO:0033302 GO:0005975 MAH D quercetin O-glucoside metabolic process
GO:0033303 GO:0005975 MAH D quercetin O-glucoside biosynthetic process
GO:0009058
GO:0033304 GO:0019748 MAH D chlorophyll a metabolic process
GO:0033305 GO:0009058 MAH D chlorophyll a biosynthetic process
GO:0019748
GO:0033306 GO:0008152 MAH D phytol metabolic process
GO:0033307 GO:0008152 MAH D phytol salvage
GO:0033308 GO:0006810 MAH D hydroxyectoine transport
GO:0033310 GO:0009056 MAH D chlorophyll a catabolic process
GO:0019748
GO:0033311 GO:0009058 MAH D chlorophyll a biosynthetic process via phytyl-PP
GO:0019748
GO:0033312 GO:0009058 MAH D chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a
GO:0019748
GO:0033313 GO:0007049 MAH D meiotic cell cycle checkpoint
GO:0050789
GO:0033314 GO:0006259 MAH D mitotic cell cycle DNA replication checkpoint
GO:0007049
GO:0050789
GO:0033315 GO:0006259 MAH D meiotic cell cycle DNA replication checkpoint
GO:0007049
GO:0050789
GO:0033316 GO:0007049 MAH D meiotic spindle checkpoint
GO:0050789
GO:0033317 GO:0009058 MAH D pantothenate biosynthetic process from valine
GO:0033318 GO:0009058 MAH D pantothenate biosynthetic process from 2-oxypantoyl lactone
GO:0033319 GO:0005975 MAH D UDP-D-xylose metabolic process
GO:0006139
GO:0033320 GO:0005975 MAH D UDP-D-xylose biosynthetic process
GO:0006139
GO:0033321 GO:0006519 MAH D homomethionine metabolic process
GO:0033322 GO:0006519 MAH D homomethionine biosynthetic process
GO:0033323 GO:0006519 MAH D choline biosynthetic process via CDP-choline
GO:0009058
GO:0033324 GO:0006519 MAH D choline biosynthetic process via N-monomethylethanolamine
GO:0009058
GO:0033325 GO:0006519 MAH D choline biosynthetic process via phosphoryl-ethanolamine
GO:0009058
GO:0060135 GO:0000003 AI D maternal process involved in pregnancy
GO:0060136 GO:0000003 AI D embryonic process involved in female pregnancy
GO:0009790
GO:0060137 GO:0000003 AI D maternal process involved in parturition
GO:0060138 GO:0000003 AI D fetal process involved in parturition
GO:0009790
GO:0060139 GO:0000003 AI D positive regulation of apoptosis by virus
GO:0008219
GO:0016032
GO:0044403
GO:0050789
GO:0060140 GO:0000003 AI D syncytium formation by plasma membrane fusion of virally targeted cells
GO:0016032
GO:0016043
GO:0044403
GO:0060141 GO:0000003 AI D positive regulation of cell fusion by virus
GO:0016032
GO:0016043
GO:0044403
GO:0050789
GO:0060142 GO:0016043 AI D regulation of syncytium formation by plasma membrane fusion
GO:0050789
GO:0060143 GO:0016043 AI D positive regulation of syncytium formation by plasma membrane fusion
GO:0050789
GO:0060144 GO:0009607 AI D host cellular processes involved in virus induced gene silencing
GO:0044403
GO:0060145 GO:0006139 AI D viral gene silencing in virus induced gene silencing
GO:0009607
GO:0040029
GO:0044403
GO:0060146 GO:0006139 AI D host gene silencing in virus induced gene silencing
GO:0009607
GO:0040029
GO:0044403
GO:0060147 GO:0006139 AI D regulation of posttranscriptional gene silencing
GO:0040029
GO:0060148 GO:0006139 AI D positive regulation of posttranscriptional gene silencing
GO:0040029
GO:0060149 GO:0006139 AI D negative regulation of posttranscriptional gene silencing
GO:0040029
GO:0060150 GO:0006139 AI D viral triggering of virus induced gene silencing
GO:0009607
GO:0040029
GO:0044403
GO:0060151 GO:0016043 AI D peroxisome localization
GO:0060152 GO:0007010 AI D microtubule-based peroxisome localization
GO:0060153 GO:0000003 AI D viral process regulating host cell cycle
GO:0007049
GO:0016032
GO:0044403
GO:0050789
GO:0060154 GO:0000003 AI D cellular process regulating host cell cycle in response to virus
GO:0007049
GO:0009607
GO:0016032
GO:0044403
GO:0050789
Term name changes in biological_process ontology
GO:0006267: pre-replicative complex formation --> pre-replicative complex assembly
GO:0006294: nucleotide-excision repair, preincision complex formation --> nucleotide-excision repair, preincision complex assembly
GO:0006324: S-phase regulated histone modification --> S-phase-specific histone modification
GO:0006624: vacuolar protein processing or maturation --> vacuolar protein processing
GO:0007093: mitotic checkpoint --> mitotic cell cycle checkpoint
GO:0007094: mitotic spindle checkpoint --> mitotic cell cycle spindle assembly checkpoint
GO:0007095: mitotic G2 checkpoint --> mitotic cell cycle G2/M transition DNA damage checkpoint
GO:0007172: signal complex formation --> signal complex assembly
GO:0007293: egg chamber formation (sensu Insecta) --> germarium-derived egg chamber formation
GO:0007294: oocyte fate determination (sensu Insecta) --> germarium-derived oocyte fate determination
GO:0007295: egg chamber growth (sensu Insecta) --> growth of a germarium-derived egg chamber
GO:0007300: nurse cell to oocyte transport (sensu Insecta) --> ovarian nurse cell to oocyte transport
GO:0007304: eggshell formation (sensu Insecta) --> chorion-containing eggshell formation
GO:0007305: vitelline membrane formation (sensu Insecta) --> vitelline membrane formation in chorion-containing eggshell
GO:0007306: insect chorion formation --> eggshell chorion formation
GO:0007307: chorion gene amplification --> eggshell chorion gene amplification
GO:0007565: pregnancy --> female pregnancy
GO:0009249: protein-lipoylation --> protein lipoylation
GO:0010264: phytate biosynthetic process --> myo-inositol hexakisphosphate biosynthetic process
GO:0017055: negative regulation of transcriptional preinitiation complex formation --> negative regulation of transcriptional preinitiation complex assembly
GO:0018060: N-terminal peptidyl-cysteine acid deamination --> N-terminal peptidyl-cysteine deamination
GO:0030381: eggshell pattern formation (sensu Insecta) --> chorion-containing eggshell pattern formation
GO:0030706: oocyte differentiation (sensu Insecta) --> germarium-derived oocyte differentiation
GO:0030708: female germ-line cyst encapsulation (sensu Insecta) --> germarium-derived female germ-line cyst encapsulation
GO:0030715: oocyte growth (sensu Insecta) --> oocyte growth in germarium-derived egg chamber
GO:0030720: oocyte localization during oogenesis --> oocyte localization during germarium-derived egg chamber formation
GO:0030727: female germ-line cyst formation (sensu Insecta) --> germarium-derived female germ-line cyst formation
GO:0031578: spindle orientation checkpoint --> mitotic cell cycle spindle orientation checkpoint
GO:0045898: regulation of transcriptional preinitiation complex formation --> regulation of transcriptional preinitiation complex assembly
GO:0045899: positive regulation of transcriptional preinitiation complex formation --> positive regulation of transcriptional preinitiation complex assembly
GO:0045977: positive regulation of mitotic cell cycle, embryonic --> positive regulation of progression through embryonic mitotic cell cycle
GO:0048142: cystoblast division (sensu Insecta) --> germarium-derived cystoblast division
GO:0048158: oogonium stage, oogenesis (sensu Mammalia) --> oogonium stage, oogenesis
GO:0048160: primary follicle stage, oogenesis (sensu Mammalia) --> primary follicle stage, oogenesis
GO:0048161: double layer follicle stage, oogenesis (sensu Mammalia) --> double layer follicle stage, oogenesis
GO:0048162: multi-layer follicle stage, oogenesis (sensu Mammalia) --> multi-layer follicle stage, oogenesis
GO:0048163: scattered antral spaces stage, oogenesis (sensu Mammalia) --> scattered antral spaces stage, oogenesis
GO:0048164: distinct antral spaces stage, oogenesis (sensu Mammalia) --> distinct antral spaces stage, oogenesis
GO:0048165: fused antrum stage, oogenesis (sensu Mammalia) --> fused antrum stage, oogenesis
GO:0048166: mature follicle stage, oogenesis (sensu Mammalia) --> mature follicle stage, oogenesis
GO:0051123: transcriptional preinitiation complex formation --> transcriptional preinitiation complex assembly
New definitions for biological_process ontology terms (20 new definitions)
GO:0006324, S-phase-specific histone modification
GO:0006465, signal peptide processing
GO:0006475, internal protein amino acid acetylation
GO:0006482, protein amino acid demethylation
GO:0006609, mRNA-binding (hnRNP) protein import into nucleus
GO:0006624, vacuolar protein processing
GO:0006642, triacylglycerol mobilization
GO:0006753, nucleoside phosphate metabolic process
GO:0009249, protein lipoylation
GO:0018020, peptidyl-glutamic acid methylation
GO:0018073, protein amino acid bromination
GO:0018246, protein-coenzyme A linkage
GO:0018309, protein-FMN linkage
GO:0018364, peptidyl-glutamine methylation
GO:0018393, internal peptidyl-lysine acetylation
GO:0019617, protocatechuate catabolic process, meta-cleavage
GO:0019618, protocatechuate catabolic process, ortho-cleavage
GO:0022400, regulation of rhodopsin mediated signaling
GO:0022603, regulation of anatomical structure morphogenesis
GO:0043695, detection of pheromone
New term merges in biological_process ontology
GO:0048110 has been merged into GO:0007308, oocyte construction
GO:0048111 has been merged into GO:0007309, oocyte axis determination
GO:0048112 has been merged into GO:0007314, oocyte anterior/posterior axis determination
GO:0048113 has been merged into GO:0007315, pole plasm assembly
GO:0048123 has been merged into GO:0007310, oocyte dorsal/ventral axis determination
GO:0048124 has been merged into GO:0007311, maternal determination of dorsal/ventral axis, oocyte, germ-line encoded
GO:0048125 has been merged into GO:0007313, maternal determination of dorsal/ventral axis, oocyte, soma encoded
GO:0048126 has been merged into GO:0030722, establishment of oocyte nucleus localization during oocyte axis determination
GO:0048127 has been merged into GO:0042070, maintenance of oocyte nucleus localization during oocyte axis determination
GO:0048128 has been merged into GO:0007312, oocyte nucleus migration during oocyte axis determination
GO:0048129 has been merged into GO:0008103, oocyte microtubule cytoskeleton polarization
GO:0048130 has been merged into GO:0016325, oocyte microtubule cytoskeleton organization
GO:0048141 has been merged into GO:0048132, female germ-line stem cell division
GO:0048157 has been merged into GO:0048477, oogenesis
GO:0051662 has been merged into GO:0051663, oocyte nucleus localization during oocyte axis determination
Term movements in biological_process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0000744, karyogamy during conjugation without cellular fusion
- GO:0000745, nuclear migration during conjugation without cellular fusion
- GO:0000748, conjugation with mutual genetic exchange
- GO:0000756, response to pheromone during conjugation without cellular fusion
- GO:0000757, signal transduction during conjugation without cellular fusion
- GO:0000758, agglutination during conjugation without cellular fusion
- GO:0000759, cellular morphogenesis during conjugation without cellular fusion
- GO:0000760, adaptation to pheromone during conjugation without cellular fusion
- GO:0000761, conjugant formation
- GO:0006926, virus-infected cell apoptosis
Terms movements under GO Slim term 'nucleobase, nucleoside, nucleotide and nucleic acid metabolic process ; GO:0006139'
- GO:0009616, virus induced gene silencing
- GO:0051214, RNA virus induced gene silencing
- GO:0051215, DNA virus induced gene silencing
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
+ GO:0006324, S-phase-specific histone modification
- GO:0019055, modification by virus of host cell cycle regulation
- GO:0046792, suppression by virus of host cell cycle arrest
Terms movements under GO Slim term 'cell communication ; GO:0007154'
+ GO:0000756, response to pheromone during conjugation without cellular fusion
+ GO:0000758, agglutination during conjugation without cellular fusion
+ GO:0000759, cellular morphogenesis during conjugation without cellular fusion
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0000748, conjugation with mutual genetic exchange
+ GO:0000761, conjugant formation
Terms movements under GO Slim term 'anatomical structure morphogenesis ; GO:0009653'
- GO:0030704, vitelline membrane formation
Terms movements under GO Slim term 'viral reproduction ; GO:0016032'
- GO:0006926, virus-infected cell apoptosis
Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043'
- GO:0006948, induction by virus of cell-cell fusion in host
+ GO:0017055, negative regulation of transcriptional preinitiation complex assembly
+ GO:0045898, regulation of transcriptional preinitiation complex assembly
+ GO:0045899, positive regulation of transcriptional preinitiation complex assembly
+ GO:0051123, transcriptional preinitiation complex assembly
Terms movements under GO Slim term 'regulation of gene expression, epigenetic ; GO:0040029'
- GO:0009616, virus induced gene silencing
- GO:0051214, RNA virus induced gene silencing
- GO:0051215, DNA virus induced gene silencing
Terms movements under GO Slim term 'symbiosis, encompassing mutualism through parasitism ; GO:0044403'
- GO:0006926, virus-infected cell apoptosis
Terms movements under GO Slim term 'regulation of biological process ; GO:0050789'
- GO:0019055, modification by virus of host cell cycle regulation
+ GO:0022400, regulation of rhodopsin mediated signaling
- GO:0046792, suppression by virus of host cell cycle arrest
New terms in cellular_component ontology (18 new terms)
GO:0033254 GO:0005737 MAH D vacuolar transporter chaperone complex
GO:0043234
GO:0033255 GO:0005654 MAH D SAS acetyltransferase complex
GO:0043234
GO:0033256 GO:0005622 MAH D I-kappaB/NF-kappaB complex
GO:0043234
GO:0033257 GO:0005622 MAH D Bcl3/NF-kappaB2 complex
GO:0043234
GO:0033263 GO:0005768 MAH D CORVET complex
GO:0043234
GO:0033267 GO:0005623 MAH D axon part
GO:0033268 GO:0005623 MAH D node of Ranvier
GO:0033269 GO:0005623 MAH D internode region of axon
GO:0033270 GO:0005623 MAH D paranode region of axon
GO:0033276 GO:0005654 MAH D transcription factor TFTC complex
GO:0043234
GO:0033279 GO:0005840 MAH D 1733770 ribosomal subunit
GO:0033281 GO:0005886 MAH D 1550371 TAT protein translocation system complex
GO:0043234
GO:0033282 GO:0005764 MAH D protein C inhibitor-acrosin complex
GO:0043234
GO:0033289 GO:0005856 MAH D intraconoid microtubule
GO:0033290 GO:0005737 MAH D 1738124 eukaryotic 48S preinitiation complex
GO:0043234
GO:0033291 GO:0005737 MAH D 1738124 eukaryotic 80S initiation complex
GO:0043234
GO:0033309 GO:0005654 MAH D SBF transcription complex
GO:0043234
GO:0043769 GO:0005694 JL D telomere binding complex
Term name changes in cellular_component ontology
GO:0008180: signalosome complex --> signalosome
GO:0030119: membrane coat adaptor complex --> AP-type membrane coat adaptor complex
New definitions for cellular_component ontology terms (10 new definitions)
GO:0009380, excinuclease ABC complex
GO:0015627, type II protein secretion system complex
GO:0016008, major mitochondrial derivative
GO:0016009, minor mitochondrial derivative
GO:0016935, glycine-gated chloride channel complex
GO:0017053, transcriptional repressor complex
GO:0017054, negative cofactor 2 complex
GO:0017071, intracellular cyclic nucleotide activated cation channel complex
GO:0019183, histamine-gated chloride channel complex
GO:0020032, basal ring of apical complex
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
- GO:0031422, RecQ helicase-Topo III complex
Terms movements under GO Slim term 'chromosome ; GO:0005694'
+ GO:0031422, RecQ helicase-Topo III complex
Terms movements under GO Slim term 'protein complex ; GO:0043234'
- GO:0000311, plastid large ribosomal subunit
- GO:0000315, organellar large ribosomal subunit
- GO:0005762, mitochondrial large ribosomal subunit
- GO:0005842, cytosolic large ribosomal subunit (sensu Eukaryota)
- GO:0009282, cytosolic large ribosomal subunit (sensu Bacteria)
- GO:0015934, large ribosomal subunit
- GO:0030872, cytosolic large ribosomal subunit (sensu Archaea)
New terms in molecular_function ontology (101 new terms)
GO:0033224 GO:0005215 MAH D 2-aminoethylphosphonate transporter activity
GO:0033225 GO:0005215 MAH D 2-aminoethylphosphonate transporting ATPase activity
GO:0016787
GO:0033226 GO:0005488 MAH D 2-aminoethylphosphonate binding
GO:0033229 GO:0005215 MAH D 1723526 cysteine transporter activity
GO:0033230 GO:0005215 MAH D 1723526 cysteine-transporting ATPase activity
GO:0016787
GO:0033232 GO:0005215 MAH D 1723608 D-methionine-transporting ATPase activity
GO:0016787
GO:0033236 GO:0003824 MAH D 11-beta-hydroxysteroid dehydrogenase (NAD+) activity
GO:0033237 GO:0003824 MAH D 11-beta-hydroxysteroid dehydrogenase (NADP+) activity
GO:0033250 GO:0016787 MAH D penicillinase activity
GO:0033251 GO:0016787 MAH D cephalosporinase activity
GO:0033264 GO:0008233 MAH D bontoxilysin activity
GO:0033265 GO:0005488 MAH D choline binding
GO:0033266 GO:0005215 MAH D choline-transporting ATPase activity
GO:0016787
GO:0033283 GO:0005215 MAH D organic acid-transporting ATPase activity
GO:0016787
GO:0033284 GO:0005215 MAH D carboxylic acid-transporting ATPase activity
GO:0016787
GO:0033285 GO:0005215 MAH D monocarboxylic acid-transporting ATPase activity
GO:0016787
GO:0033286 GO:0005215 MAH D ectoine-transporting ATPase activity
GO:0016787
GO:0033287 GO:0005215 MAH D hydroxyectoine transporter activity
GO:0033288 GO:0005215 MAH D hydroxyectoine-transporting ATPase activity
GO:0016787
GO:0033293 GO:0005488 MAH D monocarboxylic acid binding
GO:0033294 GO:0005488 MAH D ectoine binding
GO:0033295 GO:0005488 MAH D hydroxyectoine binding
GO:0033296 GO:0030246 MAH D rhamnose binding
GO:0033297 GO:0005215 MAH D rhamnose-transporting ATPase activity
GO:0016787
GO:0033300 GO:0005215 MAH D dehydroascorbic acid transporter activity
GO:0043733 GO:0016787 JL D DNA-3-methyladenine glycosylase III activity
GO:0043734 GO:0003824 JL D DNA-N1-methyladenine dioxygenase activity
GO:0043735 GO:0003824 JL delta-9 acyl-phospholipid desaturase activity
GO:0043736 GO:0016787 JL D DNA-3-methyladenine glycosylase IV activity
GO:0043737 GO:0004518 JL D deoxyribonuclease V activity
GO:0043738 GO:0003824 JL D F420H2 dehydrogenase activity
GO:0043739 GO:0016787 JL D G/U mismatch-specific uracil-DNA glycosylase activity
GO:0043740 GO:0016787 JL D GTP cyclohydrolase IIa activity
GO:0043741 GO:0016740 JL D L-2-aminoadipate N-acetyltransferase activity
GO:0043742 GO:0016740 JL D LL-diaminopimelate aminotransferase activity
GO:0043743 GO:0016740 JL D LPPG:FO 2-phospho-L-lactate transferase activity
GO:0043744 GO:0016740 JL D N2-acetyl-L-aminoadipate kinase activity
GO:0043745 GO:0003824 JL D N2-acetyl-L-aminoadipate semialdehyde dehydrogenase activity
GO:0043746 GO:0016740 JL D N2-acetyl-L-lysine aminotransferase activity
GO:0043747 GO:0016787 JL D N2-acetyl-L-lysine deacetylase activity
GO:0043748 GO:0003824 JL D O-succinylbenzoate synthase activity
GO:0043749 GO:0016740 JL D phenol, water dikinase activity
GO:0043750 GO:0016740 JL D phosphatidylinositol alpha-mannosyltransferase activity
GO:0043751 GO:0016740 JL D polyphosphate:AMP phosphotransferase activity
GO:0043752 GO:0016740 JL D adenosylcobinamide kinase activity
GO:0043753 GO:0016740 JL D adenosylcobinamide-phosphate guanylyltransferase activity
GO:0043754 GO:0016740 JL D dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity
GO:0043755 GO:0016787 JL D alpha-ribazole phosphatase activity
GO:0043756 GO:0016787 JL D adenosylcobinamide hydrolase activity
GO:0043757 GO:0003824 JL D adenosylcobinamide-phosphate synthase activity
GO:0043758 GO:0003824 JL D acetate-CoA ligase (ADP-forming) activity
GO:0043759 GO:0003824 JL D branched-chain acyl-CoA synthetase (ADP-forming) activity
GO:0043760 GO:0016740 JL D acetyldiaminopimelate aminotransferase activity
GO:0043761 GO:0016740 JL D archaetidylserine synthase activity
GO:0043762 GO:0003824 JL D aryl-CoA synthetase (ADP-forming) activity
GO:0043763 GO:0030234 JL D UTP:glucose-1-phosphate uridylyltransferase regulator activity
GO:0043764 GO:0016740 JL D UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase activity
GO:0043765 GO:0004518 JL D T/G mismatch-specific endonuclease activity
GO:0043766 GO:0016740 JL D Sep-tRNA:Cys-tRNA synthase activity
GO:0043767 GO:0003824 JL D pyrrolysyl-tRNA synthetase activity
GO:0043768 GO:0003824 JL D S-ribosylhomocysteine lyase activity
GO:0043770 GO:0016740 JL D demethylmenaquinone methyltransferase activity
GO:0043771 GO:0016740 JL D cytidine kinase activity
GO:0043772 GO:0016740 JL D acyl-phosphate glycerol-3-phosphate acyltransferase activity
GO:0043773 GO:0003824 JL D coenzyme F420-0 gamma-glutamyl ligase activity
GO:0043774 GO:0003824 JL D coenzyme F420-2 alpha-glutamyl ligase activity
GO:0043775 GO:0003824 JL D cobyrinate a,c-diamide synthase activity
GO:0043776 GO:0016740 JL D cobalt-precorrin-6B C5-methyltransferase activity
GO:0043777 GO:0016740 JL D cobalt-precorrin-7 C15-methyltransferase activity
GO:0043778 GO:0003824 JL D cobalt-precorrin-8 methylmutase activity
GO:0043779 GO:0003824 JL D cobalt-precorrin-5A acetaldehyde-lyase activity
GO:0043780 GO:0016740 JL D cobalt-precorrin-5B C1-methyltransferase activity
GO:0043781 GO:0016740 JL D cobalt-factor II C20-methyltransferase activity
GO:0043782 GO:0016740 JL D cobalt-precorrin-3 C17-methyltransferase activity
GO:0043783 GO:0003824 JL D oxidoreductase activity, oxidizing metal ions with flavin as acceptor
GO:0043784 GO:0003824 JL D cob(II)yrinic acid a,c-diamide reductase activity
GO:0043785 GO:0016740 JL D cinnamoyl-CoA:phenyllactate CoA-transferase activity
GO:0043786 GO:0003824 JL D cinnamate reductase activity
GO:0043787 GO:0016740 JL D chlorophyll synthase activity
GO:0043788 GO:0016740 JL D cardiolipin synthetase 2 activity
GO:0043789 GO:0003824 JL D diguanylate cyclase activity
GO:0043790 GO:0016740 JL D dimethyladenosine transferase activity
GO:0043791 GO:0016740 JL D dimethylamine-coenzyme M methyltransferase activity
GO:0043792 GO:0016787 JL D enamidase activity
GO:0043793 GO:0003824 JL D beta-ribofuranosylaminobenzene 5'-phosphate synthase activity
GO:0043794 GO:0003824 JL D formate dehydrogenase (F420) activity
GO:0043795 GO:0003824 JL D glyceraldehyde oxidoreductase activity
GO:0043796 GO:0003824 JL D glyceraldehyde dehydrogenase (NADP) activity
GO:0043797 GO:0003824 JL D glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) activity
GO:0043798 GO:0003824 JL D glycerate 2-kinase activity
GO:0043799 GO:0003824 JL D glycine oxidase activity
GO:0043800 GO:0003824 JL D hexulose-6-phosphate isomerase activity
GO:0043801 GO:0003824 JL D hexulose-6-phosphate synthase activity
GO:0043802 GO:0003824 JL D hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) activity
GO:0043803 GO:0016740 JL D hydroxyneurosporene-O-methyltransferase activity
GO:0043804 GO:0016787 JL D imidazolone hydrolase activity
GO:0043805 GO:0003824 JL D indolepyruvate ferredoxin oxidoreductase activity
GO:0043806 GO:0016740 JL D keto acid formate lyase activity
GO:0043807 GO:0003824 JL D 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) activity
GO:0043808 GO:0016740 JL D lyso-ornithine lipid acyltransferase activity
GO:0043809 GO:0003824 JL D methylthioribulose 1-phosphate dehydratase activity
Term name changes in molecular_function ontology
GO:0001671: ATPase stimulator activity --> ATPase activator activity
GO:0004345: glucose-6-phosphate 1-dehydrogenase activity --> glucose-6-phosphate dehydrogenase activity
GO:0004499: dimethylaniline monooxygenase (N-oxide-forming) activity --> flavin-containing monooxygenase activity
GO:0004794: threonine ammonia-lyase activity --> L-threonine ammonia-lyase activity
GO:0018860: anthranilate--CoA ligase activity --> anthranilate-CoA ligase activity
GO:0046481: UDP-galactose:MGDG galactosyltransferase activity --> digalactosyldiacylglycerol synthase
GO:0047787: cortisone beta-reductase activity --> delta4-3-oxosteroid 5beta-reductase activity
New definitions for molecular_function ontology terms (16 new definitions)
GO:0001512, dihydronicotinamide riboside quinone reductase activity
GO:0003726, double-stranded RNA adenosine deaminase activity
GO:0004176, ATP-dependent peptidase activity
GO:0004553, hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004712, protein threonine/tyrosine kinase activity
GO:0008251, tRNA specific adenosine deaminase activity
GO:0008849, enterochelin esterase activity
GO:0016211, ammonia ligase activity
GO:0016800, hydrolase activity, hydrolyzing S-glycosyl compounds
GO:0016833, oxo-acid-lyase activity
GO:0016876, ligase activity, forming aminoacyl-tRNA and related compounds
GO:0016878, acid-thiol ligase activity
GO:0016880, acid-ammonia (or amide) ligase activity
GO:0016881, acid-amino acid ligase activity
GO:0017171, serine hydrolase activity
GO:0045330, aspartyl esterase activity
New term merges in molecular_function ontology
GO:0000507 has been merged into GO:0047184, 1-acylglycerophosphocholine O-acyltransferase activity
GO:0004426 has been merged into GO:0004833, tryptophan 2,3-dioxygenase activity
GO:0004759 has been merged into GO:0004091, carboxylesterase activity
GO:0008560 has been merged into GO:0008559, xenobiotic-transporting ATPase activity
GO:0016789 has been merged into GO:0004091, carboxylesterase activity
GO:0047076 has been merged into GO:0004499, flavin-containing monooxygenase activity
GO:0047226 has been merged into GO:0047273, galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity
GO:0047477 has been merged into GO:0047747, cholate-CoA ligase activity
GO:0047752 has been merged into GO:0047787, delta4-3-oxosteroid 5beta-reductase activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1499218 Fixed response to wounding --jasmonic acid
1578969 Works For Me relationship between exodeoxyribonuclease" and phosphodies
1694228 Works For Me inner endospore membrane
1723076 Fixed definition problem with 11beta-HSD activity
1723691 None conjugation parents
1723713 None GO:0007619-courtship behavior
1724273 Accepted add synonyms
1724311 Accepted ntr: penicillin catabolism regulation
1724378 Accepted penicillinase/cephalosporinase
1724748 Accepted missing parent mitochondrial processing peptidase activity
1728084 Accepted NTR: Vacuolar transporter chaperone complex
1728087 Accepted NTR: SAS acetyltransferase complex
1728275 Fixed cell cycle problems - cytokinesis not part_of mitosis
1728276 Fixed cell cycle problems - ‘mitotic G2 checkpoint’ is a misnomer
1728279 Fixed cell cycle problems - ‘mitotic checkpoint’ definition
1728282 Accepted cell cycle new term request: plastid DNA replication
1728285 Fixed rename ‘positive regulation of mitotic cell cycle, embryonic
1728287 Fixed cell cycle problems - ‘DNA replication’ part_of ‘S phase’
1728294 Fixed cell cycle problems - ‘regulation of DNA replication’ parent
1728301 Fixed cell cycle problems - ‘cell division’
1728302 Works For Me cell cycle problems - missing children of ‘cytokinesis’
1728308 Accepted abortive mitosis, mitosis without cytokinesis
1728531 None virus induced gene silencing
1728542 Accepted ntr: CORVET complex
1729057 Fixed problems with nucleoside transport process term placements
1729186 Accepted NTR: actin filament sliding
1730588 Works For Me query parentage
1730751 None ntr: peroxisome localization
1730884 Accepted bontoxilysin activity
1730894 Accepted choline binding and transport
1731073 Accepted node of Ranvier
1731309 Accepted RG: BCL3-NKFB2 Complex
1731477 Accepted transcription factor TFTC complex
1731807 Accepted phytate transport
1732046 None GO:0019055 modification by virus of host cell cycle regulati
1732165 Duplicate response to vitamin, response to vitamin B2
1732217 Accepted response to vitamin, response to vitamin B2
1732829 Accepted synonym for glutathione-disulfide reductase activity
1732993 Accepted new term: cell proliferation in midbrain
1734034 Fixed cell wall catabolic process missing parent
1734036 Works For Me missing parent mating-type switching
1734110 Works For Me tubulin folding parent
1737340 Works For Me MF term for peptidyl-arginine ADP-ribosylation activity
1738075 Accepted response to vitamin D
1738098 Accepted can we have "symbiosis" as a synonym for GO:0044403
1739038 Fixed ATPase stimulator activity
1739952 Accepted EC change of name for reaction
1740280 Accepted additional parentage for sarcolemma
1740879 Accepted ref genome; T-tubule development
1741053 Works For Me membrane coat terms
1741185 Accepted ectoine-transporting ATPase activity
1741376 Accepted apical complex terms
1741776 Accepted ectoine binding activity
1741792 Accepted ntr: rhamnose transporter/binding terms
1742904 Accepted ntr: contractile vacuole organization and biogenesis
1742917 Accepted ntr: secretion of lysosomal enzymes
1743034 Accepted dehydroascorbate transporter activity
1743040 Accepted better definition for GO:0015229
1743737 Accepted ntr: hydroxyectoine transport
1744029 Accepted ntr: SBF transcription complex
1744717 Accepted RecQ helicase-Topo III complex poss parent
Statistics:
biological_process: 14076 terms, 98.8% defined (13914 terms defined)
cellular_component: 2098 terms, 100.0% defined (2098 terms defined)
molecular_function: 8234 terms, 93.4% defined (7689 terms defined)
Total: 24408 terms, 97.1% defined (23701 terms defined)
Term errors
none