GO Monthly Release Notes for March 2007
========================
Generated on Mon Apr 2 15:48:02 2007
Files used:
gene_ontology.obo
OLD: version 4.194, 27:02:2007 19:30
NEW: version 4.216, 30:03:2007 18:30
goslim_generic
Key:
|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope
(obs)
1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name
Columns are tab-delimited and can be imported into Excel for ease of reading.
New terms in biological_process ontology (241 new terms)
GO:0010345 GO:0006519 TAIR D suberin biosynthetic process
GO:0006629
GO:0009058
GO:0019748
GO:0010346 GO:0007275 TAIR D shoot formation
GO:0009653
GO:0010350 GO:0006950 TAIR D cellular response to magnesium starvation
GO:0007154
GO:0009605
GO:0010351 GO:0006811 TAIR D lithium ion transport
GO:0010352 GO:0006811 TAIR D lithium ion export
GO:0010353 GO:0009719 TAIR D response to trehalose stimulus
GO:0010358 GO:0007275 TAIR D leaf shaping
GO:0009653
GO:0010359 GO:0008150 TAIR D regulation of anion channel activity
GO:0010360 GO:0008150 TAIR D negative regulation of anion channel activity
GO:0010361 GO:0008150 TAIR D regulation by blue light of anion channel activity
GO:0010362 GO:0008150 TAIR D negative regulation by blue light of anion channel activity
GO:0010363 GO:0008219 TAIR D regulation of hypersensitive response
GO:0050789
GO:0010364 GO:0006519 TAIR D regulation of ethylene biosynthetic process
GO:0009058
GO:0050789
GO:0010365 GO:0006519 TAIR D positive regulation of ethylene biosynthetic process
GO:0009058
GO:0050789
GO:0010366 GO:0006519 TAIR D negative regulation of ethylene biosynthetic process
GO:0009058
GO:0050789
GO:0010371 GO:0006629 TAIR D regulation of gibberellin biosynthetic process
GO:0009058
GO:0019748
GO:0050789
GO:0010372 GO:0006629 TAIR D positive regulation of gibberellin biosynthetic process
GO:0009058
GO:0019748
GO:0050789
GO:0010373 GO:0006629 TAIR D negative regulation of gibberellin biosynthetic process
GO:0009058
GO:0019748
GO:0050789
GO:0010374 GO:0007275 TAIR D stomatal complex development
GO:0010375 GO:0007275 TAIR D stomatal complex patterning
GO:0010376 GO:0007275 TAIR D stomatal complex formation
GO:0009653
GO:0010377 GO:0007275 TAIR D guard cell fate commitment
GO:0009653
GO:0030154
GO:0010378 GO:0009628 TAIR D temperature compensation of the circadian clock
GO:0010379 GO:0009058 TAIR D phaseic acid biosynthetic process
GO:0023002 GO:0007275 JIC D nuclear migration to embryo sac poles
GO:0016043
GO:0023003 GO:0007275 JIC D nuclear migration to the embryo sac center
GO:0016043
GO:0032980 GO:0007275 MAH D keratinocyte activation
GO:0030154
GO:0032981 GO:0016043 MAH D mitochondrial respiratory chain complex I assembly
GO:0019538
GO:0030154
GO:0032984 GO:0016043 MAH D macromolecular complex disassembly
GO:0032985 GO:0016043 MAH D protein-carbohydrate complex disassembly
GO:0032986 GO:0016043 MAH D protein-DNA complex disassembly
GO:0032987 GO:0016043 MAH D protein-lipid complex disassembly
GO:0032988 GO:0016043 MAH D protein-RNA complex disassembly
GO:0032989 GO:0009653 MAH D cellular structure morphogenesis
GO:0016043
GO:0032990 GO:0009653 MAH D cell part morphogenesis
GO:0016043
GO:0032995 GO:0016043 MAH D regulation of chitin- and beta-glucan-containing cell wall biogenesis
GO:0050789
GO:0033002 GO:0008283 MAH D muscle cell proliferation
GO:0033003 GO:0050789 MAH D regulation of mast cell activation
GO:0033004 GO:0050789 MAH D negative regulation of mast cell activation
GO:0033005 GO:0050789 MAH D positive regulation of mast cell activation
GO:0033006 GO:0050789 MAH D regulation of mast cell activation during immune response
GO:0033007 GO:0050789 MAH D negative regulation of mast cell activation during immune response
GO:0033008 GO:0050789 MAH D positive regulation of mast cell activation during immune response
GO:0033013 GO:0008152 MAH D tetrapyrrole metabolic process
GO:0033014 GO:0008152 MAH D tetrapyrrole biosynthetic process
GO:0033015 GO:0008152 MAH D tetrapyrrole catabolic process
GO:0033020 GO:0008152 MAH D cyclopentanol metabolic process
GO:0033021 GO:0009058 MAH D cyclopentanol biosynthetic process
GO:0033022 GO:0009056 MAH D cyclopentanol catabolic process
GO:0033023 GO:0008150 MAH D mast cell homeostasis
GO:0033024 GO:0008219 MAH D mast cell apoptosis
GO:0033025 GO:0008219 MAH D regulation of mast cell apoptosis
GO:0050789
GO:0033026 GO:0008219 MAH D negative regulation of mast cell apoptosis
GO:0050789
GO:0033027 GO:0008219 MAH D positive regulation of mast cell apoptosis
GO:0050789
GO:0033028 GO:0008219 MAH D myeloid cell apoptosis
GO:0033029 GO:0008219 MAH D regulation of neutrophil apoptosis
GO:0050789
GO:0033030 GO:0008219 MAH D negative regulation of neutrophil apoptosis
GO:0050789
GO:0033031 GO:0008219 MAH D positive regulation of neutrophil apoptosis
GO:0050789
GO:0033032 GO:0008219 MAH D regulation of myeloid cell apoptosis
GO:0050789
GO:0033033 GO:0008219 MAH D negative regulation of myeloid cell apoptosis
GO:0050789
GO:0033034 GO:0008219 MAH D positive regulation of myeloid cell apoptosis
GO:0050789
GO:0033035 GO:0007049 MAH D dipyrromethane cofactor binding
GO:0007165
GO:0050789
GO:0033036 GO:0008150 MAH D 1684590 macromolecule localization
GO:0033037 GO:0008150 MAH D 1684590 polysaccharide localization
GO:0033043 GO:0006996 MAH D regulation of organelle organization and biogenesis
GO:0050789
GO:0033044 GO:0006996 MAH D regulation of chromosome organization and biogenesis
GO:0050789
GO:0033045 GO:0006996 MAH D regulation of sister chromatid segregation
GO:0050789
GO:0033046 GO:0006996 MAH D negative regulation of sister chromatid segregation
GO:0050789
GO:0033047 GO:0006996 MAH D regulation of mitotic sister chromatid segregation
GO:0007049
GO:0050789
GO:0033048 GO:0006996 MAH D negative regulation of mitotic sister chromatid segregation
GO:0007049
GO:0050789
GO:0033049 GO:0008152 MAH D clavulanic acid metabolic process
GO:0033050 GO:0009058 MAH D clavulanic acid biosythetic process
GO:0033051 GO:0006519 MAH D aminophosphonate metabolic process
GO:0033052 GO:0006519 MAH D cyanoamino acid metabolic process
GO:0033053 GO:0006519 MAH D D-glutamine metabolic process
GO:0033054 GO:0006519 MAH D D-glutamate metabolic process
GO:0033055 GO:0006519 MAH D D-arginine metabolic process
GO:0033056 GO:0006519 MAH D D-ornithine metabolic process
GO:0033057 GO:0000003 MAH D reproductive behavior in a multicellular organism
GO:0007610
GO:0033058 GO:0008150 MAH D directional locomotion
GO:0033059 GO:0008150 MAH D cellular pigmentation
GO:0033060 GO:0008150 MAH D ocellus pigmentation
GO:0033067 GO:0008152 MAH D macrolide metabolic process
GO:0033068 GO:0009058 MAH D macrolide biosynthetic process
GO:0033069 GO:0008152 MAH D ansamycin metabolic process
GO:0033070 GO:0009058 MAH D ansamycin biosynthetic process
GO:0033071 GO:0008152 MAH D vancomycin metabolic process
GO:0033072 GO:0009058 MAH D vancomycin biosynthetic process
GO:0033073 GO:0006629 MAH D pinene metabolic process
GO:0019748
GO:0033074 GO:0006629 MAH D pinene catabolic process
GO:0009056
GO:0019748
GO:0033075 GO:0009058 MAH D isoquinoline alkaloid biosynthetic process
GO:0019748
GO:0033076 GO:0019748 MAH D isoquinoline alkaloid metabolic process
GO:0033077 GO:0007275 MAH D T cell differentiation in the thymus
GO:0030154
GO:0033078 GO:0007275 MAH D extrathymic T cell differentiation
GO:0030154
GO:0033079 GO:0008283 MAH D immature T cell proliferation
GO:0033080 GO:0007275 MAH D immature T cell proliferation in the thymus
GO:0008283
GO:0030154
GO:0033081 GO:0007275 MAH D regulation of T cell differentiation in the thymus
GO:0030154
GO:0050789
GO:0033082 GO:0007275 MAH D regulation of extrathymic T cell differentiation
GO:0030154
GO:0050789
GO:0033083 GO:0008283 MAH D regulation of immature T cell proliferation
GO:0050789
GO:0033084 GO:0007275 MAH D regulation of immature T cell proliferation in the thymus
GO:0008283
GO:0030154
GO:0050789
GO:0033085 GO:0007275 MAH D negative regulation of T cell differentiation in the thymus
GO:0030154
GO:0050789
GO:0033086 GO:0007275 MAH D negative regulation of extrathymic T cell differentiation
GO:0030154
GO:0050789
GO:0033087 GO:0008283 MAH D negative regulation of immature T cell proliferation
GO:0050789
GO:0033088 GO:0007275 MAH D negative regulation of immature T cell proliferation in the thymus
GO:0008283
GO:0030154
GO:0050789
GO:0033089 GO:0007275 MAH D positive regulation of T cell differentiation in the thymus
GO:0030154
GO:0050789
GO:0033090 GO:0007275 MAH D positive regulation of extrathymic T cell differentiation
GO:0030154
GO:0050789
GO:0033091 GO:0008283 MAH D positive regulation of immature T cell proliferation
GO:0050789
GO:0033092 GO:0007275 MAH D positive regulation of immature T cell proliferation in the thymus
GO:0008283
GO:0030154
GO:0050789
GO:0033103 GO:0016043 MAH D protein secretion by the type VI secretion system
GO:0033108 GO:0016043 MAH D mitochondrial respiratory chain complex assembly
GO:0019538
GO:0030154
GO:0033109 GO:0007010 MAH D cortical actin cytoskeleton stabilization
GO:0043705 GO:0006519 JL D cyanophycin metabolism
GO:0051842 AI D 1368335 evasion or tolerance of symbiont immune response
GO:0052184 AI D modulation by organism of symbiont hormone or growth regulator levels
GO:0052326 AI D interaction with symbiont via protein secreted by type IV secretion system
GO:0052327 AI D interaction with symbiont via protein secreted by type II secretion system
GO:0052328 AI D interaction with symbiont via protein secreted by type III secretion system
GO:0052343 AI D positive regulation by organism of symbiont phytoalexin production
GO:0052346 AI D positive regulation by organism of defense-related symbiont nitric oxide production
GO:0052349 AI D positive regulation by organism of defense-related symbiont reactive oxygen species production
GO:0052350 AI D induction by organism of induced systemic resistance in symbiont
GO:0052351 AI D induction by organism of systemic acquired resistance in symbiont
GO:0052375 AI D evasion or tolerance by organism of symbiont-produced nitric oxide
GO:0052377 AI D evasion or tolerance by organism of symbiont-produced phytoalexins
GO:0052383 AI D induction by organism of symbiont innate immunity
GO:0052384 AI D evasion or tolerance by organism of symbiont-produced reactive oxygen species
GO:0052387 AI D induction by organism of symbiont apoptosis
GO:0052392 AI D induction by organism of defense-related symbiont calcium ion flux
GO:0052394 AI D induction by organism of defense-related symbiont cell wall thickening
GO:0052395 AI D induction by organism of defense-related symbiont nitric oxide production
GO:0052396 AI D induction by organism of symbiont non-apoptotic programmed cell death
GO:0052398 AI D induction by organism of symbiont phytoalexin production
GO:0052399 AI D induction by organism of symbiont programmed cell death
GO:0052401 AI D induction by organism of defense-related symbiont reactive oxygen species production
GO:0052402 AI D induction by organism of symbiont resistance gene-dependent defense response
GO:0052424 AI D modification by organism of symbiont morphology or physiology via protein secreted by type III secretion system
GO:0052425 AI D modification by organism of symbiont morphology or physiology via protein secreted by type II secretion system
GO:0052426 AI D modification by organism of symbiont morphology or physiology via substance secreted by type IV secretion system
GO:0052429 AI D modulation by organism of symbiont B-cell mediated immune response
GO:0052431 AI D modulation by organism of symbiont T-cell mediated immune response
GO:0052432 AI D modulation by organism of symbiont apoptosis
GO:0052434 AI D modulation by organism of symbiont cell-mediated immune response
GO:0052436 AI D modulation by organism of defense-related symbiont calcium-dependent protein kinase pathway
GO:0052437 AI D modulation by organism of defense-related symbiont calcium ion flux
GO:0052438 AI D modulation by organism of defense-related symbiont callose deposition
GO:0052439 AI D modulation by organism of defense-related symbiont cell wall callose deposition
GO:0052440 AI D modulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway
GO:0052442 AI D modulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway
GO:0052444 AI D modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway
GO:0052446 AI D modulation by organism of defense-related symbiont cell wall thickening
GO:0052447 AI D modulation by organism of symbiont ethylene-mediated defense response
GO:0052448 AI D modulation by organism of ethylene levels in symbiont
GO:0052450 AI D modulation by organism of induced systemic resistance in symbiont
GO:0052451 AI D modulation by organism of symbiont inflammatory response
GO:0052452 AI D modulation by organism of symbiont innate immunity
GO:0052453 AI D modulation by organism of symbiont intracellular transport
GO:0052454 AI D modulation by organism of symbiont jasmonic acid-mediated defense response
GO:0052455 AI D modulation by organism of jasmonic acid levels in symbiont
GO:0052457 AI D modulation by organism of defense-related symbiont nitric oxide production
GO:0052458 AI D modulation by organism of symbiont non-apoptotic programmed cell death
GO:0052461 AI D modulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity
GO:0052463 AI D modulation by organism of symbiont phytoalexin production
GO:0052464 AI D modulation by organism of symbiont programmed cell death
GO:0052465 AI D modulation by organism of defense-related symbiont reactive oxygen species production
GO:0052466 AI D modulation by organism of symbiont resistance gene-dependent defense response
GO:0052467 AI D modulation by organism of symbiont salicylic acid-mediated defense response
GO:0052468 AI D modulation by organism of salicylic acid levels in symbiont
GO:0052471 AI D modulation by organism of systemic acquired resistance in symbiont
GO:0052473 AI D negative regulation by organism of symbiont B-cell mediated immune response
GO:0052474 AI D negative regulation by organism of symbiont T-cell mediated immune response
GO:0052475 AI D negative regulation by organism of symbiont cell-mediated immune response
GO:0052476 AI D negative regulation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway
GO:0052477 AI D negative regulation by organism of defense-related symbiont callose deposition
GO:0052478 AI D negative regulation by organism of defense-related symbiont cell wall callose deposition
GO:0052479 AI D negative regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway
GO:0052480 AI D negative regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway
GO:0052481 AI D negative regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway
GO:0052484 AI D negative regulation by organism of symbiont ethylene-mediated defense response
GO:0052485 AI D negative regulation by organism of symbiont inflammatory response
GO:0052486 AI D negative regulation by organism of symbiont innate immunity
GO:0052487 AI D negative regulation by organism of symbiont jasmonic acid-mediated defense response
GO:0052488 AI D negative regulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity
GO:0052491 AI D negative regulation by organism of symbiont salicylic acid-mediated defense response
GO:0052498 AI D pathogen-associated molecular pattern dependent induction by organism of symbiont innate immunity
GO:0052499 AI D pathogen-associated molecular pattern dependent modulation by organism of symbiont innate immunity
GO:0052500 AI D positive regulation by organism of symbiont apoptosis
GO:0052503 AI D positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway
GO:0052504 AI D positive regulation by organism of defense-related symbiont callose deposition
GO:0052505 AI D positive regulation by organism of defense-related symbiont cell wall callose deposition
GO:0052506 AI D positive regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway
GO:0052507 AI D positive regulation by organism of defense-related symbiont jasmonic acid-mediated signal transduction pathway
GO:0052508 AI D positive regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway
GO:0052511 AI D positive regulation by organism of symbiont ethylene-mediated defense response
GO:0052512 AI D positive regulation by organism of hormone or growth regulator levels in symbiont
GO:0052514 AI D positive regulation by organism of symbiont inflammatory response
GO:0052515 AI D positive regulation by organism of symbiont innate immunity
GO:0052516 AI D positive regulation by organism of symbiont jasmonic acid-mediated defense response
GO:0052517 AI D positive regulation by organism of symbiont non-apoptotic programmed cell death
GO:0052523 AI D positive regulation by organism of symbiont programmed cell death
GO:0052524 AI D positive regulation by organism of symbiont salicylic acid-mediated defense response
GO:0052528 AI D upregulation by organism of symbiont programmed cell death
GO:0052530 AI D positive regulation by organism of symbiont resistance gene-dependent defense response
GO:0052531 AI D positive regulation by organism of defense-related symbiont calcium ion flux
GO:0052534 AI D positive regulation by organism of induced systemic resistance in symbiont
GO:0052536 AI D positive regulation by organism of systemic acquired resistance in symbiont
GO:0052540 AI D positive regulation by organism of defense-related symbiont cell wall thickening
GO:0052554 AI D modulation by organism of symbiont immune response
GO:0052557 AI D positive regulation by organism of symbiont immune response
GO:0052560 AI D induction by organism of symbiont immune response
GO:0052563 AI D negative regulation by organism of symbiont immune response
GO:0052568 AI D response to symbiont phytoalexin production
GO:0052569 AI D response to defense-related symbiont nitric oxide production
GO:0052570 AI D response to defense-related symbiont reactive oxygen species production
GO:0052571 AI D response to symbiont immune response
GO:0060059 GO:0009653 AI D embryonic retina morphogenesis in camera-type eye
GO:0009790
GO:0060060 GO:0007275 AI D post-embryonic retina morphogenesis in camera-type eye
GO:0009653
GO:0060061 GO:0007267 AI D Spemann organizer formation
GO:0009653
GO:0030154
GO:0060062 GO:0007267 AI D Spemann organizer formation at the dorsal lip of the blastopore
GO:0009653
GO:0030154
GO:0060063 GO:0007267 AI D Spemann organizer formation at the embryonic shield
GO:0009653
GO:0030154
GO:0060064 GO:0007267 AI D Spemann organizer formation at the anterior end of the primitive streak
GO:0009653
GO:0030154
GO:0060065 GO:0000003 AI D uterus development
GO:0060066 GO:0000003 AI D fallopian tube development
GO:0060067 GO:0000003 AI D cervix development
GO:0060068 GO:0000003 AI D vagina development
GO:0060069 GO:0007165 AI D Wnt receptor signaling pathway, regulating spindle positioning
GO:0060070 GO:0007165 AI D Wnt receptor signaling pathway through beta-catenin
GO:0060071 GO:0007165 AI D Wnt receptor signaling pathway, planar cell polarity pathway
GO:0009653
GO:0060073 GO:0008150 AI D micturition
GO:0060074 GO:0007275 AI D synapse maturation
GO:0016043
GO:0060075 GO:0019725 AI D regulation of resting membrane potential
GO:0060078 GO:0019725 AI D regulation of postsynaptic membrane potential
GO:0060079 GO:0019725 AI D regulation of excitatory postsynaptic membrane potential
GO:0060080 GO:0019725 AI D regulation of inhibitory postsynaptic membrane potential
GO:0060081 GO:0019725 AI D membrane hyperpolarization
GO:0060082 GO:0009605 AI D eye blink reflex
GO:0060083 GO:0008150 AI D smooth muscle contraction involved in micturition
GO:0060084 GO:0007267 AI D synaptic transmission involved in micturition
GO:0060085 GO:0050789 AI D smooth muscle relaxation of the bladder outlet
GO:0060086 GO:0008150 AI D circadian thermoregulation
GO:0060087 GO:0050789 AI D relaxation of vascular smooth muscle
GO:0060088 GO:0009653 AI D stereocilium organization and biogenesis
GO:0009790
GO:0016043
GO:0030154
New obsoletions in biological_process ontology
GO:0009781, photosynthetic water oxidation: represents a molecular function.
Term name changes in biological_process ontology
GO:0001410: chlamydospore development (sensu Candida albicans) --> chlamydospore development
GO:0001702: gastrulation (sensu Deuterostomia) --> gastrulation with mouth forming second
GO:0001703: gastrulation (sensu Protostomia) --> gastrulation with mouth forming first
GO:0001751: eye photoreceptor cell differentiation (sensu Endopterygota) --> compound eye photoreceptor cell differentiation
GO:0002165: larval or pupal development (sensu Insecta) --> instar larval or pupal development
GO:0002168: larval development (sensu Insecta) --> instar larval development
GO:0006464: protein modification --> protein modification process
GO:0007223: frizzled-2 signaling pathway --> Wnt receptor signaling pathway, calcium modulating pathway
GO:0007276: gametogenesis --> gamete generation
GO:0007338: fertilization (sensu Metazoa) --> single fertilization
GO:0007458: progression of morphogenetic furrow (sensu Endopterygota) --> progression of morphogenetic furrow during compound eye morphogenesis
GO:0007591: molting cycle (sensu Insecta) --> molting cycle, chitin-based cuticle
GO:0008583: mystery cell fate differentiation (sensu Endopterygota) --> mystery cell fate differentiation
GO:0008594: photoreceptor cell morphogenesis (sensu Endopterygota) --> photoreceptor cell morphogenesis
GO:0009272: cell wall biosynthetic process (sensu Fungi) --> chitin- and beta-glucan-containing cell wall biogenesis
GO:0009273: cell wall biosynthetic process (sensu Bacteria) --> peptidoglycan-based cell wall biogenesis
GO:0009553: female gametophyte development --> embryo sac development
GO:0009558: cellularization of megagametophyte --> cellularization of the embryo sac
GO:0009559: female gametophyte central cell differentiation --> embryo sac central cell differentiation
GO:0009560: female gametophyte egg cell differentiation --> embryo sac egg cell differentiation
GO:0009561: megagametophyte nuclear division --> megagametogenesis
GO:0009562: megagametophyte nuclear migration --> embryo sac nuclear migration
GO:0009567: double fertilization (sensu Magnoliophyta) --> double fertilization forming a zygote and endosperm
GO:0009677: double fertilization (sensu Gnetophyta) --> double fertilization forming two zygotes
GO:0009685: gibberellic acid metabolic process --> gibberellin metabolic process
GO:0009686: gibberellic acid biosynthetic process --> gibberellin biosynthetic process
GO:0009739: response to gibberellic acid stimulus --> response to gibberellin stimulus
GO:0009832: cell wall biosynthetic process (sensu Magnoliophyta) --> cellulose and pectin-containing cell wall biogenesis
GO:0009833: primary cell wall biosynthetic process (sensu Magnoliophyta) --> cellulose and pectin-containing primary cell wall biogenesis
GO:0009834: secondary cell wall biosynthetic process (sensu Magnoliophyta) --> cellulose and pectin-containing secondary cell wall biogenesis
GO:0009920: cell plate formation (sensu Magnoliophyta) --> cell plate formation involved in cellulose and pectin-containing cell wall biogenesis
GO:0010004: gastrulation (sensu Insecta) --> gastrulation involving germ band extension
GO:0010069: zygote asymmetric cytokinesis (sensu Magnoliophyta) --> zygote asymmetric cytokinesis in the embryo sac
GO:0010149: senescence (sensu Magnoliophyta) --> senescence
GO:0015721: bile acid transport --> bile acid and bile salt transport
GO:0016330: second mitotic wave (sensu Endopterygota) --> second mitotic wave during compound eye morphogenesis
GO:0018988: molting cycle (sensu Protostomia and Nematoda) --> molting cycle, protein-based cuticle
GO:0018990: ecdysis (sensu Insecta) --> ecdysis, chitin-based cuticle
GO:0018996: molting cycle (sensu Nematoda) --> molting cycle, collagen and cuticulin-based cuticle
GO:0032640: tumor necrosis factor-alpha production --> tumor necrosis factor production
GO:0032641: tumor necrosis factor-beta production --> lymphotoxin A production
GO:0032680: regulation of tumor necrosis factor-alpha production --> regulation of tumor necrosis factor production
GO:0032681: regulation of tumor necrosis factor-beta production --> regulation of lymphotoxin A production
GO:0032720: negative regulation of tumor necrosis factor-alpha production --> negative regulation of tumor necrosis factor production
GO:0032721: negative regulation of tumor necrosis factor-beta production --> negative regulation of lymphotoxin A production
GO:0032760: positive regulation of tumor necrosis factor-alpha production --> positive regulation of tumor necrosis factor production
GO:0032761: positive regulation of tumor necrosis factor-beta production --> positive regulation of lymphotoxin A production
GO:0032763: regulation of mast cytokine production --> regulation of mast cell cytokine production
GO:0032764: negative regulation of mast cytokine production --> negative regulation of mast cell cytokine production
GO:0032765: positive regulation of mast cytokine production --> positive regulation of mast cell cytokine production
GO:0032940: cellular secretion --> secretion by cell
GO:0032941: tissue secretion --> secretion by tissue
GO:0035209: pupal development (sensu Insecta) --> pupal development
GO:0035210: prepupal development (sensu Insecta) --> prepupal development
GO:0035264: body growth --> multicellular organism growth
GO:0040004: cuticular attachment to epithelium (sensu Nematoda) --> collagen and cuticulin-based cuticle attachment to epithelium
GO:0040005: cuticular attachment to epithelium (sensu Insecta) --> chitin-based cuticle attachment to epithelium
GO:0040006: cuticular attachment to epithelium (sensu Protostomia and Nematoda) --> protein-based cuticle attachment to epithelium
GO:0042051: eye photoreceptor development (sensu Endopterygota) --> compound eye photoreceptor development
GO:0042067: establishment of ommatidial polarity (sensu Endopterygota) --> establishment of ommatidial polarity
GO:0042109: tumor necrosis factor-beta biosynthetic process --> lymphotoxin A biosynthetic process
GO:0042394: ecdysis (sensu Protostomia and Nematoda) --> ecdysis, protein-based cuticle
GO:0042395: ecdysis (sensu Nematoda) --> ecdysis, collagen and cuticulin-based cuticle
GO:0042533: tumor necrosis factor-alpha biosynthetic process --> tumor necrosis factor biosynthetic process
GO:0042534: regulation of tumor necrosis factor-alpha biosynthetic process --> regulation of tumor necrosis factor biosynthetic process
GO:0042535: positive regulation of tumor necrosis factor-alpha biosynthetic process --> positive regulation of tumor necrosis factor biosynthetic process
GO:0042536: negative regulation of tumor necrosis factor-alpha biosynthetic process --> negative regulation of tumor necrosis factor biosynthetic process
GO:0042546: cell wall biosynthetic process --> cell wall biogenesis
GO:0043016: regulation of tumor necrosis factor-beta biosynthetic process --> regulation of lymphotoxin A biosynthetic process
GO:0043017: positive regulation of tumor necrosis factor-beta biosynthetic process --> positive regulation of lymphotoxin A biosynthetic process
GO:0043018: negative regulation of tumor necrosis factor-beta biosynthetic process --> negative regulation of lymphotoxin A biosynthetic process
GO:0043164: cell wall biosynthetic process (sensu ProteoBacteria) --> 1-2nm peptidoglycan-based cell wall biogenesis
GO:0045314: regulation of eye photoreceptor development (sensu Endopterygota) --> regulation of compound eye photoreceptor development
GO:0045315: positive regulation of eye photoreceptor development (sensu Endopterygota) --> positive regulation of compound eye photoreceptor development
GO:0045316: negative regulation of eye photoreceptor development (sensu Endopterygota) --> negative regulation of compound eye photoreceptor development
GO:0045487: gibberellic acid catabolic process --> gibberellin catabolic process
GO:0045691: regulation of female gametophyte central cell differentiation --> regulation of embryo sac central cell differentiation
GO:0045692: negative regulation of female gametophyte central cell differentiation --> negative regulation of embryo sac central cell differentiation
GO:0045693: positive regulation of female gametophyte central cell differentiation --> positive regulation of embryo sac central cell differentiation
GO:0045694: regulation of female gametophyte egg cell differentiation --> regulation of embryo sac egg cell differentiation
GO:0045695: negative regulation of female gametophyte egg cell differentiation --> negative regulation of embryo sac egg cell differentiation
GO:0045696: positive regulation of female gametophyte egg cell differentiation --> positive regulation of embryo sac egg cell differentiation
GO:0046667: retinal cell programmed cell death (sensu Endopterygota) --> compound eye retinal cell programmed cell death
GO:0046669: regulation of retinal cell programmed cell death (sensu Endopterygota) --> regulation of compound eye retinal cell programmed cell death
GO:0046672: positive regulation of retinal cell programmed cell death (sensu Endopterygota) --> positive regulation of compound eye retinal cell programmed cell death
GO:0046673: negative regulation of retinal cell programmed cell death (sensu Endopterygota) --> negative regulation of compound eye retinal cell programmed cell death
GO:0046675: induction of retinal cell programmed cell death (sensu Endopterygota) --> induction of compound eye retinal cell programmed cell death
GO:0048052: R1/R6 cell differentiation (sensu Endopterygota) --> R1/R6 cell differentiation
GO:0048053: R1/R6 development (sensu Endopterygota) --> R1/R6 development
GO:0048054: R2/R5 cell differentiation (sensu Endopterygota) --> R2/R5 cell differentiation
GO:0048055: R2/R5 development (sensu Endopterygota) --> R2/R5 development
GO:0048056: R3/R4 cell differentiation (sensu Endopterygota) --> R3/R4 cell differentiation
GO:0048057: R3/R4 development (sensu Endopterygota) --> R3/R4 development
GO:0048058: corneal lens development (sensu Endopterygota) --> compound eye corneal lens development
GO:0048072: eye pigmentation (sensu Endopterygota) --> compound eye pigmentation
GO:0048076: regulation of eye pigmentation (sensu Endopterygota) --> regulation of compound eye pigmentation
GO:0048077: negative regulation of eye pigmentation (sensu Endopterygota) --> negative regulation of compound eye pigmentation
GO:0048078: positive regulation of eye pigmentation (sensu Endopterygota) --> positive regulation of compound eye pigmentation
GO:0048229: gametophyte development (sensu Magnoliophyta) --> gametophyte development
GO:0048235: sperm cell differentiation (sensu Magnoliophyta) --> male gametophyte sperm cell differentiation
GO:0048707: larval or pupal morphogenesis (sensu Insecta) --> instar larval or pupal morphogenesis
GO:0048750: corneal lens morphogenesis (sensu Endopterygota) --> compound eye corneal lens morphogenesis
GO:0051128: regulation of cell organization and biogenesis --> regulation of cellular component organization and biogenesis
GO:0051278: cell wall polysaccharide biosynthetic process (sensu Fungi) --> chitin- and beta-glucan-containing cell wall polysaccharide biosynthetic process
GO:0060004: reflex process --> reflex
GO:0065003: macromolecule complex assembly --> macromolecular complex assembly
New definitions for biological_process ontology terms (3 new definitions)
GO:0000410, negative regulation of transcription by galactose
GO:0006540, glutamate decarboxylation to succinate
GO:0007315, pole plasm assembly
New term merges in biological_process ontology
GO:0001749 has been merged into GO:0042463, non-eye photoreceptor cell development
GO:0002219 has been merged into GO:0002218, activation of innate immune response
GO:0002226 has been merged into GO:0045087, innate immune response
GO:0007222 has been merged into GO:0016055, Wnt receptor signaling pathway
GO:0007467 has been merged into GO:0046530, photoreceptor cell differentiation
GO:0009552 has been merged into GO:0007276, gamete generation
GO:0009564 has been merged into GO:0009555, male gametophyte development
GO:0010261 has been merged into GO:0010260, organ senescence
GO:0043355 has been merged into GO:0009913, epidermal cell differentiation
GO:0043356 has been merged into GO:0009957, epidermal cell fate specification
GO:0045673 has been merged into GO:0046532, regulation of photoreceptor cell differentiation
GO:0045674 has been merged into GO:0046533, negative regulation of photoreceptor cell differentiation
GO:0045675 has been merged into GO:0046534, positive regulation of photoreceptor cell differentiation
GO:0048233 has been merged into GO:0009560, embryo sac egg cell differentiation
GO:0048234 has been merged into GO:0048235, male gametophyte sperm cell differentiation
GO:0048828 has been merged into GO:0048598, embryonic morphogenesis
Term movements in biological_process ontology:
Terms movements under GO Slim term 'reproduction ; GO:0000003'
- GO:0009554, megasporogenesis
- GO:0009556, microsporogenesis
- GO:0010064, embryonic shoot morphogenesis
- GO:0010086, embryonic root morphogenesis
Terms movements under GO Slim term 'lipid metabolic process ; GO:0006629'
+ GO:0009448, gamma-aminobutyric acid metabolic process
+ GO:0009449, gamma-aminobutyric acid biosynthetic process
+ GO:0009450, gamma-aminobutyric acid catabolic process
+ GO:0019605, butyrate metabolic process
+ GO:0019606, 2-oxobutyrate catabolic process
+ GO:0030645, glucose catabolic process to butyrate
+ GO:0042618, poly-hydroxybutyrate metabolic process
+ GO:0042619, poly-hydroxybutyrate biosynthetic process
+ GO:0046358, butyrate biosynthetic process
+ GO:0046359, butyrate catabolic process
+ GO:0046360, 2-oxobutyrate biosynthetic process
+ GO:0046361, 2-oxobutyrate metabolic process
Terms movements under GO Slim term 'response to stress ; GO:0006950'
+ GO:0002234, detection of endoplasmic reticulum overloading
+ GO:0006983, ER overload response
+ GO:0006985, EOR-mediated activation of NF-kappaB
Terms movements under GO Slim term 'cell cycle ; GO:0007049'
+ GO:0009554, megasporogenesis
Terms movements under GO Slim term 'multicellular organismal development ; GO:0007275'
- GO:0002093, auditory receptor cell morphogenesis
+ GO:0009957, epidermal cell fate specification
- GO:0010149, senescence
- GO:0010150, leaf senescence
- GO:0010260, organ senescence
- GO:0032120, prospore membrane formation
+ GO:0048314, embryo sac morphogenesis
Terms movements under GO Slim term 'behavior ; GO:0007610'
- GO:0007320, insemination
- GO:0007321, sperm displacement
- GO:0007618, mating
- GO:0007620, copulation
- GO:0042713, sperm ejaculation
- GO:0043084, penile erection
- GO:0046692, sperm competition
- GO:0046693, sperm storage
- GO:0046694, sperm incapacitation
Terms movements under GO Slim term 'biological_process ; GO:0008150'
+ GO:0010149, senescence
+ GO:0010150, leaf senescence
+ GO:0010260, organ senescence
- GO:0032898, neurotrophin production
- GO:0032902, nerve growth factor production
+ GO:0032905, transforming growth factor-beta1 production
Terms movements under GO Slim term 'metabolic process ; GO:0008152'
- GO:0019605, butyrate metabolic process
- GO:0042618, poly-hydroxybutyrate metabolic process
- GO:0046361, 2-oxobutyrate metabolic process
Terms movements under GO Slim term 'cell death ; GO:0008219'
+ GO:0032898, neurotrophin production
+ GO:0032899, regulation of neurotrophin production
+ GO:0032900, negative regulation of neurotrophin production
+ GO:0032901, positive regulation of neurotrophin production
+ GO:0032902, nerve growth factor production
+ GO:0032903, regulation of nerve growth factor production
+ GO:0032904, negative regulation of nerve growth factor production
Terms movements under GO Slim term 'biosynthetic process ; GO:0009058'
- GO:0009272, chitin- and beta-glucan-containing cell wall biogenesis
- GO:0009273, peptidoglycan-based cell wall biogenesis
- GO:0009832, cellulose and pectin-containing cell wall biogenesis
- GO:0009833, cellulose and pectin-containing primary cell wall biogenesis
- GO:0009834, cellulose and pectin-containing secondary cell wall biogenesis
- GO:0009920, cell plate formation involved in cellulose and pectin-containing cell wall biogenesis
- GO:0010215, cellulose microfibril organization
- GO:0042546, cell wall biogenesis
- GO:0043164, 1-2nm peptidoglycan-based cell wall biogenesis
Terms movements under GO Slim term 'anatomical structure morphogenesis ; GO:0009653'
+ GO:0009957, epidermal cell fate specification
Terms movements under GO Slim term 'embryonic development ; GO:0009790'
+ GO:0002093, auditory receptor cell morphogenesis
- GO:0048314, embryo sac morphogenesis
Terms movements under GO Slim term 'cellular component organization and biogenesis ; GO:0016043'
+ GO:0043241, protein complex disassembly
+ GO:0043242, negative regulation of protein complex disassembly
+ GO:0043243, positive regulation of protein complex disassembly
+ GO:0043244, regulation of protein complex disassembly
Terms movements under GO Slim term 'protein metabolic process ; GO:0019538'
- GO:0000390, spliceosome disassembly
- GO:0000391, U2-dependent spliceosome disassembly
- GO:0000392, U12-dependent spliceosome disassembly
- GO:0032790, ribosome disassembly
Terms movements under GO Slim term 'regulation of biological process ; GO:0050789'
+ GO:0032898, neurotrophin production
+ GO:0032902, nerve growth factor production
- GO:0032905, transforming growth factor-beta1 production
New terms in cellular_component ontology (57 new terms)
GO:0000438 GO:0005654 SGD D core TFIIH complex portion of holo TFIIH complex
GO:0043234
GO:0000439 GO:0043234 SGD D core TFIIH complex
GO:0000440 GO:0005634 SGD D core TFIIH complex portion of NEF3 complex
GO:0043234
GO:0000441 GO:0043234 SGD D SSL2-core TFIIH complex
GO:0000442 GO:0005634 SGD D SSL2-core TFIIH complex portion of NEF3 complex
GO:0043234
GO:0000443 GO:0005654 SGD D SSL2-core TFIIH complex portion of holo TFIIH complex
GO:0043234
GO:0010367 GO:0005576 TAIR D extracellular isoamylase complex
GO:0043234
GO:0010368 GO:0009536 TAIR D chloroplast isoamylase complex
GO:0043234
GO:0010369 GO:0005694 TAIR D chromocenter
GO:0010370 GO:0005694 TAIR D perinucleolar chromocenter
GO:0032982 GO:0005856 MAH D myosin filament
GO:0043234
GO:0032983 GO:0005886 MAH D kainate selective glutamate receptor complex
GO:0043234
GO:0032991 GO:0005575 MAH D macromolecular complex
GO:0032992 GO:0005575 MAH D protein-carbohydrate complex
GO:0032993 GO:0005575 MAH D protein-DNA complex
GO:0032994 GO:0005575 MAH D protein-lipid complex
GO:0032996 GO:0005622 MAH D Bcl3-Bcl10 complex
GO:0043234
GO:0032997 GO:0005886 MAH D Fc receptor complex
GO:0043234
GO:0032998 GO:0005886 MAH D Fc-epsilon receptor I complex
GO:0043234
GO:0032999 GO:0005886 MAH D Fc-alpha receptor I complex
GO:0043234
GO:0033000 GO:0005886 MAH D Fc-gamma receptor I complex
GO:0043234
GO:0033001 GO:0005886 MAH D Fc-gamma receptor III complex
GO:0043234
GO:0033009 GO:0009536 MAH D nucleomorph
GO:0033010 GO:0005886 MAH D paranodal junction
GO:0033011 GO:0005737 MAH D 1689739 perinuclear theca
GO:0005856
GO:0033012 GO:0005886 MAH D porosome
GO:0033016 GO:0005576 MAH D rhoptry membrane
GO:0005623
GO:0043226
GO:0033017 GO:0005783 MAH D sarcoplasmic reticulum membrane
GO:0033018 GO:0005783 MAH D sarcoplasmic reticulum lumen
GO:0033061 GO:0005634 MAH D DNA recombinase mediator complex
GO:0043234
GO:0033062 GO:0005634 MAH D Rhp55-Rhp57 complex
GO:0043234
GO:0033063 GO:0005634 MAH D Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0043234
GO:0033064 GO:0005634 MAH D XRCC2-RAD51D complex
GO:0043234
GO:0033065 GO:0005634 MAH D Rad51C-XRCC3 complex
GO:0043234
GO:0033066 GO:0005634 MAH D Rad51B-Rad51C complex
GO:0043234
GO:0033093 GO:0016023 MAH D Weibel-Palade body
GO:0033095 GO:0016023 MAH D aleurone grain
GO:0033096 GO:0009536 MAH D amyloplast envelope
GO:0033097 GO:0009536 MAH D amyloplast membrane
GO:0033098 GO:0009536 MAH D amyloplast inner membrane
GO:0033099 GO:0005622 MAH D attachment organelle
GO:0043226
GO:0033100 GO:0005654 MAH D NuA3 histone acetyltransferase complex
GO:0043234
GO:0033101 GO:0005886 MAH D bud membrane
GO:0033102 GO:0005737 MAH D acidocalcisome membrane
GO:0043226
GO:0033104 GO:0005623 MAH D type VI protein secretion system complex
GO:0043234
GO:0033105 GO:0005622 MAH D chlorosome envelope
GO:0043226
GO:0033106 GO:0005794 MAH D cis-Golgi network membrane
GO:0033107 GO:0016023 MAH D CVT vesicle
GO:0055035 GO:0009536 AI D plastid thylakoid membrane
GO:0009579
GO:0055036 GO:0005575 AI D virion membrane
GO:0055037 GO:0005768 AI D recycling endosome
GO:0055038 GO:0005768 AI D recycling endosome membrane
GO:0055039 GO:0005576 AI D trichocyst
GO:0043226
GO:0055040 GO:0005623 AI D 1681353 periplasmic flagellum
GO:0055044 GO:0005575 AI D symplast
GO:0060076 GO:0005575 AI D excitatory synapse
GO:0060077 GO:0005575 AI D inhibitory synapse
Term name changes in cellular_component ontology
GO:0000324: vacuole (sensu Fungi) --> vacuole, cell cycle-correlated morphology
GO:0000325: vacuole (sensu Magnoliophyta) --> vacuole, cell cycle independent morphology
GO:0000328: vacuolar lumen (sensu Fungi) --> lumen of vacuole with cell cycle-correlated morphology
GO:0000329: vacuolar membrane (sensu Fungi) --> membrane of vacuole with cell cycle-correlated morphology
GO:0000330: vacuolar lumen (sensu Magnoliophyta) --> lumen of vacuole with cell cycle-independent morphology
GO:0005675: transcription factor TFIIH complex --> holo TFIIH complex
GO:0005746: mitochondrial electron transport chain --> mitochondrial respiratory chain
GO:0005757: mitochondrial permeability transition pore --> mitochondrial permeability transition pore complex
GO:0005801: Golgi cis face --> cis-Golgi network
GO:0005802: Golgi trans face --> trans-Golgi network
GO:0009275: 20-80nm peptidoglycan-containing cell wall --> 20-80nm peptidoglycan-based cell wall
GO:0009276: 1-2nm peptidoglycan-containing cell wall --> 1-2nm peptidoglycan-based cell wall
GO:0009705: vacuolar membrane (sensu Magnoliophyta) --> membrane of vacuole with cell cycle-independent morphology
GO:0016456: dosage compensation complex (sensu Insecta) --> X chromosome located dosage compensation complex, transcription activating
New definitions for cellular_component ontology terms (1 new definitions)
GO:0005757, mitochondrial permeability transition pore complex
New term merges in cellular_component ontology
GO:0045279 has been merged into GO:0045271, respiratory chain complex I
Term movements in cellular_component ontology:
Terms movements under GO Slim term 'extracellular space ; GO:0005615'
- GO:0043033, isoamylase complex
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0000172, ribonuclease MRP complex
- GO:0012506, vesicle membrane
- GO:0031090, organelle membrane
+ GO:0032420, stereocilium
Terms movements under GO Slim term 'cell ; GO:0005623'
+ GO:0012506, vesicle membrane
+ GO:0031090, organelle membrane
- GO:0032420, stereocilium
Terms movements under GO Slim term 'chromosome ; GO:0005694'
+ GO:0016456, X chromosome located dosage compensation complex, transcription activating
+ GO:0046536, dosage compensation complex
Terms movements under GO Slim term 'nucleolus ; GO:0005730'
- GO:0000172, ribonuclease MRP complex
Terms movements under GO Slim term 'endoplasmic reticulum ; GO:0005783'
+ GO:0009510, plasmodesmatal desmotubule
+ GO:0009572, desmotubule central rod
Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
+ GO:0005863, striated muscle thick filament
Terms movements under GO Slim term 'organelle ; GO:0043226'
+ GO:0032420, stereocilium
Terms movements under GO Slim term 'protein complex ; GO:0043234'
- GO:0000172, ribonuclease MRP complex
+ GO:0000311, plastid large ribosomal subunit
+ GO:0000312, plastid small ribosomal subunit
+ GO:0000314, organellar small ribosomal subunit
+ GO:0000315, organellar large ribosomal subunit
- GO:0000333, telomerase catalytic core complex
- GO:0005655, nucleolar ribonuclease P complex
- GO:0005681, spliceosome
- GO:0005682, snRNP U5
- GO:0005683, snRNP U7
- GO:0005684, U2-dependent spliceosome
- GO:0005685, snRNP U1
- GO:0005686, snRNP U2
- GO:0005687, snRNP U4
- GO:0005688, snRNP U6
- GO:0005689, U12-dependent spliceosome
- GO:0005690, snRNP U4atac
- GO:0005691, snRNP U6atac
- GO:0005692, snRNP U11
- GO:0005693, snRNP U12
- GO:0005697, telomerase holoenzyme complex
- GO:0005732, small nucleolar ribonucleoprotein complex
+ GO:0005762, mitochondrial large ribosomal subunit
+ GO:0005763, mitochondrial small ribosomal subunit
- GO:0005786, signal recognition particle, endoplasmic reticulum targeting
- GO:0005840, ribosome
+ GO:0005842, cytosolic large ribosomal subunit (sensu Eukaryota)
+ GO:0005843, cytosolic small ribosomal subunit (sensu Eukaryota)
- GO:0005844, polysome
+ GO:0005863, striated muscle thick filament
+ GO:0009282, cytosolic large ribosomal subunit (sensu Bacteria)
+ GO:0009283, cytosolic small ribosomal subunit (sensu Bacteria)
+ GO:0015934, large ribosomal subunit
+ GO:0015935, small ribosomal subunit
- GO:0030529, ribonucleoprotein complex
- GO:0030530, heterogeneous nuclear ribonucleoprotein complex
- GO:0030531, small cytoplasmic ribonucleoprotein complex
- GO:0030532, small nuclear ribonucleoprotein complex
- GO:0030677, ribonuclease P complex
- GO:0030678, mitochondrial ribonuclease P complex
- GO:0030679, cyanelle ribonuclease P complex
- GO:0030680, dimeric ribonuclease P complex
- GO:0030681, multimeric ribonuclease P complex
- GO:0030684, preribosome
- GO:0030685, nucleolar preribosome
- GO:0030686, 90S preribosome
- GO:0030687, nucleolar preribosome, large subunit precursor
- GO:0030688, nucleolar preribosome, small subunit precursor
+ GO:0030872, cytosolic large ribosomal subunit (sensu Archaea)
+ GO:0030873, cytosolic small ribosomal subunit (sensu Archaea)
- GO:0031428, box C/D snoRNP complex
- GO:0031429, box H/ACA snoRNP complex
- GO:0032040, small subunit processome
- GO:0035068, micro-ribonucleoprotein complex
- GO:0046540, U4/U6 x U5 tri-snRNP complex
- GO:0048500, signal recognition particle
- GO:0048501, signal recognition particle, plasma membrane targeting
New terms in molecular_function ontology (20 new terms)
GO:0010347 GO:0016787 TAIR D L-galactose-1-phosphate phosphatase activity
GO:0010348 GO:0005215 TAIR D lithium:hydrogen antiporter activity
GO:0010349 GO:0003824 TAIR D L-galactose dehydrogenase activity
GO:0010354 GO:0016740 TAIR D homogentisate prenyltransferase activity
GO:0010355 GO:0016740 TAIR D homogentisate farnesyltransferase activity
GO:0010356 GO:0016740 TAIR D homogentisate geranylgeranyltransferase activity
GO:0010357 GO:0016740 TAIR D homogentisate solanesyltransferase activity
GO:0033019 GO:0003824 MAH D 5-hydroxyvalerate dehydrogenase activity
GO:0033038 GO:0004872 MAH D bitter taste receptor activity
GO:0033039 GO:0004872 MAH D salty taste receptor activity
GO:0033040 GO:0004872 MAH D sour taste receptor activity
GO:0033041 GO:0004872 MAH D sweet taste receptor activity
GO:0033042 GO:0004872 MAH D umami taste receptor activity
GO:0033094 GO:0016740 MAH D putrescine aminotransferase activity
GO:0055041 GO:0003824 AI D cyclopentanol dehydrogenase activity
GO:0055042 GO:0016787 AI D 5-valerolactone hydrolase activity
GO:0055043 GO:0003824 AI D 5-oxovalerate dehydrogenase activity
GO:0060072 GO:0005216 AI D large conductance calcium-activated potassium channel activity
GO:0060089 GO:0003674 AI D molecular transducer activity
GO:0060090 GO:0005488 AI D molecular adaptor activity
Term name changes in molecular_function ontology
GO:0010309: acireductone dioxygenase (Fe2+-requiring) activity --> acireductone dioxygenase [iron(II)-requiring] activity
GO:0016303: phosphatidylinositol 3-kinase activity --> 1-phosphatidylinositol-3-kinase activity
GO:0016490: structural constituent of peritrophic membrane (sensu Insecta) --> structural constituent of peritrophic membrane
GO:0060001: minus-end directed actin-filament motor activity --> minus-end directed microfilament motor activity
GO:0060002: plus-end directed actin-filament motor activity --> plus-end directed microfilament motor activity
New definitions for molecular_function ontology terms (13 new definitions)
GO:0005068, transmembrane receptor protein tyrosine kinase adaptor protein activity
GO:0005091, guanyl-nucleotide exchange factor adaptor activity
GO:0005092, GDP-dissociation inhibitor activity
GO:0005093, Rab GDP-dissociation inhibitor activity
GO:0005094, Rho GDP-dissociation inhibitor activity
GO:0005227, calcium activated cation channel activity
GO:0005253, anion channel activity
GO:0005261, cation channel activity
GO:0008093, cytoskeletal adaptor activity
GO:0008269, JAK pathway signal transduction adaptor activity
GO:0015269, calcium-activated potassium channel activity
GO:0017077, oxidative phosphorylation uncoupler activity
GO:0017107, anion exchanger adaptor activity
Term movements in molecular_function ontology:
Terms movements under GO Slim term 'molecular_function ; GO:0003674'
- GO:0030533, triplet codon-amino acid adaptor activity
Terms movements under GO Slim term 'binding ; GO:0005488'
+ GO:0005068, transmembrane receptor protein tyrosine kinase adaptor protein activity
+ GO:0005091, guanyl-nucleotide exchange factor adaptor activity
+ GO:0008269, JAK pathway signal transduction adaptor activity
+ GO:0017107, anion exchanger adaptor activity
+ GO:0030533, triplet codon-amino acid adaptor activity
SourceForge items closed this month:
SF id Resolution SF item title GO ids added, if any
1450625 Later Child terms for apoptosis
1468589 Accepted NTR: cyanophycin metabolism
1469441 Accepted new metabolism terms for kegg orthology2go
1475520 Fixed ntr: trans Golgi network
1483728 None Synaptic maturation
1483863 None resting potential
1484510 Accepted kainate receptor complex
1490140 Fixed def required & parent query amino acid-polyamine transporter
1493565 Accepted ntr: XRCC2-RAD51D complex
1501089 None Excitatory postsynaptic potential
1501514 None excitatory and inhibitory synapse
1518671 None rg: query: error-free DNA repair
1522488 Accepted granule clustering
1542601 Works For Me rg: mp: DNA repair
1602359 Accepted rg:Bcl3-Bcl10 complex
1604541 Accepted ntr:mitotic sister chromatid separation, regulation terms
1614006 Accepted ribosome disassembly
1614815 Accepted short-chain fatty acid, child terms
1619621 Accepted myosin filament
1620478 Fixed modifications to 'secondary shoot formation'
1630694 None ntr: Spemann organizer formation
1631510 None translation primary ID
1631772 Accepted cortical resistance
1635850 Fixed mp: nucleotide-excision repair factor 3 complex
1636093 None ntr: actin-filament motor activity
1642843 Fixed protein secretion vs. secretory pathway
1645569 Accepted children of abscisic acid catabolism (GO:0046345)
1648000 Fixed mitochondrial pore complex
1652439 Accepted ntr: astral microtubule stability
1652533 Accepted New divisions for 'protein modification'
1653166 Accepted photosynthetic water oxidation.
1653692 Accepted correction: isoamylase complex
1659926 Accepted regulation terms required
1660096 Accepted new term and synonym: perinucleolar chromocenter
1661774 Works For Me mp: GO:0009009 : site-specific recombinase activity
1661969 Accepted fix parentage: embryo sac morphogenesis
1666130 Works For Me Question:DNA synthesis during DNA repair
1667284 None embryonic & post embryonic retina morphogenesis terms
1667576 Accepted new term: regulation of gibberellin biosynthetic process
1669228 Accepted tumor necrosis factor terms in BP
1669266 Accepted Keratinocyte activation
1669385 None use cardiac as synonym for heart
1669893 Accepted enzyme - phosphatase activity as synonym
1670192 Accepted new term: suberin biosynthesis
1670702 Fixed problem introduced by sensu revamp/cellularization
1670707 None reproduction/reproductive process
1671734 Accepted rg:NTR: Mitochondrial Complex I assembly
1672026 Duplicate response to genotoxic stress
1672068 Accepted new term: regulation of hypersensitive response
1672084 Accepted new term: regulation of ethylene biosynthetic process
1674129 Accepted rg: New: myocyte proliferation
1674164 None rg:mullerian tract development
1674246 None name change for GO:0015721 bile acid transport
1674360 Accepted Fc receptor complex terms
1675235 Accepted Regulation terms for mast cell activation
1675622 Accepted NTR: Nucleomorph
1675643 Accepted NTR: Paranodal junction
1675684 Accepted NTR: Perinuclear theca
1675925 None canonical & non-canonical wnt signaling
1676054 Accepted Mast cell/neutrophil apoptosis terms
1676208 Accepted gamma-aminobutyrate shunt
1676630 Accepted NTR: Porosome
1676653 Fixed RNase MRP location
1676674 None frizzled/frizzled-2 terms
1677042 Accepted Tetrapyrrole Biosynthesis
1677044 Accepted dipyrromethane binding
1677293 Accepted NTR: Rhoptry membrane
1677405 Accepted NTR: Sarcoplasmic reticulum lumen/membrane
1679049 None large-conductance calcium activated potassium channel
1679053 Accepted ntr: 5-hydroxyvalerate dehydrogenase
1679163 Accepted definition for oxidative phosphorylation uncoupler activity
1679392 Accepted new term: leaf shaping
1679401 Accepted new term; L-galactose-1-phosphate phosphatase activity
1679406 Accepted new term: lithium:hydrogen antiporter activity
1679722 Works For Me GO term for EC 3.4.22.- ?
1679785 None NTR: micturition
1679814 Accepted ER overload response and stress
1680043 Accepted 4 new terms: homogentisate prenyltransferase activity etc
1680066 Accepted new term: cellular response to magnesium starvation
1680075 Accepted new term: response to trehalose stimulus
1680079 Accepted new term: L-galactose dehydrogenase activity
1680187 Accepted new terms: lithium ion transport, lithium ion export
1680241 Accepted new term: negative regulation of anion channel activity
1680678 None ntr: eye blink reflex
1680707 None Children of micturition
1680745 None NTR: circadian thermoregulation
1680797 None NTR: relaxation of vascular smooth muscle
1680932 Accepted more steps in the cyclopentanol degradation pathway
1681299 Accepted NTR: Symplast
1681306 Accepted NTR: Trichocyst
1681321 Accepted NTR: Virion membrane
1681323 Accepted NTR: Plastid thylakoid membrane
1681470 Accepted NTR: Recycling endosome/membrane
1681629 Accepted new terms: stomatal complex development, patterning
1682060 Accepted MP: septation iniitation signalling
1684437 None NTR: stereocilium organization and biogenesis
1685086 Accepted specific taste receptor activity terms
1685840 Fixed is a complete project? inc par: actin cortical patch localiz
1686758 Fixed URGENT!!!!! priority 1
1686961 Fixed 1-phosphatidylinositol-3-phosphate 5-kinase
1687129 Accepted New terms for T cell differentiation
1687191 Accepted New term: temperature compensation of the circadian clock
1688499 Accepted NTR: Weibel-Palade body
1688510 Accepted acidocalcisome membrane
1688723 Accepted ntr: type VI secretion
1688732 Accepted ntr: putrescine aminotransferase
1689072 Accepted aleurone body
1689098 Accepted Amyloplast membrane
1689314 Accepted attachment organelle
1689492 Accepted NTR: NuA3 histone acetyltransferase complex
1689724 Accepted bud membrane
1689784 Accepted chlorosome envelope
1689802 Accepted Golgi cis face membrane
1690007 Accepted cvt vesicle
1690496 Accepted ntr: mitochondrial respiratory chain complex assembly
1690807 Fixed incorrect parent for 'embryonic morphogenesis'
839253 Works For Me rg: DNA repair function terms in process
934950 None translesion synthesis / DNA repair
Statistics:
biological_process: 13867 terms, 98.6% defined (13678 terms defined)
cellular_component: 2038 terms, 97.4% defined (1984 terms defined)
molecular_function: 8092 terms, 93.0% defined (7522 terms defined)
Total: 23997 terms, 96.6% defined (23184 terms defined)
Term errors
GO:0032684, negative regulation of fractalkine production
- definition removed