GO Monthly Release Notes for January 2005
========================
Generated on Mon Mar  7 15:03:05 2005

Files used:
gene_ontology.obo
OLD: version 3.688, 23:12:2004 14:08
NEW: version 3.743, 31:01:2005 17:22
goslim_generic

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
				 (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in biological_process ontology (136 new terms)
GO:0001941	GO:0016043	MGI	D	1035336	postsynaptic membrane organization
GO:0010228	GO:0007275	TAIR	D	1085967	vegetative to reproductive phase transition
GO:0010229	GO:0007275	TAIR	D	1085967	inflorescence development
GO:0010230	GO:0006091	TAIR	D	1035336	alternative respiration
GO:0010231	GO:0007275	TAIR	D	1035336	maintenance of dormancy
         	GO:0007582
GO:0010232	GO:0007582	TAIR	D	1035336	vascular transport
GO:0010233	GO:0007582	TAIR	D	1035336	phloem transport
GO:0010234	GO:0030154	TAIR	D	1035336	tapetal cell fate specification
GO:0010235	GO:0008283	TAIR	D	1035336	guard mother cell cytokinesis
GO:0010236	GO:0009058	TAIR	D	1035336	plastoquinone biosynthesis
GO:0010237	GO:0009719	TAIR	D	1035336	response to amino acid stimulus
GO:0010238	GO:0009719	TAIR	D	1035336	response to proline
GO:0010239	GO:0006139	TAIR	D	1035336	chloroplast mRNA processing
GO:0031098	GO:0007165	MAH	D	1076778	stress-activated protein kinase signaling pathway
GO:0031099	GO:0009653	MAH	D	1077149	regeneration
GO:0031100	GO:0009653	MAH	D	1077149	organ regeneration
GO:0031101	GO:0006950	MAH	D	1077149	fin regeneration
         	GO:0009605
         	GO:0009653
         	GO:0040007
GO:0031102	GO:0006950	MAH	D	1077149	neurite regeneration
         	GO:0009605
         	GO:0009653
         	GO:0040007
GO:0031103	GO:0006950	MAH	D	1077149	axon regeneration
         	GO:0009605
         	GO:0009653
         	GO:0040007
GO:0031104	GO:0006950	MAH	D	1077149	dendrite regeneration
         	GO:0009605
         	GO:0009653
         	GO:0040007
GO:0031106	GO:0008283	MAH	D	1079966	septin ring organization
GO:0031107	GO:0008283	MAH	D	1079966	septin ring disassembly
GO:0031108	GO:0006412	MAH	D	1095935	holo-[acyl-carrier protein] biosynthesis
GO:0031109	GO:0007010	MAH	D	1081271	microtubule polymerization or depolymerization
GO:0031110	GO:0007010	MAH	D	1081271	regulation of microtubule polymerization or depolymerization
GO:0031111	GO:0007010	MAH	D	1081271	negative regulation of microtubule polymerization or depolymerization
GO:0031112	GO:0007010	MAH	D	1081271	positive regulation of microtubule polymerization or depolymerization
GO:0031113	GO:0007010	MAH	D	1081271	regulation of microtubule polymerization
         	GO:0019538
GO:0031114	GO:0007010	MAH	D	1081271	regulation of microtubule depolymerization
         	GO:0019538
GO:0031115	GO:0007010	MAH	D	1081271	negative regulation of microtubule polymerization
         	GO:0019538
GO:0031116	GO:0007010	MAH	D	1081271	positive regulation of microtubule polymerization
         	GO:0019538
GO:0031117	GO:0007010	MAH	D	1081271	positive regulation of microtubule depolymerization
         	GO:0019538
GO:0031118	GO:0006139	MAH	D	949417	rRNA pseudouridine synthesis
GO:0031119	GO:0006139	MAH	D	949417	tRNA pseudouridine synthesis
GO:0031120	GO:0006139	MAH	D	949417	snRNA pseudouridine synthesis
GO:0031121	GO:0007010	MAH	D	1097959	equatorial microtubule organization and biogenesis
GO:0031122	GO:0007010	MAH	D	1097959	cytoplasmic microtubule organization and biogenesis
GO:0031123	GO:0006139	MAH	D	837124	RNA 3'-end processing
GO:0031124	GO:0006139	MAH	D	837124	mRNA 3'-end processing
GO:0031125	GO:0006139	MAH	D	837124	rRNA 3'-end processing
         	GO:0006996
         	GO:0007028
GO:0031126	GO:0006139	MAH	D	837124	snoRNA 3'-end processing
GO:0031128	GO:0007267	MAH	D	944051	induction
         	GO:0030154
GO:0031129	GO:0007267	MAH	D	944051	inductive cell-cell signaling
         	GO:0030154
GO:0031130	GO:0007267	MAH	D	944051	creation of an inductive signal
         	GO:0030154
GO:0031131	GO:0007267	MAH	D	944051	reception of an inductive signal
         	GO:0030154
GO:0031133	GO:0009653	MAH	D	1102393	regulation of axon diameter
GO:0031134	GO:0007010	MAH	D	1098538	sister chromatid biorientation
         	GO:0007049
GO:0031135	GO:0000003	MAH	D	1077611	negative regulation of conjugation
         	GO:0007582
GO:0031136	GO:0000003	MAH	D	1077611	positive regulation of conjugation
         	GO:0007582
GO:0031137	GO:0000003	MAH	D	1077611	regulation of conjugation with cellular fusion
         	GO:0007582
GO:0031138	GO:0000003	MAH	D	1077611	negative regulation of conjugation with cellular fusion
         	GO:0007582
GO:0031139	GO:0000003	MAH	D	1077611	positive regulation of conjugation with cellular fusion
         	GO:0007582
GO:0031140	GO:0000003	MAH	D	1077611	induction of conjugation upon nutrient starvation
         	GO:0007582
GO:0031141	GO:0000003	MAH	D	1077611	induction of conjugation upon carbon starvation
         	GO:0007582
GO:0031142	GO:0000003	MAH	D	1077611	induction of conjugation upon nitrogen starvation
         	GO:0006950
         	GO:0007154
         	GO:0009605
GO:0031144	GO:0007582	MAH	D	1104483	proteasome localization
GO:0031145	GO:0009056	MAH	D	1104483	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism
         	GO:0019538
GO:0031146	GO:0009056	MAH	D	1104483	SCF-dependent proteasomal ubiquitin-dependent protein catabolism
         	GO:0019538
GO:0031147	GO:0008152	MAH	D	1105378	1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] metabolism
GO:0031148	GO:0009058	MAH	D	1105378	1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] biosynthesis
GO:0031149	GO:0006950	MAH	D	1105378	stalk cell differentiation
         	GO:0009605
         	GO:0030154
GO:0031150	GO:0006950	MAH	D	1105378	stalk formation (sensu Dictyosteliida)
         	GO:0007275
         	GO:0009605
GO:0031152	GO:0006950	MAH	D	1104246	aggregation during fruiting body formation
         	GO:0007275
         	GO:0009605
GO:0031153	GO:0006950	MAH	D	1104246	slug formation during fruiting body formation
         	GO:0007275
         	GO:0009605
GO:0031154	GO:0006950	MAH	D	1104246	culmination during fruiting body formation
         	GO:0007275
         	GO:0009605
GO:0031155	GO:0007275	MAH	D	1104246	regulation of fruiting body formation
GO:0031156	GO:0006950	MAH	D	1104246	regulation of fruiting body formation (sensu Dictyosteliida)
         	GO:0007275
         	GO:0009605
GO:0031157	GO:0006950	MAH	D	1104246	regulation of aggregate size
         	GO:0007275
         	GO:0009605
GO:0031158	GO:0006950	MAH	D	1104246	negative regulation of aggregate size
         	GO:0007275
         	GO:0009605
GO:0031159	GO:0006950	MAH	D	1104246	positive regulation of aggregate size
         	GO:0007275
         	GO:0009605
GO:0031161	GO:0006629	MAH	D	1111084	phosphatidylinositol catabolism
GO:0035313	GO:0006950	FB	D	1089145	wound healing, spreading of epidermal cells
         	GO:0009605
GO:0035314	GO:0006950	FB	D	1089145	scab formation
         	GO:0009605
GO:0035315	GO:0009653	FB	D	956691	hair cell differentiation
         	GO:0030154
GO:0035316	GO:0009653	FB	D	956691	trichome organization and biogenesis (sensu Insecta)
         	GO:0016043
         	GO:0030154
GO:0035317	GO:0009653	FB	D	956691	wing hair organization and biogenesis
         	GO:0016043
         	GO:0030154
GO:0035318	GO:0009653	FB	D	956691	wing hair outgrowth
         	GO:0016043
         	GO:0030154
GO:0035319	GO:0009653	FB	D	956691	wing hair elongation
         	GO:0016043
         	GO:0030154
GO:0035320	GO:0007010	FB	D	956691	wing hair site selection
         	GO:0009653
         	GO:0030154
GO:0035321	GO:0009653	FB	D	1035336	maintenance of wing hair orientation
         	GO:0016043
         	GO:0030154
GO:0042000	GO:0007582	WB	D	965023	translocation of peptides or proteins into host
GO:0043297	GO:0007028	JL	D	1035336	apical junction assembly
         	GO:0019538
GO:0043298	GO:0007582	JL		965023	symbiotic interaction with other, non-host organism
GO:0044000	GO:0007582	JL	D	965023	movement within host
GO:0044001	GO:0007582	JL	D	965023	migration within host
GO:0044002	GO:0007582	JL	D	965023	acquisition of nutrients from host
GO:0044003	GO:0007582	JL	D	965023	modification of host morphology or physiology
GO:0044004	GO:0007582	JL	D	965023	disruption of host cells
GO:0044005	GO:0007582	JL	D	965023	induction in host of a tumor, nodule, or growth
GO:0044006	GO:0007582	JL	D	965023	induction in host of a tumor, nodule, or growth containing transformed cells
GO:0044007	GO:0007582	JL	D	965023	dissemination or transmission of an organism from a host
GO:0044008	GO:0007582	JL	D	965023	dissemination or transmission of an organism from a host by a vector
GO:0044009	GO:0007582	JL	D	965023	viral transmission by a vector
         	GO:0016032
GO:0044010	GO:0007154	JL	D	965023	single-species biofilm formation
GO:0044011	GO:0007154	JL	D	965023	single-species biofilm formation on inanimate substrate
GO:0044399	GO:0007154	JL	D	965023	multi-species biofilm formation
         	GO:0007582
GO:0044400	GO:0007154	JL	D	965023	multi-species biofilm formation on inanimate substrate
         	GO:0007582
GO:0044401	GO:0007154	JL	D	965023	multi-species biofilm formation in or on host organism
         	GO:0007582
GO:0044402	GO:0007582	JL	D	965023	competition with other, non-host, organism
GO:0044403	GO:0007582	JL	D	965023	symbiosis, mutualism through parasitism
GO:0044404	GO:0007582	JL	D	965023	symbiotic interaction between host and other organism
GO:0044405	GO:0007582	JL	D	965023	recognition of host
GO:0044406	GO:0007582	JL	D	965023	adhesion to host
GO:0044407	GO:0007154	JL	D	965023	single-species biofilm formation in or on host organism
         	GO:0007582
GO:0044408	GO:0007582	JL	D	965023	growth on or near host surface
GO:0044409	GO:0007582	JL	D	965023	entry into host
GO:0044410	GO:0007582	JL	D	965023	entry into host through natural portals
GO:0044411	GO:0007582	JL	D	965023	entry into host through host barriers
GO:0044412	GO:0007582	JL	D	965023	growth within host
GO:0044413	GO:0007582	JL	D	965023	avoidance of host defenses
GO:0044414	GO:0007582	JL	D	965023	suppression of host defenses
GO:0044415	GO:0007582	JL	D	965023	evasion of host defenses
GO:0044416	GO:0007582	JL	D	965023	induction of host defense response
GO:0044417	GO:0007582	JL	D	965023	translocation of molecules into host
GO:0044418	GO:0007582	JL	D	965023	translocation of DNA into host
GO:0044419	GO:0007582	JL	D	965023	interaction between organisms
GO:0048515	GO:0000003	JIC	D	1035336	spermatid cell differentiation
         	GO:0030154
GO:0051278	GO:0005975	AI	D	1075880	cell wall polysaccharide biosynthesis (sensu Fungi)
         	GO:0009058
         	GO:0016043
GO:0051279	GO:0019725	AI	D	1097501	regulation of release of sequestered calcium ion into cytoplasm
GO:0051280	GO:0019725	AI	D	1097501	negative regulation of release of sequestered calcium ion into cytoplasm
GO:0051281	GO:0019725	AI	D	1097501	positive regulation of release of sequestered calcium ion into cytoplasm
GO:0051282	GO:0019725	AI	D	1097501	regulation of sequestering of calcium ion
GO:0051283	GO:0019725	AI	D	1097501	negative regulation of sequestering of calcium ion
GO:0051284	GO:0019725	AI	D	1097501	positive regulation of sequestering of calcium ion
GO:0051289	GO:0019538	AI	D	1108665	protein homotetramerization
GO:0051290	GO:0019538	AI	D	1108694	protein heterotetramerization
GO:0051291	GO:0019538	AI	D	1108694	protein heterooligomerization
GO:0051292	GO:0016043	AI	D	      	nuclear pore complex assembly
GO:0051293	GO:0007010	AI	D	      	establishment of spindle localization
GO:0051294	GO:0007010	AI	D	      	establishment of spindle orientation
GO:0051295	GO:0007010	AI	D	      	establishment of meiotic spindle localization
GO:0051296	GO:0007010	AI	D	      	establishment of meiotic spindle orientation
GO:0051297	GO:0007010	AI	D	      	centrosome organization and biogenesis
GO:0051298	GO:0007010	AI	D	      	centrosome duplication
GO:0051299	GO:0007010	AI	D	      	centrosome separation
         	GO:0007049
GO:0051300	GO:0007010	AI	D	      	spindle pole body organization and biogenesis


New obsoletions in biological_process ontology
GO:0001404, invasive growth: more appropriate terms were created.
GO:0008220, necrosis: the term has been used in the literature by groups in different areasnof biology with a number of varying explicit and implicit definitions, and more appropriate terms were created.
GO:0030383, host-pathogen interaction: more appropriate terms were created.


Term name changes in biological_process ontology
GO:0000132: mitotic spindle orientation --> establishment of mitotic spindle orientation
GO:0001649: osteoblast differentiation --> osteoblast cell differentiation
GO:0001742: oenocyte differentiation --> oenocyte cell differentiation
GO:0001751: eye photoreceptor differentiation (sensu Endopterygota) --> eye photoreceptor cell differentiation (sensu Endopterygota)
GO:0007026: microtubule stabilization --> negative regulation of microtubule depolymerization
GO:0007204: cytosolic calcium ion concentration elevation --> positive regulation of cytosolic calcium ion concentration
GO:0007256: activation of JUNKK --> activation of JNKK
GO:0007257: activation of JUNK --> activation of JNK
GO:0007286: spermatid development --> spermatid cell development
GO:0007467: photoreceptor differentiation (sensu Endopterygota) --> photoreceptor cell differentiation (sensu Endopterygota)
GO:0008377: light-induced release of internally sequestered calcium ion (Ca2+) --> light-induced release of internally sequestered calcium ion
GO:0008535: cytochrome c oxidase biogenesis --> cytochrome c oxidase complex assembly
GO:0009448: aminobutyrate metabolism --> gamma-aminobutyric acid metabolism
GO:0009449: aminobutyrate biosynthesis --> gamma-aminobutyric acid biosynthesis
GO:0009450: aminobutyrate catabolism --> gamma-aminobutyric acid catabolism
GO:0009780: NADP+ reduction --> photosynthetic NADP+ reduction
GO:0009994: oocyte differentiation --> oocyte cell differentiation
GO:0010002: cardioblast differentiation --> cardioblast cell differentiation
GO:0010026: trichome differentiation (sensu Magnoliophyta) --> trichome cell differentiation (sensu Magnoliophyta)
GO:0010054: trichoblast differentiation --> trichoblast cell differentiation
GO:0010190: cytochrome b6f complex biogenesis --> cytochrome b6f complex assembly
GO:0015812: gamma-aminobutyrate transport --> gamma-aminobutyric acid transport
GO:0017004: cytochrome biogenesis --> cytochrome complex assembly
GO:0017062: cytochrome bc(1) complex biogenesis --> cytochrome bc(1) complex assembly
GO:0030098: lymphocyte differentiation --> lymphocyte cell differentiation
GO:0030182: neuron differentiation --> neuron cell differentiation
GO:0030216: keratinocyte differentiation --> keratinocyte cell differentiation
GO:0030218: erythrocyte differentiation --> erythrocyte cell differentiation
GO:0030219: megakaryocyte differentiation --> megakaryocyte cell differentiation
GO:0030221: basophil differentiation --> basophil cell differentiation
GO:0030222: eosinophil differentiation --> eosinophil cell differentiation
GO:0030223: neutrophil differentiation --> neutrophil cell differentiation
GO:0030224: monocyte differentiation --> monocyte cell differentiation
GO:0030225: macrophage differentiation --> macrophage cell differentiation
GO:0030260: cell invasion --> entry into host cell
GO:0030316: osteoclast differentiation --> osteoclast cell differentiation
GO:0030318: melanocyte differentiation --> melanocyte cell differentiation
GO:0030706: oocyte differentiation (sensu Insecta) --> oocyte cell differentiation (sensu Insecta)
GO:0030713: stalk formation --> stalk formation (sensu Insecta)
GO:0030851: granulocyte differentiation --> granulocyte cell differentiation
GO:0035163: embryonic hemocyte differentiation (sensu Arthropoda) --> embryonic hemocyte cell differentiation (sensu Arthropoda)
GO:0035164: embryonic plasmatocyte differentiation --> embryonic plasmatocyte cell differentiation
GO:0035168: lymph gland hemocyte differentiation (sensu Arthropoda) --> lymph gland hemocyte cell differentiation (sensu Arthropoda)
GO:0035169: lymph gland plasmatocyte differentiation --> lymph gland plasmatocyte cell differentiation
GO:0035171: lamellocyte differentiation --> lamellocyte cell differentiation
GO:0040001: mitotic spindle positioning or orientation --> establishment of mitotic spindle localization
GO:0042655: activation of JUNKKK --> activation of JNKKK
GO:0043158: heterocyst differentiation --> heterocyst cell differentiation
GO:0045444: adipocyte differentiation --> adipocyte cell differentiation
GO:0045445: myoblast differentiation --> myoblast cell differentiation
GO:0045465: R8 differentiation --> R8 cell differentiation
GO:0045466: R7 differentiation --> R7 cell differentiation
GO:0046652: thymocyte differentiation --> thymocyte cell differentiation
GO:0046718: viral entry --> viral entry into host cell
GO:0048052: R1/R6 differentiation (sensu Endopterygota) --> R1/R6 cell differentiation (sensu Endopterygota)
GO:0048054: R2/R5 differentiation (sensu Endopterygota) --> R2/R5 cell differentiation (sensu Endopterygota)
GO:0048056: R3/R4 differentiation (sensu Endopterygota) --> R3/R4 cell differentiation (sensu Endopterygota)
GO:0048312: mitochondrion positioning within the cell --> mitochondrion positioning within cell
GO:0048510: regulation of timing of transition to inflorescence phase --> regulation of timing of transition from vegetative to reproductive phase
GO:0050872: white adipocyte differentiation --> white adipocyte cell differentiation
GO:0050873: brown adipocyte differentiation --> brown adipocyte cell differentiation
GO:0050933: early stripe melanocyte differentiation --> early stripe melanocyte cell differentiation
GO:0050934: late stripe melanocyte differentiation --> late stripe melanocyte cell differentiation
GO:0050935: iridophore differentiation --> iridophore cell differentiation
GO:0050936: xanthophore differentiation --> xanthophore cell differentiation


New definitions for biological_process ontology terms (20 new definitions)
GO:0006367, transcription initiation from Pol II promoter
GO:0006379, mRNA cleavage
GO:0006398, histone mRNA 3'-end processing
GO:0006463, steroid hormone receptor complex assembly
GO:0007092, anaphase-promoting complex activation
GO:0007204, positive regulation of cytosolic calcium ion concentration
GO:0008535, cytochrome c oxidase complex assembly
GO:0009557, antipodal cell differentiation
GO:0009559, female gametophyte central cell differentiation
GO:0009563, synergid cell differentiation
GO:0009564, formation of generative and vegetative cell
GO:0009762, NADP-malic enzyme C4 photosynthesis
GO:0009763, NAD-malic enzyme C4 photosynthesis
GO:0009764, PEP carboxykinase C4 photosynthesis
GO:0009780, photosynthetic NADP+ reduction
GO:0009781, photosynthetic water oxidation
GO:0017156, calcium ion-dependent exocytosis
GO:0042060, wound healing
GO:0042243, spore wall assembly (sensu Bacteria)
GO:0042244, spore wall assembly


New term merges in biological_process ontology
GO:0018986 has been merged into GO:0040001, establishment of mitotic spindle localization
GO:0030044 has been merged into GO:0030835, negative regulation of actin filament depolymerization
GO:0030045 has been merged into GO:0030836, positive regulation of actin filament depolymerization
GO:0030606 has been merged into GO:0040001, establishment of mitotic spindle localization
GO:0030608 has been merged into GO:0040001, establishment of mitotic spindle localization
GO:0046616 has been merged into GO:0007576, nucleolar fragmentation
GO:0048271 has been merged into GO:0010026, trichome cell differentiation (sensu Magnoliophyta)
GO:0048272 has been merged into GO:0010090, trichome morphogenesis (sensu Magnoliophyta)
GO:0048274 has been merged into GO:0010091, trichome branching (sensu Magnoliophyta)


Term movements in biological_process ontology:
Terms movements under GO Slim term 'transport ; GO:0006810'
- GO:0015892, iron-siderochrome transport

Terms movements under GO Slim term 'ion transport ; GO:0006811'
+ GO:0015892, iron-siderochrome transport

Terms movements under GO Slim term 'response to stress ; GO:0006950'
+ GO:0007596, blood coagulation
+ GO:0007597, blood coagulation, intrinsic pathway
+ GO:0007598, blood coagulation, extrinsic pathway
+ GO:0030168, platelet activation
+ GO:0030193, regulation of blood coagulation
+ GO:0030194, positive regulation of blood coagulation
+ GO:0030195, negative regulation of blood coagulation
+ GO:0030996, cell cycle arrest in response to nitrogen starvation
+ GO:0042730, fibrinolysis

Terms movements under GO Slim term 'cell cycle ; GO:0007049'
- GO:0000132, establishment of mitotic spindle orientation
- GO:0040001, establishment of mitotic spindle localization

Terms movements under GO Slim term 'cell communication ; GO:0007154'
- GO:0001759, induction of an organ
+ GO:0019062, virion attachment
+ GO:0019063, virion penetration
+ GO:0019064, viral envelope fusion
+ GO:0019065, viral receptor mediated endocytosis
+ GO:0019066, viral translocation
+ GO:0020035, cytoadherence to microvasculature
- GO:0030587, fruiting body formation (sensu Dictyosteliida)
+ GO:0030996, cell cycle arrest in response to nitrogen starvation
+ GO:0046596, regulation of virion penetration
+ GO:0046597, negative regulation of virion penetration
+ GO:0046598, positive regulation of virion penetration
+ GO:0046718, viral entry into host cell
+ GO:0046813, virion attachment, binding of host cell surface receptor
+ GO:0046814, virion attachment, binding of host cell surface coreceptor

Terms movements under GO Slim term 'cell-cell signaling ; GO:0007267'
+ GO:0001759, induction of an organ

Terms movements under GO Slim term 'physiological process ; GO:0007582'
- GO:0007596, blood coagulation
- GO:0007597, blood coagulation, intrinsic pathway
- GO:0007598, blood coagulation, extrinsic pathway
+ GO:0019048, virus-host interaction
+ GO:0019054, viral host cell process manipulation
+ GO:0019056, viral perturbation of host cell transcription
+ GO:0019062, virion attachment
+ GO:0019063, virion penetration
+ GO:0019064, viral envelope fusion
+ GO:0019066, viral translocation
+ GO:0019087, viral transformation
+ GO:0019088, viral immortalization
+ GO:0019089, viral transmission
+ GO:0020035, cytoadherence to microvasculature
- GO:0030168, platelet activation
- GO:0030193, regulation of blood coagulation
- GO:0030194, positive regulation of blood coagulation
- GO:0030195, negative regulation of blood coagulation
+ GO:0030260, entry into host cell
- GO:0042730, fibrinolysis
+ GO:0046596, regulation of virion penetration
+ GO:0046597, negative regulation of virion penetration
+ GO:0046598, positive regulation of virion penetration
+ GO:0046718, viral entry into host cell
+ GO:0046730, viral induction of host immune response
+ GO:0046731, passive viral induction of host immune response
+ GO:0046732, active viral induction of host immune response
+ GO:0046733, passive viral induction of humoral immune response
+ GO:0046734, passive viral induction of cell-mediated immune response
+ GO:0046735, passive viral induction of innate immune response
+ GO:0046736, active viral induction of humoral immune response
+ GO:0046737, active viral induction of cell-mediated immune response
+ GO:0046738, active viral induction of innate immune response
+ GO:0046739, viral spread within host
+ GO:0046740, viral spread within host, cell to cell
+ GO:0046741, viral spread within host, tissue to tissue
+ GO:0046778, viral perturbation of host mRNA processing
+ GO:0046779, viral inhibition of expression of host genes with introns
+ GO:0046780, viral inhibition of host mRNA splicing
+ GO:0046781, viral dispersion of host splicing factors
+ GO:0046793, virus-induced modification of host RNA polymerase II
+ GO:0046800, enhancement of virulence
+ GO:0046803, reduction of virulence
+ GO:0046813, virion attachment, binding of host cell surface receptor
+ GO:0046814, virion attachment, binding of host cell surface coreceptor

Terms movements under GO Slim term 'catabolism ; GO:0009056'
+ GO:0007092, anaphase-promoting complex activation

Terms movements under GO Slim term 'response to external stimulus ; GO:0009605'
+ GO:0007596, blood coagulation
+ GO:0007597, blood coagulation, intrinsic pathway
+ GO:0007598, blood coagulation, extrinsic pathway
+ GO:0030168, platelet activation
+ GO:0030193, regulation of blood coagulation
+ GO:0030194, positive regulation of blood coagulation
+ GO:0030195, negative regulation of blood coagulation
+ GO:0030996, cell cycle arrest in response to nitrogen starvation
+ GO:0042730, fibrinolysis

Terms movements under GO Slim term 'morphogenesis ; GO:0009653'
+ GO:0042246, tissue regeneration

Terms movements under GO Slim term 'embryonic development ; GO:0009790'
- GO:0040035, hermaphrodite genital morphogenesis

Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043'
+ GO:0006075, beta-1,3 glucan biosynthesis
+ GO:0006078, beta-1,6 glucan biosynthesis
+ GO:0030979, alpha-glucan biosynthesis

Terms movements under GO Slim term 'protein metabolism ; GO:0019538'
+ GO:0007026, negative regulation of microtubule depolymerization
+ GO:0007027, axonemal microtubule stabilization
+ GO:0007043, intercellular junction assembly
+ GO:0007092, anaphase-promoting complex activation
+ GO:0016264, gap junction assembly
+ GO:0019991, septate junction assembly
+ GO:0030913, paranodal junction formation
+ GO:0043146, spindle stabilization
+ GO:0043147, meiotic spindle stabilization
+ GO:0043148, mitotic spindle stabilization
+ GO:0045186, zonula adherens assembly

Terms movements under GO Slim term 'cell differentiation ; GO:0030154'
+ GO:0001737, establishment of wing hair orientation
+ GO:0001759, induction of an organ

Terms movements under GO Slim term 'host-pathogen interaction ; GO:0030383'
- GO:0019048, virus-host interaction
- GO:0019049, viral host defense evasion
- GO:0019050, viral inhibition of apoptosis
- GO:0019051, induction of apoptosis by virus
- GO:0019052, negative regulation of intracellular antiviral response by virus
- GO:0019053, negative regulation of extracellular antiviral response by virus
- GO:0019054, viral host cell process manipulation
- GO:0019055, viral perturbation of cell cycle regulation
- GO:0019056, viral perturbation of host cell transcription
- GO:0019057, viral perturbation of host cell mRNA translation
- GO:0020012, evasion of host immune response
- GO:0020033, antigenic variation
- GO:0020035, cytoadherence to microvasculature
- GO:0030682, evasion of host defense response
- GO:0030683, viral evasion of host immune response
- GO:0042782, passive immune evasion
- GO:0042783, active immune evasion
- GO:0042784, active immune evasion via modulation of complement system
- GO:0042785, active immune evasion via modulation of host-cytokine network
- GO:0042786, active immune evasion via modulation of antigen-processing or presentation pathway
- GO:0046730, viral induction of host immune response
- GO:0046731, passive viral induction of host immune response
- GO:0046732, active viral induction of host immune response
- GO:0046733, passive viral induction of humoral immune response
- GO:0046734, passive viral induction of cell-mediated immune response
- GO:0046735, passive viral induction of innate immune response
- GO:0046736, active viral induction of humoral immune response
- GO:0046737, active viral induction of cell-mediated immune response
- GO:0046738, active viral induction of innate immune response
- GO:0046773, viral inhibition of host cell protein biosynthesis shutoff
- GO:0046774, viral inhibition of intracellular interferon activity
- GO:0046775, viral inhibition of host cytokine production
- GO:0046776, viral inhibition of MHC class I cell surface presentation
- GO:0046778, viral perturbation of host mRNA processing
- GO:0046779, viral inhibition of expression of host genes with introns
- GO:0046780, viral inhibition of host mRNA splicing
- GO:0046781, viral dispersion of host splicing factors
- GO:0046783, viral perturbation of polysomes
- GO:0046791, viral inhibition of host complement neutralization
- GO:0046792, viral inhibition of cell cycle arrest
- GO:0046793, virus-induced modification of host RNA polymerase II

Terms movements under GO Slim term 'growth ; GO:0040007'
- GO:0045995, regulation of embryonic development



New terms in cellular_component ontology (22 new terms)
GO:0001939	GO:0005634	MGI	D	1035336	female pronucleus
GO:0001940	GO:0005634	MGI	D	1035336	male pronucleus
GO:0010240	GO:0005737	TAIR	D	1035336	pyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0031088	GO:0016023	MAH	D	1095612	platelet dense granule membrane
GO:0031089	GO:0016023	MAH	D	1095611	platelet dense granule lumen
GO:0031090	GO:0005623	MAH	D	1095759	organelle membrane
GO:0031091	GO:0016023	MAH	D	1095608	platelet alpha granule
GO:0031092	GO:0016023	MAH	D	1095610	platelet alpha granule membrane
GO:0031093	GO:0016023	MAH	D	1095608	platelet alpha granule lumen
GO:0031094	GO:0005622	MAH	D	1095656	platelet dense tubular network
GO:0031095	GO:0005622	MAH	D	1095656	platelet dense tubular network membrane
GO:0031096	GO:0005622	MAH	D	1095657	platelet dense tubular network lumen
GO:0031097	GO:0005622	MAH	D	1095836	medial ring
GO:0031105	GO:0005622	MAH	D	1079966	septin complex
GO:0031143	GO:0005886	MAH	D	1104256	pseudopodium
GO:0031160	GO:0005618	MAH	D	1105623	spore wall
GO:0043292	GO:0005737	JL	D	1068644	contractile fiber
GO:0043293	GO:0005829	JL	D	1102402	apoptosome
GO:0043294	GO:0005739	JL	D	1080687	mitochondrial glutamate synthase complex (NADH)
GO:0043296	GO:0005886	JL	D	1067569	apical junction complex
GO:0051285	GO:0005622	AI	D	750097	cell cortex of cell tip
GO:0051286	GO:0005623	AI	D	750097	cell tip


New obsoletions in cellular_component ontology
GO:0009352, dihydrolipoyl dehydrogenase complex: the activity dihydrolipoamide dehydrogenase is held by a single protein (Lpd1 in yeast), which is one of the components of three different complexes: 2-oxoglutarate dehydrogenase, pyruvate dehydrogenase, and branch chain amino acid dehydrogenase, so dihydrolipoamide dehydrogenase is not a complex itself.
GO:0009354, dihydrolipoamide S-succinyltransferase complex: dihydrolipoamide S-succinyltransferase itself is not a complex, it is a component of the 2-oxoglutarate dehydrogenase complex, the activity dihydrolipoamide S-succinyltransferase is contained in a single polypeptide.
GO:0030484, muscle fiber: a muscle fiber is a cell type rather than a cell component.
GO:0048181, activin A complex: represents a homodimer; GO cellular component terms must represent complexes containing more than one gene product.
GO:0048182, activin B complex: represents a homodimer; GO cellular component terms must represent complexes containing more than one gene product.


Term name changes in cellular_component ontology
GO:0030485: smooth muscle fiber --> smooth muscle contractile fiber


New definitions for cellular_component ontology terms (5 new definitions)
GO:0005760, gamma DNA polymerase complex
GO:0005848, mRNA cleavage stimulating factor complex
GO:0005849, mRNA cleavage factor complex
GO:0005940, septin ring
GO:0030481, septin ring (sensu Fungi)


Term movements in cellular_component ontology:
Terms movements under GO Slim term 'intracellular ; GO:0005622'
+ GO:0030076, light-harvesting complex

Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
+ GO:0008091, spectrin
+ GO:0010005, cortical microtubule (sensu Viridiplantae)
+ GO:0030478, actin cap
+ GO:0030479, actin cortical patch
+ GO:0030863, cortical cytoskeleton
+ GO:0030864, cortical actin cytoskeleton
+ GO:0030981, cortical microtubule cytoskeleton

Terms movements under GO Slim term 'thylakoid ; GO:0009579'
- GO:0030076, light-harvesting complex
- GO:0030077, light-harvesting complex (sensu Proteobacteria)
- GO:0030078, light-harvesting complex, core complex
- GO:0030079, light-harvesting complex, peripheral complex
- GO:0030080, B875 antenna complex
- GO:0030081, B800-820 antenna complex
- GO:0030082, B800-850 antenna complex

Terms movements under GO Slim term 'cytoplasmic vesicle ; GO:0016023'
+ GO:0030077, light-harvesting complex (sensu Proteobacteria)
+ GO:0030078, light-harvesting complex, core complex
+ GO:0030079, light-harvesting complex, peripheral complex
+ GO:0030080, B875 antenna complex
+ GO:0030081, B800-820 antenna complex
+ GO:0030082, B800-850 antenna complex



New terms in molecular_function ontology (7 new terms)
GO:0031127	GO:0016740	MAH	D	1098231	alpha(1,2)-fucosyltransferase activity
GO:0031132	GO:0003824	MAH	D	1101275	serine 3-dehydrogenase
GO:0031151	GO:0016740	MAH	D	1108394	histone lysine N-methyltransferase activity (H3-K79 specific)
GO:0035312	GO:0004518	FB	D	1089046	5'-3' exodeoxyribonuclease activity
GO:0043295	GO:0005488	JL	D	1105323	glutathione binding
GO:0051287	GO:0005488	AI	D	1108641	NAD binding
GO:0051288	GO:0005488	AI	D	1108651	NADH binding


Term name changes in molecular_function ontology
GO:0005334: noradrenaline:sodium symporter activity --> norephinephrine:sodium symporter activity
GO:0016439: tRNA-pseudouridine synthase I activity --> tRNA-pseudouridine synthase activity
GO:0031071: cysteine desulfurase --> cysteine desulfurase activity


New definitions for molecular_function ontology terms (2 new definitions)
GO:0009982, pseudouridine synthase activity
GO:0019912, cyclin-dependent protein kinase activating kinase activity


New term merges in molecular_function ontology
GO:0005331 has been merged into GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity
GO:0010173 has been merged into GO:0005245, voltage-gated calcium channel activity
GO:0015329 has been merged into GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity


Term movements in molecular_function ontology:
Terms movements under GO Slim term 'protein kinase activity ; GO:0004672'
+ GO:0019912, cyclin-dependent protein kinase activating kinase activity

Terms movements under GO Slim term 'transporter activity ; GO:0005215'
+ GO:0005298, proline:sodium symporter activity
+ GO:0005307, choline:sodium symporter activity
+ GO:0005313, L-glutamate transporter activity
+ GO:0005314, high-affinity glutamate transporter activity
+ GO:0005332, gamma-aminobutyric acid:sodium symporter activity
+ GO:0005395, eye pigment precursor transporter activity
+ GO:0008560, steroid-transporting ATPase activity
+ GO:0015185, L-gamma-aminobutyric acid transporter activity
+ GO:0015187, glycine transporter activity
+ GO:0015327, cystine:glutamate antiporter activity
+ GO:0015374, neutral, cationic amino acid:sodium:chloride symporter activity
+ GO:0015375, glycine:sodium symporter activity
+ GO:0015418, quaternary-ammonium-compound-transporting ATPase activity
+ GO:0015431, glutathione S-conjugate-exporting ATPase activity
+ GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity
+ GO:0015501, glutamate:sodium symporter activity
+ GO:0042626, ATPase activity, coupled to transmembrane movement of substances
+ GO:0048502, thiamin-transporting ATPase activity

Terms movements under GO Slim term 'neurotransmitter transporter activity ; GO:0005326'
- GO:0005298, proline:sodium symporter activity
- GO:0005307, choline:sodium symporter activity
- GO:0005313, L-glutamate transporter activity
- GO:0005314, high-affinity glutamate transporter activity
- GO:0005332, gamma-aminobutyric acid:sodium symporter activity
- GO:0015185, L-gamma-aminobutyric acid transporter activity
- GO:0015187, glycine transporter activity
- GO:0015259, glutamate channel activity
- GO:0015327, cystine:glutamate antiporter activity
- GO:0015374, neutral, cationic amino acid:sodium:chloride symporter activity
- GO:0015375, glycine:sodium symporter activity
- GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity
- GO:0015501, glutamate:sodium symporter activity

Terms movements under GO Slim term 'binding ; GO:0005488'
- GO:0004890, GABA-A receptor activity
- GO:0004965, GABA-B receptor activity
- GO:0016917, GABA receptor activity



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
1002562	Fixed	mitotic spindle orientation/positioning	[none]
1062361	Rejected	nuclear periphery	[none]
1068644	Fixed	muscle fibre = muscle cell?	GO:0043292
1075231	Accepted	regulation of development	[none]
1075880	Accepted	new term/relationship	GO:0051273-51275 GO:0051278
1076778	Accepted	ntr : SAPK signaling pathway	GO:0031098
1077149	Accepted	new regeneration terms	GO:0031099-31104
1077611	Accepted	missing parent: GO:0030996 : cell cycle arrest ..	GO:0031135-31142
1078241	Accepted	tricarboxylic acid cycle	[none]
1079966	Accepted	ntr septin complex	GO:0031105-31107
1080687	Fixed	Glutamate synthase complexes	GO:0043294
1081271	Accepted	microtubule destabilization	GO:0031109-31117
1081380	Accepted	dihydrolipoamide dehydrogenase complex	[none]
1081780	Fixed	voltage-gated, voltage-sensitive, voltage-dependent	[none]
1082082	Fixed	iron-siderochrome transport; GOid=GO:0015892	[none]
1085510	Fixed	Phagocytosis (GO:0006909), definition change request	[none]
1085967	Accepted	meristems and phase transitions	GO:0010228-10229
1089046	Accepted	5'-3' exodeoxyribonuclease activity (new term req)	GO:0035312
1089145	Accepted	wound healing- a couple of new terms	GO:0035313-35314
1089209	Fixed	path for GABA transporter activity	[none]
1095160	Invalid	difference ? GO:0016282/GO:0030688 43S	[none]
1095183	Fixed	update def GO:0046938 phytochelatin biosynthesis	[none]
1095608	Accepted	platelet alpha granule lumen	GO:0031091-31093
1095610	Accepted	platelet alpha granule membrane	GO:0031092
1095611	Accepted	platelet dense granule lumen	GO:0031089
1095612	Accepted	platelet dense granule membrane	GO:0031088
1095656	Accepted	platelet dense tubular system membrane	GO:0031094-31095
1095657	Accepted	platelet dense tubular system lumen	GO:0031096
1095759	Fixed	organelle terms - def corrections and new term	GO:0031090
1095836	Accepted	ntr medial ring/& cytokinesis, contractile ring positioning	GO:0031097
1095846	Fixed	GABA transporters	[none]
1095935	Accepted	holo acyl carrier protein biosynthesis	GO:0031108
1097127	Fixed	cysteine desulfurase name change	[none]
1097501	Fixed	regulation terms for calicium sequestering	GO:0051279-51284
1097944	Fixed	query spindle elongation/bipolar spindle formation	[none]
1097959	Accepted	microtubule organization inconsistencies	GO:0031121-31122
1097999	Duplicate	spindle problems	[none]
1098072	Works For Me	missing parent? glucan 1,4-alpha-glucosidase activity	[none]
1098231	Accepted	new term: alpha(1,2)-fucosyltransferase activity	GO:0031127
1098538	Accepted	sister chromatid biorientation	GO:0031134
1099447	Works For Me	diff telomerase activity/telomeric template RNA reverse	[none]
1099570	Accepted	regulation of embryonic development	[none]
1099578	Works For Me	query telomere cap complex	[none]
1099707	Accepted	def change: glycoprotein-N-acetylgalactosamine 3-beta-galact	[none]
1100980	Fixed	homodimers to obsolete (48181 and 48182)	[none]
1101275	Accepted	serine 3-dehydrogenase	GO:0031132
1101564	Accepted	+syn.amidophosphoribosyltransferase activity	[none]
1101671	Works For Me	quick question mating(-) type	[none]
1101940	Accepted	Obsoletion of dihydrolipoamide S-succinyltransferase	[none]
1102393	Accepted	regulation of axon diameter	GO:0031133
1102402	Accepted	New term:  apoptosome	GO:0043293
1104237	Fixed	cellular response to starvation: fruiting body formation	[none]
1104246	Accepted	ntr: Dicty development	GO:0031152-31159
1104256	Accepted	ntr: pseudopodium	GO:0031143
1104483	Accepted	NTR proteasome localization	GO:0031144-31146
1104613	Works For Me	missing parent? external side of plasma membrane	[none]
1104661	Accepted	add synonym	[none]
1105312	Fixed	missing parent	[none]
1105323	Accepted	glutathione binding	GO:0043295
1105345	Accepted	new synomyn: sporulation (30435) =spore differentiation	[none]
1105378	Accepted	More new terms for dicty development	GO:0031147-31150
1105459	Fixed	parents for ATPase activity, coupled to transmembrane moveme	[none]
1105623	Accepted	ntr: spore coat and spore coat biosynthesis	GO:0031160
1105955	Fixed	update metabolism defs	[none]
1106582	Fixed	protein localization query	[none]
1106599	Fixed	missing parent exoxyst	[none]
1106987	Accepted	new synomym for sphinganine kinase activity (GO 8481)	[none]
1107849	Accepted	missing parent clathrin adaptor complex	[none]
1107865	Duplicate	missing parent clathrin adaptor complex	[none]
1107869	Accepted	missing parent cortical actin cytoskeleton	[none]
1108219	Works For Me	ESCRT II complex	[none]
1108394	Accepted	H3-K79 methyltransferase activity	GO:0031151
1108641	Accepted	NAD binding	GO:0051287
1108651	Accepted	NADH binding	GO:0051288
1108665	Accepted	protein homotetramerization	GO:0051289
1108694	Accepted	protein homotetramerization	GO:0051290-51291
1109186	Works For Me	missing parent prereplicative complex	[none]
1111084	Accepted	ntr: phosphatidylinositol catabolism	GO:0031161
1111826	Fixed	GO:0040035 should be child of GO:0035112, not GO:0030538	[none]
750097	Fixed	pombe sensu terms for polarized growth	GO:0051285-51286
818626	Works For Me	mRNA cleavage complexes query	[none]
837124	Accepted	3' RNA processing	GO:0031123-31126
877848	Accepted	ribulose bisphosphate carboxylase complex	[none]
896523	None	receptor signaling protein activity and its children	[none]
899655	None	kidney development	GO:0001822-01824
944051	Accepted	induction and lateral inhibition	GO:0031128-31131
948372	Accepted	fixing cell differentiation terms	[none]
949417	Fixed	pseudouridine synthase confusion	GO:0031118-31120
956691	Accepted	hair/trichome formation	GO:0035315-35320
965023	Accepted	new terms requested by PAMGO	GO:0042000 GO:0043298 GO:0044000-44011 GO:0044399-44419



Statistics:
biological_process: 9383 terms, 96.4% defined (9047 terms defined)
cellular_component: 1532 terms, 94.1% defined (1442 terms defined)
molecular_function: 7459 terms, 89.9% defined (6705 terms defined)
Total: 18374 terms, 93.6% defined (17194 terms defined)


Term errors
none