GO Monthly Release Notes for January 2003
========================
Generated on Mon Oct 27 12:28:52 2003

Files used:
component	old: 2.285	new: 2.296
function 	old: 2.564	new: 2.581
process  	old: 2.648	new: 2.657
definitions	old: 2.877	new: 2.907
GO Slim: 	Generic.0208

Key:

|----1----||----2-----||-3--||4||----5----||-----------6-----------|
GO:0009941  GO:0009536  TAIR  D  SF:575119  chloroplast envelope
               (obs)

1. GO ID number
2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete.
Terms with more than one GO-slim parent have further parents listed underneath the first parent.
3. Database that added term
4. indicates the existence of a definition for the term
5. the sourceforge request ID the term was added in response to
6. term name

Columns are tab-delimited and can be imported into Excel for ease of reading.

New terms in component ontology (8 new terms)
GO:0000343	GO:0009536	SGD	D	      	plastid-encoded plastid RNA polymerase complex A
GO:0000344	GO:0009536	SGD	D	      	plastid-encoded plastid RNA polymerase complex B
GO:0000345	GO:0005829	SGD	D	      	cytosolic DNA-directed RNA polymerase (sensu Bacteria)
GO:0009986	GO:0005623	TAIR	D	      	cell surface
GO:0030673	GO:0005623	MAH	D	661069	axolemma
GO:0042579	GO:0005737	JL	D	669029	microbody
GO:0042580	GO:0005777	JL	D	668448	mannosome
GO:0046821	GO:0005622	AI	D	      	extrachromosomal DNA


New obsoletions in component ontology
GO:0001683, axonemal dynein heavy chain: represents a single gene product and not a complex.
GO:0001684, axonemal dynein intermediate chain: represents a single gene product and not a complex.
GO:0001685, axonemal dynein intermediate light chain: represents a single gene product and not a complex.
GO:0001686, axonemal dynein light chain: represents a single gene product and not a complex.
GO:0001687, cytoplasmic dynein heavy chain: represents a single gene product and not a complex.
GO:0001688, cytoplasmic dynein intermediate chain: represents a single gene product and not a complex.
GO:0001689, cytoplasmic dynein intermediate light chain: represents a single gene product and not a complex.
GO:0001690, cytoplasmic dynein light chain: represents a single gene product and not a complex.
GO:0005580, membrane attack complex protein alphaM chain: represents a single gene product and not a complex.
GO:0005613, laminin receptor protein: is out of date. It seems to be referring to the non-integrin 34/67kDa laminin receptor, which new research has shown to actually be a ribosomal protein of the SP2 family.
GO:0005670, transcription-activating factor, 30kD: represents a single gene product and not a complex.
GO:0005888, proteoglycan integral to plasma membrane: describes the composition (i.e. proteoglycan) and not the location of a gene product.
GO:0005957, debranching enzyme: is ambiguous (there are several debranching enzymes) and because it probably represents the glycogen debranching enzyme which is a single gene product and not a complex.
GO:0005972, fibrinogen alpha chain: represents a single gene product and not a complex.
GO:0005973, fibrinogen beta chain: represents a single gene product and not a complex.
GO:0005974, fibrinogen gamma chain: represents a single gene product and not a complex.
GO:0008008, membrane attack complex protein beta2 chain: represents a single gene product and not a complex.
GO:0009839, SCF complex substrate recognition subunit: represents a single gene product and not a complex.
GO:0009929, cell surface (sensu Magnoliophyta): No reason given.
GO:0018998, metaxin: represents a single gene product and not a complex.
GO:0019032, viral glycoprotein: represents a type of gene product and not a location or complex.
GO:0019816, B-cell receptor accessory molecule complex: represents a molecule and not a location or complex.


Term name changes in component ontology
GO:0005605: basement lamina --> basal lamina
GO:0005665: DNA-directed RNA polymerase II, core --> DNA-directed RNA polymerase II, core complex
GO:0005760: gamma DNA polymerase --> gamma DNA polymerase complex
GO:0009928: cell surface --> cell surface (sensu Magnoliophyta)
GO:0030312: external protective structure --> external encapsulating structure


New definitions for component ontology terms (26 new definitions)
GO:0001683, axonemal dynein heavy chain
GO:0001684, axonemal dynein intermediate chain
GO:0001685, axonemal dynein intermediate light chain
GO:0001686, axonemal dynein light chain
GO:0001687, cytoplasmic dynein heavy chain
GO:0001688, cytoplasmic dynein intermediate chain
GO:0001689, cytoplasmic dynein intermediate light chain
GO:0001690, cytoplasmic dynein light chain
GO:0005580, membrane attack complex protein alphaM chain
GO:0005613, laminin receptor protein
GO:0005665, DNA-directed RNA polymerase II, core complex
GO:0005666, DNA-directed RNA polymerase III complex
GO:0005670, transcription-activating factor, 30kD
GO:0005727, extrachromosomal circular DNA
GO:0005736, DNA-directed RNA polymerase I complex
GO:0005957, debranching enzyme
GO:0005972, fibrinogen alpha chain
GO:0005973, fibrinogen beta chain
GO:0005974, fibrinogen gamma chain
GO:0008008, membrane attack complex protein beta2 chain
GO:0018998, metaxin
GO:0019032, viral glycoprotein
GO:0019815, B-cell receptor complex
GO:0019816, B-cell receptor accessory molecule complex
GO:0030312, external encapsulating structure
GO:0042101, T-cell receptor complex


Term movements in component ontology:
Terms movements under GO Slim term 'cellular_component ; GO:0005575'
- GO:0019032, viral glycoprotein

Terms movements under GO Slim term 'extracellular ; GO:0005576'
- GO:0005577, fibrinogen complex
- GO:0005619, spore wall (sensu Fungi)
- GO:0005621, bud scar
- GO:0005630, dityrosine layer of spore wall
- GO:0005631, chitosan layer of spore wall
- GO:0005632, inner layer of spore wall
- GO:0005972, fibrinogen alpha chain
- GO:0005973, fibrinogen beta chain
- GO:0005974, fibrinogen gamma chain
- GO:0009274, cell wall (sensu Bacteria)
- GO:0009275, cell wall (sensu Gram-positive Bacteria)
- GO:0009276, cell wall (sensu Gram-negative Bacteria)
- GO:0009277, cell wall (sensu Fungi)
- GO:0009505, cell wall (sensu Magnoliophyta)
- GO:0009530, primary cell wall
- GO:0009531, secondary cell wall
- GO:0009549, cellulose microfibril
- GO:0019032, viral glycoprotein
- GO:0030287, periplasmic space (sensu Fungi)
- GO:0030445, yeast-form cell wall
- GO:0030446, hyphal cell wall

Terms movements under GO Slim term 'extracellular matrix ; GO:0005578'
- GO:0005580, membrane attack complex protein alphaM chain
- GO:0005613, laminin receptor protein
- GO:0008008, membrane attack complex protein beta2 chain

Terms movements under GO Slim term 'extracellular space ; GO:0005615'
+ GO:0005577, fibrinogen complex

Terms movements under GO Slim term 'intracellular ; GO:0005622'
- GO:0009839, SCF complex substrate recognition subunit

Terms movements under GO Slim term 'cell ; GO:0005623'
- GO:0005888, proteoglycan integral to plasma membrane
+ GO:0009505, cell wall (sensu Magnoliophyta)
+ GO:0009530, primary cell wall
+ GO:0009531, secondary cell wall
+ GO:0009549, cellulose microfibril
+ GO:0009897, external side of plasma membrane
- GO:0009929, cell surface (sensu Magnoliophyta)
- GO:0018998, metaxin

Terms movements under GO Slim term 'nucleoplasm ; GO:0005654'
- GO:0005670, transcription-activating factor, 30kD

Terms movements under GO Slim term 'cytoplasm ; GO:0005737'
- GO:0009839, SCF complex substrate recognition subunit

Terms movements under GO Slim term 'mitochondrion ; GO:0005739'
- GO:0018998, metaxin

Terms movements under GO Slim term 'cytoskeleton ; GO:0005856'
- GO:0001683, axonemal dynein heavy chain
- GO:0001684, axonemal dynein intermediate chain
- GO:0001685, axonemal dynein intermediate light chain
- GO:0001686, axonemal dynein light chain
- GO:0001687, cytoplasmic dynein heavy chain
- GO:0001688, cytoplasmic dynein intermediate chain
- GO:0001689, cytoplasmic dynein intermediate light chain
- GO:0001690, cytoplasmic dynein light chain

Terms movements under GO Slim term 'plasma membrane ; GO:0005886'
- GO:0005888, proteoglycan integral to plasma membrane
- GO:0019816, B-cell receptor accessory molecule complex

Terms movements under GO Slim term 'cilium ; GO:0005929'
- GO:0001683, axonemal dynein heavy chain
- GO:0001684, axonemal dynein intermediate chain
- GO:0001685, axonemal dynein intermediate light chain
- GO:0001686, axonemal dynein light chain

Terms movements under GO Slim term 'unlocalized ; GO:0005941'
- GO:0005957, debranching enzyme

Terms movements under GO Slim term 'external encapsulating structure ; GO:0030312'
+ GO:0005619, spore wall (sensu Fungi)
+ GO:0005621, bud scar
+ GO:0005630, dityrosine layer of spore wall
+ GO:0005631, chitosan layer of spore wall
+ GO:0005632, inner layer of spore wall
+ GO:0009274, cell wall (sensu Bacteria)
+ GO:0009275, cell wall (sensu Gram-positive Bacteria)
+ GO:0009276, cell wall (sensu Gram-negative Bacteria)
+ GO:0009277, cell wall (sensu Fungi)
+ GO:0030287, periplasmic space (sensu Fungi)
+ GO:0030445, yeast-form cell wall
+ GO:0030446, hyphal cell wall



New terms in function ontology (21 new terms)
GO:0000773	GO:0003824	SGD	D	665370	phosphatidyl-N-methylethanolamine N-methyltransferase
GO:0001734	GO:0003824	MGI	D	677062	mRNA (N6-adenosine)-methyltransferase
GO:0009973	GO:0003824	TAIR	D	661813	adenosine phosphosulfate reductase
GO:0009974	GO:0003824	TAIR	D	661813	epsilon hydroxylase
GO:0009975	GO:0003824	TAIR	D	661813	cyclase
GO:0009976	GO:0003824	TAIR	D	661813	tocopherol cyclase
GO:0009977	GO:0005215	TAIR	D	661813	delta-pH dependent transporter
GO:0009978	GO:0003824	TAIR	D	661813	allene oxide synthase
GO:0009979	GO:0003824	TAIR	D	661813	16:0 monogalactosyldiacylglycerol desaturase
GO:0009980	GO:0008233	TAIR	D	661813	glutamate carboxypeptidase
GO:0009981	GO:0003824	TAIR	D	661813	callose synthase
GO:0009982	GO:0003824	TAIR	D	661813	pseudouridine synthase
GO:0009983	GO:0008233	TAIR	D	661813	tyrosine aminopeptidase
GO:0009984	GO:0003824	TAIR	D	661813	adenylate forming enzyme
GO:0009985	GO:0003824	TAIR	D	661813	dihydroflavonol(thiole) lyase
GO:0042576	GO:0008233	JL	D	664053	aspartyl aminopeptidase
GO:0042577	GO:0003824	JL	D	664962	lipid phosphatase
GO:0042578	GO:0003824	JL	D	      	phosphoric ester hydrolase
GO:0046820	GO:0003824	AI	D	      	4-amino-4-deoxychorismate synthase
GO:0046848	GO:0005488	AI	D	667678	hydroxyapatite binding
GO:0046857	GO:0003824	AI	D	      	oxidoreductase, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor


New obsoletions in function ontology
GO:0008149, para-aminobenzoic acid (PABA) synthase: refers to two different functions, 1) a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and 2) a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered.
GO:0008438, 1-phosphatidylinositol-5-phosphate kinase: is a redundant grouping term with only one child. It is also incorrectly defined and has an incorrect EC dbxref.
GO:0008950, p-aminobenzoate synthetase: refers to two different functions, 1) a glutamine amidotransferase that functions as an aminodeoxychorismate synthase [itself composed of two enzymatic activities, a glutaminase and a chorismate aminase (this latter is sometimes referred to as the aminodeoxychorismate synthase)] and 2) a 4-amino-4-deoxychorismate aromatase (4-amino-4-deoxychorismate lyase). Note that the name 'para-amino benzoate synthase' was initially given to the 'aminodeoxychorismate synthase' activity before the additional lyase activity was discovered.


Obsolete terms reinstated in function ontology
GO:0019172, glyoxalase III:

Term name changes in function ontology
GO:0000107: imidazoleglycerol-phosphate synthase --> imidazoleglycerol phosphate synthase
GO:0004172: ecdysteroid UDP-glucosyl/UDP glucuronosyl transferase --> ecdysteroid UDP-glucosyl/UDP-glucuronosyl transferase
GO:0004366: glycerol-3-phosphate acyltransferase --> glycerol-3-phosphate O-acyltransferase
GO:0004441: inositol-1,4,-bisphosphate 1-phosphatase --> inositol-1,4-bisphosphate 1-phosphatase
GO:0004446: inositol-1,3,4,5-tetrakiphosphate 3-phosphatase --> inositol-1,3,4,5-tetrakisphosphate 3-phosphatase
GO:0004756: selenide,water dikinase --> selenide, water dikinase
GO:0005065: heterotrimeric G protein --> heterotrimeric G-protein
GO:0008719: D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase --> dihydroneopterin triphosphate 2'-epimerase
GO:0008987: quinolinate synthase --> quinolinate synthetase A
GO:0016316: inositol-3,4,-bisphosphate 4-phosphatase --> inositol-3,4-bisphosphate 4-phosphatase
GO:0017089: glycolipid transfer --> glycolipid transporter
GO:0018725: trans-3,4-fihydrodiolphenanthrene sulfotransferase --> trans-3,4-dihydrodiolphenanthrene sulfotransferase
GO:0045462: trichothecene 3-0-acetyltransferase --> trichothecene 3-O-acetyltransferase


New definitions for function ontology terms (120 new definitions)
GO:0000062, acyl-CoA binding
GO:0000107, imidazoleglycerol phosphate synthase
GO:0003676, nucleic acid binding
GO:0003677, DNA binding
GO:0003678, DNA helicase
GO:0003682, chromatin binding
GO:0003684, damaged DNA binding
GO:0003688, DNA replication origin binding
GO:0003693, P-element binding
GO:0003696, satellite DNA binding
GO:0003701, RNA polymerase I transcription factor
GO:0003702, RNA polymerase II transcription factor
GO:0003709, RNA polymerase III transcription factor
GO:0003725, double-stranded RNA binding
GO:0003727, single-stranded RNA binding
GO:0003729, mRNA binding
GO:0003779, actin binding
GO:0003793, defense/immunity protein
GO:0004177, aminopeptidase
GO:0004649, poly(ADP-ribose) glycohydrolase
GO:0004672, protein kinase
GO:0004871, signal transducer
GO:0005496, steroid binding
GO:0005500, juvenile hormone binding
GO:0005501, retinoid binding
GO:0005515, protein binding
GO:0005516, calmodulin binding
GO:0005527, macrolide binding
GO:0005534, galactose binding
GO:0005539, glycosaminoglycan binding
GO:0005540, hyaluronic acid binding
GO:0005541, acyl-CoA or acyl binding
GO:0005549, odorant binding
GO:0008017, microtubule binding
GO:0008081, phosphoric diester hydrolase
GO:0008144, drug binding
GO:0008145, phenylalkylamine binding
GO:0008149, para-aminobenzoic acid (PABA) synthase
GO:0008168, methyltransferase
GO:0008201, heparin binding
GO:0008402, aromatase
GO:0008415, acyltransferase
GO:0008443, phosphofructokinase
GO:0008503, benzodiazepine receptor
GO:0008686, 3,4 dihydroxy-2-butanone-4-phosphate synthase
GO:0008696, 4-amino-4-deoxychorismate lyase
GO:0008699, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
GO:0008719, dihydroneopterin triphosphate 2'-epimerase
GO:0008820, cobinamide phosphate guanylyltransferase
GO:0008950, p-aminobenzoate synthetase
GO:0008987, quinolinate synthetase A
GO:0015026, coreceptor
GO:0015070, toxin
GO:0015136, sialic acid transporter
GO:0015144, carbohydrate transporter
GO:0015145, monosaccharide transporter
GO:0015154, disaccharide transporter
GO:0015157, oligosaccharide transporter
GO:0015163, hexuronide transporter
GO:0015464, acetylcholine receptor
GO:0015485, cholesterol binding
GO:0015631, tubulin binding
GO:0015642, bacteriolytic toxin
GO:0015644, lipoprotein antitoxin
GO:0016284, alanine aminopeptidase
GO:0016329, apoptosis regulator
GO:0016490, structural constituent of peritrophic membrane (sensu Insecta)
GO:0016788, hydrolase, acting on ester bonds
GO:0016791, phosphoric monoester hydrolase
GO:0016795, phosphoric triester hydrolase
GO:0016835, carbon-oxygen lyase
GO:0016836, hydro-lyase
GO:0016837, carbon-oxygen lyase, acting on polysaccharides
GO:0016838, carbon-oxygen lyase, acting on phosphates
GO:0016839, other carbon-oxygen lyase
GO:0016840, carbon-nitrogen lyase
GO:0016841, ammonia-lyase
GO:0016842, amidine-lyase
GO:0016843, amine-lyase
GO:0016845, other carbon-nitrogen lyase
GO:0016846, carbon-sulfur lyase
GO:0016875, ligase, forming carbon-oxygen bonds
GO:0016877, ligase, forming carbon-sulfur bonds
GO:0016879, ligase, forming carbon-nitrogen bonds
GO:0016884, carbon-nitrogen ligase, with glutamine as amido-N-donor
GO:0016885, ligase, forming carbon-carbon bonds
GO:0016886, ligase, forming phosphoric ester bonds
GO:0016917, GABA receptor
GO:0017046, polypeptide hormone binding
GO:0017089, glycolipid transporter
GO:0017129, triglyceride binding
GO:0017140, lipoic acid synthase
GO:0017161, inositol-1,3,4-trisphosphate 4-phosphatase
GO:0018707, 1-phenanthrol methyltransferase
GO:0018710, acetone carboxylase
GO:0018711, benzoyl acetate-CoA thiolase
GO:0018722, 1-phenanthrol sulfotransferase
GO:0018723, 3-phenanthrol sulfotransferase
GO:0018724, 4-phenanthrol sulfotransferase
GO:0018726, 9-phenanthrol sulfotransferase
GO:0018727, 2-phenanthrol sulfotransferase
GO:0019111, phenanthrol sulfotransferase
GO:0019177, dihydroneopterin triphosphate pyrophosphohydrolase
GO:0019200, carbohydrate kinase
GO:0019201, nucleotide kinase
GO:0019202, amino acid kinase
GO:0019205, nucleobase, nucleoside, nucleotide kinase
GO:0019206, nucleoside kinase
GO:0019214, surfactant
GO:0019811, cocaine binding
GO:0019825, oxygen binding
GO:0019840, isoprenoid binding
GO:0019843, rRNA binding
GO:0019846, enterotoxin
GO:0019847, neurotoxin
GO:0019848, conotoxin
GO:0019849, cytotoxin
GO:0030351, inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase
GO:0030352, inositol-1,4,5,6-tetrakisphosphate 6-phosphatase
GO:0030594, neurotransmitter receptor


New term merges in function ontology
GO:0016003 has been merged into GO:0016884, carbon-nitrogen ligase, with glutamine as amido-N-donor
GO:0016302 has been merged into GO:0016791, phosphoric monoester hydrolase
GO:0042172 has been merged into GO:0004057, arginyltransferase


Term movements in function ontology:
Terms movements under GO Slim term 'enzyme ; GO:0003824'
- GO:0008149, para-aminobenzoic acid (PABA) synthase
- GO:0008438, 1-phosphatidylinositol-5-phosphate kinase
- GO:0008950, p-aminobenzoate synthetase

Terms movements under GO Slim term 'protein kinase ; GO:0004672'
- GO:0018110, histone-arginine kinase

Terms movements under GO Slim term 'enzyme regulator ; GO:0030234'
- GO:0008599, protein phosphatase type 1, regulator
- GO:0008601, protein phosphatase type 2A, regulator
- GO:0030359, protein phosphatase type 2B, regulator
- GO:0030362, protein phosphatase type 4, regulator



New terms in process ontology (32 new terms)
GO:0046822	GO:0006810	AI	D	665131	regulation of nucleocytoplasmic transport
GO:0046823	GO:0006810	AI	D	665131	negative regulation of nucleocytoplasmic transport
GO:0046824	GO:0006810	AI	D	665131	positive regulation of nucleocytoplasmic transport
GO:0046825	GO:0006810	AI	D	665131	regulation of protein-nucleus export
          	GO:0015031
          	GO:0019538
GO:0046826	GO:0006810	AI	D	665131	negative regulation of protein-nucleus export
          	GO:0015031
          	GO:0019538
GO:0046827	GO:0006810	AI	D	665131	positive regulation of protein-nucleus export
          	GO:0015031
          	GO:0019538
GO:0046828	GO:0006810	AI	D	665131	regulation of RNA-nucleus import
          	GO:0008152
GO:0046829	GO:0006810	AI	D	665131	negative regulation of RNA-nucleus import
          	GO:0008152
GO:0046830	GO:0006810	AI	D	665131	positive regulation of RNA-nucleus import
          	GO:0008152
GO:0046831	GO:0006810	AI	D	665131	regulation of RNA-nucleus export
          	GO:0008152
GO:0046832	GO:0006810	AI	D	665131	negative regulation of RNA-nucleus export
          	GO:0008152
GO:0046833	GO:0006810	AI	D	665131	positive regulation of RNA-nucleus export
          	GO:0008152
GO:0046834	GO:0006629	AI	D	664967	lipid phosphorylation
          	GO:0008152
GO:0046835	GO:0005975	AI	D	664967	carbohydrate phosphorylation
          	GO:0008152
GO:0046836	GO:0006810	AI	D	664457	glycolipid transport
GO:0046838	GO:0005975	AI	D	664967	phosphorylated carbohydrate dephosphorylation
          	GO:0008152
GO:0046839	GO:0006629	AI	D	664967	phospholipid dephosphorylation
          	GO:0008152
GO:0046841	GO:0008152	AI	D	664312	trisporic acid metabolism
GO:0046842	GO:0008152	AI	D	664312	trisporic acid biosynthesis
GO:0046843	GO:0000003	AI	D	665849	dorsal appendage formation
GO:0046844	GO:0000003	AI	D	665849	micropyle formation
GO:0046845	GO:0007275	AI	D	665784	branch cell fate determination (sensu Insecta)
GO:0046846	GO:0007275	AI	D	665784	tracheal placode cell fate determination (sensu Insecta)
GO:0046847	GO:0016043	AI	D	665630	filopodium formation
GO:0046849	GO:0007582	AI	D	667678	bone remodeling
GO:0046850	GO:0007582	AI	D	667678	regulation of bone remodeling
GO:0046851	GO:0007582	AI	D	667678	negative regulation of bone remodeling
GO:0046852	GO:0007582	AI	D	667678	positive regulation of bone remodeling
GO:0046853	GO:0005975	AI	D	664967	inositol and derivative phosphorylation
          	GO:0008152
GO:0046854	GO:0006629	AI	D	664967	phosphoinositide phosphorylation
          	GO:0008152
GO:0046855	GO:0005975	AI	D	664967	inositol phosphate dephosphorylation
          	GO:0008152
GO:0046856	GO:0006629	AI	D	664967	phosphoinositide dephosphorylation
          	GO:0008152


New obsoletions in process ontology
GO:0009402, toxin resistance: 'resistance' implies a phenotype rather than a biological process.


Term name changes in process ontology
GO:0000209: polyubiquitination --> protein polyubiquitination
GO:0001732: formation of the translation initiation complex. --> formation of translation initiation complex
GO:0006513: monoubiquitination --> protein monoubiquitination
GO:0007425: tracheal determination --> tracheal cell fate determination (sensu Insecta)
GO:0007426: tracheal outgrowth --> tracheal outgrowth (sensu Insecta)
GO:0007427: tracheal cell migration --> tracheal cell migration (sensu Insecta)
GO:0007428: primary tracheal branching --> primary tracheal branching (sensu Insecta)
GO:0007429: secondary tracheal branching --> secondary tracheal branching (sensu Insecta)
GO:0007430: terminal branching of trachea, cytoplasmic projection extension --> terminal branching of trachea, cytoplasmic projection extension (sensu Insecta)
GO:0019615: catechol 'ortho-cleavage' --> catechol catabolism, ortho-cleavage
GO:0019616: catechol 'meta-cleavage' --> catechol catabolism, meta-cleavage
GO:0019617: protocatechuate 'meta-cleavage' --> protocatechuate catabolism, meta-cleavage
GO:0019618: protocatechuate 'ortho-cleavage' --> protocatechuate catabolism, ortho-cleavage


New definitions for process ontology terms (47 new definitions)
GO:0001562, response to protozoa
GO:0006119, oxidative phosphorylation
GO:0006513, protein monoubiquitination
GO:0006869, lipid transport
GO:0006968, cellular defense response
GO:0006974, response to DNA damage
GO:0006986, response to unfolded protein
GO:0007424, tracheal system development (sensu Insecta)
GO:0007425, tracheal cell fate determination (sensu Insecta)
GO:0007426, tracheal outgrowth (sensu Insecta)
GO:0007427, tracheal cell migration (sensu Insecta)
GO:0007428, primary tracheal branching (sensu Insecta)
GO:0007429, secondary tracheal branching (sensu Insecta)
GO:0007430, terminal branching of trachea, cytoplasmic projection extension (sensu Insecta)
GO:0009254, peptidoglycan turnover
GO:0009402, toxin resistance
GO:0009592, perception of sound
GO:0009593, perception of chemical substance
GO:0009594, perception of nutrients
GO:0009606, tropism
GO:0009638, phototropism
GO:0009652, thigmotropism
GO:0009723, response to ethylene stimulus
GO:0009725, response to hormone stimulus
GO:0009733, response to auxin stimulus
GO:0009735, response to cytokinin stimulus
GO:0009737, response to abscisic acid stimulus
GO:0009739, response to gibberellic acid stimulus
GO:0009741, response to brassinosteroid stimulus
GO:0009743, response to carbohydrate stimulus
GO:0009744, response to sucrose stimulus
GO:0009746, response to hexose stimulus
GO:0009749, response to glucose stimulus
GO:0009750, response to fructose stimulus
GO:0009751, response to salicylic acid stimulus
GO:0009753, response to jasmonic acid stimulus
GO:0009875, pollen-pistil interaction
GO:0009961, response to 1-aminocyclopropane-1-carboxylic acid
GO:0016066, cellular defense response (sensu Vertebrata)
GO:0016067, cellular defense response (sensu Invertebrata)
GO:0016280, senescence
GO:0016567, protein ubiquitination
GO:0016579, protein deubiquitination
GO:0019236, response to pheromone
GO:0019882, antigen presentation
GO:0030383, host-pathogen interaction
GO:0042087, cell-mediated immune response


New term merges in process ontology
GO:0006514 has been merged into GO:0016579, protein deubiquitination


Term movements in process ontology:
Terms movements under GO Slim term 'protein modification ; GO:0006464'
+ GO:0000209, protein polyubiquitination
+ GO:0006513, protein monoubiquitination

Terms movements under GO Slim term 'physiological processes ; GO:0007582'
+ GO:0001503, ossification
+ GO:0001649, osteoblast differentiation
+ GO:0030278, regulation of bone formation
+ GO:0030279, negative regulation of bone formation
+ GO:0030282, bone mineralization
+ GO:0030500, regulation of bone mineralization
+ GO:0030501, positive regulation of bone mineralization
+ GO:0030502, negative regulation of bone mineralization
+ GO:0045667, regulation of osteoblast differentiation
+ GO:0045668, negative regulation of osteoblast differentiation
+ GO:0045669, positive regulation of osteoblast differentiation
+ GO:0045778, positive regulation of bone formation

Terms movements under GO Slim term 'metabolism ; GO:0008152'
- GO:0009402, toxin resistance

Terms movements under GO Slim term 'response to abiotic stimulus ; GO:0009628'
- GO:0009402, toxin resistance



SourceForge items closed this month:

SF id	Resolution	SF item title	GO ids added, if any
580540	Fixed	Comments for obsoleted terms	[none]
598477	Accepted	True Path Violation - Intercellular Canaliculus	GO:0046581
643573	None	Protein synthesis initiation	GO:0001731-01732
661075	Accepted	basal lamina	[none]
661813	None	TAIR function terms	GO:0009973-09985
663182	Works For Me	chloroplast membrane, integral to chloroplast membrane	[none]
664043	Fixed	typo in GO:45462	[none]
664053	Accepted	aspartyl aminopeptidase	GO:0042576
664312	Accepted	trisporic acid biosynthesis	GO:0046841-46842
664457	Fixed	glycolipid transfer ; GO:0017089	GO:0046836
664962	Accepted	child terms of lipid kinase ; GO:0001727	GO:0042577
664967	Accepted	lipid phosphorylation/dephosphorylation	GO:0046834-46835 GO:0046837-46840 GO:0046853-46856
665131	Accepted	regulation of nucleocytoplasmic transport	GO:0046822-46833
665370	None	add term for EC 2.1.1.71	GO:0000773
665630	Accepted	filopodium formation	GO:0046847
665784	Accepted	tracheal system development (sensu Insecta)	GO:0046845-46846
665849	Accepted	dorsal appendage formation	GO:0046843-46844
667678	Accepted	hydroxyapatite binding	GO:0046848-46852
668409	Rejected	Hydrogenosome	GO:0042566
668448	Accepted	mannosome	GO:0042580
668952	Works For Me	membrane fraction as an instance of membrane	[none]
669029	Accepted	microbody	GO:0042579
671091	Accepted	outer surface of cytoplasmic membrane	[none]
677062	None	mRNA n6 methylase	GO:0001734
677712	None	True path violation of protein phosphatase, regulator terms	[none]




Statistics:
Component: 1160 terms, 72.1% defined (836 terms defined)
Function: 5327 terms, 57.2% defined (3049 terms defined)
Process: 6891 terms, 79.6% defined (5487 terms defined)
Total: 13378 terms, 70.1% defined (9372 terms defined)


Term errors
GO:0009929, cell surface (sensu Magnoliophyta)
- definition removed