GO Cardiovascular: Useful Links
General links
- Cardiovascular GO Annotation Initiative : Home page for the Cardiovascular GO Annotation Initiative
- GO Consortium : Home page for the GO consortium
- GO Annotation Guide: Guide to annotating with GO terms, important for annotation consistency
- GO Evidence Codes : Guide to GO evidence codes
- UniProtKB-GOA database : UniProtKB-Gene Ontology Annotation database at EBI home page, download from the UniProtKB-GOA ftp site, see statistics and release news
- BHF-UCL list of 4000 cardiovascular-associated genes
- Cardiovascular-associated genes prioritised for annotation by the Cardiovascular GO Annotation Initiative
Cardiovascular GO Annotation Initiative Newsletter
- Issue 22, August 2013
- Issue 21, April 2013
- Issue 20, January 2013
- Issue 19, October 2012
- Issue 18, July 2012
- Issue 17, April 2012
- Issue 16, Jan 2012
- Issue 15, Oct 2011
- Issue 14, July 2011
- Issue 13, April 2011
- Issue 12, January 2011
- Issue 11, October 2010
- Issue 10, July 2010
- Issue 9, April 2010
- Issue 8, January 2010
- Issue 7, October 2009
- Issue 6, July 2009
- Issue 5, April 2009
- Issue 4, January 2009
- Issue 3, October 2008
- Issue 2, July 2008
- Issue 1, April 2008
Outreach
- Cardiovascular feedback page : Enables scientists to register to receive the Cardiovascular GO Annotation Initiative quarterly Newsletter, to submit genes to the cardiovascular priority list, agree to review the annotation of a specific gene, or suggest publications for annotation.
- Email GOAnnotation@ucl.ac.uk (the cardiovascular annotation team)
- SourceForge Request Tracker : Login and request ontology amendments with the GO editorial office
GO tools
GO browsers
- QuickGO : Search and display GO terms or GO annotations via specific UniProtKB accessions, more functionality coming soon
- AmiGO : developed by the GO Consortium for searching, browsing and performing various analyses on GO term and annotations.
Sequence searches
- Sequence Retrieval Service (SRS) : Database search tool to query GO, UniProtKB-GOA, UniProtKB, IPI allowing the linking of datasets and the creation of customised views
- Integr8 : Features include ability to search for sequences associated with a particular GO:ID
- Entrez Gene : NCBI search tool, used to find gene records with wide range of annotations and links including GO
- Mouse Genome Informatics : MGI search tool, use to find gene record with wide range of annotations and links
- UniProt : UniProt Consortium search tool, can query UniProtKB, UniParc and UniRef
BLAST searches
- AmiGO Blast : BLAST search shows the associated GO terms for each hit. Useful for finding GO terms associated with homologues
- MPsrch : BLAST search which returns UniProtKB/UniParc/IPI accession IDs
- NCBI BLASTP : Protein BLAST with options for UniProtKB/SwissProt or NCBI database search
Literature search tools
- CiteXplore : Literature search and text mining tool. Can highlight abstracts to show potential GO terms and links gene names to UniProtKB records, a quick way of finding accessions.
- Whatizit : Can paste in any text for highlighting with potential GO terms and links gene names to UniProtKB records
Mapping tools
- iHOP : Links together protein information; search using gene symbol or accession ID.
- GOPubMed : Literature search which uses a GO to Mesh manual mapping, GO terms highlighted in abstracts, useful statistics for identifying immune gene experts
- GO Term Finder : Find significant GO terms shared among a list of genes from your organism.
- GO Term Mapper : Map granular GO annotations for genes in a list to a set of broader high-level GO term parents, allowing you to bin your genes into broad categories
For more annotation and gene expression analysis tools, please see the GO tools pages.