GO Annotation File Example
The file format of a gene association file, along with sample annotations, is shown below. Red text denotes required fields; the rows with column numbers are not part of the file, but are included here for convenience in viewing.
In the annotation files, each annotation (association of a single gene product with a single GO term) takes up one line, so the contents columns 1 through 15 would appear on a single line. They have been split up here for ease of viewing.
|
1.
Database (DB) [required] |
2.
DB Object ID [required] |
3.
DB Object Symbol [required] |
4.
Qualifier [optional] |
5.
GO ID [required] |
|---|---|---|---|---|
| SGD | S000000296 | PHO3 | GO:0006796 | |
| SGD | S000000296 | PHO3 | GO:0003993 | |
| SGD | S000005370 | RCL1 | NOT | GO:0003963 |
| SGD | S000005197 | TEX1 | GO:0006406 | |
| SGD | S000005316 | ABZ1 | GO:0046820 |
|
6.
DB:Reference (|DB:Reference) [required] |
7.
Evidence Code [required] |
8.
With/From [optional] |
9.
Aspect [required] |
10.
DB Object Name (|Name) [optional] |
|---|---|---|---|---|
| SGD_REF:S000047115|PMID:2407294 | TAS | P | acid phosphatase | |
| SGD_REF:S000047115|PMID:2407294 | IMP | F | acid phosphatase | |
| SGD_REF:S000039255|PMID:10790377 | IDA | F | ||
| SGD_REF:S000069956|PMID:11979277 | IC | GO:0000346 | P | |
| SGD_REF:S000057703|PMID:8346682 | ISS | CGSC:pabA|CGSC:pabB | F | aminodeoxychorismate synthase |
|
11.
DB Object Synonym (|Synonym) [optional] |
12.
DB Object Type [required] |
13.
Taxon (|Taxon) [required] |
14.
Date [required] |
15.
Assigned by [required] |
|---|---|---|---|---|
| YBR092C | gene | taxon:4932 | 20010118 | SGD |
| YBR092C | gene | taxon:4932 | 20041220 | SGD |
| YOL010W | gene | taxon:4932 | 20020530 | SGD |
| YNL253W | gene | taxon:4932 | 20030221 | SGD |
| YNR033W | gene | taxon:4932 | 20030106 | SGD |
The above entries as they appear in the actual file:
SGD S000000296 PHO3 GO:0003993 SGD_REF:S000047763|PMID:2407294 IMP F acid phosphatase YBR092C gene taxon:4932 20010118 SGD SGD S000000296 PHO3 GO:0006796 SGD_REF:S000047115|PMID:2407294 TAS P acid phosphatase YBR092C gene taxon:4932 20041220 SGD SGD S000005370 RCL1 NOT GO:0003963 SGD_REF:S000039255|PMID:10790377 IDA F YOL010W gene taxon:4932 20020530 SGD SGD S000005197 TEX1 GO:0006406 SGD_REF:S000069956|PMID:11979277 IC GO:0000346 P YNL253W gene taxon:4932 20030221 SGD SGD S000005316 ABZ1 GO:0046820 SGD_REF:S000057703|PMID:8346682 ISS CGSC:pabA|CGSC:pabB F aminodeoxychorismate synthase YNR033W gene taxon:4932 20030106 SGD