GO:0006309 could have a more specific intersection parent if there was a DNA fragmentation term: I have been working on this, but the edit was quite complicated. I did it in oboedit and some bugs meant that it is not yet finished. It is checked in in the edit file. [Term] id: GO:0006309 ! DNA fragmentation during apoptosis def: "The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments." [GOC:mah, ISBN:0721639976] intersection_of: GO:0006308 ! DNA catabolic process def: "The chemical reactions and pathways resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one." [GOC:go_curators, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] intersection_of: part_of GO:0006915 ! apoptosis def: "A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface." [GOC:go_curators, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] Use of 'induction' here I think is much more general in GO:0006917 than in GO:0031128 ![Term] !id: GO:0006917 ! induction of apoptosis def: "A process that directly activates any of the steps required for cell death by apoptosis." [GOC:go_curators] !intersection_of: GO:0031128 ! induction def: "Signaling at short range between cells or tissues of different ancestry and developmental potential that results in one cell or tissue effecting a developmental change in the other." [GOC:mah] !intersection_of: positively_regulates GO:0006915 ! apoptosis def: "A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposure of phosphatidyl serine on the cell surface." [GOC:go_curators, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] I'm not sure about this one: [Term] id: GO:0030399 ! autophagic membrane disassembly def: "The controlled breakdown of the membranes of autophagic vacuoles." [GOC:mah] intersection_of: GO:0030397 ! membrane disassembly def: "The controlled breakdown of any cell membrane in the context of a normal process such as autophagy." [GOC:mah] intersection_of: part_of GO:0006914 ! autophagy def: "The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation." [ISBN:0198547684, PMID:11099404, PMID:9412464] perhaps this one should be sporulation + asexual reproduction [Term] id: GO:0030436 ! asexual sporulation def: "The formation of spores derived from the products of mitosis." [GOC:mah, PMID:9529886] intersection_of: GO:0030435 ! sporulation def: "The process by which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction." [GOC:mah, GOC:pamgo_08, ISBN:0072992913] intersection_of: part_of GO:0007067 ! mitosis def: "Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother." [GOC:ma, ISBN:0198547684] also for: [Term] id: GO:0034293 ! sexual sporulation def: "The formation of spores derived from the products of meiosis." [GOC:mah] intersection_of: GO:0030435 ! sporulation def: "The process by which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction." [GOC:mah, GOC:pamgo_08, ISBN:0072992913] intersection_of: part_of GO:0007126 ! meiosis def: "Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations." [PMID:9334324] for things like behavioral response to nicotine part_of behavior, shouldn't it be is_a behavior? this one should be to the plant cell wall term rather than to the generic cell wall term: [Term] id: GO:0052546 ! cellulose and pectin-containing cell wall pectin metabolic process def: "The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall." [GOC:ai] intersection_of: GO:0045488 ! pectin metabolic process def: "The chemical reactions and pathways involving pectin, a group of galacturonic acid-containing, water-soluble colloidal carbohydrates of high molecular weight and of net negative charge." [GOC:tair_curators] intersection_of: part_of GO:0007047 ! cell wall organization and biogenesis def: "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis." [GOC:dph, GOC:jl, GOC:mah, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] not sure about this one: [Term] id: GO:0060085 ! smooth muscle relaxation of the bladder outlet def: "Any process that stops, prevents or reduces the frequency, rate or extent of smooth muscle contraction in the bladder outlet that contributes to the expulsion of urine from the body." [GOC:dph, PMID:15827347] intersection_of: GO:0007268 ! synaptic transmission def: "The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse." [GOC:jl, MeSH:D009435] intersection_of: part_of GO:0060073 ! micturition def: "The regulation of body fluids process by which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body." [GOC:dph] not sure: [Term] id: GO:0000755 ! cytogamy def: "During conjugation with cellular fusion, the process resulting in creating a single cell from complementary mating types. The localized remodeling and dissolution of external protective structures allow the fusion of the plasma membranes and cytoplasmic mixing." [GOC:elh] intersection_of: GO:0022413 ! reproductive process in single-celled organism def: "A process, occurring at the cellular level, that is involved in the reproductive function of a single-celled organism." [GOC:isa_complete] intersection_of: part_of GO:0000747 ! conjugation with cellular fusion def: "A conjugation process that results in the union of cellular and genetic information from compatible mating types." [GOC:elh] perhaps too specific: [Term] id: GO:0001998 ! angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure def: "The decrease in blood vessel diameter as a result of the release of angiotensin into the blood stream." [GOC:mtg_cardio, ISBN:0721643949 "Textbook of Medical Physiology"] intersection_of: GO:0042310 ! vasoconstriction def: "A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure." [ISBN:0192800752] intersection_of: part_of GO:0002034 ! regulation of blood vessel size by renin-angiotensin def: "The process where the diameter of a blood vessel is changed due to activity of the renin-angiotensin system." [GOC:dph, GOC:tb] not sure: [Term] id: GO:0002006 ! vasoconstriction by vasopressin involved in systemic arterial blood pressure control def: "The decrease in blood vessel diameter as a result of the release of vasopressin into the blood stream." [GOC:dph, GOC:mtg_cardio, GOC:tb, ISBN:0721643949 "Textbook of Medical Physiology"] intersection_of: GO:0042310 ! vasoconstriction def: "A decrease in the diameter of blood vessels, especially arteries, usually causing an increase in blood pressure." [ISBN:0192800752] intersection_of: part_of GO:0001992 ! regulation of systemic arterial blood pressure by vasopressin def: "The regulation of blood pressure mediated by the signaling molecule vasopressin. Vasopressin is produced in the hypothalamus, and affects vasoconstriction, and renal water transport." [GOC:mtg_cardio, ISBN:0721643949 "Textbook of Medical Physiology"] not sure: [Term] id: GO:0002033 ! vasodilation by angiotensin involved in regulation of systemic arterial blood pressure def: "The process that increases the size of a blood vessel via the renin-angiotensin system." [ISBN:0323031951 "Principles of Physiology", PMID:10425188] intersection_of: GO:0042311 ! vasodilation def: "An increase in the internal diameter of blood vessels, especially arterioles or capillaries, usually resulting in a decrease in blood pressure." [ISBN:0192800981] intersection_of: part_of GO:0002034 ! regulation of blood vessel size by renin-angiotensin def: "The process where the diameter of a blood vessel is changed due to activity of the renin-angiotensin system." [GOC:dph, GOC:tb] too specific: [Term] id: GO:0002275 ! myeloid cell activation during immune response def: "A change in the morphology or behavior of a myeloid cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response." [GOC:add, ISBN:0781735149 "Fundamental Immunology"] intersection_of: GO:0002274 ! myeloid leukocyte activation def: "A change in the morphology or behavior of a myeloid leukocyte resulting from exposure to an activating factor such as a cellular or soluble ligand." [GOC:add, ISBN:0781735149 "Fundamental Immunology"] intersection_of: part_of GO:0006955 ! immune response def: "Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GOC:add, GOC:mtg_15nov05] should be regulated by: [Term] id: GO:0006985 ! positive regulation of NF-kappaB transcription factor activity by ER overload response def: "The conversion of inactive NF-kappaB to the active form, thereby allowing it to activate transcription of target genes, as a result of signaling from the endoplasmic reticulum." [GOC:dph, GOC:mah, GOC:tb, PMID:10390516] intersection_of: GO:0051092 ! positive regulation of NF-kappaB transcription factor activity def: "Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB." [GOC:dph, GOC:tb, PMID:15087454, PMID:15170030] intersection_of: part_of GO:0006983 ! ER overload response def: "The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB." [PMID:10390516] perhaps should just be chromosome segregation + male meiosis. [Term] id: GO:0007060 ! male meiosis chromosome segregation def: "The cell cycle process whereby genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during the meiotic cell cycle in a male." [GOC:ai] intersection_of: GO:0045132 ! meiotic chromosome segregation def: "The process by which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during the meiotic cell cycle." [GOC:ai] intersection_of: part_of GO:0007140 ! male meiosis def: "Progression through the nuclear division phase of a meiotic cell cycle in the male germline." [GOC:mah] same: [Term] id: GO:0007065 ! male meiosis sister chromatid cohesion def: "The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a male." [GOC:ai] intersection_of: GO:0051177 ! meiotic sister chromatid cohesion def: "The cell cycle process whereby sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis." [GOC:ai] intersection_of: part_of GO:0007140 ! male meiosis def: "Progression through the nuclear division phase of a meiotic cell cycle in the male germline." [GOC:mah] same: [Term] id: GO:0007066 ! female meiosis sister chromatid cohesion def: "The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a female." [GOC:ai] intersection_of: GO:0051177 ! meiotic sister chromatid cohesion def: "The cell cycle process whereby sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis." [GOC:ai] intersection_of: part_of GO:0007143 ! female meiosis def: "Progression through the nuclear division phase of a meiotic cell cycle in the female germline." [GOC:ems, GOC:mah] should be negatively regulates premature neural plate formation. ![Term] !id: GO:0002085 ! repression of premature neural plate formation def: "The process that prevents cells of the epiblast from differentiating into neuroepithelial cells before the appropriate time." [GOC:dph, PMID:16678814] !intersection_of: GO:0065007 ! biological regulation def: "Any process that modulates the frequency, rate or extent of any biological process, quality or function." [GOC:isa_complete] !intersection_of: negatively_regulates GO:0021990 ! neural plate formation def: "The formation of the flat, thickened layer of ectodermal cells known as the neural plate. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system." [GOC:cls, GOC:dgh, GOC:dph, GOC:jic, GOC:mtg_15jun06, ISBN:0878932437, ISBN:0878932585, PMID:15806586] should be 'systemic arterial blood pressure' regulated_by renal system process? [Term] id: GO:0003071 ! regulation of systemic arterial blood pressure by renal system process def: "Renal process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." [GOC:dph, GOC:mtg_cardio, GOC:tb] intersection_of: GO:0003073 ! regulation of systemic arterial blood pressure def: "The process that modulates the force with which blood travels through the systemic arterial circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." [GOC:mtg_cardio] intersection_of: has_part GO:0003014 ! renal system process def: "A organ system process carried out by any of the organs or tissues of the renal system. The renal system is responsible for fluid volume regulation and detoxification in an organism." [GOC:mtg_cardio] this one is backwards from the other behaviors: [Term] id: GO:0035187 ! hatching behavior def: "The specific actions or reactions of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell." [PMID:10436051] intersection_of: GO:0007610 ! behavior def: "The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." [GOC:ems, ISBN:0395448956] intersection_of: part_of GO:0035188 ! hatching def: "The emergence of an organism from a protective structure." [GOC:isa_complete, ISBN:0198612001] also this: [Term] id: GO:0048512 ! circadian behavior def: "The specific actions or reactions of an organism that recur with a regularity of approximately 24 hours." [GOC:bf, GOC:go_curators] intersection_of: GO:0007610 ! behavior def: "The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." [GOC:ems, ISBN:0395448956] intersection_of: part_of GO:0007623 ! circadian rhythm def: "Any biological process in an organism that recur with a regularity of approximately 24 hours." [GOC:bf, GOC:go_curators] also: [Term] id: GO:0051705 ! behavioral interaction between organisms def: "Any process by which an organism has a behavioral effect on another organism of the same or different species." [GOC:ai] intersection_of: GO:0051704 ! multi-organism process def: "Any process by which an organism has an effect on another organism of the same or different species." [GOC:ai] intersection_of: has_part GO:0007610 ! behavior def: "The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." [GOC:ems, ISBN:0395448956] should be positive regulation: [Term] id: GO:0000186 ! activation of MAPKK activity def: "The initiation of the activity of the inactive enzyme MAP kinase kinase by phosphorylation by a MAPKKK." [PMID:9561267] intersection_of: GO:0065007 ! biological regulation def: "Any process that modulates the frequency, rate or extent of any biological process, quality or function." [GOC:isa_complete] intersection_of: OBO_REL:activates GO:0004708 ! MAP kinase kinase activity def: "Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in MAP kinases. It is a dual-specificity mitogen-activated protein kinase kinase and requires activation by the serine/threonine kinase, MAP kinase kinase kinase." [ISBN:0198547684] also: [Term] id: GO:0002218 ! activation of innate immune response def: "Any process that initiates an innate immune response." [GOC:add, GOC:mtg_15nov05, GOC:mtg_sensu, ISBN:0781735149 "Fundamental Immunology", PMID:15199967, PMID:16177805] intersection_of: GO:0065007 ! biological regulation def: "Any process that modulates the frequency, rate or extent of any biological process, quality or function." [GOC:isa_complete] intersection_of: OBO_REL:activates GO:0045087 ! innate immune response def: "Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu] also: [Term] id: GO:0002253 ! activation of immune response def: "Any process that initiates an immune response." [GOC:add, GOC:mtg_15nov05, ISBN:0781735149 "Fundamental Immunology"] intersection_of: GO:0065007 ! biological regulation def: "Any process that modulates the frequency, rate or extent of any biological process, quality or function." [GOC:isa_complete] intersection_of: OBO_REL:activates GO:0006955 ! immune response def: "Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GOC:add, GOC:mtg_15nov05] =========================================== Escalate -------- This term has is_a to the genus and part_of to the differentium already so I think we could just delete this XP. Would that be right? [Term] id: GO:0048870 ! cell motility def: "Any process involved in the controlled movement of a cell that results in translocation of the cell from one place to another." [GOC:dgh, GOC:dph, GOC:isa_complete, GOC:mlg] intersection_of: GO:0006928 ! cell motion def: "Any process involved in the controlled movement of a cell." [GOC:dgh, GOC:dph, GOC:jl, GOC:mlg] intersection_of: part_of GO:0040011 ! locomotion def: "Self-propelled movement of a cell or organism from one location to another." [GOC:dgh] leave in unvetted list --------------- The ols doesn't have a term for exgenous. ---------------- Should we resolve these univocity issues? univocity: cell structure disassembly v. cell component disassembly univocity: injury v. wounding univocity: differentiation v. cell differentation univocity: cell movement v. cell motility v. cell locomotion univocity: chemorepulsion v. negative chemotaxis univocity: chemoattraction v. positive chemotaxis univocity: peptide formation v. peptide biosynthetic process univocity: developmental pigmentation v. pigmentation during development univocity: mitochondrial fragmentation v. mitochondiral fission univocity: amino acid uptake v. amino acid import univocity: callose deposition v. callose localization univocity: organ development v. organogenesis univocity: DNA replication and synthesis ------------------ there are a lot of durings that should be involved ins. should we have an actual 'involved_in' relationship. Currently part_of is being used for both involved_in and the misused 'during' seen in terms names. ------------------- how does osmolarity sensing relate to osmosensory signaling and response to osmotic change. ------------------ Digestion: [Term] id: GO:0048546 ! digestive tract morphogenesis def: "The process by which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the tube extending from the mouth to the anus, including the pharynx, esophagus, stomach, and intestines." [GOC:go_curators, PMID:12618131] intersection_of: GO:0035239 ! tube morphogenesis def: "The process by which the anatomical structures of a tube are generated and organized. Morphogenesis pertains to the creation of form. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GOC:bf, PMID:14624839] intersection_of: part_of GO:0007586 ! digestion def: "The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:isa_complete, ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] Should it be something like digestive system process dependent on digestive system development digestion dependent on digestive system development I have added a top term digestive system development and made links. ------------------- cell differentation to process? This one should clearly have the pigment cell/cell differentiation combination, but does it really make sense to say something like pigmentation is_dependent_on pigment cell differentation? [Term] id: GO:0050931 ! pigment cell differentiation def: "The process whereby a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte." [GOC:dgh] intersection_of: GO:0030154 ! cell differentiation def: "The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] intersection_of: part_of GO:0043473 ! pigmentation def: "The deposition or aggregation of coloring matter in an organism, tissue or cell." [GOC:jl] ---------------------------- Have written to Chris to ask where underscores came from and if there is anything more complicated going on. [Term] id: GO:0051415 ! interphase microtubule nucleation by interphase microtubule organizing center def: "The 'de novo' formation of a microtubule by the interphase microtubule organizing center during interphase, the stage of cell cycle between successive rounds of chromosome segregation." [GOC:ai] intersection_of: GO:0007020 ! microtubule nucleation def: "The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell." [ISBN:0815316194] intersection_of: part_of interphase_by_interphase_microtubule_organizing_center ----------------------------- maybe ends_in interval based relationship state that two processes have the same end. precedes implies that the seed dormancy is after the end of embryonic development, when in fact it is the last stage of it. Perhaps this should use the relationship 'ending_in' or similar? [Term] id: GO:0009793 ! embryonic development ending in seed dormancy intersection_of: GO:0009790 ! embryonic development intersection_of: OBO_REL:precedes GO:0010162 ! seed dormancy ------------------------------- Some of the behavior terms are oddly put together. Need to discuss how best to set out the relationship. vc [Term] id: GO:0001662 ! behavioral fear response intersection_of: GO:0042596 ! fear response intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0002209 ! behavioral defense response intersection_of: GO:0006952 ! defense response intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0002210 ! behavioral response to wounding intersection_of: GO:0009611 ! response to wounding intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0002211 ! behavioral defense response to insect intersection_of: GO:0002213 ! defense response to insect intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0002212 ! behavioral defense response to nematode intersection_of: GO:0002215 ! defense response to nematode intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0007626 ! locomotory behavior intersection_of: GO:0007610 ! behavior intersection_of: part_of GO:0040011 ! locomotion [Term] id: GO:0007631 ! feeding behavior intersection_of: GO:0032094 ! response to food intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0007635 ! chemosensory behavior intersection_of: GO:0042221 ! response to chemical stimulus intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0007638 ! mechanosensory behavior intersection_of: GO:0009612 ! response to mechanical stimulus intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0019098 ! reproductive behavior intersection_of: GO:0007610 ! behavior intersection_of: part_of GO:0000003 ! reproduction [Term] id: GO:0035095 ! behavioral response to nicotine intersection_of: GO:0035094 ! response to nicotine intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0040040 ! thermosensory behavior intersection_of: GO:0009266 ! response to temperature stimulus intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0042595 ! behavioral response to starvation intersection_of: GO:0042594 ! response to starvation intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0042630 ! behavioral response to water deprivation intersection_of: GO:0009414 ! response to water deprivation intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0048148 ! behavioral response to cocaine intersection_of: GO:0042220 ! response to cocaine intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0048149 ! behavioral response to ethanol intersection_of: GO:0045471 ! response to ethanol intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0048150 ! behavioral response to ether intersection_of: GO:0045472 ! response to ether intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0048266 ! behavioral response to pain intersection_of: GO:0048265 ! response to pain intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0051780 ! behavioral response to nutrient intersection_of: GO:0007584 ! response to nutrient intersection_of: part_of GO:0007610 ! behavior [Term] id: GO:0035187 ! hatching behavior intersection_of: GO:0007610 ! behavior intersection_of: part_of GO:0035188 ! hatching [Term] id: GO:0048512 ! circadian behavior intersection_of: GO:0007610 ! behavior intersection_of: part_of GO:0007623 ! circadian rhythm [Term] id: GO:0051705 ! behavioral interaction between organisms intersection_of: GO:0051704 ! multi-organism process intersection_of: has_part GO:0007610 ! behavior ------------------------------- Can we make a relationship called 'attained_via' or 'via'. maybe it should be has_part [Term] id: GO:0000720 ! pyrimidine dimer repair via nucleotide-excision repair intersection_of: GO:0006290 ! pyrimidine dimer repair intersection_of: OBO_REL:regulated_by GO:0006289 ! nucleotide-excision repair [Term] id: GO:0022417 ! protein maturation via protein folding def: "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that results in the attainment of the full functional capacity of a protein." [GOC:isa_complete] intersection_of: GO:0051604 ! protein maturation def: "The process leading to the attainment of the full functional capacity of a protein." [GOC:ai] intersection_of: OBO_REL:regulated_by GO:0006457 ! protein folding def: "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure." [GOC:go_curators, GOC:rb] this one should be attained_by rather than regulated by: [Term] id: GO:0051605 ! protein maturation via proteolysis def: "The hydrolysis of a peptide bond or bonds within a protein during protein maturation, the process leading to the attainment of the full functional capacity of a protein." [GOC:ai] intersection_of: GO:0051604 ! protein maturation def: "The process leading to the attainment of the full functional capacity of a protein." [GOC:ai] intersection_of: OBO_REL:regulated_by GO:0006508 ! proteolysis