See: http://wiki.geneontology.org/index.php/Transitive_closure contents: * go_transitive_closure.links results of running obo2linkfile on core GO * go_transitive_closure-extended.links results of running obo2linkfile on core GO + extended relations. The extended relations include indirectly_regulates etc. They are never asserted in the GO, only implied * extended_relations.obo