Ontology Comparison Report

Files used:

file 1 (old): go-2011-05-22.obo; date: 19:05:2011 18:21; CVS revision: 1.1988
file 2 (new): go-2011-05-29.obo; date: 26:05:2011 16:18; CVS revision: 1.1998

New terms

ID	name	namespace
GO:0035862	dITP metabolic process	biological_process
GO:0035863	dITP catabolic process	biological_process
GO:0035864	response to potassium ion	biological_process
GO:0035865	cellular response to potassium ion	biological_process
GO:0035866	alphav-beta3 integrin-PKCalpha complex	cellular_component
GO:0035867	alphav-beta3 integrin-IGF-1-IGF1R complex	cellular_component
GO:0035868	alphav-beta3 integrin-HMGB1 complex	cellular_component
GO:0035869	ciliary transition zone	cellular_component
GO:0035870	dITP diphosphatase activity	molecular_function
GO:0035871	protein K11-linked deubiquitination	biological_process
GO:0035872	nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway	biological_process
GO:0052691	UDP-arabinopyranose mutase activity	molecular_function
GO:0052692	raffinose alpha-galactosidase activity	molecular_function
GO:0052693	epoxyqueuosine reductase activity	molecular_function
GO:0097052	L-kynurenine metabolic process	biological_process
GO:0097053	L-kynurenine catabolic process	biological_process
GO:0097054	L-glutamate biosynthetic process	biological_process
GO:0097055	agmatine biosynthetic process	biological_process
GO:0097056	selenocysteinyl-tRNA(Sec) biosynthetic process	biological_process
GO:0097057	TRAF2-GSTP1 complex	cellular_component
GO:0097058	CRLF-CLCF1 complex	cellular_component
GO:0097059	CNTFR-CLCF1 complex	cellular_component

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed

Changes in term-related data
Term ID	name	def	comment	synonym	xref	is_a	intersection_of	consider
Term ID	name	def	comment	synonym	xref	is_a	intersection_of	consider
GO:0003141 transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry							2 A
GO:0004564 beta-fructofuranosidase activity				8 A, 9 D
GO:0004575 sucrose alpha-glucosidase activity				5 A, 6 D
GO:0005035 death receptor activity		C		1 A
GO:0005040 decoy death receptor activity		C				1 A, 1 D
GO:0005615 extracellular space			C
GO:0007165 signal transduction		C
GO:0007259 JAK-STAT cascade		C
GO:0008220 necrosis								1 A
GO:0021908 retinoic acid receptor signaling pathway involved in spinal cord anterior/posterior pattern formation							2 A
GO:0023004 activation of dopamine receptor signaling pathway		C
GO:0023036 initiation of signal transduction		C
GO:0023050 consequence of signal transmission		C
GO:0023052 signaling		C
GO:0023055 signal initiation by peptide hormone		C
GO:0023058 adaptation of signaling pathway		C
GO:0023059 positive adaptation of signaling pathway		C
GO:0023061 signal release		C
GO:0033537 ajugose biosynthetic process using galactinol:raffinose galactosyltransferase		C
GO:0033739 preQ1 synthase activity	C			3 A, 2 D
GO:0035463 transforming growth factor beta receptor signaling pathway involved in determination of left/right asymmetry							2 A
GO:0035556 intracellular signal transduction		C
GO:0035557 intracellular signal transduction involved in cell surface receptor linked signaling		C
GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling		C
GO:0035559 MAPKKK cascade involved in epidermal growth factor receptor signaling		C
GO:0035567 non-canonical Wnt receptor signaling pathway		C		1 A, 1 D
GO:0035576 retinoic acid receptor signaling pathway involved in pronephric field specification							2 A
GO:0042035 regulation of cytokine biosynthetic process						1 A
GO:0042036 negative regulation of cytokine biosynthetic process						1 A
GO:0042108 positive regulation of cytokine biosynthetic process						1 A
GO:0044338 canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation							2 A
GO:0047151 methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity		C			1 A
GO:0060227 Notch signaling pathway involved in camera-type eye photoreceptor fate commitment							2 A
GO:0060835 transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification							2 A
GO:0061290 canonical Wnt receptor signaling pathway involved in metanephric kidney development							2 A
GO:0061311 cell surface receptor linked signaling pathway involved in heart development							2 A
GO:0061312 BMP signaling pathway involved in heart development							2 A
GO:0061313 fibroblast growth factor receptor signaling pathway involved in heart development							2 A
GO:0061314 Notch signaling involved in heart development							2 A
GO:0061316 canonical Wnt receptor signaling pathway involved in heart development							2 A
GO:0061317 canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment							2 A
GO:0061341 non-canonical Wnt receptor signaling pathway involved in heart development							2 A
GO:0061372 activin receptor signaling pathway involved in heart jogging							2 A
GO:0070423 nucleotide-binding oligomerization domain containing signaling pathway						2 A, 1 D

File Stats

Term counts for the old and new files
Ontology	Old file	New file	Change
molecular function	9010 9010 defined	9014 9014 defined
cellular component	2833 2833 defined	2840 2840 defined
biological process	20768 20768 defined	20779 20779 defined
Obsolete	1559 (4.6%)	1559 (4.6%)	0 (0.0%)
Totals	34170 32611 (95.4%) defined	34192 32633 (95.4%) defined	+22 (+0.1%) +22 (+0.1%) defined