Gene Ontology: Ontology Comparison Report

Files used:

  • file 1 (old): go-2012-01-07.obo; date: 06:01:2012 16:33; CVS revision: 1.2481
  • file 2 (new): go-2012-01-14.obo; date: 13:01:2012 15:54; CVS revision: 1.2512

New terms

ID name namespace
GO:0036089 cleavage furrow formation biological_process
GO:0036090 cleavage furrow ingression biological_process
GO:0036091 positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0038059 IKKalpha-IKKalpha complex cellular_component
GO:0038060 nitric oxide-cGMP-mediated signaling pathway biological_process
GO:0044458 motile cilium assembly biological_process
GO:0044465 regulation of sensory perception of pain in another organism biological_process
GO:0052867 phosphatidylinositol-1,4,5-trisphosphate 5-phosphatase activity molecular_function
GO:0052868 protein-lysine lysyltransferase activity molecular_function
GO:0061396 regulation of transcription from RNA polymerase II promoter in response to copper ion biological_process
GO:0061397 positive regulation of transcription from RNA polymerase II promoter in response to copper ion biological_process
GO:0061398 negative regulation of transcription from RNA polymerase II promoter in response to copper ion biological_process
GO:0061399 positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion biological_process
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion biological_process
GO:0061401 positive regulation of transcription from RNA polymerase II promoter in response to a hypotonic environment biological_process
GO:0061402 positive regulation of transcription from RNA polymerase II promoter in response to acidity biological_process
GO:0061403 positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress biological_process
GO:0061404 positive regulation of transcription from RNA polymerase II promoter in response to increased salt biological_process
GO:0061405 positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure biological_process
GO:0061406 positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation biological_process
GO:0061407 positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide biological_process
GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress biological_process
GO:0061409 positive regulation of transcription from RNA polymerase II promoter in response to freezing biological_process
GO:0061410 positive regulation of transcription from RNA polymerase II promoter in response to ethanol biological_process
GO:0061411 positive regulation of transcription from RNA polymerase II promoter in response to cold biological_process
GO:0061412 positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation biological_process
GO:0097210 response to gonadotropin-releasing hormone biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0097212 lysosomal membrane organization biological_process
GO:0097213 regulation of lysosomal membrane permeability biological_process
GO:0097214 positive regulation of lysosomal membrane permeability biological_process
GO:0097215 negative regulation of lysosomal membrane permeability biological_process
GO:0097216 guanosine tetraphosphate binding molecular_function
GO:0097217 sieve area cellular_component
GO:0097218 sieve plate cellular_component
GO:0097219 compound sieve plate cellular_component
GO:0097220 simple sieve plate cellular_component
GO:1900003 regulation of serine-type endopeptidase activity biological_process
GO:1900004 negative regulation of serine-type endopeptidase activity biological_process
GO:1900005 positive regulation of serine-type endopeptidase activity biological_process
GO:1900006 positive regulation of dendrite development biological_process
GO:1900007 regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging biological_process
GO:1900008 negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging biological_process
GO:1900009 positive regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging biological_process
GO:1900010 regulation of corticotropin-releasing hormone receptor activity biological_process
GO:1900011 negative regulation of corticotropin-releasing hormone receptor activity biological_process
GO:1900012 positive regulation of corticotropin-releasing hormone receptor activity biological_process
GO:1900015 regulation of cytokine production involved in inflammatory response biological_process
GO:1900016 negative regulation of cytokine production involved in inflammatory response biological_process
GO:1900017 positive regulation of cytokine production involved in inflammatory response biological_process
GO:1900018 phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex biological_process
GO:1900019 regulation of protein kinase C activity biological_process
GO:1900020 positive regulation of protein kinase C activity biological_process
GO:1900022 regulation of D-erythro-sphingosine kinase activity biological_process
GO:1900023 positive regulation of D-erythro-sphingosine kinase activity biological_process
GO:1900024 regulation of substrate adhesion-dependent cell spreading biological_process
GO:1900025 negative regulation of substrate adhesion-dependent cell spreading biological_process
GO:1900026 positive regulation of substrate adhesion-dependent cell spreading biological_process
GO:1900027 regulation of ruffle assembly biological_process
GO:1900028 negative regulation of ruffle assembly biological_process
GO:1900029 positive regulation of ruffle assembly biological_process
GO:1900030 regulation of pectin biosynthetic process biological_process
GO:1900032 regulation of trichome patterning biological_process
GO:1900033 negative regulation of trichome patterning biological_process
GO:2001289 lipid X metabolic process biological_process

Obsoletions

None

Term merges

None

Term changes

KEY: 'A' : added, 'D' : deleted, 'C' : changed (for properties with only one value)

Changes in term-related data
Term ID name def comment synonym xref is_a relationship
Term ID name def comment synonym xref is_a relationship
GO:0000155
two-component sensor activity		 1 A
GO:0003376
sphingosine-1-phosphate signaling pathway		 C C A 1 D, 7 A 1 A 1 D, 1 A
GO:0003377
regulation of apoptosis by sphingosine-1-phosphate signaling pathway		 C C 1 D, 2 A
GO:0003378
regulation of inflammatory response by sphingosine-1-phosphate signaling pathway		 C C 1 D, 2 A
GO:0004190
aspartic-type endopeptidase activity		 1 A
GO:0004430
1-phosphatidylinositol 4-kinase activity		 1 D
GO:0004702
receptor signaling protein serine/threonine kinase activity		 1 A
GO:0004716
receptor signaling protein tyrosine kinase activity		 1 A
GO:0004728
receptor signaling protein tyrosine phosphatase activity		 1 A
GO:0004897
ciliary neurotrophic factor receptor activity		 C
GO:0004923
leukemia inhibitory factor receptor activity		 C
GO:0004967
glucagon receptor activity		 1 A
GO:0004968
gonadotropin-releasing hormone receptor activity		 C 1 A 1 A
GO:0007166
cell surface receptor signaling pathway		 C 1 A
GO:0007249
I-kappaB kinase/NF-kappaB cascade		 1 D, 1 A
GO:0007250
activation of NF-kappaB-inducing kinase activity		 1 D, 2 A
GO:0007263
nitric oxide mediated signal transduction		 C 1 A 1 D, 1 A
GO:0008385
IkappaB kinase complex		 2 A
GO:0015056
corticotrophin-releasing factor receptor activity		 1 A
GO:0016303
1-phosphatidylinositol-3-kinase activity		 1 A 1 A
GO:0016307
phosphatidylinositol phosphate kinase activity		 1 A
GO:0016316
phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity		 1 A
GO:0016500
protein-hormone receptor activity		 1 A
GO:0016503
pheromone receptor activity		 1 A
GO:0019221
cytokine-mediated signaling pathway		 C
GO:0019722
calcium-mediated signaling		 C
GO:0019932
second-messenger-mediated signaling		 C
GO:0019933
cAMP-mediated signaling		 C
GO:0019934
cGMP-mediated signaling		 C
GO:0019935
cyclic-nucleotide-mediated signaling		 C
GO:0023014
signal transduction by phosphorylation		 C C 1 A 1 A
GO:0023015
signal transduction by cis-phosphorylation		 C C 1 D, 2 A
GO:0023016
signal transduction by trans-phosphorylation		 C C 1 A
GO:0023035
CD40 signaling pathway		 C
GO:0023045
signal transduction by conformational transition		 C C 1 A
GO:0031530
gonadotropin-releasing hormone receptor binding		 C 1 A
GO:0033173
calcineurin-NFAT signaling cascade		 C C 1 D, 2 A
GO:0033211
adiponectin-mediated signaling pathway		 C
GO:0035004
phosphatidylinositol 3-kinase activity		 C
GO:0035005
1-phosphatidylinositol-4-phosphate 3-kinase activity		 1 A
GO:0035014
phosphatidylinositol 3-kinase regulator activity		 1 A
GO:0035689
chemokine (C-C motif) ligand 5 signaling pathway		 C
GO:0035722
interleukin-12-mediated signaling pathway		 C
GO:0038027
apolipoprotein A-I-mediated signaling pathway		 C
GO:0038036
sphingosine-1-phosphate receptor activity		 1 A
GO:0039537
suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway		 5 A 1 A
GO:0043812
phosphatidylinositol-4-phosphate phosphatase activity		 1 A
GO:0043813
phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity		 1 A
GO:0046934
phosphatidylinositol-4,5-bisphosphate 3-kinase activity		 1 A
GO:0048016
inositol phosphate-mediated signaling		 C
GO:0051448
gonadotropin-releasing hormone binding		 C 1 A
GO:0052742
phosphatidylinositol kinase activity		 1 A
GO:0052813
phosphatidylinositol bisphosphate kinase activity		 1 A
GO:0052866
phosphatidylinositol phosphate phosphatase activity		 1 A
GO:0060333
interferon-gamma-mediated signaling pathway		 C
GO:0061311
cell surface receptor signaling pathway involved in heart development		 C C 1 A
GO:0070098
chemokine-mediated signaling pathway		 C
GO:0070120
ciliary neurotrophic factor-mediated signaling pathway		 C
GO:0070498
interleukin-1-mediated signaling pathway		 C
GO:0070884
regulation of calcineurin-NFAT signaling cascade		 C C 1 D, 2 A
GO:0070885
negative regulation of calcineurin-NFAT signaling cascade		 C C 5 D, 7 A
GO:0070886
positive regulation of calcineurin-NFAT signaling cascade		 C C 6 D, 7 A
GO:2000819
regulation of nucleotide-excision repair

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9205
9205 (100.0%) defined 		9208
9208 (100.0%) defined 		+3
cellular component 2944
2944 (100.0%) defined 		2949
2949 (100.0%) defined 		+5
biological process 21765
21765 (100.0%) defined 		21823
21823 (100.0%) defined 		+58
Obsolete 1609
(4.5% of total)		 1609
(4.5% of total)		 0 (0.0%)
Totals 33914
33914 (100.0%) defined
35523 inc. obsoletes 		33980
33980 (100.0%) defined
35589 inc. obsoletes 		+66 (+0.2%)

Ontology report info